Citrus Sinensis ID: 023643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEEccccEEEEEccccccccccccccccEEEcccccccEEEEEccccEEEEEEEccccccEEEEEEccccEEEEEccccccccEEEEEccccEEEEEEcccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEEEccccEEccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHcccEEEEEEEEcEEEccccEEEEccccEEEEEccccEEEEEEccccccEcHHHHccccccEEccccccEEEEEEEEcccccEEEEEccccEEEEEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccEEEEEEcccccEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
mcgdstnwdedaYRKSILKEREILTRTVFrtvwgpskdgspdtiviassdgsitsysipscisklplglsnskvqqllgiepdgflhghdgpaydvkfyggnedALLLscgddgricgwrwkefteskvpinlqgnhvkpvldlvnhqhkgpwgalspvpennaiavdpqggaifsaagdscayCWDVESSRIKMVFKGHSDYLHCIVArnstnqivtgsedgtariwdcksgkcikvidpvkdkqlkgVISCVSCITLDASESWLVRVRATNYVILFS
Flexible Loop (DISEMBL)
mcgdstnwdedayrksilkereiltrtvfrtvwgpskdgspdTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARnstnqivtgsedgtariwdcksgKCIKVIdpvkdkqlkgVISCVSCItldaseswlvrvRATNYVILFS
Low Complexity Region (SEG)
MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS
Disordered region (IsUnstruct)
************YRKSILKEREILTRTVFRTVWGPS*****DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF*
Disordered Region (DISOPRED)
*CGDSTNWDEDAYRKSILK*REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCI**********KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS
Disordered Region (DISEMBL)
*********EDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS
Disordered Region (DISPRO)
MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q8L4M1	367	WD repeat-containing prot	yes	no	0.967	0.735	0.604	4e-96
Q6AY87	341	THO complex subunit 6 hom	yes	no	0.713	0.583	0.268	7e-17
Q5U4D9	341	THO complex subunit 6 hom	yes	no	0.713	0.583	0.268	7e-17
Q86W42	341	THO complex subunit 6 hom	no	no	0.526	0.431	0.295	2e-16
Q5XJS5	323	THO complex subunit 6 hom	yes	no	0.526	0.455	0.274	1e-14
Q9VTV1	350	THO complex subunit 6 OS=	yes	no	0.519	0.414	0.291	5e-13
P49846	704	Transcription initiation	no	no	0.455	0.180	0.285	6e-09
Q498M4	334	WD repeat-containing prot	no	no	0.279	0.233	0.390	9e-09
P61965	334	WD repeat-containing prot	no	no	0.279	0.233	0.390	9e-09
P61964	334	WD repeat-containing prot	no	no	0.279	0.233	0.390	9e-09

>sp|Q8L4M1|DWA1_ARATH WD repeat-containing protein DWA1 OS=Arabidopsis thaliana GN=DWA1 PE=1 SV=1

 Score =  350 bits (899), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/278 (60%), Positives = 216/278 (77%), Gaps = 8/278 (2%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGP-SKDGSPDTIVIASSDGSITSYSIP 59
           M GD+TNW+ED YR+SILKEREI TRTVFRT W P ++  +PD  V+ASSDG++  +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 60  SCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119
           S +S+       SK Q ++  EP+  +  H+GPAYDVKFYG +EDALLLSCGDDGR+ GW
Sbjct: 61  SLVSQ-SASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGW 119

Query: 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179
           +W+EF ES V ++L+ NH+KP+L+L+N QHKGPWGALSP+PE NA++VDPQ G++F+AAG
Sbjct: 120 KWREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAG 179

Query: 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           DSCAYCWDVES +IKM FKGHSDYLH +V+R+S +QI+TGSEDGTARIWDCK+GKC+KVI
Sbjct: 180 DSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI 239

Query: 240 DPV-KDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276
               K  +L+     VS + LD SESWLV  +  N  +
Sbjct: 240 GSQDKKSRLR-----VSSMALDGSESWLVCGQGKNLAL 272

Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling. May function as the substrate recognition module within this complex leading to ABI5 degradation. Functionally redundant with DWA2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6AY87|THOC6_RAT THO complex subunit 6 homolog OS=Rattus norvegicus GN=Thoc6 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 36/235 (15%)

Query: 14  RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD--GSITSYSIPSCISKLPLGLSN 71
           +  + +  + L  T+F      S+  SP    +A+ +  G I  +S+ + +S      S 
Sbjct: 13  QAEVFQALQRLHMTIF------SQSVSPCGKFLAAGNNYGQIAIFSLSAALS------SE 60

Query: 72  SKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI 131
           +K +     +P    H HDGP Y +     + D  LLS GD G + GW W E  +     
Sbjct: 61  AKEE---SKKPMVTFHAHDGPVYSMV----STDRHLLSAGD-GEVKGWLWAEILK----- 107

Query: 132 NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS 191
                  K   +L   Q   P+     VPE NA+ + P+  ++  A GD   +  D+E+ 
Sbjct: 108 -------KGCKELWRRQ--PPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETG 158

Query: 192 RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ 246
                 +GH+DY+HC+  R  + ++++G EDG  R+WD +  K ++ I+  K ++
Sbjct: 159 TFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEE 213

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Rattus norvegicus (taxid: 10116)

>sp|Q5U4D9|THOC6_MOUSE THO complex subunit 6 homolog OS=Mus musculus GN=Thoc6 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 36/235 (15%)

Query: 14  RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD--GSITSYSIPSCISKLPLGLSN 71
           +  + +  + L  T+F      S+  SP    +A+ +  G I  +S+ + +S      S 
Sbjct: 13  QAEVFQALQRLHMTIF------SQSVSPCGKFLAAGNNYGQIAIFSLSAALS------SE 60

Query: 72  SKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI 131
           +K +     +P    H HDGP Y +     + D  LLS GD G + GW W E  +     
Sbjct: 61  AKEE---SKKPVVVFHAHDGPVYSMV----STDRHLLSAGD-GEVKGWLWAEILK----- 107

Query: 132 NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS 191
                  K   +L   Q   P+     VPE NA+ + P+  ++  A GD   +  D+E+ 
Sbjct: 108 -------KGCKELWRRQ--PPYRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETG 158

Query: 192 RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ 246
                 +GH+DY+HC+  R  + ++++G EDG  R+WD +  K ++ I+  K ++
Sbjct: 159 AFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEE 213

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Mus musculus (taxid: 10090)

>sp|Q86W42|THOC6_HUMAN THO complex subunit 6 homolog OS=Homo sapiens GN=THOC6 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 19/166 (11%)

Query: 81  EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKP 140
           +P      HDGP Y +     + D  LLS GD G +  W W E  +            K 
Sbjct: 67  KPVVTFQAHDGPVYSMV----STDRHLLSAGD-GEVKAWLWAEMLK------------KG 109

Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
             +L   Q   P+     VPE NA+ + P+  ++  A GD   +  D+E+     V +GH
Sbjct: 110 CKELWRRQ--PPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGH 167

Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ 246
           +DY+HC+  R  + ++++G EDG  R+WD ++ K ++ I+  K ++
Sbjct: 168 TDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEE 213

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex. The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.

Homo sapiens (taxid: 9606)

>sp|Q5XJS5|THOC6_DANRE THO complex subunit 6 homolog OS=Danio rerio GN=thoc6 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 28/175 (16%)

Query: 88  GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE--SKVPINLQGNHVKPVLDLV 145
            HDGP + +     + ++ LLS G+ G I  W W E  +  +K     + N+   +    
Sbjct: 58  AHDGPVFSLL----STESHLLSAGN-GEISAWSWAELIKKSTKAAWTRKPNYETSL---- 108

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
                        +PE NA+ ++P+   +    GD+  +  D+E+   K V KGH+DY+H
Sbjct: 109 ------------EIPEINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSVLKGHTDYIH 156

Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK-----QLKGVISCVS 255
           C+  +    +I++G EDG  RIWD ++ + +  I+  K +     Q    ISC++
Sbjct: 157 CLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLA 211

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export.

Danio rerio (taxid: 7955)

>sp|Q9VTV1|THOC6_DROME THO complex subunit 6 OS=Drosophila melanogaster GN=thoc6 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 30/175 (17%)

Query: 81  EPDGFLHGH-DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES-------KVPIN 132
           EP G L     G   D+ +   + D L++  G  G I G  W E  ES       +V I 
Sbjct: 48  EPPGKLKIFPQGSDVDINYLAFHRDFLIV--GAVGLIYGLEWNEEEESLATKRSWEVKIP 105

Query: 133 LQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR 192
           +Q + V+                   VP+ N++ +D +   +F+  GD   Y   +E  R
Sbjct: 106 MQVDAVE-------------------VPDVNSMWLDSENSILFAGCGDGVIYQVSLEDGR 146

Query: 193 IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL 247
           I+  ++GH+DY+H +V  N+  QI +G+EDGT R+W  K  +   +++P K+  L
Sbjct: 147 IQREYRGHTDYVHSVVG-NANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNL 200

The THO complex is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress.

Drosophila melanogaster (taxid: 7227)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 27/154 (17%)

Query: 86  LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
           L GH GP Y   F    E  LLLSC +D  I  W    ++     +  +G HV PV D  
Sbjct: 446 LMGHTGPVYRCAF--APEMNLLLSCSEDSTIRLWSLLTWS---CVVTYRG-HVYPVWD-- 497

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
                              +   P G    S + D  A  W  +S++   VF GH   + 
Sbjct: 498 -------------------VRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVD 538

Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           C+    ++N + TGS D T R+WD  +G+ ++++
Sbjct: 539 CVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLM 572

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152

Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPV 174

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152

Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPV 174

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152

Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPV 174

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255546147	764	dead box ATP-dependent RNA helicase, put	0.917	0.335	0.759	1e-114
449452522	369	PREDICTED: WD repeat-containing protein	0.949	0.718	0.726	1e-112
297738639	372	unnamed protein product [Vitis vinifera]	0.985	0.739	0.707	1e-111
359484301	803	PREDICTED: eukaryotic initiation factor	0.946	0.328	0.704	1e-110
356564782	863	PREDICTED: uncharacterized protein LOC10	0.949	0.307	0.685	1e-103
388504418	376	unknown [Medicago truncatula]	0.949	0.704	0.667	1e-103
356545737	821	PREDICTED: eukaryotic initiation factor	0.949	0.322	0.681	1e-102
255636008	374	unknown [Glycine max]	0.953	0.711	0.678	1e-102
297836320	367	transducin family protein [Arabidopsis l	0.967	0.735	0.607	4e-95
4191773	328	putative WD-40 repeat protein [Arabidops	0.967	0.823	0.604	2e-94

>gi|255546147|ref|XP_002514133.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223546589|gb|EEF48087.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/266 (75%), Positives = 223/266 (83%), Gaps = 10/266 (3%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           MCGD+TNWDEDAYR S+LK+RE+ T TVFRT W PS + SPDTIVIASSDGSI SYSI S
Sbjct: 1   MCGDATNWDEDAYRASVLKDRELQTLTVFRTAWAPSSNPSPDTIVIASSDGSIASYSISS 60

Query: 61  CISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120
           CISKLPLG +N++ QQ    EPD  L GHDGPAYDVKFYG  E+ LLLSCGDDGRI GWR
Sbjct: 61  CISKLPLGFNNAEAQQ---AEPDALLRGHDGPAYDVKFYGNCENTLLLSCGDDGRIRGWR 117

Query: 121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180
           WKEF      I L+G+ ++PVLDLVN QHKGPW ALSP+PENNAIAVD Q G IFSAAGD
Sbjct: 118 WKEF------IQLEGHGIQPVLDLVNPQHKGPWDALSPIPENNAIAVDTQRGCIFSAAGD 171

Query: 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
           SCAYCWD+E+S+IK VFKGH DYLHCIVAR STNQI+TGSEDGTARIWDCKSGKC++VID
Sbjct: 172 SCAYCWDMETSKIKTVFKGHLDYLHCIVARKSTNQIITGSEDGTARIWDCKSGKCVQVID 231

Query: 241 PVKDKQLKGVISCVSCITLDASESWL 266
           P KDKQLKG  S VSCI LDASE+WL
Sbjct: 232 PGKDKQLKGS-SYVSCIALDASETWL 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452522|ref|XP_004144008.1| PREDICTED: WD repeat-containing protein DWA1-like [Cucumis sativus] gi|449489893|ref|XP_004158451.1| PREDICTED: WD repeat-containing protein DWA1-like [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/267 (72%), Positives = 222/267 (83%), Gaps = 2/267 (0%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           M GD+TNWDE AYR+SI KEREI TRTVFRT W PS +G P+TIV ASSDGS+ SYSI S
Sbjct: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR 120
           CISKL  G  N+K   LL  EP+ FL GHDGP YDVKFY   ++ LLLSCGDDG I GWR
Sbjct: 61  CISKLQFGYGNTK--SLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWR 118

Query: 121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD 180
           W++ T+ KVPI+LQG+H++PV+DL+N Q KGPWGALSP+PENNAIA D Q G+IFSAAGD
Sbjct: 119 WRDCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGD 178

Query: 181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
           SCAYCWD+ES ++KMVFKGHSDYLHCIVARN+ NQI+TGSEDGTARIWDCKSGKCI++ID
Sbjct: 179 SCAYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID 238

Query: 241 PVKDKQLKGVISCVSCITLDASESWLV 267
           P KDK+LKG  S V CI LDASESWL 
Sbjct: 239 PAKDKKLKGHFSFVRCIALDASESWLA 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738639|emb|CBI27884.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/280 (70%), Positives = 234/280 (83%), Gaps = 5/280 (1%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           M  D+ +WDED YR SILKEREI TRTVFR ++ PS++ +PD IV+ASSDG++ SYSI S
Sbjct: 1   MGSDARDWDEDGYRNSILKEREIQTRTVFRAIFAPSQNPNPDVIVVASSDGTLASYSISS 60

Query: 61  CISKLPLGLSNSKVQQ-LLGI---EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116
           CIS+L  G  N++ ++ LLG+   EP+ FL GHDGPAYDVKFYG  E++LLLSCGDDGRI
Sbjct: 61  CISQLS-GFGNARPRKSLLGLPVAEPNCFLQGHDGPAYDVKFYGDGEESLLLSCGDDGRI 119

Query: 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176
            GWRWKE T+S+V I LQGNHV+PVLDLVN QHKGPWGALSPVPENNAIAV+ Q G++F+
Sbjct: 120 RGWRWKEITQSEVHIPLQGNHVEPVLDLVNPQHKGPWGALSPVPENNAIAVNAQWGSVFA 179

Query: 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
           AAGDSCAYCWDVE S+IKMVFKGHSDYLHCI+ARNS+NQI+TGSEDGTARIWDC+SGKCI
Sbjct: 180 AAGDSCAYCWDVEKSKIKMVFKGHSDYLHCIIARNSSNQIITGSEDGTARIWDCQSGKCI 239

Query: 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276
           +VID  KDK+ K + SCVSCI LDASESWL   R  +  +
Sbjct: 240 QVIDAKKDKKPKEIFSCVSCIALDASESWLAYGRGRSLSV 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484301|ref|XP_002281247.2| PREDICTED: eukaryotic initiation factor 4A-15-like [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/274 (70%), Positives = 228/274 (83%), Gaps = 10/274 (3%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           M  D+ +WDED YR SILKEREI TRTVFR ++ PS++ +PD IV+ASSDG++ SYSI S
Sbjct: 1   MGSDARDWDEDGYRNSILKEREIQTRTVFRAIFAPSQNPNPDVIVVASSDGTLASYSISS 60

Query: 61  CISKLPLGLSNSKVQQ-LLGI---EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116
           CIS+L  G  N++ ++ LLG+   EP+ FL GHDGPAYDVKFYG  E++LLLSCGDDGRI
Sbjct: 61  CISQLQSGFGNARPRKSLLGLPVAEPNCFLQGHDGPAYDVKFYGDGEESLLLSCGDDGRI 120

Query: 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176
            GWRWKE T+S+V      +HV+PVLDLVN QHKGPWGALSPVPENNAIAV+ Q G++F+
Sbjct: 121 RGWRWKEITQSEV------HHVEPVLDLVNPQHKGPWGALSPVPENNAIAVNAQWGSVFA 174

Query: 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
           AAGDSCAYCWDVE S+IKMVFKGHSDYLHCI+ARNS+NQI+TGSEDGTARIWDC+SGKCI
Sbjct: 175 AAGDSCAYCWDVEKSKIKMVFKGHSDYLHCIIARNSSNQIITGSEDGTARIWDCQSGKCI 234

Query: 237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270
           +VID  KDK+ K + SCVSCI LDASESWL   R
Sbjct: 235 QVIDAKKDKKPKEIFSCVSCIALDASESWLAYGR 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564782|ref|XP_003550627.1| PREDICTED: uncharacterized protein LOC100806423 [Glycine max]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/270 (68%), Positives = 219/270 (81%), Gaps = 5/270 (1%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           MCGD+TNWDEDAYR++ILKEREI TRTVFRT W P    + DT+++ASSDGS+ SYSI S
Sbjct: 1   MCGDATNWDEDAYRETILKEREIQTRTVFRTAWAPPYTSNLDTLILASSDGSVASYSISS 60

Query: 61  CIS----KLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116
            I+    K P G  N+   +LL  EP+ F+  HDGPAYDV+FYG  EDALLLSCGDDGRI
Sbjct: 61  SIAASKIKNPFGFVNADTDELLA-EPNCFVQAHDGPAYDVRFYGDGEDALLLSCGDDGRI 119

Query: 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176
            GWRW EF+ S   ++ QGN +KPVLD+VN QHKGPWGALSP+PENNAIAV+ QGG++F+
Sbjct: 120 RGWRWNEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFA 179

Query: 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
           A+GDSCAYCWDVE+ ++KMVFKGH DYLHCIVARNS +QI+TGSEDGT RIWDCKSGKC 
Sbjct: 180 ASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSLDQIITGSEDGTTRIWDCKSGKCT 239

Query: 237 KVIDPVKDKQLKGVISCVSCITLDASESWL 266
           +VIDP +D +LKG  S V C+ LDASESWL
Sbjct: 240 QVIDPARDLKLKGSASWVGCVALDASESWL 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504418|gb|AFK40275.1| unknown [Medicago truncatula]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/271 (66%), Positives = 216/271 (79%), Gaps = 6/271 (2%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           M GD+TNW+ED+YR+++LKEREI T+TVFRT W PS+   P ++ +ASSDGSI SYS+PS
Sbjct: 4   MLGDATNWNEDSYREAVLKEREIQTQTVFRTAWAPSQ-SQPQSLFVASSDGSIASYSLPS 62

Query: 61  CIS----KLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116
            I+    K P G  N+    LL  EPD     H G AYDVKFYG +E+ALLLSCGDDGRI
Sbjct: 63  TITASKLKNPFGFVNAYADDLLA-EPDCLFQAHHGSAYDVKFYGDDENALLLSCGDDGRI 121

Query: 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176
            GWRWKE T SK  I+ +GN +KPVLD+VN QHKGPWG+LSP+PENNAIAV+ Q G++F+
Sbjct: 122 QGWRWKELTSSKYTISSEGNDIKPVLDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFA 181

Query: 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
           A+GDSCAYCWDVE+ ++K VFKGHSDYLHCIVARNS+NQI+TGSEDGT RIWDCKSGKCI
Sbjct: 182 ASGDSCAYCWDVETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCI 241

Query: 237 KVIDPVKDKQLKGVISCVSCITLDASESWLV 267
           +VIDP K  +LKG IS V  + LDASESWL 
Sbjct: 242 QVIDPAKHLKLKGPISWVGSVALDASESWLA 272

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545737|ref|XP_003541292.1| PREDICTED: eukaryotic initiation factor 4A-15-like [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/270 (68%), Positives = 219/270 (81%), Gaps = 5/270 (1%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           MCGD+TNWDEDAYR+++L+EREI TRTVFRT W P    + DT+++ASSDGS+ SYSI S
Sbjct: 1   MCGDATNWDEDAYRETVLREREIQTRTVFRTAWAPPYTSNLDTLLVASSDGSVASYSISS 60

Query: 61  CIS----KLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116
            +     K P G  N+   +LL  EP+ F+  H GPAYDVKFYG  EDALLLSCGDDG+I
Sbjct: 61  SVVASKLKNPFGFVNADTDELLA-EPNCFVQAHAGPAYDVKFYGDGEDALLLSCGDDGQI 119

Query: 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176
            GWRWKEF+ S   ++ QGN +KPVLD+VN QHKGPWGALSPVPENNAIAV+ QGG++F+
Sbjct: 120 RGWRWKEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPVPENNAIAVNTQGGSVFA 179

Query: 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
           A+GDSCAYCWDVE+ ++KMVFKGH DYLHCIVARNS+NQI+TGSEDGT RIWDCKSGKC 
Sbjct: 180 ASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCT 239

Query: 237 KVIDPVKDKQLKGVISCVSCITLDASESWL 266
           +VIDP +D +LKG  S V C+ LDASESWL
Sbjct: 240 QVIDPARDLKLKGSASWVGCVALDASESWL 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636008|gb|ACU18349.1| unknown [Glycine max]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/271 (67%), Positives = 219/271 (80%), Gaps = 5/271 (1%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS 60
           MCGD+TNWDEDAYR+++L+EREI TRTVFRT W P    + DT+++ASSDGS+ SYSI S
Sbjct: 1   MCGDATNWDEDAYRETVLREREIQTRTVFRTAWAPPYTSNLDTLLVASSDGSVASYSISS 60

Query: 61  CIS----KLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRI 116
            +     K P G  N+   +LL  EP+ F+  H GPAYDVKFYG  EDALLLSCGDDG+I
Sbjct: 61  SVVASKLKNPFGFVNADTDELLA-EPNCFVQAHAGPAYDVKFYGDGEDALLLSCGDDGQI 119

Query: 117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS 176
            GWRWKEF+ S   ++ QGN +KPVLD+VN QHKGPWGALSPVPENNAIAV+ QGG++F+
Sbjct: 120 RGWRWKEFSSSNYSVSPQGNDIKPVLDVVNPQHKGPWGALSPVPENNAIAVNTQGGSVFA 179

Query: 177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
           A+GDSCAYCWDVE+ ++KMVFKGH DYLHCIVARNS+NQI+TGSEDGT RIWDCKSGKC 
Sbjct: 180 ASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCT 239

Query: 237 KVIDPVKDKQLKGVISCVSCITLDASESWLV 267
           +VIDP +D +LKG  S V C+ LDASESWL 
Sbjct: 240 QVIDPARDLKLKGSASWVGCVALDASESWLA 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836320|ref|XP_002886042.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331882|gb|EFH62301.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 169/278 (60%), Positives = 214/278 (76%), Gaps = 8/278 (2%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGP-SKDGSPDTIVIASSDGSITSYSIP 59
           M GD+TNW+ED YR+SILKEREI TRTVFRT W P ++  +PD  V+ASSDG++  +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIQTRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLK 60

Query: 60  SCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119
           S +S+       SK Q ++  EP+  +  HDGPAYDVKFYG  EDALLLSCGDDGR+ GW
Sbjct: 61  SLVSQ-SASFGYSKGQDVMVAEPERVVRAHDGPAYDVKFYGEEEDALLLSCGDDGRVRGW 119

Query: 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179
           +W+EF ES++ ++ Q NHVKP+L+L N QHKGPWGALSP+PE NA++VDPQ G++F+AAG
Sbjct: 120 KWREFAESEMSLHFQENHVKPLLELTNPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAG 179

Query: 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           DSCAYCWDVES +IKM FKGHSDYLH +V+R+S +QI+TGSEDGTARIWDCK+GKC+KVI
Sbjct: 180 DSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI 239

Query: 240 DPV-KDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276
               K  +L+     VS + LD SESWLV  +  N  +
Sbjct: 240 GSQDKKSRLR-----VSSMALDGSESWLVCGQGKNLAL 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4191773|gb|AAD10142.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|20197012|gb|AAM14874.1| putative WD-40 repeat protein [Arabidopsis thaliana]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/278 (60%), Positives = 216/278 (77%), Gaps = 8/278 (2%)

Query: 1   MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGP-SKDGSPDTIVIASSDGSITSYSIP 59
           M GD+TNW+ED YR+SILKEREI TRTVFRT W P ++  +PD  V+ASSDG++  +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 60  SCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119
           S +S+       SK Q ++  EP+  +  H+GPAYDVKFYG +EDALLLSCGDDGR+ GW
Sbjct: 61  SLVSQ-SASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGW 119

Query: 120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179
           +W+EF ES V ++L+ NH+KP+L+L+N QHKGPWGALSP+PE NA++VDPQ G++F+AAG
Sbjct: 120 KWREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAG 179

Query: 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           DSCAYCWDVES +IKM FKGHSDYLH +V+R+S +QI+TGSEDGTARIWDCK+GKC+KVI
Sbjct: 180 DSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI 239

Query: 240 DPV-KDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276
               K  +L+     VS + LD SESWLV  +  N  +
Sbjct: 240 GSQDKKSRLR-----VSSMALDGSESWLVCGQGKNLAL 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2047635	367	DWA1 "AT2G19430" [Arabidopsis	0.971	0.738	0.606	1e-91
DICTYBASE|DDB_G0287653	479	thoc6 "WD40 repeat-containing	0.530	0.308	0.319	3.1e-16
UNIPROTKB|Q86W42	341	THOC6 "THO complex subunit 6 h	0.566	0.463	0.280	1.2e-14
MGI|MGI:2677480	341	Thoc6 "THO complex 6 homolog (	0.566	0.463	0.280	1.7e-14
RGD|708553	341	Thoc6 "THO complex 6 homolog (	0.566	0.463	0.280	1.7e-14
UNIPROTKB|F1MPQ0	341	THOC6 "Uncharacterized protein	0.566	0.463	0.275	7.6e-14
UNIPROTKB|I3L928	341	THOC6 "Uncharacterized protein	0.566	0.463	0.269	1.4e-13
ZFIN|ZDB-GENE-041010-198	323	thoc6 "THO complex 6 homolog (	0.516	0.445	0.282	7.9e-13
FB|FBgn0036263	350	thoc6 "thoc6" [Drosophila mela	0.544	0.434	0.291	2e-12
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.279	0.253	0.390	5.5e-09

TAIR|locus:2047635 DWA1 "AT2G19430" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 168/277 (60%), Positives = 217/277 (78%)

Query:     1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGP-SKDGSPDTIVIASSDGSITSYSIP 59
             M GD+TNW+ED YR+SILKEREI TRTVFRT W P ++  +PD  V+ASSDG++  +S+ 
Sbjct:     1 MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query:    60 SCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW 119
             S +S+       SK Q ++  EP+  +  H+GPAYDVKFYG +EDALLLSCGDDGR+ GW
Sbjct:    61 SLVSQ-SASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGW 119

Query:   120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG 179
             +W+EF ES V ++L+ NH+KP+L+L+N QHKGPWGALSP+PE NA++VDPQ G++F+AAG
Sbjct:   120 KWREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAG 179

Query:   180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
             DSCAYCWDVES +IKM FKGHSDYLH +V+R+S +QI+TGSEDGTARIWDCK+GKC+KVI
Sbjct:   180 DSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI 239

Query:   240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI 276
                +DK+ +     VS + LD SESWLV  +  N  +
Sbjct:   240 GS-QDKKSR---LRVSSMALDGSESWLVCGQGKNLAL 272

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP

GO:0031047 "gene silencing by RNA" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

DICTYBASE|DDB_G0287653 thoc6 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 3.1e-16, P = 3.1e-16
 Identities = 54/169 (31%), Positives = 90/169 (53%)

Query:    87 HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL---QGNHVKP--- 140
             H    P   + F+    D +L S G++  I  W W++  ++ + +NL   Q  H      
Sbjct:   125 HAPYTPINKIHFFN---DQILASAGEND-IKLWSWEKI-KTIIDLNLEKIQNQHYNDDII 179

Query:   141 VLD--------LVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR 192
              LD        + + + +G  G LS   E N I  D  G  ++ A+G++ AY +D+ +S+
Sbjct:   180 KLDWKSIYLTCIESPRIEGHGGQLSEKSEINGI--DSHGAILYFASGNNNAYSYDLTTSQ 237

Query:   193 IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241
             I   ++GH+DYLH I   +S + I+T SED T R+WD KSG+C+ +++P
Sbjct:   238 IISCYRGHTDYLHTIKYNSSFSNIITSSEDSTVRLWDSKSGQCVSILNP 286

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q86W42 THOC6 "THO complex subunit 6 homolog" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 50/178 (28%), Positives = 86/178 (48%)

Query:    93 AYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
             A+D   Y   + D  LLS GD G +  W W E  +            K   +L   Q   
Sbjct:    74 AHDGPVYSMVSTDRHLLSAGD-GEVKAWLWAEMLK------------KGCKELWRRQP-- 118

Query:   152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
             P+     VPE NA+ + P+  ++  A GD   +  D+E+     V +GH+DY+HC+  R 
Sbjct:   119 PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRE 178

Query:   212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLV 267
              + ++++G EDG  R+WD ++ K ++ I+  K ++     +   + C+  D+   W+V
Sbjct:   179 RSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDSD--WMV 234

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000346 "transcription export complex" evidence=IDA

GO:0000445 "THO complex part of transcription export complex" evidence=IDA

GO:0000347 "THO complex" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IDA

MGI|MGI:2677480 Thoc6 "THO complex 6 homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 50/178 (28%), Positives = 85/178 (47%)

Query:    93 AYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
             A+D   Y   + D  LLS GD G + GW W E  +            K   +L   Q   
Sbjct:    74 AHDGPVYSMVSTDRHLLSAGD-GEVKGWLWAEILK------------KGCKELWRRQP-- 118

Query:   152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
             P+     VPE NA+ + P+  ++  A GD   +  D+E+       +GH+DY+HC+  R 
Sbjct:   119 PYRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRE 178

Query:   212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLV 267
              + ++++G EDG  R+WD +  K ++ I+  K ++     +   + C+  D+   W+V
Sbjct:   179 RSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDSD--WMV 234

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

RGD|708553 Thoc6 "THO complex 6 homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 50/178 (28%), Positives = 85/178 (47%)

Query:    93 AYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
             A+D   Y   + D  LLS GD G + GW W E  +            K   +L   Q   
Sbjct:    74 AHDGPVYSMVSTDRHLLSAGD-GEVKGWLWAEILK------------KGCKELWRRQP-- 118

Query:   152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
             P+     VPE NA+ + P+  ++  A GD   +  D+E+       +GH+DY+HC+  R 
Sbjct:   119 PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRE 178

Query:   212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLV 267
              + ++++G EDG  R+WD +  K ++ I+  K ++     +   + C+  D+   W+V
Sbjct:   179 RSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDSD--WMV 234

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA;ISO

UNIPROTKB|F1MPQ0 THOC6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 49/178 (27%), Positives = 84/178 (47%)

Query:    93 AYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
             A+D   Y   + D  LLS GD G +  W W E  +            K   +L   Q   
Sbjct:    74 AHDGPVYSMVSTDRHLLSAGD-GEVKAWLWAEILK------------KGCKELWRRQP-- 118

Query:   152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
             P+     VPE NA+ + P+   +  A GD   +  D+E+       +GH+DY+HC+  R 
Sbjct:   119 PYRTSLEVPEINALLLVPKENLLILAGGDCQLHAMDLETGTFMWALRGHTDYIHCLALRE 178

Query:   212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLV 267
              + ++++G EDG  R+WD ++ K ++ I+  K ++     +   + C+  D+   W+V
Sbjct:   179 RSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDSD--WMV 234

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

UNIPROTKB|I3L928 THOC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 48/178 (26%), Positives = 85/178 (47%)

Query:    93 AYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
             A+D   Y   + D  LLS GD G +  W W E  +            K   +L   Q   
Sbjct:    74 AHDGPVYSMVSTDRHLLSAGD-GEVKAWLWAEILK------------KGCKELWRRQP-- 118

Query:   152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
             P+     VPE NA+ + P+  ++  A GD   +  D+E+       +GH+DY+HC+  R 
Sbjct:   119 PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGAFTRALRGHTDYIHCLALRE 178

Query:   212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLV 267
              + ++++G EDG  R+WD ++ + ++ I+  K ++     +   + C+  D+   W+V
Sbjct:   179 RSPEVLSGGEDGAVRLWDLRTAREVQTIEVYKHEECSRPHNGRWIGCLATDSD--WMV 234

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

ZFIN|ZDB-GENE-041010-198 thoc6 "THO complex 6 homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 7.9e-13, P = 7.9e-13
 Identities = 46/163 (28%), Positives = 80/163 (49%)

Query:   107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIA 166
             LLS G+ G I  W W E  +            KP     N++      +L  +PE NA+ 
Sbjct:    73 LLSAGN-GEISAWSWAELIKKSTKAAWTR---KP-----NYET-----SLE-IPEINAMI 117

Query:   167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR 226
             ++P+   +    GD+  +  D+E+   K V KGH+DY+HC+  +    +I++G EDG  R
Sbjct:   118 INPKDNNLIVGGGDNNIHIMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVR 177

Query:   227 IWDCKSGKCIKVIDPVKDKQLKGVI--SCVSCITLDASESWLV 267
             IWD ++ + +  I+  K ++         +SC+  D+   W++
Sbjct:   178 IWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATDSD--WML 218

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0036263 thoc6 "thoc6" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 49/168 (29%), Positives = 79/168 (47%)

Query:    81 EPDGFLHGH-DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK 139
             EP G L     G   D+ +   + D L++  G  G I G  W E  ES          + 
Sbjct:    48 EPPGKLKIFPQGSDVDINYLAFHRDFLIV--GAVGLIYGLEWNEEEESLATKRSWEVKIP 105

Query:   140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG 199
               +D V             VP+ N++ +D +   +F+  GD   Y   +E  RI+  ++G
Sbjct:   106 MQVDAVE------------VPDVNSMWLDSENSILFAGCGDGVIYQVSLEDGRIQREYRG 153

Query:   200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL 247
             H+DY+H +V  N+  QI +G+EDGT R+W  K  +   +++P K+  L
Sbjct:   154 HTDYVHSVVG-NANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNL 200

GO:0003674 "molecular_function" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=NAS

GO:0000347 "THO complex" evidence=IDA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:   165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
             +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct:    67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126

Query:   225 ARIWDCKSGKCIKVI----DPV 242
              RIWD K+GKC+K +    DPV
Sbjct:   127 VRIWDVKTGKCLKTLPAHSDPV 148

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L4M1	DWA1_ARATH	No assigned EC number	0.6043	0.9677	0.7356	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 27/154 (17%)

Query: 86  LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
           L GH      V F       +L S   D  I  W  +          L+G H   V    
Sbjct: 89  LTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTT---LRG-HTDWV---- 138

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
                            N++A  P G  + S++ D     WD+ + +      GH+  ++
Sbjct: 139 -----------------NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
            +       ++++ S DGT ++WD  +GKC+  +
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 88  GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH 147
           GH G    V F    +  LL +   DG I  W                   + +  L  H
Sbjct: 7   GHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDL--------------ETGELLRTLKGH 50

Query: 148 QHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCI 207
                            +A    G  + S + D     WD+E+        GH+ Y+  +
Sbjct: 51  TGPVRD-----------VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99

Query: 208 VARNSTNQIVTGSEDGTARIWDCKSGKCIKVI----DPVKD 244
                   + + S D T ++WD ++GKC+  +    D V  
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 41/192 (21%), Positives = 62/192 (32%), Gaps = 46/192 (23%)

Query: 38  DGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97
                 +  +S DG+I  + + +                    +    L GH G    V 
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLRTG-------------------KCVATLTGHTGEVNSVA 184

Query: 98  FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157
           F    E   LLS   DG I  W             L+G H   V                
Sbjct: 185 FSPDGEK--LLSSSSDGTIKLWDLSTGKCLGT---LRG-HENGV---------------- 222

Query: 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV 217
                N++A  P G  + S + D     WD+ +        GH++ +  +       ++ 
Sbjct: 223 -----NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 218 TGSEDGTARIWD 229
           +GS DGT RIWD
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
             +A  P G  + + +GD     WD+E+  +    KGH+  +  + A      + +GS D
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            T R+WD ++G+C++         L G  S VS +        L 
Sbjct: 73  KTIRLWDLETGECVRT--------LTGHTSYVSSVAFSPDGRILS 109

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 58/283 (20%), Positives = 92/283 (32%), Gaps = 53/283 (18%)

Query: 8   WDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL 67
           WD D   K I     +   +V +     S DG+   +  +S DG++  + + +    +  
Sbjct: 92  WDLDNGEKLIKSLEGLHDSSVSKLAL-SSPDGNSILLASSSLDGTVKLWDLSTPGKLI-- 148

Query: 68  GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES 127
                             L GH      + F   +   L      DG I  W  +     
Sbjct: 149 ----------------RTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK-- 189

Query: 128 KVPINLQGNHVKPVLDLVNHQHKGP----------------------WGALSPVPENNAI 165
             P++    H  PV  L      G                          LS   ++   
Sbjct: 190 --PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIK-MVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +  P G  + S + D     WD+ SS        GHS  +  +        + +GS DGT
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307

Query: 225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            R+WD ++GK +  +       LKG    VS ++     S LV
Sbjct: 308 VRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLV 344

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 36/221 (16%), Positives = 63/221 (28%), Gaps = 44/221 (19%)

Query: 32  VWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG 91
           V   +       +   SSDG++  + + +      L L                  GH+G
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK-----------------GHEG 329

Query: 92  PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
           P   + F   +   L+    DDG I  W  +     K                       
Sbjct: 330 PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS----------------- 371

Query: 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
                       +++  P G  + S + D     WD+ +  +     GH+  +  +    
Sbjct: 372 ---------NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422

Query: 212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS 252
               + +GS D T R+WD K+        P           
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 86  LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-LQGNHVKPVLDL 144
           L G +GP  DV F   +    L +  +DG I GW         +P   L  N   P++ L
Sbjct: 71  LLGQEGPIIDVAFNPFD-PQKLFTASEDGTIMGW--------GIPEEGLTQNISDPIVHL 121

Query: 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYL 204
             H  K   G +S  P             + SA  D     WDVE  +   V K HSD +
Sbjct: 122 QGHTKK--VGIVSFHPSAM--------NVLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171

Query: 205 HCIVARNSTNQIVTGSEDGTARIWDCKSGKCI 236
             +      + + T S+D    I D + G  +
Sbjct: 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 190 SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229
           S  +    KGH+  +  +        + +GS+DGT ++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 49/235 (20%), Positives = 81/235 (34%), Gaps = 47/235 (20%)

Query: 36  SKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD 95
           S DGS   +   SSDG+I  + + S  S L                    L GH      
Sbjct: 250 SPDGS--LLASGSSDGTIRLWDLRSSSSLLR------------------TLSGHSSSVLS 289

Query: 96  VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA 155
           V F    +  LL S   DG +  W            +L+   +   L L  H+       
Sbjct: 290 VAFSP--DGKLLASGSSDGTVRLW------------DLETGKLLSSLTLKGHEG------ 329

Query: 156 LSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN 214
                  ++++  P G  + S    D     WD+ + +     +GHS+ +  +       
Sbjct: 330 -----PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGR 383

Query: 215 QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV 269
            + +GS DGT R+WD  +G  ++ +D    +      S         S    +R+
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255
             KGH+  + C+        + TGS DGT ++WD ++G+ +        + LKG    V 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--------RTLKGHTGPVR 55

Query: 256 CITLDASESWLV 267
            +   A  ++L 
Sbjct: 56  DVAASADGTYLA 67

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 6e-05
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 192 RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229
           ++    KGH+  +  +      N + +GS+DGT R+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG0649	325	consensus WD40 repeat protein [General function pr	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
KOG4547	541	consensus WD40 repeat-containing protein [General	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
KOG4547	541	consensus WD40 repeat-containing protein [General	99.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.48
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.47
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.44
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
COG4946	668	Uncharacterized protein related to the periplasmic	99.39
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.36
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.28
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.27
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.24
KOG2695	425	consensus WD40 repeat protein [General function pr	99.24
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.23
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.2
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.2
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.17
PRK04043	419	tolB translocation protein TolB; Provisional	99.16
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.16
KOG1334	559	consensus WD40 repeat protein [General function pr	99.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.11
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.11
KOG2315	566	consensus Predicted translation initiation factor	99.11
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.06
KOG2695	425	consensus WD40 repeat protein [General function pr	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.04
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.86
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.78
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.71
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.71
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
KOG2314	698	consensus Translation initiation factor 3, subunit	98.64
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.62
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.51
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG3621	726	consensus WD40 repeat-containing protein [General	98.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.37
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.32
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.25
PRK02888	635	nitrous-oxide reductase; Validated	98.24
KOG3621	726	consensus WD40 repeat-containing protein [General	98.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.19
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.03
PRK02888	635	nitrous-oxide reductase; Validated	98.0
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.97
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.95
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.91
KOG2444	238	consensus WD40 repeat protein [General function pr	97.89
KOG2395	644	consensus Protein involved in vacuole import and d	97.87
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.77
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.71
KOG2444	238	consensus WD40 repeat protein [General function pr	97.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.64
PRK13616	591	lipoprotein LpqB; Provisional	97.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.63
COG3391	381	Uncharacterized conserved protein [Function unknow	97.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.62
PRK13616	591	lipoprotein LpqB; Provisional	97.59
COG3391	381	Uncharacterized conserved protein [Function unknow	97.5
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.46
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.46
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.45
PHA02713	557	hypothetical protein; Provisional	97.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.42
KOG2395	644	consensus Protein involved in vacuole import and d	97.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.37
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.35
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.34
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.26
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.23
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.05
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	97.02
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.93
PHA02713	557	hypothetical protein; Provisional	96.85
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.78
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.77
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.75
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.69
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.68
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.68
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.66
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.65
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.62
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.62
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.61
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.59
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.55
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.53
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.5
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.47
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.46
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.44
PHA03098	534	kelch-like protein; Provisional	96.44
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.39
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.35
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.14
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.79
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.7
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.62
PHA03098	534	kelch-like protein; Provisional	95.59
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.46
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.44
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.42
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.32
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.13
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.07
KOG2247	615	consensus WD40 repeat-containing protein [General	94.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.86
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.72
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.72
PHA02790	480	Kelch-like protein; Provisional	94.53
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.47
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.38
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.31
COG5167	776	VID27 Protein involved in vacuole import and degra	94.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.24
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.04
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	94.03
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.84
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.78
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	93.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.48
PRK13684	334	Ycf48-like protein; Provisional	93.35
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.12
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.09
KOG2247	615	consensus WD40 repeat-containing protein [General	93.06
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.76
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.56
COG4590	733	ABC-type uncharacterized transport system, permeas	92.48
PRK10115	686	protease 2; Provisional	92.47
COG5167	776	VID27 Protein involved in vacuole import and degra	92.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.32
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.25
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.86
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.75
PHA02790	480	Kelch-like protein; Provisional	91.69
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.53
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.49
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.22
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	91.1
COG5276	370	Uncharacterized conserved protein [Function unknow	90.88
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.49
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.15
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.15
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.11
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.86
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.59
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.5
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	89.44
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.31
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.97
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.68
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.12
PRK10115	686	protease 2; Provisional	88.09
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.71
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.66
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.57
COG4880	603	Secreted protein containing C-terminal beta-propel	87.18
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.97
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.9
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.87
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.77
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.52
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.35
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.24
COG4590	733	ABC-type uncharacterized transport system, permeas	85.21
COG1520	370	FOG: WD40-like repeat [Function unknown]	84.84
KOG2109	788	consensus WD40 repeat protein [General function pr	84.23
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	83.37
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	82.26
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	81.32
KOG3616	1636	consensus Selective LIM binding factor [Transcript	80.94
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.53
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.15

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.6e-46  Score=274.96  Aligned_cols=220  Identities=23%  Similarity=0.310  Sum_probs=199.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.+++|+....  ..+..+.+|...|.++.|+|..  ++..||+++.||++++|++.+                   ..
T Consensus       196 sG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~-------------------e~  252 (459)
T KOG0272|consen  196 SGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQ-------------------ET  252 (459)
T ss_pred             CCceeEeecCCc--ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCC-------------------Cc
Confidence            699999998777  5588999999999999999930  266899999999999999998                   68


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ++..+.+|...|..++|+|+|+  +|+|++.|.+-++||+++.   .......||. .                     .
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk---~ElL~QEGHs-~---------------------~  305 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETK---SELLLQEGHS-K---------------------G  305 (459)
T ss_pred             chhhhhcchhhheeeeecCCCc--eeeecccccchhhcccccc---hhhHhhcccc-c---------------------c
Confidence            8899999999999999999999  9999999999999998764   2222333322 2                     3


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |.+++|.|||.++++|+.|..-+|||+++++++..+.+|..+|.+|+|+|+|..|+|||.|++++|||++..+++.++  
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i--  383 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI--  383 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             CccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                            .+|..-|+.|+|+| .|.+|+|++.|+++++|+
T Consensus       384 ------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  384 ------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             ------ccccchhhheEecccCCeEEEEcccCcceeeec
Confidence                  79999999999999 789999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-45  Score=267.49  Aligned_cols=242  Identities=21%  Similarity=0.249  Sum_probs=199.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |-++|+||+.+..  .+.+.++|..-|.|++|+|    |+..||+|+.||+|++||..++                  ..
T Consensus       136 D~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsP----Dgk~iASG~~dg~I~lwdpktg------------------~~  191 (480)
T KOG0271|consen  136 DTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSP----DGKKIASGSKDGSIRLWDPKTG------------------QQ  191 (480)
T ss_pred             CceEEeeccCCCC--cceeecCCccEEEEEEECC----CcchhhccccCCeEEEecCCCC------------------Cc
Confidence            6689999999874  4788999999999999999    9999999999999999999986                  45


Q ss_pred             ccccccCCccCeEEEEecCCC---CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC-----------
Q 023643           82 PDGFLHGHDGPAYDVKFYGGN---EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH-----------  147 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  147 (279)
                      ....+.+|...|++++|.|-.   ...+|++++.||+++|||+...   .+...+.+ |..++.++...           
T Consensus       192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~---~~~~~lsg-HT~~VTCvrwGG~gliySgS~D  267 (480)
T KOG0271|consen  192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG---TCVRTLSG-HTASVTCVRWGGEGLIYSGSQD  267 (480)
T ss_pred             ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---eEEEEecc-CccceEEEEEcCCceEEecCCC
Confidence            667899999999999998732   1238999999999999998542   11111111 11111111000           


Q ss_pred             --------------------------------------------------------------------------------
Q 023643          148 --------------------------------------------------------------------------------  147 (279)
Q Consensus       148 --------------------------------------------------------------------------------  147 (279)
                                                                                                      
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence                                                                                            


Q ss_pred             -------CCCCcc-ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          148 -------QHKGPW-GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       148 -------~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                             ....++ ....|..-|+.+.|+||++++++++-|..|++||.++|+.+.+|++|-++|+.++|+.|.++|++|
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG  427 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence                   000000 002344568999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |.|.++++||+++.+....+        .+|...|.++.|+|||..+++|+.|..+++|.
T Consensus       428 SkDsTLKvw~V~tkKl~~DL--------pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  428 SKDSTLKVWDVRTKKLKQDL--------PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceEEEEEeeeeeecccC--------CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999988888        78999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-45  Score=272.07  Aligned_cols=219  Identities=19%  Similarity=0.260  Sum_probs=203.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +||++++|++++.  ..+..+.+|...|..++|+|    +|++|+|++.|.+-++||+.+                   .
T Consensus       239 ~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHP----sG~~L~TasfD~tWRlWD~~t-------------------k  293 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHP----SGKFLGTASFDSTWRLWDLET-------------------K  293 (459)
T ss_pred             cCCceeeeccCCC--cchhhhhcchhhheeeeecC----CCceeeecccccchhhccccc-------------------c
Confidence            5999999999887  45889999999999999999    999999999999999999999                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ..+....||...|.+++|.|+|.  +++|||.|..-+|||++++   .++..+.+ |.+                     
T Consensus       294 ~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~RvWDlRtg---r~im~L~g-H~k---------------------  346 (459)
T KOG0272|consen  294 SELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGRVWDLRTG---RCIMFLAG-HIK---------------------  346 (459)
T ss_pred             hhhHhhcccccccceeEecCCCc--eeeccCccchhheeecccC---cEEEEecc-ccc---------------------
Confidence            66777889999999999999998  9999999999999998764   56666666 443                     


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +|.+++|+|+|..|++|+.|++++|||++..+++.++.+|.+-|+.+.|+| .|.+|++++.|++++||..++.++++.+
T Consensus       347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL  426 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL  426 (459)
T ss_pred             ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence            368999999999999999999999999999999999999999999999999 6899999999999999999999999999


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .+|...|.++.+++++.+++|++.|.++++|.
T Consensus       427 --------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  427 --------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                    79999999999999999999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8e-43  Score=275.96  Aligned_cols=204  Identities=20%  Similarity=0.335  Sum_probs=186.1

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      .+++-+|.++|+.+.|+|    +.++|++++.|+++|+|.+.+                   ...+-.+++|..||..+.
T Consensus       444 ~~~L~GH~GPVyg~sFsP----d~rfLlScSED~svRLWsl~t-------------------~s~~V~y~GH~~PVwdV~  500 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSP----DRRFLLSCSEDSSVRLWSLDT-------------------WSCLVIYKGHLAPVWDVQ  500 (707)
T ss_pred             eEEeecCCCceeeeeecc----cccceeeccCCcceeeeeccc-------------------ceeEEEecCCCcceeeEE
Confidence            345789999999999999    899999999999999999999                   677778889999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |+|.|-  +|||+|.|++-++|.....   ...+.+.++-                      ..|.|+.|+|+..++++|
T Consensus       501 F~P~Gy--YFatas~D~tArLWs~d~~---~PlRifaghl----------------------sDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  501 FAPRGY--YFATASHDQTARLWSTDHN---KPLRIFAGHL----------------------SDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             ecCCce--EEEecCCCceeeeeecccC---Cchhhhcccc----------------------cccceEEECCcccccccC
Confidence            999986  9999999999999997542   2222333321                      237899999999999999


Q ss_pred             cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      +.|.++++||..+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+..+        .+|++.|.++
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------~~Ht~ti~Sl  625 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL--------KGHTGTIYSL  625 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh--------hcccCceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999998        7899999999


Q ss_pred             EEcCCCCEEEEEcCcceEEeCC
Q 023643          258 TLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       258 ~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .|+.+|..||+|+.|++|++||
T Consensus       626 sFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  626 SFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             EEecCCCEEEecCCCCeEEEEE
Confidence            9999999999999999999997

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.5e-41  Score=232.17  Aligned_cols=219  Identities=18%  Similarity=0.239  Sum_probs=189.2

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      -.||+||+++.....+.++.+|...|+++.|..    +|+.+++|+.||+++|||++.                   ...
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~----dgrWMyTgseDgt~kIWdlR~-------------------~~~  117 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC----DGRWMYTGSEDGTVKIWDLRS-------------------LSC  117 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEee----cCeEEEecCCCceEEEEeccC-------------------ccc
Confidence            368999999988778899999999999999999    999999999999999999997                   344


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      .+.++ |..+|+++..+|+..  .|++|..+|.|++||+.+....   ..+..+..                     ..|
T Consensus       118 qR~~~-~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~~~~c~---~~liPe~~---------------------~~i  170 (311)
T KOG0315|consen  118 QRNYQ-HNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLGENSCT---HELIPEDD---------------------TSI  170 (311)
T ss_pred             chhcc-CCCCcceEEecCCcc--eEEeecCCCcEEEEEccCCccc---cccCCCCC---------------------cce
Confidence            44444 779999999999987  8999999999999998754221   11111111                     137


Q ss_pred             eeEEEcCCCCeEEEecCCCeEEEEecCCC------cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ce
Q 023643          163 NAIAVDPQGGAIFSAAGDSCAYCWDVESS------RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KC  235 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~  235 (279)
                      .++...|+|.+++.+.+.|..++|++-..      +++..++.|++.+..+.+||++++|+++|.|.+++||+.... +.
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence            89999999999999999999999998653      567788999999999999999999999999999999999887 45


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ...+        .+|..+++.++||.||+||+||+.|+.+++||
T Consensus       251 e~~l--------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  251 ELVL--------TGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             EEEe--------ecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            5555        78999999999999999999999999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-42  Score=250.32  Aligned_cols=213  Identities=18%  Similarity=0.283  Sum_probs=183.1

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV   96 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   96 (279)
                      +...+.+|.++|.+++|+|    ++..||+|+.|.++|+||+.+                   ..+..+.++|...|.|+
T Consensus       107 CssS~~GH~e~Vl~~~fsp----~g~~l~tGsGD~TvR~WD~~T-------------------eTp~~t~KgH~~WVlcv  163 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSP----TGSRLVTGSGDTTVRLWDLDT-------------------ETPLFTCKGHKNWVLCV  163 (480)
T ss_pred             eccccCCCCCcEEEEEecC----CCceEEecCCCceEEeeccCC-------------------CCcceeecCCccEEEEE
Confidence            3457789999999999999    999999999999999999999                   78899999999999999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-----CC
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-----QG  171 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~  171 (279)
                      +|+|+++  .|++|+.||+|++||..+++  +....+.+| .                     +.|++++|.|     ..
T Consensus       164 awsPDgk--~iASG~~dg~I~lwdpktg~--~~g~~l~gH-~---------------------K~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  164 AWSPDGK--KIASGSKDGSIRLWDPKTGQ--QIGRALRGH-K---------------------KWITALAWEPLHLVPPC  217 (480)
T ss_pred             EECCCcc--hhhccccCCeEEEecCCCCC--cccccccCc-c---------------------cceeEEeecccccCCCc
Confidence            9999999  99999999999999976542  222233332 2                     2478999876     56


Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc-------
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD-------  244 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-------  244 (279)
                      ++|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.+ .+|++||.|++|++|+...|++...+..|..       
T Consensus       218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal  296 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL  296 (480)
T ss_pred             cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence            79999999999999999999999999999999999999643 6899999999999999888776655543321       


Q ss_pred             ----------------------------------------------------------------ccccCcceeeeEEEEc
Q 023643          245 ----------------------------------------------------------------KQLKGVISCVSCITLD  260 (279)
Q Consensus       245 ----------------------------------------------------------------~~~~~~~~~v~~~~~~  260 (279)
                                                                                      ....+|..-|+.+.|+
T Consensus       297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS  376 (480)
T ss_pred             cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence                                                                            1446889999999999


Q ss_pred             CCCCEEEEEcCcceEEeCC
Q 023643          261 ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       261 ~~~~~l~~~~~d~~i~~wd  279 (279)
                      ||++++|++|-|..|++||
T Consensus       377 Pd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             CCccEEEEeecccceeeee
Confidence            9999999999999999997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-41  Score=235.60  Aligned_cols=220  Identities=18%  Similarity=0.313  Sum_probs=190.5

Q ss_pred             CCCceeeecccccccc---ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYRKS---ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      +|-++.+|++.....+   ..+.+.+|...|..+..++    ++++.++++.|+++++||+.+                 
T Consensus        36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----dg~~alS~swD~~lrlWDl~~-----------------   94 (315)
T KOG0279|consen   36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----DGNFALSASWDGTLRLWDLAT-----------------   94 (315)
T ss_pred             cceEEEEEEeccCccccCceeeeeeccceEecceEEcc----CCceEEeccccceEEEEEecC-----------------
Confidence            4678889987654433   3778999999999999999    999999999999999999998                 


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                        +++.+.|.+|...|.+++|+|+..  +++||+.|.+|++|++-.    .+..........                  
T Consensus        95 --g~~t~~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g----~ck~t~~~~~~~------------------  148 (315)
T KOG0279|consen   95 --GESTRRFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG----VCKYTIHEDSHR------------------  148 (315)
T ss_pred             --CcEEEEEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc----cEEEEEecCCCc------------------
Confidence              677889999999999999999998  999999999999999642    222222221101                  


Q ss_pred             CCCCceeEEEcCC--CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          158 PVPENNAIAVDPQ--GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       158 ~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                        ..|+|+.|+|+  ..+|++++.|+++++||+++.+....+.+|++.++.++++|||...++|+.||.+.+||++.++.
T Consensus       149 --~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~  226 (315)
T KOG0279|consen  149 --EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN  226 (315)
T ss_pred             --CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence              14899999998  67999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.+         .|...|.+++|+|+..+|+.+.. ..|+|||
T Consensus       227 lysl---------~a~~~v~sl~fspnrywL~~at~-~sIkIwd  260 (315)
T KOG0279|consen  227 LYSL---------EAFDIVNSLCFSPNRYWLCAATA-TSIKIWD  260 (315)
T ss_pred             eEec---------cCCCeEeeEEecCCceeEeeccC-CceEEEe
Confidence            8887         67789999999998877777654 4599996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-39  Score=225.23  Aligned_cols=224  Identities=16%  Similarity=0.204  Sum_probs=183.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||++|+||+.++  +..+.+.+|...|.+++|+|    |...+++|+.|.+|++|+...                    .
T Consensus        84 D~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~----dn~qivSGSrDkTiklwnt~g--------------------~  137 (315)
T KOG0279|consen   84 DGTLRLWDLATG--ESTRRFVGHTKDVLSVAFST----DNRQIVSGSRDKTIKLWNTLG--------------------V  137 (315)
T ss_pred             cceEEEEEecCC--cEEEEEEecCCceEEEEecC----CCceeecCCCcceeeeeeecc--------------------c
Confidence            899999999987  44778999999999999999    899999999999999999985                    3


Q ss_pred             ccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           82 PDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        82 ~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      +..++..  |.+.|.|++|+|+..+.+|+++|.|++|++||+++.+   ....+.++                      .
T Consensus       138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh----------------------~  192 (315)
T KOG0279|consen  138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---LRTTFIGH----------------------S  192 (315)
T ss_pred             EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---hhhccccc----------------------c
Confidence            3334433  3789999999999544599999999999999987542   22222221                      1


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +.++.++++|||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. +..|+|||+.++.++..+
T Consensus       193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence            237999999999999999999999999999999988886 888999999999877776664 555999999999988887


Q ss_pred             cCCcccc-ccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          240 DPVKDKQ-LKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       240 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+..... .........+++|+++|..|++|-.|+.|++|
T Consensus       271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence            6543211 12234567788999999999999999999998

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.3e-38  Score=236.57  Aligned_cols=235  Identities=22%  Similarity=0.318  Sum_probs=196.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc-----
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ-----   75 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----   75 (279)
                      .||.+|+|+..+   ..+.++..|.++|.++.|+.    +|++|++++.||++.+||.-++.....+.+......     
T Consensus       255 ~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  255 EDGEARIWNKDG---NLISTLGQHKGPIFSLKWNK----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             cCcEEEEEecCc---hhhhhhhccCCceEEEEEcC----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            489999999888   55778889999999999999    899999999999999999988776665554433311     


Q ss_pred             -----------------eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643           76 -----------------QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV  138 (279)
Q Consensus        76 -----------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  138 (279)
                                       ++-..+|+.++.+|.++|.++.|+|.+.  +|+|+|.|++++||.....   .....+..+  
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~---~~~~~l~~H--  400 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQS---NSVHDLQAH--  400 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCC---cchhhhhhh--
Confidence                             0111678899999999999999999998  9999999999999996533   222222222  


Q ss_pred             cceEEeecCCCCCccccCCCCCCceeEEEcCCC---------CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEE
Q 023643          139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG---------GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVA  209 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~  209 (279)
                                          .+.|..+.|+|++         ..+++++.|++|++||+..+.++..|..|+.+|++++|
T Consensus       401 --------------------skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvaf  460 (524)
T KOG0273|consen  401 --------------------SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF  460 (524)
T ss_pred             --------------------ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEe
Confidence                                2236777777754         36899999999999999999999999999999999999


Q ss_pred             cCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          210 RNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       210 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +|+|+++++|+.||.|.+|+.++++..+.+.         -...|..++|+.+|.+|..+-.|+.+++-
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~---------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvl  520 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ---------GTGGIFELCWNAAGDKLGACASDGSVCVL  520 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeec---------CCCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence            9999999999999999999999999999873         34569999999999999999999988764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=220.40  Aligned_cols=226  Identities=19%  Similarity=0.303  Sum_probs=194.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.+-|||.-+..+  ...++....-|..++|+|    .++++|+|+-|+...||++.+......             .
T Consensus        75 qDGklIvWDs~TtnK--~haipl~s~WVMtCA~sP----Sg~~VAcGGLdN~Csiy~ls~~d~~g~-------------~  135 (343)
T KOG0286|consen   75 QDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSP----SGNFVACGGLDNKCSIYPLSTRDAEGN-------------V  135 (343)
T ss_pred             cCCeEEEEEcccccc--eeEEecCceeEEEEEECC----CCCeEEecCcCceeEEEeccccccccc-------------c
Confidence            389999999666533  555666778999999999    899999999999999999986422111             2


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ...+.+.+|++.+.++.|.+++   .|+|+|.|.+.-+||+++.   +....+.+|..                      
T Consensus       136 ~v~r~l~gHtgylScC~f~dD~---~ilT~SGD~TCalWDie~g---~~~~~f~GH~g----------------------  187 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFLDDN---HILTGSGDMTCALWDIETG---QQTQVFHGHTG----------------------  187 (343)
T ss_pred             eeeeeecCccceeEEEEEcCCC---ceEecCCCceEEEEEcccc---eEEEEecCCcc----------------------
Confidence            4456788999999999999966   7999999999999998654   44555555332                      


Q ss_pred             CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      .|.+++++| +++.+++|+.|+..++||++.+.+++.|.+|+..|.+++|.|+|.-+++|+.|++.++||+|..+.+..+
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y  267 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY  267 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence            378999999 9999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..      ..-..+|++++|+..|++|++|..|.++.+||
T Consensus       268 s~------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  268 SH------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             cc------CcccCCceeEEEcccccEEEeeecCCceeEee
Confidence            64      34456899999999999999999999999998

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-38  Score=229.36  Aligned_cols=241  Identities=20%  Similarity=0.287  Sum_probs=200.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |++|++||..+++.  ...+++|.+.|..++|+.    .|.+||+++.|-.+++||..+.                  .+
T Consensus       129 d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a----~Gk~l~tcSsDl~~~LWd~~~~------------------~~  184 (406)
T KOG0295|consen  129 DATIKVFDTETGEL--ERSLRGHTDSVFDISFDA----SGKYLATCSSDLSAKLWDFDTF------------------FR  184 (406)
T ss_pred             CceEEEEEccchhh--hhhhhccccceeEEEEec----CccEEEecCCccchhheeHHHH------------------HH
Confidence            88999999998854  889999999999999999    8999999999999999999875                  67


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc----------cceEEe-ecCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV----------KPVLDL-VNHQHK  150 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~  150 (279)
                      +++.+.+|+..|.+++|-|.+.  ++++++.|.+|+.|++.++   .+...+.++..          ..+... .+..+-
T Consensus       185 c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl  259 (406)
T KOG0295|consen  185 CIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence            8888999999999999999998  9999999999999998764   23333322211          011000 111111


Q ss_pred             Cccc---------cCCCCCCceeEEEcCC---------------CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE
Q 023643          151 GPWG---------ALSPVPENNAIAVDPQ---------------GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC  206 (279)
Q Consensus       151 ~~~~---------~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  206 (279)
                      ..|.         ...++..|.|++|.|.               ++.+.+++.|++|++||+.++.++.++.+|.++|+.
T Consensus       260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence            1111         1234456888888763               248899999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          207 IVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       207 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++|+|.|+||+++..|+++++||++++++...+        ..|...|+++.|+.+..+++||+-|.++++|.
T Consensus       340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~--------~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL--------EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEcCCCeEEEEEecCCcEEEEEeccceeeecc--------CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            999999999999999999999999999999999        67888999999999999999999999999983

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1e-39  Score=236.76  Aligned_cols=211  Identities=25%  Similarity=0.451  Sum_probs=186.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |.+|+|||.+..  .+++.+.+|++.|.|+.|..      ..+++|++|.+|+|||+++                   ++
T Consensus       216 DnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~t-------------------ge  268 (499)
T KOG0281|consen  216 DNTIKIWDKNSL--ECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNT-------------------GE  268 (499)
T ss_pred             cCceEEeccccH--HHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccC-------------------Cc
Confidence            789999998887  56888999999999999976      6999999999999999999                   89


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ++.++-+|...|..+.|+..    +++|++.|.++.+||+...........+.++. .                     +
T Consensus       269 ~l~tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr-A---------------------a  322 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-A---------------------A  322 (499)
T ss_pred             hhhHHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhh-h---------------------h
Confidence            99999999999999999854    99999999999999987543322333333432 2                     3


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |+.+.|+  .+++++++.|.+|++|++.+.+.++++.+|.-.|-|+.+.  ++++++||.|.+|++||+..|.++..+  
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL--  396 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL--  396 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH--
Confidence            6788885  5699999999999999999999999999999999998874  899999999999999999999999999  


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .+|+.-|.++.|+  .+.+++|+.||+|++||
T Consensus       397 ------eGHEeLvRciRFd--~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  397 ------EGHEELVRCIRFD--NKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             ------hchHHhhhheeec--CceeeeccccceEEEEe
Confidence                  7999999999995  67899999999999997

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.3e-37  Score=231.21  Aligned_cols=220  Identities=19%  Similarity=0.232  Sum_probs=182.7

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...|++++|+.    +|.+||+|+.||.+++|+..                    +..+.++..|.+||.++.|+..+. 
T Consensus       235 nkdVT~L~Wn~----~G~~LatG~~~G~~riw~~~--------------------G~l~~tl~~HkgPI~slKWnk~G~-  289 (524)
T KOG0273|consen  235 NKDVTSLDWNN----DGTLLATGSEDGEARIWNKD--------------------GNLISTLGQHKGPIFSLKWNKKGT-  289 (524)
T ss_pred             cCCcceEEecC----CCCeEEEeecCcEEEEEecC--------------------chhhhhhhccCCceEEEEEcCCCC-
Confidence            46799999999    99999999999999999998                    577888999999999999999998 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCc-----------------ccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNH-----------------VKPVLDLVNHQHKGPWGALSPVPENNAIAV  167 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  167 (279)
                       +|++++.|+++.+||..+.... ....+....                 ...+.-++-...........|.+.|.++.|
T Consensus       290 -yilS~~vD~ttilwd~~~g~~~-q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  290 -YILSGGVDGTTILWDAHTGTVK-QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW  367 (524)
T ss_pred             -EEEeccCCccEEEEeccCceEE-EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence             9999999999999997543211 111111100                 001111111122222223447778999999


Q ss_pred             cCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC---------cEEEEecCCCeEEEEeCCCCceEEE
Q 023643          168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST---------NQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       168 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      +|.+.+|++++.|++++||........+.+..|...|+.+.|+|.|         ..+++++.|++|++||+..+.++.+
T Consensus       368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence            9999999999999999999999899999999999999999999864         3799999999999999999999999


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +        ..|..+|.+++|+|+|+++|+|+.||.|.+|+
T Consensus       448 f--------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  448 L--------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             e--------ccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            8        79999999999999999999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.2e-37  Score=213.31  Aligned_cols=225  Identities=13%  Similarity=0.226  Sum_probs=189.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.+||+|...++  .+..++....+.|..+...|    ++..||+++.- .||+||+++..                 .
T Consensus        18 YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTp----dk~~LAaa~~q-hvRlyD~~S~n-----------------p   73 (311)
T KOG0315|consen   18 YDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITP----DKKDLAAAGNQ-HVRLYDLNSNN-----------------P   73 (311)
T ss_pred             CcceeeeeehhcC--eEEEEEecCccceeeEEEcC----CcchhhhccCC-eeEEEEccCCC-----------------C
Confidence            4889999998888  55888887789999999999    89999998775 79999999864                 4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .|+.++.+|++.|+++.|..++.  .++|||.||+++|||++..   .+...++.                       ..
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~---~~qR~~~~-----------------------~s  125 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSL---SCQRNYQH-----------------------NS  125 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCc---ccchhccC-----------------------CC
Confidence            58899999999999999999998  9999999999999999852   11111111                       11


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +|+++..+|+...|++|..+|.|++||+....+.+.+. .....|.++...|+|.+++.+...|..++|++...+....+
T Consensus       126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l  205 (311)
T KOG0315|consen  126 PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL  205 (311)
T ss_pred             CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence            47999999999999999999999999999886666554 34578999999999999999999999999999876544444


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..  ++..|+..+..+.+||++++||++|.|.+++||+
T Consensus       206 ~P~~--k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  206 EPVH--KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             eEhh--heecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence            3322  3478999999999999999999999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-39  Score=235.55  Aligned_cols=219  Identities=15%  Similarity=0.241  Sum_probs=192.2

Q ss_pred             CCCceeeeccccccccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .+|.|++|+++-..   ++.. ..|...|.+++|+|    +...+++++.||+|+|||...                   
T Consensus       158 ~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSp----nDskF~t~SdDg~ikiWdf~~-------------------  211 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSP----NDSKFLTCSDDGTIKIWDFRM-------------------  211 (464)
T ss_pred             CCceEEecccchhh---hHHhhHhhhhhhheeccCC----CCceeEEecCCCeEEEEeccC-------------------
Confidence            37899999977643   3333 34559999999999    888999999999999999987                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ..+...+++|.-.|.+++|+|...  +++++|.|..|++||.++.   .++..+.++..                     
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWDprSg---~cl~tlh~HKn---------------------  265 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWDPRSG---SCLATLHGHKN---------------------  265 (464)
T ss_pred             CchhheeccCCCCcceeccCCccc--eeEEccCCceeEeecCCCc---chhhhhhhccc---------------------
Confidence            566677899999999999999987  9999999999999997654   45555554332                     


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                       .|..+.|+|++++|++++.|..++++|+++.+.++.+++|...++++.|+| ...+|.+|+.||.|..|.+...+++..
T Consensus       266 -tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~  344 (464)
T KOG0284|consen  266 -TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE  344 (464)
T ss_pred             -eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence             378999999999999999999999999999999999999999999999999 578999999999999999987777777


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.       .+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       345 i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  345 IP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             CC-------cccccceeeeeccccceeEeecCCCcceeeec
Confidence            75       68999999999999999999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-37  Score=241.66  Aligned_cols=219  Identities=19%  Similarity=0.334  Sum_probs=198.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|+|.|||.++.  ..++.+.....+|.+..|-+    ..+.+++|+.|..|+||+.++                   .+
T Consensus        34 nG~V~IWnyetq--tmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt-------------------~e   88 (794)
T KOG0276|consen   34 NGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNT-------------------GE   88 (794)
T ss_pred             cCeeEEEecccc--eeeeeeeecccchhhheeee----ccceEEEecCCceEEEEeccc-------------------ce
Confidence            699999998887  45888888889999999999    899999999999999999999                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+..|..|.+.|.+++.+|..+  +++|+|.|-+|++||.+.  .-.+...+.+|..                      .
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~H----------------------y  142 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWEN--EWACEQTFEGHEH----------------------Y  142 (794)
T ss_pred             eeEEeeccccceeeeeecCCCC--eEEecCCccEEEEeeccC--ceeeeeEEcCcce----------------------E
Confidence            8999999999999999999998  999999999999999864  3344455555432                      2


Q ss_pred             ceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          162 NNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       162 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      |.+++|+| |.+.+++++-|++|++|.+.+..+..++++|...|.|+.|-+.  ..+|++|+.|.+|+|||.++..|+++
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T  222 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT  222 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence            78999999 5669999999999999999999999999999999999999874  57999999999999999999999999


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +        .+|...|+.+.|+|.-.++++||+||++++|.
T Consensus       223 L--------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  223 L--------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             h--------hcccccceEEEecCCCcEEEEecCCccEEEec
Confidence            9        79999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-36  Score=214.34  Aligned_cols=206  Identities=17%  Similarity=0.292  Sum_probs=181.9

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      .+.+++|.+.|.++.|++    |.++|++++.||.+.|||.-+                   ...++.+.-....|...+
T Consensus        48 rr~LkGH~~Ki~~~~ws~----Dsr~ivSaSqDGklIvWDs~T-------------------tnK~haipl~s~WVMtCA  104 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWST----DSRRIVSASQDGKLIVWDSFT-------------------TNKVHAIPLPSSWVMTCA  104 (343)
T ss_pred             EEEecccccceeeeEecC----CcCeEEeeccCCeEEEEEccc-------------------ccceeEEecCceeEEEEE
Confidence            468899999999999999    999999999999999999988                   455666666778899999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccC---cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTES---KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      |+|.++  +++.|+.|+...||++......   .....+.++ .                     +.+.|+.|-+ ...|
T Consensus       105 ~sPSg~--~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH-t---------------------gylScC~f~d-D~~i  159 (343)
T KOG0286|consen  105 YSPSGN--FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH-T---------------------GYLSCCRFLD-DNHI  159 (343)
T ss_pred             ECCCCC--eEEecCcCceeEEEecccccccccceeeeeecCc-c---------------------ceeEEEEEcC-CCce
Confidence            999998  9999999999999999743111   122222222 2                     2368899987 5678


Q ss_pred             EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee
Q 023643          175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC  253 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  253 (279)
                      ++++.|.+.-+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.+.+.+        .+|...
T Consensus       160 lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF--------~ghesD  231 (343)
T KOG0286|consen  160 LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF--------EGHESD  231 (343)
T ss_pred             EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee--------cccccc
Confidence            9999999999999999999999999999999999999 8999999999999999999999999999        799999


Q ss_pred             eeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          254 VSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       254 v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |++++|.|+|.-+++|+.|++.++||
T Consensus       232 INsv~ffP~G~afatGSDD~tcRlyD  257 (343)
T KOG0286|consen  232 INSVRFFPSGDAFATGSDDATCRLYD  257 (343)
T ss_pred             cceEEEccCCCeeeecCCCceeEEEe
Confidence            99999999999999999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.2e-38  Score=233.60  Aligned_cols=217  Identities=20%  Similarity=0.325  Sum_probs=187.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|...+|+......  ...+..|..+|.++.|++    ++.++++|+.+|.|++|+.+-                    .
T Consensus       117 SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqpnm--------------------n  170 (464)
T KOG0284|consen  117 SGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQPNM--------------------N  170 (464)
T ss_pred             cccEEEecCceeeH--HHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEecccch--------------------h
Confidence            57888999655432  234567999999999999    999999999999999999984                    4


Q ss_pred             ccccccCC-ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           82 PDGFLHGH-DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        82 ~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .+..++.| ...|.+++|+|+..  .|++++.||+|+|||....   .....+.++.-                      
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~---kee~vL~GHgw----------------------  223 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMP---KEERVLRGHGW----------------------  223 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCC---chhheeccCCC----------------------
Confidence            45556655 48999999999887  9999999999999997643   22233344322                      


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.+++|+|.-.++++|+.|..|++||.++++++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.++ 
T Consensus       224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-  302 (464)
T KOG0284|consen  224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-  302 (464)
T ss_pred             CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-
Confidence            3789999999999999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             CCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                             ++|+..|+++.|+| ...+|.+|+.||.|..|.
T Consensus       303 -------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~  335 (464)
T KOG0284|consen  303 -------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV  335 (464)
T ss_pred             -------hcchhhheeeccccccccceeeccCCCceEEEe
Confidence                   78999999999999 456788999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2e-37  Score=245.49  Aligned_cols=224  Identities=20%  Similarity=0.375  Sum_probs=186.2

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccc-----cccC-----Cc--ccceeeeccccc
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLP-----LGLS-----NS--KVQQLLGIEPDG   84 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~-----~~--~~~~~~~~~~~~   84 (279)
                      ++.++..-...++|..|++    ++.+||.|..|-.|++|.+...+....     +...     ..  ...+........
T Consensus       370 c~YT~~nt~~~v~ca~fSd----dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSD----DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             EEEEEEEcCCcceeEeecC----CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence            3445555567899999999    899999999999999999985321110     0000     00  000011133445


Q ss_pred             cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      ++.+|.++|.+..|+|+.+  +|+++|.|+++|+|.+++.   .....+++ |..|                     |..
T Consensus       446 ~L~GH~GPVyg~sFsPd~r--fLlScSED~svRLWsl~t~---s~~V~y~G-H~~P---------------------Vwd  498 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRR--FLLSCSEDSSVRLWSLDTW---SCLVIYKG-HLAP---------------------VWD  498 (707)
T ss_pred             EeecCCCceeeeeeccccc--ceeeccCCcceeeeecccc---eeEEEecC-CCcc---------------------eee
Confidence            6889999999999999998  9999999999999998754   33444443 4444                     578


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643          165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD  244 (279)
Q Consensus       165 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  244 (279)
                      +.|+|-|-++++++.|++-++|......+++.|.+|.+.|.|+.|+|+..|+++||.|.++|+||+.+|..++.+     
T Consensus       499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-----  573 (707)
T KOG0263|consen  499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-----  573 (707)
T ss_pred             EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-----
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          245 KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                         .+|..+|++++|+|+|++|++|+.||.|.+||
T Consensus       574 ---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  574 ---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWD  605 (707)
T ss_pred             ---cCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence               79999999999999999999999999999997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.8e-36  Score=241.25  Aligned_cols=225  Identities=20%  Similarity=0.332  Sum_probs=190.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|+.+++|+........+..+.+|...|..++|+|    ++.++++++.|++|+|||+...                  +
T Consensus       179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~----d~~~l~s~s~D~tiriwd~~~~------------------~  236 (456)
T KOG0266|consen  179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP----DGSYLLSGSDDKTLRIWDLKDD------------------G  236 (456)
T ss_pred             CCCcEEEeecccccchhhccccccccceeeeEECC----CCcEEEEecCCceEEEeeccCC------------------C
Confidence            47899999986554234666789999999999999    9999999999999999999442                  5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ..++++++|...|++++|+|+++  ++++|+.|++|++||+++   ......+.++..                      
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~----------------------  289 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRT---GECVRKLKGHSD----------------------  289 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccC---CeEEEeeeccCC----------------------
Confidence            77899999999999999999997  999999999999999875   345555554432                      


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeecCCcc--eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKGHSDY--LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      .|++++|++++.+|++++.|+.|++||+.++.  ++..+..+...  +++++|+|++.++++++.|+.+++||++.++..
T Consensus       290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            37999999999999999999999999999998  56777776655  999999999999999999999999999999999


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+..+..    . ...+.+...++.+.++++|+.|+.|.+||
T Consensus       370 ~~~~~~~~----~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  370 GTYTGHSN----L-VRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             eeecccCC----c-ceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            99854331    1 02344455678899999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-36  Score=237.82  Aligned_cols=217  Identities=19%  Similarity=0.319  Sum_probs=187.0

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      |.+-||+.+....  +-...+|...+++++++|    ||+++|+|+.||.|+|||..+                   +-+
T Consensus       330 gQLlVweWqsEsY--VlKQQgH~~~i~~l~YSp----Dgq~iaTG~eDgKVKvWn~~S-------------------gfC  384 (893)
T KOG0291|consen  330 GQLLVWEWQSESY--VLKQQGHSDRITSLAYSP----DGQLIATGAEDGKVKVWNTQS-------------------GFC  384 (893)
T ss_pred             ceEEEEEeeccce--eeeccccccceeeEEECC----CCcEEEeccCCCcEEEEeccC-------------------ceE
Confidence            5778899887643  566778999999999999    999999999999999999998                   788


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      ..+|..|+..|+.+.|+..++  .+++++.||+|+.||+...   .....+......                     +.
T Consensus       385 ~vTFteHts~Vt~v~f~~~g~--~llssSLDGtVRAwDlkRY---rNfRTft~P~p~---------------------Qf  438 (893)
T KOG0291|consen  385 FVTFTEHTSGVTAVQFTARGN--VLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPI---------------------QF  438 (893)
T ss_pred             EEEeccCCCceEEEEEEecCC--EEEEeecCCeEEeeeeccc---ceeeeecCCCce---------------------ee
Confidence            899999999999999999998  9999999999999998643   233333322111                     24


Q ss_pred             eeEEEcCCCCeEEEecCCC-eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEEec
Q 023643          163 NAIAVDPQGGAIFSAAGDS-CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKVID  240 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~  240 (279)
                      .|++..|.|..+.+|+.|. .|.+|++++|+.+-.+.+|+++|.+++|+|.+..|+++|.|.+|++||+-.. ....++ 
T Consensus       439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-  517 (893)
T KOG0291|consen  439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-  517 (893)
T ss_pred             eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-
Confidence            7999999999999888875 5999999999999999999999999999999999999999999999998654 234444 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .+...+..++|+|+|+-|++++-||.|.+||
T Consensus       518 --------~i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  518 --------EIRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             --------eeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence                    4455789999999999999999999999997

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-36  Score=211.65  Aligned_cols=221  Identities=15%  Similarity=0.219  Sum_probs=186.2

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.+++||... ....+..++.|..+|.++.|++.   +...+++++.|++|++|+.+.                   .+
T Consensus        82 DGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~---~r~~~ltsSWD~TiKLW~~~r-------------------~~  138 (311)
T KOG0277|consen   82 DGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTV---RRRIFLTSSWDGTIKLWDPNR-------------------PN  138 (311)
T ss_pred             CceEEEeccCC-CCcchhHHHhhhhheEEeccccc---cceeEEeeccCCceEeecCCC-------------------Cc
Confidence            89999999443 33567889999999999999995   788899999999999999998                   67


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+.++.+|...|....|+|... ++++++|.|+++++||++...  +... +..+.                      .+
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~g--k~~~-i~ah~----------------------~E  192 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPG--KFMS-IEAHN----------------------SE  192 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCC--ceeE-EEecc----------------------ce
Confidence            7889999999999999999876 599999999999999987531  1111 22211                      13


Q ss_pred             ceeEEEcC-CCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCc-eEE
Q 023643          162 NNAIAVDP-QGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGK-CIK  237 (279)
Q Consensus       162 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~-~~~  237 (279)
                      |.|+.|+. +.+.+++|+.|+.|+.||+++- .++.++.+|.-.|+.+.|||. ...|++++.|-+++|||...+. .+.
T Consensus       193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE  272 (311)
T ss_pred             eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence            78999986 5668999999999999999974 678889999999999999995 6789999999999999998554 334


Q ss_pred             EecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                      +.        ..|+..|..+.|++ ++.++|+++.|..+.||+
T Consensus       273 ~~--------~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  273 TV--------DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hh--------hccceEEeccccccccCceeeecccccceeeec
Confidence            44        57889999999998 577899999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.8e-36  Score=217.08  Aligned_cols=217  Identities=14%  Similarity=0.245  Sum_probs=194.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||++++|||+.+++  +..++.+|...|..+++++    ...+|++++.|+.|+.||++.                   .
T Consensus       171 ~DrtikIwDlatg~--LkltltGhi~~vr~vavS~----rHpYlFs~gedk~VKCwDLe~-------------------n  225 (460)
T KOG0285|consen  171 ADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSK----RHPYLFSAGEDKQVKCWDLEY-------------------N  225 (460)
T ss_pred             CCceeEEEEcccCe--EEEeecchhheeeeeeecc----cCceEEEecCCCeeEEEechh-------------------h
Confidence            69999999999984  4668999999999999999    789999999999999999998                   6


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.++.+.+|-..|.+++.+|.-.  .|+||+.|.++++||+++.   ..+..+.++..                      
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr---~~V~~l~GH~~----------------------  278 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTR---ASVHVLSGHTN----------------------  278 (460)
T ss_pred             hhHHHhccccceeEEEeccccce--eEEecCCcceEEEeeeccc---ceEEEecCCCC----------------------
Confidence            78889999999999999999987  9999999999999998753   34444444332                      


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|..+.+.|....+++|+.|++|++||++.++....+..|...+++++.+|....+++++.|. |+-|++..|..+..+ 
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl-  356 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL-  356 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-
Confidence            368889999888999999999999999999999999999999999999999999999999886 899999999998887 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|+..|.+++...|+ ++++|+.+|.+.+||
T Consensus       357 -------sgh~~iintl~~nsD~-v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  357 -------SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD  387 (460)
T ss_pred             -------ccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence                   7999999999988664 688999999999997

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=215.91  Aligned_cols=205  Identities=20%  Similarity=0.321  Sum_probs=184.6

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      +..+.+.+|.+-|.++++.|    ...+|++|+.|++|+|||+.+                   ++...++.+|...|..
T Consensus       142 Kl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlat-------------------g~LkltltGhi~~vr~  198 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLAT-------------------GQLKLTLTGHIETVRG  198 (460)
T ss_pred             eehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEccc-------------------CeEEEeecchhheeee
Confidence            34556789999999999999    889999999999999999999                   6778889999999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      +++++-..  |+++++.|+.|+.||++..   +.+..+.++-.                      .|.|++.+|.-..|+
T Consensus       199 vavS~rHp--YlFs~gedk~VKCwDLe~n---kvIR~YhGHlS----------------------~V~~L~lhPTldvl~  251 (460)
T KOG0285|consen  199 VAVSKRHP--YLFSAGEDKQVKCWDLEYN---KVIRHYHGHLS----------------------GVYCLDLHPTLDVLV  251 (460)
T ss_pred             eeecccCc--eEEEecCCCeeEEEechhh---hhHHHhccccc----------------------eeEEEeccccceeEE
Confidence            99999998  9999999999999998643   55556665432                      378999999999999


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      +|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++||.|++|++||++.|+...++        ..|...|.
T Consensus       252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl--------t~hkksvr  323 (460)
T KOG0285|consen  252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL--------THHKKSVR  323 (460)
T ss_pred             ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEee--------ecccceee
Confidence            9999999999999999999999999999999999998889999999999999999999999998        78889999


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++.+|....+|+++.|. |+-|+
T Consensus       324 al~lhP~e~~fASas~dn-ik~w~  346 (460)
T KOG0285|consen  324 ALCLHPKENLFASASPDN-IKQWK  346 (460)
T ss_pred             EEecCCchhhhhccCCcc-ceecc
Confidence            999999999999998875 55553

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=201.47  Aligned_cols=212  Identities=17%  Similarity=0.300  Sum_probs=177.4

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cCCccCeE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HGHDGPAY   94 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~   94 (279)
                      ..++.+++|.+.++.++|+|.   .|..||+++.|..|++|+......                ..+...+ .+|+..|.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~~~s----------------~~ck~vld~~hkrsVR   65 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPG---KGVILASCGTDKAVRIWSTSSGDS----------------WTCKTVLDDGHKRSVR   65 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccC---CceEEEeecCCceEEEEecCCCCc----------------EEEEEeccccchheee
Confidence            345678899999999999992   378999999999999999984211                2233333 36999999


Q ss_pred             EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643           95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      +++|+|.++  +|+++|.|.++.||.-.. ..-++...+.++..                      .|.|++|+++|++|
T Consensus        66 svAwsp~g~--~La~aSFD~t~~Iw~k~~-~efecv~~lEGHEn----------------------EVK~Vaws~sG~~L  120 (312)
T KOG0645|consen   66 SVAWSPHGR--YLASASFDATVVIWKKED-GEFECVATLEGHEN----------------------EVKCVAWSASGNYL  120 (312)
T ss_pred             eeeecCCCc--EEEEeeccceEEEeecCC-CceeEEeeeecccc----------------------ceeEEEEcCCCCEE
Confidence            999999998  999999999999998442 23344444444432                      48999999999999


Q ss_pred             EEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC---CceEEEecCCcccccc
Q 023643          175 FSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS---GKCIKVIDPVKDKQLK  248 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~  248 (279)
                      |+++.|..|-||.+...   ++...++.|..-|..+.|+|...+|+++|.|++|++|+-..   -.+.+++        .
T Consensus       121 ATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl--------~  192 (312)
T KOG0645|consen  121 ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL--------D  192 (312)
T ss_pred             EEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe--------c
Confidence            99999999999998743   67788999999999999999999999999999999998762   3567777        7


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          249 GVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +|...|.+++|++.|..|++++.|++++||.
T Consensus       193 g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  193 GHENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             CccceEEEEEecCCCceEEEecCCcceEeee
Confidence            8888999999999999999999999999993

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3e-34  Score=218.19  Aligned_cols=264  Identities=15%  Similarity=0.236  Sum_probs=196.8

Q ss_pred             CCCceeeeccccccccceeeee---ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYRKSILKERE---ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .||.|.+||-++++.  +..+.   +|.+.|++++|+|    |+..+++++.|.+++|||+.+.+...++.......++.
T Consensus       210 sDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsP----Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq  283 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSP----DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ  283 (603)
T ss_pred             CCccEEEEcCCCccE--EEEecCCCCccccEEEEEECC----CCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence            489999999777643  44444   8999999999999    99999999999999999999876665444333311111


Q ss_pred             ee------------------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce---
Q 023643           78 LG------------------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP---  130 (279)
Q Consensus        78 ~~------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~---  130 (279)
                      +.                        ..+...+.+|...|+++..+|+++  +|++|+.||.|.-|+..........   
T Consensus       284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~  361 (603)
T KOG0318|consen  284 VGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKG  361 (603)
T ss_pred             EEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeeccCceEEEEecCCcccccccccc
Confidence            11                        557788899999999999999998  9999999999999998654332111   


Q ss_pred             -----eeeccCcccceEEe-----------ecCCCC---------Cccc----------------------------cCC
Q 023643          131 -----INLQGNHVKPVLDL-----------VNHQHK---------GPWG----------------------------ALS  157 (279)
Q Consensus       131 -----~~~~~~~~~~~~~~-----------~~~~~~---------~~~~----------------------------~~~  157 (279)
                           ..+.......+...           ......         .|..                            ...
T Consensus       362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~  441 (603)
T KOG0318|consen  362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP  441 (603)
T ss_pred             ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence                 11111110111111           000000         0000                            011


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE--EEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK--MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      ......+++++|++..+++|+.|+.|++|.+......  ..+..|.++|++++|+|++.+|+++...+.+.+||+.+.+.
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence            1234578999999999999999999999999865533  34567999999999999999999999999999999998776


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ....       ..-|...|.+++|+|+..++|||+-|..|.+|+
T Consensus       522 ~~~~-------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  522 KTNR-------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             ecce-------eeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            3222       145999999999999999999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-35  Score=232.43  Aligned_cols=229  Identities=13%  Similarity=0.201  Sum_probs=195.9

Q ss_pred             CCceeeeccccc--cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAY--RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |.++++|.+++.  ...++....+|.+.|.+++++..   ...+|++++.|++|++|++...+....         .+. 
T Consensus       386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~---~asffvsvS~D~tlK~W~l~~s~~~~~---------~~~-  452 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL---GASFFVSVSQDCTLKLWDLPKSKETAF---------PIV-  452 (775)
T ss_pred             CceEEEEEecCCcchhhhhhhhcccccccceeeeccc---CccEEEEecCCceEEEecCCCcccccc---------cce-
Confidence            678999977433  33556778899999999999873   678999999999999999986221111         000 


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .....+...|...|++++.+|+.+  +++|||.|.+.+||+++   .......+.+|..                     
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~ndk--LiAT~SqDktaKiW~le---~~~l~~vLsGH~R---------------------  506 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAPNDK--LIATGSQDKTAKIWDLE---QLRLLGVLSGHTR---------------------  506 (775)
T ss_pred             ehhhHHHHhhcccccceEecCCCc--eEEecccccceeeeccc---CceEEEEeeCCcc---------------------
Confidence            233345567999999999999998  99999999999999986   3344445555433                     


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                       .|.|+.|+|..+.+++++.|++|+||.+.+..++.+|.+|...|..+.|-.++..|++++.||.|++|++.++.++.++
T Consensus       507 -Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  507 -GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             -ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence             3789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                              ..|+..|++++-+|....++||+.||.|.+|
T Consensus       586 --------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  586 --------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             --------hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence                    7899999999999999999999999999998

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.6e-34  Score=201.69  Aligned_cols=218  Identities=18%  Similarity=0.239  Sum_probs=183.5

Q ss_pred             CCceeeeccccc-cccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAY-RKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |..||+|+...+ ...+...+ .+|+..|.+++|+|    .|++||+|+.|.++.||.-...+                 
T Consensus        36 Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp----~g~~La~aSFD~t~~Iw~k~~~e-----------------   94 (312)
T KOG0645|consen   36 DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP----HGRYLASASFDATVVIWKKEDGE-----------------   94 (312)
T ss_pred             CceEEEEecCCCCcEEEEEeccccchheeeeeeecC----CCcEEEEeeccceEEEeecCCCc-----------------
Confidence            678999998742 22333222 47999999999999    89999999999999999987644                 


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .+++.++.||+..|.+++|+++|.  +||++++|.+|-||.+....+..+...++.|..                     
T Consensus        95 fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Htq---------------------  151 (312)
T KOG0645|consen   95 FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ---------------------  151 (312)
T ss_pred             eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc---------------------
Confidence            677889999999999999999998  999999999999999986555555555555332                     


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecC---CCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVE---SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                       .|..+.|+|...+|++++.|.+|++|+-.   ..+++.++.+|.+.|.+++|++.|..|++++.|++++||...+    
T Consensus       152 -DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~----  226 (312)
T KOG0645|consen  152 -DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT----  226 (312)
T ss_pred             -cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc----
Confidence             26789999999999999999999999876   3578999999999999999999999999999999999998762    


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                       .+.       ..|...+..++|.  ...|++++.|+.|++|
T Consensus       227 -~~~-------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  227 -DLS-------GMHSRALYDVPWD--NGVIASGGGDDAIRLF  258 (312)
T ss_pred             -Ccc-------hhcccceEeeeec--ccceEeccCCCEEEEE
Confidence             221       3566788899998  5679999999999987

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.4e-35  Score=214.39  Aligned_cols=235  Identities=21%  Similarity=0.243  Sum_probs=189.0

Q ss_pred             CCCceeeecccccc--ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc------
Q 023643            1 MCGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS------   72 (279)
Q Consensus         1 ~dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------   72 (279)
                      +|.++++|..+...  ...++.-.+|...|-+++..+    ++.++++|+.|..|.||+.... ....++-...      
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~----sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS----SGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRRRKKQ  241 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecC----CCCeEEeecccceeeecccCCC-ccccccccchhhhhhh
Confidence            58899999866554  233444559999999999999    9999999999999999994332 2222221111      


Q ss_pred             -ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643           73 -KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG  151 (279)
Q Consensus        73 -~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (279)
                       ...+.....|+.++.+|.++|.++.|++.+   .+.+++.|.+|+.||+.+..   ......+..              
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~---v~yS~SwDHTIk~WDletg~---~~~~~~~~k--------------  301 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWSDAT---VIYSVSWDHTIKVWDLETGG---LKSTLTTNK--------------  301 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEcCCC---ceEeecccceEEEEEeeccc---ceeeeecCc--------------
Confidence             112222367888999999999999999954   89999999999999987642   222222211              


Q ss_pred             ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc---EEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEE
Q 023643          152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR---IKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARI  227 (279)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~v  227 (279)
                               .++|++.+|..++|++|+.|..|++||.+++.   ..++|.+|.+.|.++.|+|. ..+|++|+.|+++++
T Consensus       302 ---------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  302 ---------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL  372 (423)
T ss_pred             ---------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence                     26899999999999999999999999999763   55688999999999999995 677999999999999


Q ss_pred             EeCCCCc-eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          228 WDCKSGK-CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       228 wd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ||+|+.+ ++..+        .+|...|.++.|. ++.+|++|+.|++++++
T Consensus       373 WDvRS~k~plydI--------~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  373 WDVRSTKAPLYDI--------AGHNDKVLSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             EEeccCCCcceee--------ccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence            9999988 88998        7899999999998 46789999999999987

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=6.2e-34  Score=229.62  Aligned_cols=229  Identities=12%  Similarity=0.111  Sum_probs=172.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|++|+....  ..+..+.+|.+.|.+++|+|.   ++.+||+|+.||+|+|||+.+......          .. ..
T Consensus        53 ~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~---~~~lLASgS~DgtIrIWDi~t~~~~~~----------~i-~~  116 (568)
T PTZ00420         53 IGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPC---FSEILASGSEDLTIRVWEIPHNDESVK----------EI-KD  116 (568)
T ss_pred             eeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCC---CCCEEEEEeCCCeEEEEECCCCCcccc----------cc-cc
Confidence            577888886554  346678899999999999993   478999999999999999976321000          00 13


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ++..+.+|...|.+++|+|++. .+|++++.|++|++||+++..   ....+.. .                      ..
T Consensus       117 p~~~L~gH~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~---~~~~i~~-~----------------------~~  169 (568)
T PTZ00420        117 PQCILKGHKKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEK---RAFQINM-P----------------------KK  169 (568)
T ss_pred             ceEEeecCCCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCc---EEEEEec-C----------------------Cc
Confidence            4456788999999999999886 356899999999999987542   1111111 0                      12


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE-----EEEcCCCcEEEEecCCC----eEEEEeCCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC-----IVARNSTNQIVTGSEDG----TARIWDCKS  232 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~-----i~~~~~~~~l~~~~~d~----~i~vwd~~~  232 (279)
                      |.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+.+.+     ..|++++.+|++++.|+    +|+|||++.
T Consensus       170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            789999999999999999999999999999999999999876533     23558888999887764    799999995


Q ss_pred             -CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          233 -GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       233 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       ++++..+..      ..+...+......+++.++++|+.|+.|++|+
T Consensus       250 ~~~pl~~~~l------d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e  291 (568)
T PTZ00420        250 TTSALVTMSI------DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ  291 (568)
T ss_pred             CCCceEEEEe------cCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence             556655421      23333343344455689999999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.6e-34  Score=231.20  Aligned_cols=203  Identities=26%  Similarity=0.414  Sum_probs=175.0

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      +...|.++.|+|    ++..+++++.|+.+++|+......                 .....+.+|...|.+++|+|++.
T Consensus       158 ~~~sv~~~~fs~----~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~  216 (456)
T KOG0266|consen  158 ECPSVTCVDFSP----DGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGS  216 (456)
T ss_pred             ccCceEEEEEcC----CCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCc
Confidence            378899999999    999999999999999999966210                 14566688999999999999998


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        ++++++.|++|++||+.  ........+.+|..                      .|++++|+|+++++++|+.|++|
T Consensus       217 --~l~s~s~D~tiriwd~~--~~~~~~~~l~gH~~----------------------~v~~~~f~p~g~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  217 --YLLSGSDDKTLRIWDLK--DDGRNLKTLKGHST----------------------YVTSVAFSPDGNLLVSGSDDGTV  270 (456)
T ss_pred             --EEEEecCCceEEEeecc--CCCeEEEEecCCCC----------------------ceEEEEecCCCCEEEEecCCCcE
Confidence              99999999999999983  23344455554332                      37999999999999999999999


Q ss_pred             EEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc--eEEEecCCccccccCcceeeeEEEEcC
Q 023643          184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK--CIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      ++||+++++++..+.+|.+.|++++|++++++|++++.|+.|+|||+.+++  +...+...     .... +++.+.|+|
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~-~~~~~~fsp  344 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA-----ENSA-PVTSVQFSP  344 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC-----CCCC-ceeEEEECC
Confidence            999999999999999999999999999999999999999999999999998  45666322     1222 699999999


Q ss_pred             CCCEEEEEcCcceEEeCC
Q 023643          262 SESWLVRVRATNYVILFS  279 (279)
Q Consensus       262 ~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.+|++++.|+.+++||
T Consensus       345 ~~~~ll~~~~d~~~~~w~  362 (456)
T KOG0266|consen  345 NGKYLLSASLDRTLKLWD  362 (456)
T ss_pred             CCcEEEEecCCCeEEEEE
Confidence            999999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=228.55  Aligned_cols=231  Identities=20%  Similarity=0.244  Sum_probs=193.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .+.+|+|+..+...   +.+.+|.+.|.++....    +|.+|++|+.|.++++|.++.....               ..
T Consensus       345 s~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~---------------~~  402 (775)
T KOG0319|consen  345 SPELRLYTLPTSYC---QIIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSK---------------SL  402 (775)
T ss_pred             CCceEEEecCCCce---EEEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcch---------------hh
Confidence            46788998777543   26889999999999555    5789999999999999988542211               34


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ++....+|++.|.+++++..+. .+|+++|.|+++++|++...........+.                ..+....|.+.
T Consensus       403 ~~a~~~gH~~svgava~~~~~a-sffvsvS~D~tlK~W~l~~s~~~~~~~~~~----------------~~~t~~aHdKd  465 (775)
T KOG0319|consen  403 CVAQANGHTNSVGAVAGSKLGA-SFFVSVSQDCTLKLWDLPKSKETAFPIVLT----------------CRYTERAHDKD  465 (775)
T ss_pred             hhhhhcccccccceeeecccCc-cEEEEecCCceEEEecCCCcccccccceeh----------------hhHHHHhhccc
Confidence            4566678999999999987665 699999999999999986522211111111                11122345567


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |+|++++|+.++++||+.|.+.++|++.+.+...++.+|...|.|+.|+|..+.++++|.|++|+||.+.+..+++++  
T Consensus       466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~--  543 (775)
T KOG0319|consen  466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF--  543 (775)
T ss_pred             ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .+|+..|..+.|-.++..|+++++||.+++|+
T Consensus       544 ------eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  544 ------EGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ------cCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence                  79999999999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.7e-34  Score=205.33  Aligned_cols=224  Identities=14%  Similarity=0.186  Sum_probs=188.1

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|..|.+|++-+.. +-...+++|.+.|..+.|.+    |++.+++++.|.+++.||+++                   +
T Consensus        67 ~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~----d~s~i~S~gtDk~v~~wD~~t-------------------G  122 (338)
T KOG0265|consen   67 SDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMR----DGSHILSCGTDKTVRGWDAET-------------------G  122 (338)
T ss_pred             CcceEEEEeccccc-cceeeeccccceeEeeeecc----CCCEEEEecCCceEEEEeccc-------------------c
Confidence            47889999965543 33456779999999999999    999999999999999999999                   7


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.++.+++|...|+++.-+.-+. .++.|++.|+++++||++.....+   .+..                       ..
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~---t~~~-----------------------ky  175 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIK---TFEN-----------------------KY  175 (338)
T ss_pred             eeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhh---cccc-----------------------ce
Confidence            88899999999999998554454 578899999999999987532211   1111                       01


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC----CceE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS----GKCI  236 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~----~~~~  236 (279)
                      +++++.|..++..+.+|+-|+.|++||++.+...+.+.+|..+|+.|..+|+|.++++-+.|.++++||++-    ..++
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence            368999999999999999999999999999999999999999999999999999999999999999999974    3456


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+..+.    .........++|+|++..+.+|+.|..+++||
T Consensus       256 ~if~g~~----hnfeknlL~cswsp~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  256 KIFQGHI----HNFEKNLLKCSWSPNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             EEeecch----hhhhhhcceeeccCCCCccccccccceEEEee
Confidence            6665432    23344567789999999999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.8e-36  Score=225.61  Aligned_cols=215  Identities=17%  Similarity=0.236  Sum_probs=182.6

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      ..+..+.+|+..|+++.|.|.   .+.+|++++.|+.|+||++...                  +++++++.+|..+|..
T Consensus       205 k~~~~~~gH~kgvsai~~fp~---~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd  263 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPK---KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRD  263 (503)
T ss_pred             hheeeccCCccccchhhhccc---eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhh
Confidence            446688999999999999995   8999999999999999999874                  7889999999999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAI  174 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  174 (279)
                      ++|++++.  .|+|+|.|+.|++||++++   ++...+....                       .++|+.|+|++ +.+
T Consensus       264 ~~~s~~g~--~fLS~sfD~~lKlwDtETG---~~~~~f~~~~-----------------------~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  264 ASFNNCGT--SFLSASFDRFLKLWDTETG---QVLSRFHLDK-----------------------VPTCVKFHPDNQNIF  315 (503)
T ss_pred             hhccccCC--eeeeeecceeeeeeccccc---eEEEEEecCC-----------------------CceeeecCCCCCcEE
Confidence            99999998  9999999999999998765   3333333322                       26899999998 788


Q ss_pred             EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC------------
Q 023643          175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV------------  242 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------  242 (279)
                      ++|+.|+.|+.||+++++.++++..|-+.|..+.|-++++++++.+.|++++||+.+.+-.+..+...            
T Consensus       316 l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P  395 (503)
T KOG0282|consen  316 LVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP  395 (503)
T ss_pred             EEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence            99999999999999999999999999999999999999999999999999999998765433322111            


Q ss_pred             --------------------------ccccccCcce--eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          243 --------------------------KDKQLKGVIS--CVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       243 --------------------------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                                                ....+.+|..  .-..+.|||||.+|++|+.||.+.+||
T Consensus       396 ~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  396 NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence                                      0124556653  346678999999999999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=199.87  Aligned_cols=216  Identities=15%  Similarity=0.183  Sum_probs=182.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |.+||+||+..+  .+++++.+|..+|..++.+.    |...+++++.|..+.+||+++                   ++
T Consensus        38 drtvrLWNp~rg--~liktYsghG~EVlD~~~s~----Dnskf~s~GgDk~v~vwDV~T-------------------Gk   92 (307)
T KOG0316|consen   38 DRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSS----DNSKFASCGGDKAVQVWDVNT-------------------GK   92 (307)
T ss_pred             CceEEeeccccc--ceeeeecCCCceeeeccccc----cccccccCCCCceEEEEEccc-------------------Ce
Confidence            779999998777  56999999999999999999    899999999999999999999                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ..+.+++|.+.|+.++|+.+..  .+++|+.|.++++||-+.. ..+.+..+....                      ..
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~-s~ePiQildea~----------------------D~  147 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSR-SFEPIQILDEAK----------------------DG  147 (307)
T ss_pred             eeeecccccceeeEEEecCcce--EEEeccccceeEEEEcccC-CCCccchhhhhc----------------------Cc
Confidence            8899999999999999999887  9999999999999997642 222222221110                      13


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |.++..+  +..+++|+.||+++.||++.|+....+.+  .+|+|+.|+++++..++++.|+++++.|-.+|+.+..+. 
T Consensus       148 V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-  222 (307)
T KOG0316|consen  148 VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-  222 (307)
T ss_pred             eeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-
Confidence            6777775  45799999999999999999988776654  579999999999999999999999999999999999984 


Q ss_pred             CccccccCcce--eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVIS--CVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             +|..  .-...++.....++++|++||.|.+||
T Consensus       223 -------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  223 -------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD  255 (307)
T ss_pred             -------ccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence                   4442  334566777788999999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=210.97  Aligned_cols=207  Identities=21%  Similarity=0.417  Sum_probs=171.8

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      .....+.+|..+|+.+-|+|    +-.++++++.|++|++||..+                   ++....+++|.+.|..
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp----~~~~v~~as~d~tikv~D~~t-------------------g~~e~~LrGHt~sv~d  155 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHP----SEALVVSASEDATIKVFDTET-------------------GELERSLRGHTDSVFD  155 (406)
T ss_pred             Cchhhhhccccceeeeeecc----CceEEEEecCCceEEEEEccc-------------------hhhhhhhhccccceeE
Confidence            34456678999999999999    888999999999999999999                   7778999999999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      ++|+..|+  +|++++.|-.+++||..+.  ..+.....++..                      .|.++.|-|.|.+++
T Consensus       156 i~~~a~Gk--~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h----------------------~vS~V~f~P~gd~il  209 (406)
T KOG0295|consen  156 ISFDASGK--YLATCSSDLSAKLWDFDTF--FRCIKSLIGHEH----------------------GVSSVFFLPLGDHIL  209 (406)
T ss_pred             EEEecCcc--EEEecCCccchhheeHHHH--HHHHHHhcCccc----------------------ceeeEEEEecCCeee
Confidence            99999998  9999999999999998642  233333333322                      278999999999999


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecC------------------------------------------CcceEEEEEcCC-
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGH------------------------------------------SDYLHCIVARNS-  212 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------------~~~i~~i~~~~~-  212 (279)
                      +++.|.+|+.|++.++.++.+|.+|                                          +.+|-|++|.|. 
T Consensus       210 S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~  289 (406)
T KOG0295|consen  210 SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES  289 (406)
T ss_pred             ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc
Confidence            9999999999999988877776444                                          445555665431 


Q ss_pred             --------------CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          213 --------------TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       213 --------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                                    +.++.+++.|++|++||+.++.++.++        .+|.++|..++|+|.|+||+++..|+++++|
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--------VGHDNWVRGVAFSPGGKYILSCADDKTLRVW  361 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--------ecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence                          137777778888888888888888877        8999999999999999999999999999999


Q ss_pred             C
Q 023643          279 S  279 (279)
Q Consensus       279 d  279 (279)
                      |
T Consensus       362 d  362 (406)
T KOG0295|consen  362 D  362 (406)
T ss_pred             E
Confidence            7

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=196.55  Aligned_cols=222  Identities=19%  Similarity=0.265  Sum_probs=178.3

Q ss_pred             CCceeeeccccc-cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAY-RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.+.|-+++.. .......+. -.+.+..++|++.   ..+.+++++.||++++||....                  .
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~~~~------------------s   94 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSEN---HENQVIAASGDGSLRLFDLTMP------------------S   94 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeee-cccceeEeeecCC---CcceEEEEecCceEEEeccCCC------------------C
Confidence            466666666422 222222332 3578999999995   7788999999999999996543                  5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .|++.++.|..+|.++.|++... ..++++|.|++|++|+..   ..+.+.++.++..                      
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r-~~~ltsSWD~TiKLW~~~---r~~Sv~Tf~gh~~----------------------  148 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRR-RIFLTSSWDGTIKLWDPN---RPNSVQTFNGHNS----------------------  148 (311)
T ss_pred             cchhHHHhhhhheEEeccccccc-eeEEeeccCCceEeecCC---CCcceEeecCCcc----------------------
Confidence            78999999999999999999766 477888999999999964   3344445555332                      


Q ss_pred             CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCC-ceEE
Q 023643          161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSG-KCIK  237 (279)
Q Consensus       161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~-~~~~  237 (279)
                      .|....|+| ..+++++++.|+.+++||++..-....+..|...+.|+.|+. +.+.+++|+.|+.|++||++.. .++.
T Consensus       149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~  228 (311)
T KOG0277|consen  149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF  228 (311)
T ss_pred             EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence            278889999 456899999999999999987554455889999999999998 6788999999999999999975 4555


Q ss_pred             EecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      .+        .+|.-.|..++|||. ...||+++.|-++++||
T Consensus       229 eL--------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~  263 (311)
T KOG0277|consen  229 EL--------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWD  263 (311)
T ss_pred             ee--------cCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence            66        799999999999996 56899999999999997

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-34  Score=230.11  Aligned_cols=220  Identities=20%  Similarity=0.288  Sum_probs=191.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|.|++||.+-.  .++..+..|.++|..++|+|    .+.++++|+.|-+|+||+..+                   .+
T Consensus        30 sG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~-------------------rr   84 (1202)
T KOG0292|consen   30 SGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKT-------------------RR   84 (1202)
T ss_pred             Cceeeeehhhhh--hHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEeccc-------------------ce
Confidence            589999997766  45888999999999999999    899999999999999999998                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ++.++.+|-+.|..+.|++.-+  .++|+|.|.+|+||+..   +..++..+.||..                      .
T Consensus        85 clftL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwq---sr~~iavltGHnH----------------------Y  137 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQ---SRKCIAVLTGHNH----------------------Y  137 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCc--eEEEccCCCeEEEEecc---CCceEEEEecCce----------------------E
Confidence            8899999999999999999998  99999999999999964   4566666666532                      2


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCC-----------------------------cEEEEeecCCcceEEEEEcCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS-----------------------------RIKMVFKGHSDYLHCIVARNS  212 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------------------------~~~~~~~~~~~~i~~i~~~~~  212 (279)
                      |.|..|+|....+++++-|.+|++||+..-                             -..+.+++|.-.|.-++|+|.
T Consensus       138 VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  138 VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT  217 (1202)
T ss_pred             EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence            789999999999999999999999998521                             123456789999999999999


Q ss_pred             CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          213 TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       213 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      -..|++|+.|+.|++|.+...+.- ...     ...+|.+.|+++-|+|...++++.|+|++|++||
T Consensus       218 lpliVSG~DDRqVKlWrmnetKaW-EvD-----tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  218 LPLIVSGADDRQVKLWRMNETKAW-EVD-----TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             cceEEecCCcceeeEEEeccccce-eeh-----hhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            999999999999999998655432 221     1279999999999999999999999999999997

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.3e-35  Score=219.26  Aligned_cols=220  Identities=19%  Similarity=0.240  Sum_probs=176.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |||.|+||++-.. ..+++++.+|..+|.+++|++    +|..+++++.|+.|++||.++                   +
T Consensus       235 mD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~----~g~~fLS~sfD~~lKlwDtET-------------------G  290 (503)
T KOG0282|consen  235 MDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNN----CGTSFLSASFDRFLKLWDTET-------------------G  290 (503)
T ss_pred             CCceEEEEEEecC-cceehhhhcchhhhhhhhccc----cCCeeeeeecceeeeeecccc-------------------c
Confidence            7999999997763 377999999999999999999    899999999999999999999                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+. -...++++.|+|++. +.|++|+.|+.|+.||++...   ....+ .++..+                    
T Consensus       291 ~~~~~f~-~~~~~~cvkf~pd~~-n~fl~G~sd~ki~~wDiRs~k---vvqeY-d~hLg~--------------------  344 (503)
T KOG0282|consen  291 QVLSRFH-LDKVPTCVKFHPDNQ-NIFLVGGSDKKIRQWDIRSGK---VVQEY-DRHLGA--------------------  344 (503)
T ss_pred             eEEEEEe-cCCCceeeecCCCCC-cEEEEecCCCcEEEEeccchH---HHHHH-Hhhhhh--------------------
Confidence            5555554 234689999999995 599999999999999998642   22222 233332                    


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcE----------------------------------------------E
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI----------------------------------------------K  194 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------------------------------------~  194 (279)
                       |..+.|-++++++++.+.|++++||+.+...+                                              .
T Consensus       345 -i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk  423 (503)
T KOG0282|consen  345 -ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK  423 (503)
T ss_pred             -eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence             46667777777777777777777776653211                                              1


Q ss_pred             EEeecCC--cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcC
Q 023643          195 MVFKGHS--DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRA  271 (279)
Q Consensus       195 ~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  271 (279)
                      ..|++|.  +.-..+.|||||.+|++|+.||.+.+||.++.+.+..+        .+|...+..+.|+|. ...+||++.
T Consensus       424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--------kah~~~ci~v~wHP~e~Skvat~~w  495 (503)
T KOG0282|consen  424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--------KAHDQPCIGVDWHPVEPSKVATCGW  495 (503)
T ss_pred             hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc--------ccCCcceEEEEecCCCcceeEeccc
Confidence            1244554  45567899999999999999999999999999999998        789999999999995 467999999


Q ss_pred             cceEEeCC
Q 023643          272 TNYVILFS  279 (279)
Q Consensus       272 d~~i~~wd  279 (279)
                      ||.|++|+
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-34  Score=221.64  Aligned_cols=218  Identities=19%  Similarity=0.253  Sum_probs=192.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |+.||||+.++.+.  ++.++.|.+-|.+++.+|    ...++++++.|-+|++||.+..                  ..
T Consensus        76 D~~IrVfnynt~ek--V~~FeAH~DyIR~iavHP----t~P~vLtsSDDm~iKlW~we~~------------------wa  131 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEK--VKTFEAHSDYIRSIAVHP----TLPYVLTSSDDMTIKLWDWENE------------------WA  131 (794)
T ss_pred             CceEEEEeccccee--eEEeeccccceeeeeecC----CCCeEEecCCccEEEEeeccCc------------------ee
Confidence            78999999999854  889999999999999999    7899999999999999999875                  77


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      +.+++.+|+..|.+++|+|... +.++|++-|++|++|.+..   .....++.+|..                      .
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~-ntFaS~sLDrTVKVWslgs---~~~nfTl~gHek----------------------G  185 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDP-NTFASASLDRTVKVWSLGS---PHPNFTLEGHEK----------------------G  185 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCc-cceeeeeccccEEEEEcCC---CCCceeeecccc----------------------C
Confidence            8899999999999999999877 6999999999999999743   344445555433                      4


Q ss_pred             ceeEEEcCCC--CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          162 NNAIAVDPQG--GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       162 i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      |+|+.+-+-|  .+|++|+.|.+|++||.++..+++++++|...|.++.|+|.-..+++||+||+++||+-.+-+....+
T Consensus       186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence            8999998744  59999999999999999999999999999999999999999999999999999999999888877777


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                              .-.-..+++++-.+.+..++.|..+|.|.+
T Consensus       266 --------n~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  266 --------NYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             --------hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence                    444568999999998888999988887754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.1e-33  Score=207.10  Aligned_cols=248  Identities=19%  Similarity=0.209  Sum_probs=184.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||++|+||.++   +......+|.++|.+++|.-... ....|++++.|.++++|..+.++..               .
T Consensus       123 YDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~---------------~  183 (423)
T KOG0313|consen  123 YDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENK---------------V  183 (423)
T ss_pred             cCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhh---------------h
Confidence            589999999998   66788999999999998865211 2336999999999999999875322               2


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..-+||...|.+++..+++.  .+++|+.|.+|+||+............-..........-.............|..
T Consensus       184 ~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  184 KALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence            33344559999999999999998  9999999999999993321110000000000000000000001111112234555


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce---EE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC---IK  237 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~  237 (279)
                      .|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...+.|+.++|..++|++|+.|..|++||.|++.-   .+
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~  339 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ  339 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence            689999998 67899999999999999999999988874 56789999999999999999999999999998642   23


Q ss_pred             EecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      .+        .+|.+.|.++.|+|.. ..|++|+.|+++++||
T Consensus       340 s~--------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  340 SL--------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             ee--------ecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence            33        7999999999999965 5678999999999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.3e-33  Score=210.74  Aligned_cols=227  Identities=16%  Similarity=0.238  Sum_probs=189.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC--C--CcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS--D--GSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--d--g~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .|.|||||.......+..+++.-.++|..++|++    ++.+|++.+.  +  |.+.+||-                   
T Consensus        80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~----ds~RI~avGEGrerfg~~F~~DS-------------------  136 (603)
T KOG0318|consen   80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF----DSKRIAAVGEGRERFGHVFLWDS-------------------  136 (603)
T ss_pred             cCcEEEEeccCcceeeeeeeeecccccccceeCC----CCcEEEEEecCccceeEEEEecC-------------------
Confidence            5899999977655445557788889999999999    8888877653  2  34555654                   


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                        +..+..+.+|...|+++.|-|..+ ..++||+.|++|.+|+   ++.-+.......| .+                  
T Consensus       137 --G~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffe---GPPFKFk~s~r~H-sk------------------  191 (603)
T KOG0318|consen  137 --GNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFE---GPPFKFKSSFREH-SK------------------  191 (603)
T ss_pred             --CCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEee---CCCeeeeeccccc-cc------------------
Confidence              445677889999999999999988 6899999999999998   3333333333322 22                  


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                         -|+|+.|+|||..+++++.||+|.+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.+
T Consensus       192 ---FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  192 ---FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS  268 (603)
T ss_pred             ---ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence               27999999999999999999999999999999999998   899999999999999999999999999999999988


Q ss_pred             eEEEecCCcc-----------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CIKVIDPVKD-----------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.++.....                                   ..+.+|...|+++..+|++.+|++|+.||.|.-||
T Consensus       269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            8887753321                                   25679999999999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.9e-32  Score=209.69  Aligned_cols=218  Identities=21%  Similarity=0.372  Sum_probs=186.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.|++|+.+..  ..+..+..|...+.++.|+|    ++.++++++.+|.|++|++.+                   .+
T Consensus        72 ~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-------------------~~  126 (289)
T cd00200          72 DKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSP----DGRILSSSSRDKTIKVWDVET-------------------GK  126 (289)
T ss_pred             CCeEEEEEcCcc--cceEEEeccCCcEEEEEEcC----CCCEEEEecCCCeEEEEECCC-------------------cE
Confidence            799999998875  33566778888999999999    788888888899999999986                   45


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ....+..|...+.+++|+|++.  ++++++.|+.|++||++....   ...+..+                      ...
T Consensus       127 ~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~---~~~~~~~----------------------~~~  179 (289)
T cd00200         127 CLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKC---VATLTGH----------------------TGE  179 (289)
T ss_pred             EEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCcEEEEEcccccc---ceeEecC----------------------ccc
Confidence            5666778999999999999976  888888899999999864321   1111111                      113


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.+++|+|++.++++++.||.|++||+.+++....+  
T Consensus       180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--  257 (289)
T cd00200         180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--  257 (289)
T ss_pred             cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc--
Confidence            789999999999999999999999999999999999889999999999999899999988999999999998888888  


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            ..|...|.+++|+|++++|++++.|+.+++|+
T Consensus       258 ------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         258 ------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                  57778899999999999999999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-32  Score=235.56  Aligned_cols=227  Identities=16%  Similarity=0.202  Sum_probs=180.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++||+++.  ..+..+.+|...|++++|+|.   ++.+|++|+.||+|++||+.+                   +
T Consensus       553 ~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~---~~~~L~Sgs~Dg~v~iWd~~~-------------------~  608 (793)
T PLN00181        553 FEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSA---DPTLLASGSDDGSVKLWSINQ-------------------G  608 (793)
T ss_pred             CCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCC---CCCEEEEEcCCCEEEEEECCC-------------------C
Confidence            4899999998876  346778899999999999973   789999999999999999987                   4


Q ss_pred             cccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ..+..+..+ ..+.++.|.+ ++.  +|++|+.||.|++||++....  ....+.+ +                     .
T Consensus       609 ~~~~~~~~~-~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~--~~~~~~~-h---------------------~  661 (793)
T PLN00181        609 VSIGTIKTK-ANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKL--PLCTMIG-H---------------------S  661 (793)
T ss_pred             cEEEEEecC-CCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCc--cceEecC-C---------------------C
Confidence            445555544 5799999965 566  999999999999999864321  1111222 1                     1


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCC------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVES------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      ..|.++.|. ++.+|++++.|+.|++||++.      ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus       662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            237889997 678999999999999999974      3578889999999999999999999999999999999998776


Q ss_pred             ceEEEecCCc-----cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          234 KCIKVIDPVK-----DKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 ~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+..+....     ......+...|.+++|+|++..|++|+.||.|++|+
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            5544332111     011234567899999999999999999999999996

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.8e-32  Score=218.19  Aligned_cols=212  Identities=17%  Similarity=0.167  Sum_probs=164.4

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      .+.+|.+.|.+++|+|.   ++++|++|+.|++|++||+.+......            ...++..+.+|...|.+++|+
T Consensus        70 ~l~GH~~~V~~v~fsP~---d~~~LaSgS~DgtIkIWdi~~~~~~~~------------~~~~l~~L~gH~~~V~~l~f~  134 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPF---DPQKLFTASEDGTIMGWGIPEEGLTQN------------ISDPIVHLQGHTKKVGIVSFH  134 (493)
T ss_pred             eEeCCCCCEEEEEEcCC---CCCEEEEEeCCCEEEEEecCCCccccc------------cCcceEEecCCCCcEEEEEeC
Confidence            46789999999999993   678999999999999999976321100            024566788999999999999


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      |.+. ++|++++.|++|+|||+++.   .....+.++                      ...|.+++|+|++.+|++++.
T Consensus       135 P~~~-~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h----------------------~~~V~sla~spdG~lLatgs~  188 (493)
T PTZ00421        135 PSAM-NVLASAGADMVVNVWDVERG---KAVEVIKCH----------------------SDQITSLEWNLDGSLLCTTSK  188 (493)
T ss_pred             cCCC-CEEEEEeCCCEEEEEECCCC---eEEEEEcCC----------------------CCceEEEEEECCCCEEEEecC
Confidence            9863 38999999999999998653   222222221                      113799999999999999999


Q ss_pred             CCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEec----CCCeEEEEeCCCCc-eEEEecCCccccccCccee
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGS----EDGTARIWDCKSGK-CIKVIDPVKDKQLKGVISC  253 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~----~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~  253 (279)
                      |+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++.. +.....       ..+...
T Consensus       189 Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-------~d~~~~  261 (493)
T PTZ00421        189 DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-------LDQSSA  261 (493)
T ss_pred             CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-------cCCCCc
Confidence            999999999999999999988765 44677888877777654    58999999998754 333331       122345


Q ss_pred             eeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          254 VSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       254 v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      +....|++++.+|++|+ .|+.|++||
T Consensus       262 ~~~~~~d~d~~~L~lggkgDg~Iriwd  288 (493)
T PTZ00421        262 LFIPFFDEDTNLLYIGSKGEGNIRCFE  288 (493)
T ss_pred             eEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence            66678999999999887 599999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-34  Score=198.02  Aligned_cols=216  Identities=18%  Similarity=0.250  Sum_probs=182.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|=+.++||.-++.  .+..+. |..-|.+++|+.    |.++|++|+.+..+||||++..                  .
T Consensus        79 adftakvw~a~tgd--elhsf~-hkhivk~~af~~----ds~~lltgg~ekllrvfdln~p------------------~  133 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGD--ELHSFE-HKHIVKAVAFSQ----DSNYLLTGGQEKLLRVFDLNRP------------------K  133 (334)
T ss_pred             ccchhhhhhhhhhh--hhhhhh-hhheeeeEEecc----cchhhhccchHHHhhhhhccCC------------------C
Confidence            35577899966653  366665 888999999999    9999999999999999999975                  4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .+...+.+|.+.|..+.|+...+  .|+++..|++||+||.++....+   .+.-.+                       
T Consensus       134 App~E~~ghtg~Ir~v~wc~eD~--~iLSSadd~tVRLWD~rTgt~v~---sL~~~s-----------------------  185 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHEDK--CILSSADDKTVRLWDHRTGTEVQ---SLEFNS-----------------------  185 (334)
T ss_pred             CCchhhcCCCCcceeEEEeccCc--eEEeeccCCceEEEEeccCcEEE---EEecCC-----------------------
Confidence            56678889999999999999887  89999999999999987653222   221111                       


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|+++.++++|.+|.++. .+.|.+||..+..++..++ -...|.+..++|+...+++|+.|..++.||..+++.+..+.
T Consensus       186 ~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n  263 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN  263 (334)
T ss_pred             CCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence            278999999998776655 5789999999998888877 44568889999999999999999999999999999888753


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                             ++|.++|.|+.|+|+|...++||+||+|++|
T Consensus       264 -------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  264 -------KGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             -------cCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence                   7999999999999999999999999999999

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.6e-33  Score=198.64  Aligned_cols=205  Identities=18%  Similarity=0.322  Sum_probs=175.3

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV   96 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   96 (279)
                      .+..+.+|.++|+.+.|+|    ++.+||+|+.|..|.+|++...                  .+-...+++|.+.|..+
T Consensus        39 p~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~I~LWnv~gd------------------ceN~~~lkgHsgAVM~l   96 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRAIVLWNVYGD------------------CENFWVLKGHSGAVMEL   96 (338)
T ss_pred             hhhhcCCCcceEEEEEECC----CCCeEeecCCcceEEEEecccc------------------ccceeeeccccceeEee
Confidence            3456789999999999999    9999999999999999997653                  34456677999999999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIF  175 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  175 (279)
                      .|.+++.  .+++++.|.+++.||.+++   +.....+++..                      -++++.-+.-| .++.
T Consensus        97 ~~~~d~s--~i~S~gtDk~v~~wD~~tG---~~~rk~k~h~~----------------------~vNs~~p~rrg~~lv~  149 (338)
T KOG0265|consen   97 HGMRDGS--HILSCGTDKTVRGWDAETG---KRIRKHKGHTS----------------------FVNSLDPSRRGPQLVC  149 (338)
T ss_pred             eeccCCC--EEEEecCCceEEEEecccc---eeeehhccccc----------------------eeeecCccccCCeEEE
Confidence            9999998  9999999999999998654   44444444321                      14555533223 3677


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      +++.|+++++||+++.+.+.++. ....++++.|..++..+.+|+-|+.|++||++.+...+.+        .+|..+|+
T Consensus       150 SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l--------sGh~DtIt  220 (338)
T KOG0265|consen  150 SGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL--------SGHADTIT  220 (338)
T ss_pred             ecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEe--------ecccCcee
Confidence            89999999999999999888886 4567999999999999999999999999999999999999        89999999


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..+|+|.++.+-+.|.++++||
T Consensus       221 ~lsls~~gs~llsnsMd~tvrvwd  244 (338)
T KOG0265|consen  221 GLSLSRYGSFLLSNSMDNTVRVWD  244 (338)
T ss_pred             eEEeccCCCccccccccceEEEEE
Confidence            999999999999999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.8e-32  Score=234.53  Aligned_cols=219  Identities=14%  Similarity=0.257  Sum_probs=176.5

Q ss_pred             CCCceeeeccccccc------cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643            1 MCGDSTNWDEDAYRK------SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV   74 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   74 (279)
                      .||.|+||+.+....      ....... +...|.+++|+|.   ++.+||+++.||+|++||+.+              
T Consensus       503 ~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~---~~~~las~~~Dg~v~lWd~~~--------------  564 (793)
T PLN00181        503 VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY---IKSQVASSNFEGVVQVWDVAR--------------  564 (793)
T ss_pred             CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC---CCCEEEEEeCCCeEEEEECCC--------------
Confidence            489999999753210      0112222 3468999999983   678999999999999999987              


Q ss_pred             ceeeeccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           75 QQLLGIEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        75 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                           .+.+..+.+|.+.|++++|+| ++.  +|++|+.|++|++||++...   ....+..+                 
T Consensus       565 -----~~~~~~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~---~~~~~~~~-----------------  617 (793)
T PLN00181        565 -----SQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGV---SIGTIKTK-----------------  617 (793)
T ss_pred             -----CeEEEEecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCc---EEEEEecC-----------------
Confidence                 566677889999999999997 566  99999999999999986432   11121111                 


Q ss_pred             ccCCCCCCceeEEEc-CCCCeEEEecCCCeEEEEecCCCc-EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          154 GALSPVPENNAIAVD-PQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                            ..+.++.|+ +++.+|++|+.|+.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|++|++||++
T Consensus       618 ------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        618 ------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             ------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence                  026788995 578899999999999999998765 567788999999999996 67899999999999999997


Q ss_pred             CC------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 SG------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+      +++..+        .+|...+..++|+|++.+|++|+.|+.|++|+
T Consensus       691 ~~~~~~~~~~l~~~--------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        691 MSISGINETPLHSF--------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCccccCCcceEEE--------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            53      455555        68888999999999999999999999999996

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-33  Score=191.71  Aligned_cols=229  Identities=18%  Similarity=0.242  Sum_probs=182.2

Q ss_pred             CCCceeeeccccccc-cceeeeeecccceEEEEE-CCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRK-SILKEREILTRTVFRTVW-GPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||+|||+...+... ..+.++.+|.++|+.++| +|.   -|.+||+++.||.|.||.-..+.                
T Consensus        31 SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---~G~iLAScsYDgkVIiWke~~g~----------------   91 (299)
T KOG1332|consen   31 SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---FGTILASCSYDGKVIIWKEENGR----------------   91 (299)
T ss_pred             CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---cCcEeeEeecCceEEEEecCCCc----------------
Confidence            389999999776654 678899999999999999 563   79999999999999999988742                


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       .........|...|++++|.|.+-+..|+.++.||.|.|.+.+............                      .|
T Consensus        92 -w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~----------------------aH  148 (299)
T KOG1332|consen   92 -WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF----------------------AH  148 (299)
T ss_pred             -hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh----------------------cc
Confidence             4555667789999999999998877799999999999999987531111111111                      22


Q ss_pred             CCCceeEEEcCC---C-----------CeEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcCC----CcEEEE
Q 023643          159 VPENNAIAVDPQ---G-----------GAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNS----TNQIVT  218 (279)
Q Consensus       159 ~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~----~~~l~~  218 (279)
                      ...|++++|.|.   |           +.|++|+.|..|+||+..++  +..+.|.+|.+.|+.++|.|.    ..+|++
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence            224788999885   3           46999999999999999875  344568999999999999995    357999


Q ss_pred             ecCCCeEEEEeCCCC--ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          219 GSEDGTARIWDCKSG--KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       219 ~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +|.||++.||-.+..  ....++       +......+..+.|++.|+.|+.++.|+.|.+|
T Consensus       229 ~SqDg~viIwt~~~e~e~wk~tl-------l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  229 CSQDGTVIIWTKDEEYEPWKKTL-------LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             ecCCCcEEEEEecCccCcccccc-------cccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            999999999986532  111122       13455679999999999999999999999998

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2e-32  Score=192.06  Aligned_cols=233  Identities=16%  Similarity=0.194  Sum_probs=187.5

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      .+.+|..+++.+.|+.    +|++|++++.|.+..||-...                   ++.+.++.+|++.|+++...
T Consensus         5 ~l~GHERplTqiKyN~----eGDLlFscaKD~~~~vw~s~n-------------------GerlGty~GHtGavW~~Did   61 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR----EGDLLFSCAKDSTPTVWYSLN-------------------GERLGTYDGHTGAVWCCDID   61 (327)
T ss_pred             ccccCccccceEEecC----CCcEEEEecCCCCceEEEecC-------------------CceeeeecCCCceEEEEEec
Confidence            3568999999999999    999999999999999998866                   78889999999999999999


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcce----------eeeccC-------------cccceEEeecCC----CCC-
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVP----------INLQGN-------------HVKPVLDLVNHQ----HKG-  151 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~----~~~-  151 (279)
                      -+.+  .++||+.|.++++||+++++.....          ....++             ....++++....    ... 
T Consensus        62 ~~s~--~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep  139 (327)
T KOG0643|consen   62 WDSK--HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP  139 (327)
T ss_pred             CCcc--eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence            8887  9999999999999999875321100          000010             000122222111    111 


Q ss_pred             ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      ......+...++.+.|.|-++.|++|..||.|.+||++++ +.+..-+.|...|+.|+++|+..+++++|.|.+-++||.
T Consensus       140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence            2233556678999999999999999999999999999997 556666789999999999999999999999999999999


Q ss_pred             CCCceEEEecCCcc-----------------------------------------------ccccCcceeeeEEEEcCCC
Q 023643          231 KSGKCIKVIDPVKD-----------------------------------------------KQLKGVISCVSCITLDASE  263 (279)
Q Consensus       231 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~v~~~~~~~~~  263 (279)
                      ++.+.++++.....                                               ..+++|-++|++++|+|+|
T Consensus       220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence            99887777652211                                               2567999999999999999


Q ss_pred             CEEEEEcCcceEEe
Q 023643          264 SWLVRVRATNYVIL  277 (279)
Q Consensus       264 ~~l~~~~~d~~i~~  277 (279)
                      +..++|++||.|++
T Consensus       300 ksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRL  313 (327)
T ss_pred             cccccCCCCceEEE
Confidence            99999999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.3e-32  Score=197.85  Aligned_cols=242  Identities=19%  Similarity=0.237  Sum_probs=186.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |+|.|+||...++..  ...+...-+.+.=+.|+|    .+..|++|+.||.+.+|.+..                   .
T Consensus       126 msG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp----~a~illAG~~DGsvWmw~ip~-------------------~  180 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHP----RAHILLAGSTDGSVWMWQIPS-------------------Q  180 (399)
T ss_pred             CCccEEEEEcccCce--EEEeecccCceEEEEecc----cccEEEeecCCCcEEEEECCC-------------------c
Confidence            789999999887643  333434567788899999    899999999999999999997                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCccee------------------eeccCcccceE
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI------------------NLQGNHVKPVL  142 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------------------~~~~~~~~~~~  142 (279)
                      ...+.+.+|..++++=.|.|+|+  .++++..||+|++|++.+........                  .+.++...++.
T Consensus       181 ~~~kv~~Gh~~~ct~G~f~pdGK--r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  181 ALCKVMSGHNSPCTCGEFIPDGK--RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             ceeeEecCCCCCcccccccCCCc--eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence            56678899999999999999998  99999999999999987653211111                  01111111111


Q ss_pred             Eee--------cCCCCCccccCCCCCCcee---EEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC
Q 023643          143 DLV--------NHQHKGPWGALSPVPENNA---IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN  211 (279)
Q Consensus       143 ~~~--------~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  211 (279)
                      -..        ......+.........+.|   +.++..-++.|+|+-||+|.|||+...++.+.+. |..+|..+.|-+
T Consensus       259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~  337 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN  337 (399)
T ss_pred             EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC
Confidence            000        0000111111222233344   4455566688999999999999999888777776 888999999998


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       212 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       ..+|++++.+|.|+.||.|+|+++.++        .+|...|.+++++|+.++++|+|.|++.+||+
T Consensus       338 -t~~l~t~c~~g~v~~wDaRtG~l~~~y--------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  338 -TDYLLTACANGKVRQWDARTGQLKFTY--------TGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             -cchheeeccCceEEeeeccccceEEEE--------ecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence             789999999999999999999999999        89999999999999999999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-32  Score=202.82  Aligned_cols=241  Identities=16%  Similarity=0.223  Sum_probs=185.7

Q ss_pred             CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |-+.-+|.+.. ...++.+++.+|..+|..+.|||    |.++|++++.|..+.+||+.+                   +
T Consensus       245 D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~t-------------------g  301 (519)
T KOG0293|consen  245 DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDT-------------------G  301 (519)
T ss_pred             CceEEEEEEecCcceeeeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCc-------------------c
Confidence            45667787432 22466789999999999999999    899999999999999999999                   4


Q ss_pred             ccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee------------cC
Q 023643           81 EPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV------------NH  147 (279)
Q Consensus        81 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  147 (279)
                      +....+. +|...+.+.+|.|++.  .+++|+.|+++..||++....    ....+.....++++.            ..
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlDgn~~----~~W~gvr~~~v~dlait~Dgk~vl~v~~d  375 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLDGNIL----GNWEGVRDPKVHDLAITYDGKYVLLVTVD  375 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCc--eeEecCCCCcEEEecCCcchh----hcccccccceeEEEEEcCCCcEEEEEecc
Confidence            4444443 3567899999999998  999999999999999864221    111111112222221            11


Q ss_pred             CCC--------CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc--eEEEEEcC-CCcEE
Q 023643          148 QHK--------GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY--LHCIVARN-STNQI  216 (279)
Q Consensus       148 ~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~-~~~~l  216 (279)
                      ...        ..........+|+++..+.+++++++.-.+..|++||+...+.++.+.+|...  +-.-+|-. +..++
T Consensus       376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi  455 (519)
T KOG0293|consen  376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI  455 (519)
T ss_pred             cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence            111        11112334457899999999999999989999999999999999999998754  33335544 45899


Q ss_pred             EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      ++||+|+.|+||+..+|+++.++        .+|...|++++|+|. -..+|+||.||+|++|-
T Consensus       456 aSGSED~kvyIWhr~sgkll~~L--------sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  456 ASGSEDSKVYIWHRISGKLLAVL--------SGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             EecCCCceEEEEEccCCceeEee--------cCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            99999999999999999999999        799999999999995 46789999999999993

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-31  Score=204.53  Aligned_cols=218  Identities=21%  Similarity=0.343  Sum_probs=185.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.+++|+.+...  .......|...+..+.|+|    ++++|++++.||.|++|++.+                   .+
T Consensus        30 ~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i~i~~~~~-------------------~~   84 (289)
T cd00200          30 DGTIKVWDLETGE--LLRTLKGHTGPVRDVAASA----DGTYLASGSSDKTIRLWDLET-------------------GE   84 (289)
T ss_pred             CcEEEEEEeeCCC--cEEEEecCCcceeEEEECC----CCCEEEEEcCCCeEEEEEcCc-------------------cc
Confidence            7899999988764  4566778889999999999    889999999999999999997                   45


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ....+..|...+.++.|+|++.  ++++++.|+.|++||+++.   .....+..+                      ...
T Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~~~~~~----------------------~~~  137 (289)
T cd00200          85 CVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETG---KCLTTLRGH----------------------TDW  137 (289)
T ss_pred             ceEEEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCc---EEEEEeccC----------------------CCc
Confidence            5666778888999999999976  8888888999999998632   111111111                      113


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +.++.|+|++.++++++.++.|++||+++++.+..+..|...+.+++|+|+++.+++++.|+.|++||++.++.+..+  
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--  215 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--  215 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch--
Confidence            789999999888888888999999999999999999999999999999999999999999999999999998888777  


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            ..|...+.+++|+|++.++++++.||.+++||
T Consensus       216 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~  247 (289)
T cd00200         216 ------RGHENGVNSVAFSPDGYLLASGSEDGTIRVWD  247 (289)
T ss_pred             ------hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence                  56777999999999999999988899999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-32  Score=213.07  Aligned_cols=218  Identities=15%  Similarity=0.299  Sum_probs=189.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC-CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD-GSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|...+|++-..  .+++.+.....+|..++|+.    .|+.||.|+.. |++-||+.++                   .
T Consensus       286 sG~f~LyelP~f--~lih~LSis~~~I~t~~~N~----tGDWiA~g~~klgQLlVweWqs-------------------E  340 (893)
T KOG0291|consen  286 SGEFGLYELPDF--NLIHSLSISDQKILTVSFNS----TGDWIAFGCSKLGQLLVWEWQS-------------------E  340 (893)
T ss_pred             CCeeEEEecCCc--eEEEEeecccceeeEEEecc----cCCEEEEcCCccceEEEEEeec-------------------c
Confidence            466677776655  44777777778999999999    89999998765 8999999998                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ..+...++|...+++++++|+|+  +++||+.||.|+|||..   ...+..++..+..                      
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq--~iaTG~eDgKVKvWn~~---SgfC~vTFteHts----------------------  393 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQ--LIATGAEDGKVKVWNTQ---SGFCFVTFTEHTS----------------------  393 (893)
T ss_pred             ceeeeccccccceeeEEECCCCc--EEEeccCCCcEEEEecc---CceEEEEeccCCC----------------------
Confidence            56677789999999999999998  99999999999999964   4456666655432                      


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKV  238 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~  238 (279)
                      .|+.+.|+..++.+++.+.||+|+.||+...+..++|.... -...|++..|.|..+++|+.|.. |.||++++|+.+..
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            37999999999999999999999999999999999998543 45678999999999999998875 99999999999999


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +        .+|.++|.+++|+|++..|++||.|.+|++||
T Consensus       474 L--------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  474 L--------SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             h--------cCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            9        89999999999999999999999999999996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=9.7e-33  Score=204.20  Aligned_cols=247  Identities=16%  Similarity=0.222  Sum_probs=198.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|..|++|+..+.......++.+..++|+++.|.+    ++..+++++.|+.+++|+++.                   .
T Consensus       195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~----~~~~~iAas~d~~~r~Wnvd~-------------------~  251 (459)
T KOG0288|consen  195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS----DNKHVIAASNDKNLRLWNVDS-------------------L  251 (459)
T ss_pred             hhhhhhhhhcccchhhhhhhhhccCCCcceeeecC----CCceEEeecCCCceeeeeccc-------------------h
Confidence            47789999988887777888998899999999999    899999999999999999998                   7


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee--------------eccCcccceEEeec
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN--------------LQGNHVKPVLDLVN  146 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  146 (279)
                      +...++.+|++.|+++.|.....  .+++|+.|.+|++||+......+.+..              +.+|..+. ..+..
T Consensus       252 r~~~TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk-vRfwD  328 (459)
T KOG0288|consen  252 RLRHTLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK-VRFWD  328 (459)
T ss_pred             hhhhhhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc-eEEEe
Confidence            88999999999999999998876  699999999999999976433222221              11221111 11111


Q ss_pred             CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC----CcceEEEEEcCCCcEEEEecCC
Q 023643          147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH----SDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      .............+.|+++..++++..+.+.+.|.++.+.|+++.+....+...    ....+.+.|||++.|+++||.|
T Consensus       329 ~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  329 IRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             ccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence            111112222333457999999999999999999999999999999888877532    2347889999999999999999


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |.|+||++.++++...+...      .....|++++|+|.|..|++++.++.+.+|-
T Consensus       409 gsv~iW~v~tgKlE~~l~~s------~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  409 GSVYIWSVFTGKLEKVLSLS------TSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CcEEEEEccCceEEEEeccC------CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999998642      2223799999999999999999999999993

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-31  Score=209.19  Aligned_cols=223  Identities=20%  Similarity=0.328  Sum_probs=186.9

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      .|.+|+........+..+  +...|+++.|++    +|.+||+|..+|.|.|||..+                   .+.+
T Consensus       198 ~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~-------------------~k~~  252 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSF--GEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKE-------------------QKKT  252 (484)
T ss_pred             eEEEEecCCCceEEeEec--CCCceEEEEECC----CCCEEEEeecCCeEEEEehhh-------------------cccc
Confidence            689999877754334333  378999999999    999999999999999999998                   5667


Q ss_pred             ccccC-CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           84 GFLHG-HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        84 ~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      ..+.+ |...|-+++|...    .+.+|+.|+.|..+|++.......  .+.++.                      ..|
T Consensus       253 ~~~~~~h~~rvg~laW~~~----~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~----------------------qeV  304 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNSS----VLSSGSRDGKILNHDVRISQHVVS--TLQGHR----------------------QEV  304 (484)
T ss_pred             ccccCCcCceeEEEeccCc----eEEEecCCCcEEEEEEecchhhhh--hhhccc----------------------cee
Confidence            77887 9999999999833    899999999999999875432222  122222                      237


Q ss_pred             eeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEec--CCCeEEEEeCCCCceEEEe
Q 023643          163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGS--EDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~d~~i~vwd~~~~~~~~~~  239 (279)
                      -.++|++++.++++|+.|+.+.|||....+++..+..|.+.|.+++|+| ....||+|+  .|+.|++||..+++.+..+
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            8999999999999999999999999988999999999999999999999 578888875  6999999999988777665


Q ss_pred             cCCcc-----------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKD-----------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ....+                                   ..+.+|...|..++++|||..+++|+.|.++++|+
T Consensus       385 dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  385 DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            42211                                   25679999999999999999999999999999995

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-32  Score=196.84  Aligned_cols=222  Identities=16%  Similarity=0.239  Sum_probs=177.8

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-ccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-PLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      .+..|.+++.+.+|+|    ||.++|+|+.|..|+|.|++..-... ..+........  ..-.++++-.|.++|+++.|
T Consensus       107 ylt~HK~~cR~aafs~----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa--~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSP----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQA--RHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             EEeecccceeeeeeCC----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCccc--CCceEeehhhccCcccceee
Confidence            4567999999999999    99999999999999999998532111 11111111000  02345778889999999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      +|...  .|++++.|++|++||+......+....++.                       ...|.+++|+|.|.+|++|.
T Consensus       181 HPre~--ILiS~srD~tvKlFDfsK~saKrA~K~~qd-----------------------~~~vrsiSfHPsGefllvgT  235 (430)
T KOG0640|consen  181 HPRET--ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-----------------------TEPVRSISFHPSGEFLLVGT  235 (430)
T ss_pred             cchhh--eEEeccCCCeEEEEecccHHHHHHHHHhhc-----------------------cceeeeEeecCCCceEEEec
Confidence            99998  999999999999999864321111111111                       11379999999999999999


Q ss_pred             CCCeEEEEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc-eee
Q 023643          179 GDSCAYCWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI-SCV  254 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v  254 (279)
                      .-..+++||+.+.++...-   ..|.+.|+++.+++.+++.+++|.||.|++||--+++++.++.       .+|. ..|
T Consensus       236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------~AH~gsev  308 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-------NAHGGSEV  308 (430)
T ss_pred             CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-------hhcCCcee
Confidence            9999999999998776544   3588999999999999999999999999999999999999986       4564 578


Q ss_pred             eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          255 SCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..|..+++|+++.+.|..+++|.
T Consensus       309 cSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  309 CSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             eeEEEccCCeEEeecCCcceeeeee
Confidence            9999999999999999999999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-33  Score=204.19  Aligned_cols=219  Identities=20%  Similarity=0.307  Sum_probs=178.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |.+|++||.+++  ++++++-+|.+.|..+.|+.      .++++++.|.+|.+||+.....                ..
T Consensus       256 DsTvrvWDv~tg--e~l~tlihHceaVLhlrf~n------g~mvtcSkDrsiaVWdm~sps~----------------it  311 (499)
T KOG0281|consen  256 DSTVRVWDVNTG--EPLNTLIHHCEAVLHLRFSN------GYMVTCSKDRSIAVWDMASPTD----------------IT  311 (499)
T ss_pred             CceEEEEeccCC--chhhHHhhhcceeEEEEEeC------CEEEEecCCceeEEEeccCchH----------------HH
Confidence            789999999998  45889999999999999987      7999999999999999987421                34


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ..+.+.||...|+.+.|...    ++++++.|.+|++|++.+   ...+..+.++..                      .
T Consensus       312 ~rrVLvGHrAaVNvVdfd~k----yIVsASgDRTikvW~~st---~efvRtl~gHkR----------------------G  362 (499)
T KOG0281|consen  312 LRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWSTST---CEFVRTLNGHKR----------------------G  362 (499)
T ss_pred             HHHHHhhhhhheeeeccccc----eEEEecCCceEEEEeccc---eeeehhhhcccc----------------------c
Confidence            56778899999999999743    999999999999999764   355555555432                      2


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |-|+.+  .++++++|+.|.+|++||+..|.+++.+++|+.-|+|+.|.  .+.+++|..||+|+|||+..+........
T Consensus       363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~  438 (499)
T KOG0281|consen  363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPAS  438 (499)
T ss_pred             ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccccc
Confidence            455555  57899999999999999999999999999999999999995  78999999999999999987543211100


Q ss_pred             C-ccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 V-KDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      . ....+..|.+.|..+.|+  ...+++++-|.+|.+||
T Consensus       439 ~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  439 TLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             chHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            0 011226788899999985  57799999999999997

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-32  Score=199.08  Aligned_cols=237  Identities=16%  Similarity=0.216  Sum_probs=186.1

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc---------------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL---------------   65 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------   65 (279)
                      +||.|++||+...  .++..+..|.+.|..|++..      ..+++++.|.+|+.|.++......               
T Consensus        87 ~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~  158 (433)
T KOG0268|consen   87 CDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRK  158 (433)
T ss_pred             cCceEEEEehhhh--hhhheeecccCceeeEEecc------cceEEecCCcceeeeeccCCcceeeeccccccccccccc
Confidence            5999999998876  55888999999999999976      678899999999999976421110               


Q ss_pred             -ccccCCcccceeee---ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccce
Q 023643           66 -PLGLSNSKVQQLLG---IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV  141 (279)
Q Consensus        66 -~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  141 (279)
                       ......+..-.++.   ..|+..+..-...|.++.|+|... ..|++|+.|++|.+||++.......+..-.       
T Consensus       159 ~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m-------  230 (433)
T KOG0268|consen  159 NSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM-------  230 (433)
T ss_pred             cccccccCceeeecccccCCccceeecCCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec-------
Confidence             00001111111221   446667776677899999999877 588999999999999998653322222111       


Q ss_pred             EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643          142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  220 (279)
                                         ..+.|+|+|..-.+++|..|..++.||++. .+++..+++|.+.|.+++|+|.|+.+++||
T Consensus       231 -------------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  231 -------------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             -------------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence                               137899999777888999999999999987 468888999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .|.+|+||..+.+.....+.       ...-..|.++.|+.|.+++++||.|+.|++|-
T Consensus       292 yDksIRIf~~~~~~SRdiYh-------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  292 YDKSIRIFPVNHGHSRDIYH-------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             ccceEEEeecCCCcchhhhh-------HhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999887766653       22335699999999999999999999999993

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-32  Score=215.38  Aligned_cols=226  Identities=14%  Similarity=0.169  Sum_probs=170.8

Q ss_pred             eeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc--------------------ccccCC------
Q 023643           19 KERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL--------------------PLGLSN------   71 (279)
Q Consensus        19 ~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------~~~~~~------   71 (279)
                      +.+. .|.+.|+++.|++    ||+|||+|+.||.|+||.+...+...                    +.....      
T Consensus       260 Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            3455 8999999999999    99999999999999999987621110                    000000      


Q ss_pred             --------cc-------cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC
Q 023643           72 --------SK-------VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN  136 (279)
Q Consensus        72 --------~~-------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  136 (279)
                              ..       ..-.+..+|++.+.||.+.|..|.|+.++   +|++++.|.+||+|++...   .+...+   
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~---~CL~~F---  406 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRK---ECLKVF---  406 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCc---ceeeEE---
Confidence                    00       00111268889999999999999999886   8999999999999997543   222222   


Q ss_pred             cccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643          137 HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  215 (279)
                                          .|...|+|++|+| |.+++++|+-|+.|+||++...+.+.-.. -..-|++++|.|+|++
T Consensus       407 --------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~  465 (712)
T KOG0283|consen  407 --------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKG  465 (712)
T ss_pred             --------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCce
Confidence                                2222489999999 77899999999999999998776666444 3478999999999999


Q ss_pred             EEEecCCCeEEEEeCCCCceEEEecCCcccc-ccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          216 IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ-LKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       216 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      .+.|+.+|.+++|+....+............ -..|. .|+++.|.|.. ..+++.+.|..|+|||
T Consensus       466 avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d  530 (712)
T KOG0283|consen  466 AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYD  530 (712)
T ss_pred             EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEe
Confidence            9999999999999998887776654322111 11233 89999999743 3577778999999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-31  Score=201.03  Aligned_cols=216  Identities=18%  Similarity=0.294  Sum_probs=181.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|.|+|+|.++.  .++..+..|+.+|..+.|+|.   ++..|++|+.|+.+++||+.+.                   .
T Consensus        89 sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~---d~t~l~s~sDd~v~k~~d~s~a-------------------~  144 (487)
T KOG0310|consen   89 SGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQ---DNTMLVSGSDDKVVKYWDLSTA-------------------Y  144 (487)
T ss_pred             cCcEEEeccccH--HHHHHHhhccCceeEEEeccc---CCeEEEecCCCceEEEEEcCCc-------------------E
Confidence            589999996653  568889999999999999995   8888999999999999999983                   3


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ....+.+|++.|.+.+|+|... ++++|||.||.|++||++...  ..+..+.  +.                     .+
T Consensus       145 v~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~--~~v~eln--hg---------------------~p  198 (487)
T KOG0310|consen  145 VQAELSGHTDYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLT--SRVVELN--HG---------------------CP  198 (487)
T ss_pred             EEEEecCCcceeEeeccccCCC-eEEEecCCCceEEEEEeccCC--ceeEEec--CC---------------------Cc
Confidence            4567889999999999999876 689999999999999987532  2222222  21                     13


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      |..+.+-|.|..+++++. ..+++||+.+| +.+..+..|...|+|+++..++..|++|+.|+.+++||+.+-+.+..+ 
T Consensus       199 Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-  276 (487)
T KOG0310|consen  199 VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-  276 (487)
T ss_pred             eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-
Confidence            788999999999998874 67999999965 555555569999999999999999999999999999998888888887 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                              ...++|.+++.+|+++.++.|..+|.+.+
T Consensus       277 --------~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  277 --------KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             --------ecccceeeEEecCCCceEEEecccceeee
Confidence                    45578999999999999999999998754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.6e-31  Score=184.15  Aligned_cols=238  Identities=16%  Similarity=0.131  Sum_probs=188.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|+++++|+++..+...-....+|.+.|-.++|+|.   .+++|++++.|.+|++||++.                   .
T Consensus        40 ~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~---~~d~~atas~dk~ir~wd~r~-------------------~   97 (313)
T KOG1407|consen   40 FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK---HPDLFATASGDKTIRIWDIRS-------------------G   97 (313)
T ss_pred             cCCceEEEEecchhhhhhhcccCCCcchhhheeCCC---CCcceEEecCCceEEEEEecc-------------------C
Confidence            378999999888765445567889999999999995   899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCccee------ee----------ccCcccceEEe
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI------NL----------QGNHVKPVLDL  144 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------~~----------~~~~~~~~~~~  144 (279)
                      ++........+.+ -+.|+|+++  +++.++.|..|...|.++.+......      ..          .......+.-+
T Consensus        98 k~~~~i~~~~eni-~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL  174 (313)
T KOG1407|consen   98 KCTARIETKGENI-NITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL  174 (313)
T ss_pred             cEEEEeeccCcce-EEEEcCCCC--EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence            6666655444444 578999998  99999999999999987643211100      00          00111112222


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  224 (279)
                      ..+.-........|.....||.|+|+|++|++|+.|..+.+||++..-+++.+..+.-+|+.+.|+-+|++||++|+|..
T Consensus       175 sypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~  254 (313)
T KOG1407|consen  175 SYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF  254 (313)
T ss_pred             eccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce
Confidence            22223333344556667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      |-|=++++|..+..+         .+.++...++|+|...+||-+..|
T Consensus       255 IDIA~vetGd~~~eI---------~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  255 IDIAEVETGDRVWEI---------PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EEeEecccCCeEEEe---------eccCCceeEEecCCCceeeEEecC
Confidence            999999999999998         456788999999999999877654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.4e-31  Score=198.09  Aligned_cols=220  Identities=21%  Similarity=0.268  Sum_probs=187.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |..+.++|....  ..+..+++|...|+.+.|+|    +...+++++.|-.|+||....                   ..
T Consensus       240 d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws~~~-------------------~s  294 (506)
T KOG0289|consen  240 DKTAVLFDKPSN--QILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWSVPL-------------------SS  294 (506)
T ss_pred             CCceEEEecchh--hhhhhccCcceEEEEEEecc----chhheeecCCcceEEeecccc-------------------cc
Confidence            456778886666  45889999999999999999    899999999999999999987                   44


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .....+.|+++|+.+..+|.+.  ||++++.|++..+.|++++..   ....... ...+                   .
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~---lt~vs~~-~s~v-------------------~  349 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQ---LTVVSDE-TSDV-------------------E  349 (506)
T ss_pred             CccccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcE---EEEEeec-cccc-------------------e
Confidence            5566778999999999999998  999999999999999875422   1111111 1111                   2


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +++.+|+|||..|.+|..|+.++|||+.++..+..|.+|.++|..++|+.+|.+|++++.|+.|++||+|..+..+++..
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999988888854


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .       ....+.++.|++.|.+|+.++.|=.|+++
T Consensus       430 ~-------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  430 D-------EKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             c-------ccccceeEEEcCCCCeEEeecceeEEEEE
Confidence            2       22378999999999999999888777764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-32  Score=209.57  Aligned_cols=231  Identities=18%  Similarity=0.226  Sum_probs=191.8

Q ss_pred             CCceeeeccccccc----cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRK----SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      ||.|++|+......    ..+..++.|..-|..++...    +++.|++++.|-+|++|+.....               
T Consensus        46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~~---------------  106 (735)
T KOG0308|consen   46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKDN---------------  106 (735)
T ss_pred             CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccCc---------------
Confidence            89999999653321    24667889999999999998    89999999999999999998731               


Q ss_pred             eeccccccccCCccCeEEEEe-cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKF-YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        .-++.+++.|.+.|.|++. .++..  +++|||-|+.|.+||++.... .......   ..+...+.          .
T Consensus       107 --~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~-~l~~s~n---~~t~~sl~----------s  168 (735)
T KOG0308|consen  107 --TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTA-TLVASFN---NVTVNSLG----------S  168 (735)
T ss_pred             --chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcch-hhhhhcc---ccccccCC----------C
Confidence              1567888999999999999 66665  999999999999999986533 0000000   00000000          0


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      .+...|++++.++.+..+++|+..+.+++||.++.+.+..+++|...|+++..+++|..++++|.||+|++||+...+++
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            22235899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      .++        ..|...|+++..+|+-.++++|+.||.|..
T Consensus       249 ~T~--------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  249 ATY--------IVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             eeE--------EeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            998        688888999999999999999999998864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.6e-31  Score=198.77  Aligned_cols=239  Identities=19%  Similarity=0.277  Sum_probs=181.8

Q ss_pred             CCceeeeccccccccc--------eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643            2 CGDSTNWDEDAYRKSI--------LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK   73 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   73 (279)
                      .|.|.|||........        -..+.+|..+-++|+|++.   ..-.|++++.|++|++||++.......       
T Consensus       146 ~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~---~~g~Lls~~~d~~i~lwdi~~~~~~~~-------  215 (422)
T KOG0264|consen  146 SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ---QEGTLLSGSDDHTICLWDINAESKEDK-------  215 (422)
T ss_pred             CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc---cceeEeeccCCCcEEEEeccccccCCc-------
Confidence            5789999965433211        1267899998899999994   677899999999999999986432100       


Q ss_pred             cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                           ...+...+.+|+..|..++|++... .+|++++.|+.+.|||+|.. ..+....... +                
T Consensus       216 -----~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~a-h----------------  271 (422)
T KOG0264|consen  216 -----VVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSN-TSKPSHSVKA-H----------------  271 (422)
T ss_pred             -----cccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCC-CCCCcccccc-c----------------
Confidence                 0355677889999999999999876 58999999999999999863 2222222222 2                


Q ss_pred             ccCCCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeC
Q 023643          154 GALSPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~  230 (279)
                           ...++|++|+|- +..||+|+.|++|.+||+|+. +++.++.+|...|.++.|+|. ...|++++.|+.+.|||+
T Consensus       272 -----~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  272 -----SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             -----CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence                 224799999994 457899999999999999984 688899999999999999996 678999999999999999


Q ss_pred             CCCceEEEec----CCc--cccccCcceeeeEEEEcCCCCE-EEEEcCcceEEeCC
Q 023643          231 KSGKCIKVID----PVK--DKQLKGVISCVSCITLDASESW-LVRVRATNYVILFS  279 (279)
Q Consensus       231 ~~~~~~~~~~----~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd  279 (279)
                      ..-...+.-.    .+.  .....||...|..+.|+|+..+ |++.+.|+.+.||.
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            6522111100    000  0122689999999999998765 56778999999994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-31  Score=181.62  Aligned_cols=201  Identities=18%  Similarity=0.241  Sum_probs=176.8

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV   96 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   96 (279)
                      .+..+..+.++|.++.|+-    +|++.+++++|.+|++|++..                   +..++++.+|...|..+
T Consensus         9 r~~~l~~~qgaV~avryN~----dGnY~ltcGsdrtvrLWNp~r-------------------g~liktYsghG~EVlD~   65 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNV----DGNYCLTCGSDRTVRLWNPLR-------------------GALIKTYSGHGHEVLDA   65 (307)
T ss_pred             hceeecccccceEEEEEcc----CCCEEEEcCCCceEEeecccc-------------------cceeeeecCCCceeeec
Confidence            3556778899999999999    999999999999999999998                   78899999999999999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      +.+.++.  .|++|+.|..+.+||++++   +....+.++..                      +|+.+.|+.+...+++
T Consensus        66 ~~s~Dns--kf~s~GgDk~v~vwDV~TG---kv~Rr~rgH~a----------------------qVNtV~fNeesSVv~S  118 (307)
T KOG0316|consen   66 ALSSDNS--KFASCGGDKAVQVWDVNTG---KVDRRFRGHLA----------------------QVNTVRFNEESSVVAS  118 (307)
T ss_pred             ccccccc--ccccCCCCceEEEEEcccC---eeeeecccccc----------------------eeeEEEecCcceEEEe
Confidence            9999887  9999999999999998764   44555555332                      3899999999999999


Q ss_pred             ecCCCeEEEEecCC--CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643          177 AAGDSCAYCWDVES--SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       177 ~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      |+.|.++++||.++  .++++.+......|.++...  +..|++||.||+++.||++.|+.....        .+  .+|
T Consensus       119 gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy--------~g--~pi  186 (307)
T KOG0316|consen  119 GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY--------FG--HPI  186 (307)
T ss_pred             ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh--------cC--Ccc
Confidence            99999999999986  47888888888889999876  788999999999999999999876655        23  489


Q ss_pred             eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          255 SCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++|+++++..++++.|+++++-|
T Consensus       187 t~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             eeEEecCCCCEEEEeeccceeeecc
Confidence            9999999999999999999999865

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=203.88  Aligned_cols=231  Identities=18%  Similarity=0.153  Sum_probs=170.9

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc---------------ccccCCccc---------
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL---------------PLGLSNSKV---------   74 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~---------   74 (279)
                      ..+.+|+..|.++++.|    .|.+|++|+.|.+|++||+..+....               .+.+++.+.         
T Consensus       161 i~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             EeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            45778899999999999    89999999999999999998654322               112222111         


Q ss_pred             -ceeee---------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643           75 -QQLLG---------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV  138 (279)
Q Consensus        75 -~~~~~---------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  138 (279)
                       -.++.               ..-+..-++|...+++.+|+|..+ ..|+|++.||++|||++++......++.......
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence             00110               233445678999999999999887 5899999999999999987655544444443332


Q ss_pred             cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EE-EEeecCCc--ceEEEEEcCCC
Q 023643          139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IK-MVFKGHSD--YLHCIVARNST  213 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~-~~~~~~~~--~i~~i~~~~~~  213 (279)
                      ..+                   .+++++|+|+++++|+|+.||.|.+|+..+..  +. ..-+.|..  .|+||.|+++|
T Consensus       316 ~Rv-------------------~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  316 KRV-------------------PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             ccc-------------------CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence            222                   37899999999999999999999999986532  22 23346776  89999999999


Q ss_pred             cEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEeCC
Q 023643          214 NQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVILFS  279 (279)
Q Consensus       214 ~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd  279 (279)
                      ++|++-+.|+++++||++.. +++.....-      ....+-+.++|||+.++|+||+.      .|++.+||
T Consensus       377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d  443 (641)
T KOG0772|consen  377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD  443 (641)
T ss_pred             chhhhccCCCceeeeeccccccchhhhcCC------CccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence            99999999999999999974 444443211      11234578899999999999864      45666664

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.7e-30  Score=209.22  Aligned_cols=230  Identities=16%  Similarity=0.185  Sum_probs=188.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |=.|++|+.+..  .++.++.+|-+-|..+.|++    .-.+++++|.|-+|+||+..+                   .+
T Consensus        72 DykIkVWnYk~r--rclftL~GHlDYVRt~~FHh----eyPWIlSASDDQTIrIWNwqs-------------------r~  126 (1202)
T KOG0292|consen   72 DYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHH----EYPWILSASDDQTIRIWNWQS-------------------RK  126 (1202)
T ss_pred             ccEEEEEecccc--eehhhhccccceeEEeeccC----CCceEEEccCCCeEEEEeccC-------------------Cc
Confidence            457999998887  55889999999999999999    789999999999999999999                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-----eccCc--------ccceEEeecCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-----LQGNH--------VKPVLDLVNHQ  148 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~  148 (279)
                      ++..+.||...|.|..|+|...  +++|+|-|.+||+||+.-.+.......     +.+.+        ...+.....  
T Consensus       127 ~iavltGHnHYVMcAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL--  202 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL--  202 (1202)
T ss_pred             eEEEEecCceEEEeeccCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee--
Confidence            8999999999999999999887  999999999999999864322111111     11111        011222222  


Q ss_pred             CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEE
Q 023643          149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR  226 (279)
Q Consensus       149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~  226 (279)
                             ..|...|+-++|+|.-.++++|+.|..|++|....-+  .+-+.++|.+.|.++-|+|..+++++.|+|++|+
T Consensus       203 -------EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir  275 (1202)
T KOG0292|consen  203 -------EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR  275 (1202)
T ss_pred             -------cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence                   2334468999999999999999999999999986543  4557789999999999999999999999999999


Q ss_pred             EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643          227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV  275 (279)
Q Consensus       227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  275 (279)
                      |||+...+.++++        +......+.++-+|..+++|+|-..|.+
T Consensus       276 VwDm~kRt~v~tf--------rrendRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  276 VWDMTKRTSVQTF--------RRENDRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             EEecccccceeee--------eccCCeEEEEEecCCcceeeeecCCceE
Confidence            9999999999998        4455678899999999988888766654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=8.6e-31  Score=210.82  Aligned_cols=212  Identities=23%  Similarity=0.340  Sum_probs=182.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |+++++|+..... .+...+.+|.+.|+++++..    .+.+|++|+.|.++++||..+                   +.
T Consensus       227 ~~tl~~~~~~~~~-~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~s-------------------g~  282 (537)
T KOG0274|consen  227 DSTLHLWDLNNGY-LILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCST-------------------GE  282 (537)
T ss_pred             CceeEEeecccce-EEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCC-------------------Cc
Confidence            6788999977664 33444999999999999997    689999999999999999998                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      +...+.+|...|.++...+.    ++++|+.|.+|++|++.+   ......+.+ +..                     +
T Consensus       283 C~~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n---~~~l~l~~~-h~~---------------------~  333 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTN---GACLNLLRG-HTG---------------------P  333 (537)
T ss_pred             EEEEecCCCceEEEEEccCc----eEeeccCCceEEEEeccC---cceEEEecc-ccc---------------------c
Confidence            89999999999999988765    789999999999999863   233333333 333                     3


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~  240 (279)
                      |+++..+  +.++++|+.|++|++||+.+++++.++.+|..+|+++.+.+. ..+++|+.|++|++||+++. +++.++ 
T Consensus       334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-  409 (537)
T KOG0274|consen  334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-  409 (537)
T ss_pred             EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-
Confidence            6888887  779999999999999999999999999999999999988755 89999999999999999999 899888 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|..-+..+.+  .+++|++++.|++|++||
T Consensus       410 -------~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD  439 (537)
T KOG0274|consen  410 -------QGHTSLVSSLLL--RDNFLVSSSADGTIKLWD  439 (537)
T ss_pred             -------cCCccccccccc--ccceeEeccccccEEEee
Confidence                   688877866555  578999999999999997

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=9.1e-32  Score=194.19  Aligned_cols=207  Identities=21%  Similarity=0.330  Sum_probs=173.3

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ...-+.|..|+|    |+++|++|+.||-|.+|+..+++....+.           .+....+.-+..+|.|++|+.+..
T Consensus       212 ~KSh~EcA~FSP----DgqyLvsgSvDGFiEVWny~~GKlrKDLk-----------YQAqd~fMMmd~aVlci~FSRDsE  276 (508)
T KOG0275|consen  212 QKSHVECARFSP----DGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----------YQAQDNFMMMDDAVLCISFSRDSE  276 (508)
T ss_pred             cccchhheeeCC----CCceEeeccccceeeeehhccchhhhhhh-----------hhhhcceeecccceEEEeecccHH
Confidence            456688999999    99999999999999999999865443322           222334555789999999999998


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        ++++|+.||.|++|.++++   .+...+...|.+                     .|+|+.|+.|+..+++++.|.++
T Consensus       277 --MlAsGsqDGkIKvWri~tG---~ClRrFdrAHtk---------------------Gvt~l~FSrD~SqiLS~sfD~tv  330 (508)
T KOG0275|consen  277 --MLASGSQDGKIKVWRIETG---QCLRRFDRAHTK---------------------GVTCLSFSRDNSQILSASFDQTV  330 (508)
T ss_pred             --HhhccCcCCcEEEEEEecc---hHHHHhhhhhcc---------------------CeeEEEEccCcchhhcccccceE
Confidence              9999999999999998754   555555544433                     37999999999999999999999


Q ss_pred             EEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-
Q 023643          184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-  262 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  262 (279)
                      ++.-+.+|+++.+|++|.+.|+...|.++|.++++++.||+|++|+.++++++.++.+      .+...+|..+..-|. 
T Consensus       331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------~~~d~~vnsv~~~PKn  404 (508)
T KOG0275|consen  331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------LGTDYPVNSVILLPKN  404 (508)
T ss_pred             EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------CCCcccceeEEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999976      355667888887774 


Q ss_pred             CCEEEEEcCcceEEe
Q 023643          263 ESWLVRVRATNYVIL  277 (279)
Q Consensus       263 ~~~l~~~~~d~~i~~  277 (279)
                      ...++.+...+++.+
T Consensus       405 peh~iVCNrsntv~i  419 (508)
T KOG0275|consen  405 PEHFIVCNRSNTVYI  419 (508)
T ss_pred             CceEEEEcCCCeEEE
Confidence            456777776666654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.5e-29  Score=180.41  Aligned_cols=223  Identities=13%  Similarity=0.105  Sum_probs=174.2

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCC-------------------ccc-----
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSN-------------------SKV-----   74 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~-----   74 (279)
                      +.+..-...|.++.|++    +|.+|++++.|.+|+|||..++.....+....                   .+.     
T Consensus         8 k~f~~~~~~i~sl~fs~----~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSD----DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccCCCceeEEEecC----CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            34444568899999999    99999999999999999999877655222111                   011     


Q ss_pred             -ceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           75 -QQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        75 -~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                       ..+.+.+.++.+.||...|++|+.+|-+.  .+++++.|++|++||++.. ..+-.....+                  
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~------------------  142 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVK-KCQGLLNLSG------------------  142 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCC-CCceEEecCC------------------
Confidence             11222677889999999999999999997  9999999999999999843 2222222222                  


Q ss_pred             ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                              -..++|+|+|-.+|++.....|++||+++-  .+..+|.-   .......|.|+|+|++|+.+...+.+++.
T Consensus       143 --------~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  143 --------RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL  214 (311)
T ss_pred             --------CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence                    146799999999999998889999999863  45555543   35678999999999999999999999999


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |.-+|..+..+..+.    .....+ -..+|.||++++++|+.||+|.+|+
T Consensus       215 DAf~G~~~~tfs~~~----~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  215 DAFDGTVKSTFSGYP----NAGNLP-LSATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             EccCCcEeeeEeecc----CCCCcc-eeEEECCCCcEEEEecCCCcEEEEE
Confidence            999999888886543    111122 4677999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.8e-30  Score=203.10  Aligned_cols=228  Identities=17%  Similarity=0.293  Sum_probs=191.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .+.+++|+.++.  ++++++.  .+-+.+..|.|    .++++++|...|.+.+||+.+                   ..
T Consensus       393 ~~SikiWn~~t~--kciRTi~--~~y~l~~~Fvp----gd~~Iv~G~k~Gel~vfdlaS-------------------~~  445 (888)
T KOG0306|consen  393 GESIKIWNRDTL--KCIRTIT--CGYILASKFVP----GDRYIVLGTKNGELQVFDLAS-------------------AS  445 (888)
T ss_pred             CCcEEEEEccCc--ceeEEec--cccEEEEEecC----CCceEEEeccCCceEEEEeeh-------------------hh
Confidence            478999998876  4465554  34888999999    899999999999999999998                   67


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+.+.+.|.+.+.+++.+|++.  .+++||.|.+|++||..-...      ..+ ....+..+...      ....-...
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~~--g~vT~saDktVkfWdf~l~~~------~~g-t~~k~lsl~~~------rtLel~dd  510 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDNK--GFVTGSADKTVKFWDFKLVVS------VPG-TQKKVLSLKHT------RTLELEDD  510 (888)
T ss_pred             hhhhhhccccceeeeeecCCCC--ceEEecCCcEEEEEeEEEEec------cCc-ccceeeeeccc------eEEecccc
Confidence            7778889999999999999998  999999999999999743211      001 00011111000      00111224


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |.|+++|||+++|+++--|.++++|-+++-+..-++.+|.-||.||..+||++.++|||.|.+|+||-+.-|.|-+.+  
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--  588 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--  588 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh--
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            -+|...|.++.|.|....+.+++.|+.|+-||
T Consensus       589 ------fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  589 ------FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             ------hcccCceeEEEEcccceeEEEecCcceEEeec
Confidence                  79999999999999999999999999999997

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.1e-30  Score=180.47  Aligned_cols=229  Identities=14%  Similarity=0.184  Sum_probs=180.2

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      +...+|...|.+++|+.    +|..|++|+.|+++.+|++....                 .......++|.+.|-.++|
T Consensus        14 r~~~~~~~~v~Sv~wn~----~g~~lasgs~dktv~v~n~e~~r-----------------~~~~~~~~gh~~svdql~w   72 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC----DGTKLASGSFDKTVSVWNLERDR-----------------FRKELVYRGHTDSVDQLCW   72 (313)
T ss_pred             HHhhhhhhcceEEEEcc----cCceeeecccCCceEEEEecchh-----------------hhhhhcccCCCcchhhhee
Confidence            46678999999999999    99999999999999999998742                 2223456789999999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC----------cc-----cceEEeecCCCCCccccCCCCCCce
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN----------HV-----KPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      .|..+ ..|++++.|.+|++||++..+....+..-.++          ..     .....+.................+.
T Consensus        73 ~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n  151 (313)
T KOG1407|consen   73 DPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN  151 (313)
T ss_pred             CCCCC-cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence            99876 59999999999999999865432221111110          00     0011111112222222333344678


Q ss_pred             eEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc
Q 023643          164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK  243 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  243 (279)
                      -++|+-++.+++.....|+|.|.....-+++..++.|.....||.|+|+|+++|+|+.|..+.+||+...-+++.+    
T Consensus       152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i----  227 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI----  227 (313)
T ss_pred             eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee----
Confidence            8899987787777777899999999999999999999999999999999999999999999999999999899988    


Q ss_pred             cccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          244 DKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                          ..+.-+|..+.|+.||++||+||+|..|-|
T Consensus       228 ----sRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  228 ----SRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ----ccccCceEEEEeccCcceeeccCccceEEe
Confidence                678889999999999999999999987754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.3e-30  Score=203.99  Aligned_cols=230  Identities=17%  Similarity=0.263  Sum_probs=193.2

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|.+.+||+...  ..+.+.+.|.+.|+.++.+|    |+..+++|+.|.+|++||+.-...      .+......+...
T Consensus       433 ~Gel~vfdlaS~--~l~Eti~AHdgaIWsi~~~p----D~~g~vT~saDktVkfWdf~l~~~------~~gt~~k~lsl~  500 (888)
T KOG0306|consen  433 NGELQVFDLASA--SLVETIRAHDGAIWSISLSP----DNKGFVTGSADKTVKFWDFKLVVS------VPGTQKKVLSLK  500 (888)
T ss_pred             CCceEEEEeehh--hhhhhhhccccceeeeeecC----CCCceEEecCCcEEEEEeEEEEec------cCcccceeeeec
Confidence            478888987776  34667779999999999999    999999999999999999864221      111111111122


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ..+++. -+..|.|++++|+++  +|+.+=-|.++++|-+++.   +....+.||..                      +
T Consensus       501 ~~rtLe-l~ddvL~v~~Spdgk--~LaVsLLdnTVkVyflDtl---KFflsLYGHkL----------------------P  552 (888)
T KOG0306|consen  501 HTRTLE-LEDDVLCVSVSPDGK--LLAVSLLDNTVKVYFLDTL---KFFLSLYGHKL----------------------P  552 (888)
T ss_pred             cceEEe-ccccEEEEEEcCCCc--EEEEEeccCeEEEEEecce---eeeeeeccccc----------------------c
Confidence            222332 456799999999998  9999999999999998753   45555555433                      3


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |.|+.++||+++++||+.|.+|++|-++-|.+-.++-+|...|.++.|-|....+.+++.|+.|+-||-..-+.++.+  
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L--  630 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL--  630 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee--
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .+|...|+|++.+|+|.+++++|.|.+|++|.
T Consensus       631 ------~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  631 ------DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             ------ccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence                  79999999999999999999999999999994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.5e-30  Score=193.81  Aligned_cols=215  Identities=16%  Similarity=0.240  Sum_probs=176.0

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG   84 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (279)
                      +.||+..+..  ..+.+.-....|+++.|..    ||.+||+|...|.|+|||+.+                   ...++
T Consensus        50 vqly~~~~~~--~~k~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~-------------------r~iLR  104 (487)
T KOG0310|consen   50 VQLYSSVTRS--VRKTFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKS-------------------RVILR  104 (487)
T ss_pred             EEEEecchhh--hhhhHHhhccceeEEEeec----CCeEEEccCCcCcEEEecccc-------------------HHHHH
Confidence            5566655543  2444555668899999999    999999999999999999766                   56778


Q ss_pred             cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      .+.+|+.+|..+.|+|.++ ..|++|+.|+.+++||+.+..   ....+.++                      ...|+|
T Consensus       105 ~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~a~---v~~~l~~h----------------------tDYVR~  158 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLSTAY---VQAELSGH----------------------TDYVRC  158 (487)
T ss_pred             HHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCCcE---EEEEecCC----------------------cceeEe
Confidence            8999999999999999877 689999999999999987542   22233332                      224899


Q ss_pred             EEEcCCCC-eEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          165 IAVDPQGG-AIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       165 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      .+|+|... .+++|+.||.|++||+++. ..+.++. |..+|..+.+-|.|..|++++ ...|+|||+-+|..+....  
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~--  234 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM--  234 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh--
Confidence            99999655 8899999999999999987 6667775 999999999999999999987 4569999998665443331  


Q ss_pred             ccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          243 KDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       243 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                           ..|...|+|+++..++..|++|+-|+.|++||
T Consensus       235 -----~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  235 -----FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD  266 (487)
T ss_pred             -----hcccceEEEEEeecCCceEeecccccceEEEE
Confidence                 45889999999999999999999999999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.4e-29  Score=207.67  Aligned_cols=239  Identities=18%  Similarity=0.227  Sum_probs=182.6

Q ss_pred             CCCceeeeccccc----------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643            1 MCGDSTNWDEDAY----------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         1 ~dG~v~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      +||.++||+.+.-          ....+.+...|.+.|.|+.|+|    ||.+||+|+.|+.|.||..... .......+
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~----dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs  109 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP----DGSYLASGSDDRLVMIWERAEI-GSGTVFGS  109 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC----CCCeEeeccCcceEEEeeeccc-CCcccccc
Confidence            4788889985421          1234556778999999999999    9999999999999999998852 11111111


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                      ..+....-..+....+++|...|..++|+|++.  +|++++.|++|.+|+.++.   .....+.+|+..           
T Consensus       110 ~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~-----------  173 (942)
T KOG0973|consen  110 TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSL-----------  173 (942)
T ss_pred             cccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc---eeeeeeeccccc-----------
Confidence            111111112567788999999999999999998  9999999999999997665   444445544332           


Q ss_pred             CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE-------------------------------------
Q 023643          151 GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI-------------------------------------  193 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------------  193 (279)
                                 |-.+.|+|-|++|++-+.|++|++|++.+...                                     
T Consensus       174 -----------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  174 -----------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             -----------ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence                       67888999999999999999999998653211                                     


Q ss_pred             ---------------EEEeecCCcceEEEEEcCC-----Cc------------EEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          194 ---------------KMVFKGHSDYLHCIVARNS-----TN------------QIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       194 ---------------~~~~~~~~~~i~~i~~~~~-----~~------------~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                                     -..|-+|.+++.+++|+|.     .+            .+|+|+.|++|.||.....+++..+. 
T Consensus       243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-  321 (942)
T KOG0973|consen  243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH-  321 (942)
T ss_pred             CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-
Confidence                           1124589999999999872     12            67899999999999987777777663 


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                            .-....|..++|+|||..|+++|.||+|.++
T Consensus       322 ------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  322 ------NLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             ------hhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence                  3455689999999999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=5.1e-30  Score=191.89  Aligned_cols=219  Identities=22%  Similarity=0.299  Sum_probs=172.5

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      -.|.++|+.+.+-|.   +...+|+++..+.|.|||..+.........         ..++-..+.+|++.-++|+|++.
T Consensus       121 i~h~gEVnRaRymPQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~  188 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQ  188 (422)
T ss_pred             ccCCccchhhhhCCC---CCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccc
Confidence            358999999999994   888999999999999999987543322110         03555678899998899999998


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGD  180 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  180 (279)
                      .. -.|++++.|++|++||++........       ..+...+           ..+...|..++|++.. .+|++++.|
T Consensus       189 ~~-g~Lls~~~d~~i~lwdi~~~~~~~~~-------~~p~~~~-----------~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  189 QE-GTLLSGSDDHTICLWDINAESKEDKV-------VDPKTIF-----------SGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             cc-eeEeeccCCCcEEEEeccccccCCcc-------ccceEEe-----------ecCCcceehhhccccchhhheeecCC
Confidence            77 48999999999999999754332000       0010000           0112247899999844 578889999


Q ss_pred             CeEEEEecC--CCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeE
Q 023643          181 SCAYCWDVE--SSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       181 ~~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      +.+.|||+|  +.++....++|.+.|.|++|+| ++..||+||.|++|++||+|+. +++.++        .+|...|.+
T Consensus       250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--------e~H~dev~~  321 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF--------EGHEDEVFQ  321 (422)
T ss_pred             CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec--------cCCCcceEE
Confidence            999999999  5667778889999999999999 5778999999999999999985 455666        799999999


Q ss_pred             EEEcCC-CCEEEEEcCcceEEeCC
Q 023643          257 ITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       257 ~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      +.|+|+ ...||+++.|+.+.+||
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEe
Confidence            999996 56888999999999997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.5e-29  Score=178.58  Aligned_cols=235  Identities=14%  Similarity=0.183  Sum_probs=176.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||+||+|+++......-+....|.++|.+++|+.    +|..+++|+.|+.+++||+.+                   + 
T Consensus        49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dgskVf~g~~Dk~~k~wDL~S-------------------~-  104 (347)
T KOG0647|consen   49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DGSKVFSGGCDKQAKLWDLAS-------------------G-  104 (347)
T ss_pred             CCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CCceEEeeccCCceEEEEccC-------------------C-
Confidence            8999999988742223356667899999999999    999999999999999999998                   3 


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee-----------------ccCcccceEEe
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL-----------------QGNHVKPVLDL  144 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~~~~~~~  144 (279)
                      ....+..|.++|..+.|.+......|+|||.|.+|+.||++..... ....+                 ..+....++.+
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv-~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV-ATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee-eeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence            3456677999999999998665458999999999999999853211 11111                 01111122222


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeecCCc---------ceEEEEEcCCC
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSD---------YLHCIVARNST  213 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~---------~i~~i~~~~~~  213 (279)
                      .++.....-....-.-.++|++..++....+.|+-+|.+-+..+..+  +.-..|+.|..         .|.+|+|+|..
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence            22211111111112236899999999888899999999999998876  44456777762         57789999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          214 NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       214 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      ..|++++.||++.+||-.....+...        ..|..+|++.+|+.+|.++|-+
T Consensus       264 gtlvTaGsDGtf~FWDkdar~kLk~s--------~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDARTKLKTS--------ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ceEEEecCCceEEEecchhhhhhhcc--------CcCCCccceeEecCCCCEEEEE
Confidence            99999999999999998877777776        6788899999999999998865

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.5e-28  Score=197.61  Aligned_cols=217  Identities=18%  Similarity=0.262  Sum_probs=160.2

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC-CCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG-GNE  103 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~  103 (279)
                      -..|.....++    ++..+++++.+.....|+...+....  .....  +..  ......+.+|.++|.+++|+| ++.
T Consensus        20 ~~~i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~--~~~~~--G~~--~~~~~~l~GH~~~V~~v~fsP~d~~   89 (493)
T PTZ00421         20 FLNVTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVL--KHTDY--GKL--ASNPPILLGQEGPIIDVAFNPFDPQ   89 (493)
T ss_pred             eeccccccccC----CCCCcEeECCceEEEEEecCCceEEe--ecccc--ccC--CCCCceEeCCCCCEEEEEEcCCCCC
Confidence            34566666777    66777888888888888876542111  11100  000  111234778999999999999 666


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCe
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSC  182 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~  182 (279)
                        +|++++.|++|++||+........       ...++..+           ..+...|.+++|+|++ ++|++++.|+.
T Consensus        90 --~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L-----------~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         90 --KLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHL-----------QGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             --EEEEEeCCCEEEEEecCCCccccc-------cCcceEEe-----------cCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence              999999999999999864311100       00111111           1122348999999975 68999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee-eeEEEEcC
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC-VSCITLDA  261 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~  261 (279)
                      |++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+        .+|... +..+.|.+
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl--------~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV--------EAHASAKSQRCLWAK  221 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE--------ecCCCCcceEEEEcC
Confidence            999999999999999999999999999999999999999999999999999988887        455443 45677899


Q ss_pred             CCCEEEEEc----CcceEEeCC
Q 023643          262 SESWLVRVR----ATNYVILFS  279 (279)
Q Consensus       262 ~~~~l~~~~----~d~~i~~wd  279 (279)
                      ++..+++++    .|+.|++||
T Consensus       222 ~~~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        222 RKDLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             CCCeEEEEecCCCCCCeEEEEe
Confidence            887777654    479999997

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.5e-29  Score=179.60  Aligned_cols=216  Identities=15%  Similarity=0.208  Sum_probs=176.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |-+|+|||+....  .+..+-.|.+.|+++.|.+..+  .+.|++|+.||.|.+|+...                   ..
T Consensus        62 DetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S--~shLlS~sdDG~i~iw~~~~-------------------W~  118 (362)
T KOG0294|consen   62 DETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLS--KSHLLSGSDDGHIIIWRVGS-------------------WE  118 (362)
T ss_pred             CCcEEEEeccchh--hhcceeccccceEEEEecCCcc--hhheeeecCCCcEEEEEcCC-------------------eE
Confidence            7799999988764  3667778999999999998321  23899999999999999998                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+..+++|.+.|+.++.+|.++  +.++.+.|+.+++||+-.++... ...+..                         .
T Consensus       119 ~~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV~Gr~a~-v~~L~~-------------------------~  170 (362)
T KOG0294|consen  119 LLKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLVRGRVAF-VLNLKN-------------------------K  170 (362)
T ss_pred             EeeeecccccccceeEecCCCc--eEEEEcCCceeeeehhhcCccce-eeccCC-------------------------c
Confidence            8899999999999999999998  99999999999999986542221 111111                         0


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .+.+.|+|.|.+++.+.. ..|-+|.+.+......+. ....+.|+.|- ++..|++|..|+.|++||..+..+...+  
T Consensus       171 at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~--  245 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF--  245 (362)
T ss_pred             ceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee--
Confidence            256899999998888775 568999998877666554 33556677664 6789999999999999999998888888  


Q ss_pred             CccccccCcceeeeEEEE--cCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITL--DASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .+|...|..+.+  .|++.+|+|+|.||.|++||
T Consensus       246 ------~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  246 ------LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             ------ecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence                  789999999984  46789999999999999997

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=201.71  Aligned_cols=204  Identities=15%  Similarity=0.197  Sum_probs=165.0

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+.+|.+.|..|.|+.     .++|++++.|.+||+|++..                   .+++..|. |.+.|+|++
T Consensus       362 ~~ef~GHt~DILDlSWSK-----n~fLLSSSMDKTVRLWh~~~-------------------~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  362 FCEFKGHTADILDLSWSK-----NNFLLSSSMDKTVRLWHPGR-------------------KECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             hhhhhccchhheeccccc-----CCeeEeccccccEEeecCCC-------------------cceeeEEe-cCCeeEEEE
Confidence            556789999999999998     58899999999999999998                   56777776 999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |+|... ++|++|+-||.||||++.+.   +...-..-+   .                    -|++++|.|+|+..++|
T Consensus       417 FnPvDD-ryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~---~--------------------lITAvcy~PdGk~avIG  469 (712)
T KOG0283|consen  417 FNPVDD-RYFISGSLDGKVRLWSISDK---KVVDWNDLR---D--------------------LITAVCYSPDGKGAVIG  469 (712)
T ss_pred             ecccCC-CcEeecccccceEEeecCcC---eeEeehhhh---h--------------------hheeEEeccCCceEEEE
Confidence            999766 59999999999999998542   111111111   1                    28999999999999999


Q ss_pred             cCCCeEEEEecCCCcEEEEeec--C------CcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          178 AGDSCAYCWDVESSRIKMVFKG--H------SDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~--~------~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      +.+|.+++|++...+....+.-  |      ...|+.+.|.|. ...+++.+.|..|||||++..+++..+.+..    .
T Consensus       470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~----n  545 (712)
T KOG0283|consen  470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR----N  545 (712)
T ss_pred             EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc----c
Confidence            9999999999987776655431  1      227999999984 4567778899999999999988888885432    1


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          249 GVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .  ..-....|+.||++|+++++|..|++|+
T Consensus       546 ~--~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  546 T--SSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             C--CcceeeeEccCCCEEEEeecCceEEEEe
Confidence            1  1234567999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=179.78  Aligned_cols=204  Identities=21%  Similarity=0.298  Sum_probs=175.0

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV   96 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   96 (279)
                      .+..+..|+..|.+++.+|    +.+++|||+.|..-.+|++.+                   ++....+.+|...|+++
T Consensus        56 S~~tF~~H~~svFavsl~P----~~~l~aTGGgDD~AflW~~~~-------------------ge~~~eltgHKDSVt~~  112 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHP----NNNLVATGGGDDLAFLWDIST-------------------GEFAGELTGHKDSVTCC  112 (399)
T ss_pred             ceeehhhcCCceEEEEeCC----CCceEEecCCCceEEEEEccC-------------------CcceeEecCCCCceEEE
Confidence            4567889999999999999    899999999999999999998                   56677888999999999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      .|+.++.  +|+||+.+|.|+||+..++...   ..+.. .                     ...+.=+.|+|.+..|+.
T Consensus       113 ~Fshdgt--lLATGdmsG~v~v~~~stg~~~---~~~~~-e---------------------~~dieWl~WHp~a~illA  165 (399)
T KOG0296|consen  113 SFSHDGT--LLATGDMSGKVLVFKVSTGGEQ---WKLDQ-E---------------------VEDIEWLKWHPRAHILLA  165 (399)
T ss_pred             EEccCce--EEEecCCCccEEEEEcccCceE---EEeec-c---------------------cCceEEEEecccccEEEe
Confidence            9999998  9999999999999997654221   11111 0                     012577899999999999


Q ss_pred             ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643          177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      |+.||.+-+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|++.+++++..+...       .....++
T Consensus       166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-------e~~~~~~  238 (399)
T KOG0296|consen  166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA-------EGLELPC  238 (399)
T ss_pred             ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc-------ccCcCCc
Confidence            999999999999998888999999999999999999999999999999999999999999998532       2345677


Q ss_pred             EEEcCCCCEEEEEcCcceEEe
Q 023643          257 ITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       257 ~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      +.++..+..+++|+.++.+++
T Consensus       239 ~~~~~~~~~~~~g~~e~~~~~  259 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNSEGVACG  259 (399)
T ss_pred             cccccccceeEeccCCccEEE
Confidence            888888888888888877654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.3e-29  Score=179.74  Aligned_cols=233  Identities=14%  Similarity=0.180  Sum_probs=185.5

Q ss_pred             CCCceeeeccccc----------------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcc
Q 023643            1 MCGDSTNWDEDAY----------------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISK   64 (279)
Q Consensus         1 ~dG~v~iw~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~   64 (279)
                      +|-.|+|.|++..                +...++++-.|.++|+++.|+|    ....|++|+.|++|++||+..... 
T Consensus       132 aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP----re~ILiS~srD~tvKlFDfsK~sa-  206 (430)
T KOG0640|consen  132 ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP----RETILISGSRDNTVKLFDFSKTSA-  206 (430)
T ss_pred             CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc----hhheEEeccCCCeEEEEecccHHH-
Confidence            4667888886511                1234667778999999999999    899999999999999999986321 


Q ss_pred             cccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe
Q 023643           65 LPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL  144 (279)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  144 (279)
                                     .+..+.++ ...+|.+++|+|.|.  +|+.|..-.++++||+++.+...... ....+       
T Consensus       207 ---------------KrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qh-------  260 (430)
T KOG0640|consen  207 ---------------KRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQH-------  260 (430)
T ss_pred             ---------------HHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC-ccccc-------
Confidence                           12222333 456899999999998  99999999999999987653221111 12222       


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCC-cceEEEEEcCCCcEEEEecCC
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHS-DYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-~~i~~i~~~~~~~~l~~~~~d  222 (279)
                                    ...|+++.+++.+++.++++.||.|++||--++++++++. .|. ..|.+..|..+++++++.+.|
T Consensus       261 --------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D  326 (430)
T KOG0640|consen  261 --------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD  326 (430)
T ss_pred             --------------ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence                          2248999999999999999999999999999999999886 354 468888999999999999999


Q ss_pred             CeEEEEeCCCCceEEEecCCcc-----------------------------------------ccccCcceeeeEEEEcC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKD-----------------------------------------KQLKGVISCVSCITLDA  261 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~  261 (279)
                      ..+++|.+.+++.+..+.+.-.                                         .--.+|++.+..+.-+|
T Consensus       327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP  406 (430)
T KOG0640|consen  327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP  406 (430)
T ss_pred             ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence            9999999999998887754310                                         01247999999999999


Q ss_pred             CCCEEEEEcCcceEEeC
Q 023643          262 SESWLVRVRATNYVILF  278 (279)
Q Consensus       262 ~~~~l~~~~~d~~i~~w  278 (279)
                      .+.-++|++.|-.+++|
T Consensus       407 ~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  407 VEPAFMTCSDDFRARFW  423 (430)
T ss_pred             CCCceeeecccceeeee
Confidence            99999999999999999

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.5e-28  Score=195.89  Aligned_cols=186  Identities=17%  Similarity=0.143  Sum_probs=143.8

Q ss_pred             ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCc
Q 023643           47 ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFT  125 (279)
Q Consensus        47 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~  125 (279)
                      |+.++.|++|+...                   ..++..+.+|.++|.+++|+|+ +.  +|++|+.|++|++||+.+..
T Consensus        50 GG~~gvI~L~~~~r-------------------~~~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~  108 (568)
T PTZ00420         50 GGLIGAIRLENQMR-------------------KPPVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHND  108 (568)
T ss_pred             CCceeEEEeeecCC-------------------CceEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCC
Confidence            55678889998776                   4556778899999999999997 55  99999999999999986432


Q ss_pred             cCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcEEEEeecCCcce
Q 023643          126 ESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRIKMVFKGHSDYL  204 (279)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  204 (279)
                      ....  ..    ..++..+           ..+...|.+++|+|++.. +++++.|+.|++||+++++.+..+. |...|
T Consensus       109 ~~~~--~i----~~p~~~L-----------~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V  170 (568)
T PTZ00420        109 ESVK--EI----KDPQCIL-----------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKL  170 (568)
T ss_pred             cccc--cc----ccceEEe-----------ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcE
Confidence            1000  00    0011111           112234899999998875 5788999999999999998887776 66789


Q ss_pred             EEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee-----eEEEEcCCCCEEEEEcCcc----eE
Q 023643          205 HCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV-----SCITLDASESWLVRVRATN----YV  275 (279)
Q Consensus       205 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~----~i  275 (279)
                      .+++|+|+|.+|++++.|+.|+|||+++++.+..+        .+|...+     ....|++++.+|++++.|+    .|
T Consensus       171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl--------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~V  242 (568)
T PTZ00420        171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF--------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREM  242 (568)
T ss_pred             EEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE--------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEE
Confidence            99999999999999999999999999999998888        4555433     3344678999999887764    79


Q ss_pred             EeCC
Q 023643          276 ILFS  279 (279)
Q Consensus       276 ~~wd  279 (279)
                      +|||
T Consensus       243 kLWD  246 (568)
T PTZ00420        243 KLWD  246 (568)
T ss_pred             EEEE
Confidence            9997

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.5e-28  Score=165.25  Aligned_cols=231  Identities=18%  Similarity=0.256  Sum_probs=171.7

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-----ccccCCccc------------ceee---
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-----PLGLSNSKV------------QQLL---   78 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~------------~~~~---   78 (279)
                      +..+.|.+.|+|.+|+|    +|++||+|++|.+|++..++...+..     .+.......            ..++   
T Consensus        83 kr~khhkgsiyc~~ws~----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~  158 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSP----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA  158 (350)
T ss_pred             eeccccCccEEEEEecC----ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence            34567899999999999    89999999999999998776543222     111111110            0010   


Q ss_pred             -------------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee
Q 023643           79 -------------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV  145 (279)
Q Consensus        79 -------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (279)
                                   .++..+.+.+|++-|.++--- ++-  ++++|+.|.+|++||++-..   +...+....        
T Consensus       159 gagdc~iy~tdc~~g~~~~a~sghtghilalysw-n~~--m~~sgsqdktirfwdlrv~~---~v~~l~~~~--------  224 (350)
T KOG0641|consen  159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSW-NGA--MFASGSQDKTIRFWDLRVNS---CVNTLDNDF--------  224 (350)
T ss_pred             CCCcceEEEeecCCCCcceeecCCcccEEEEEEe-cCc--EEEccCCCceEEEEeeeccc---eeeeccCcc--------
Confidence                         167777888999999886422 343  89999999999999987432   222221110        


Q ss_pred             cCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                         +.+    -.....|.+++..|.|++|++|..|....+||++.+++++.|..|...|+|+.|+|.-.|+++++.|..|
T Consensus       225 ---~~~----glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i  297 (350)
T KOG0641|consen  225 ---HDG----GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI  297 (350)
T ss_pred             ---cCC----CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence               000    0001247899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       226 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ++=|+.- .+...+..-   ....|...+..+.|+|..--+++.+.|.++.+|
T Consensus       298 kltdlqg-dla~el~~~---vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  298 KLTDLQG-DLAHELPIM---VVAEHKDKAIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             EEeeccc-chhhcCceE---EEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence            9999863 222221100   015677788889999999999999999999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=4.3e-29  Score=201.08  Aligned_cols=210  Identities=22%  Similarity=0.395  Sum_probs=181.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.++|+||..++  .+...+.+|.+.|.++...+      .++++|+.|.+|++|++.+                   +
T Consensus       269 ~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n-------------------~  321 (537)
T KOG0274|consen  269 TDKTERVWDCSTG--ECTHSLQGHTSSVRCLTIDP------FLLVSGSRDNTVKVWDVTN-------------------G  321 (537)
T ss_pred             cCCcEEeEecCCC--cEEEEecCCCceEEEEEccC------ceEeeccCCceEEEEeccC-------------------c
Confidence            4889999998877  66888999999999999877      6888999999999999998                   7


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ..+..+.+|.++|.++...  +.  ++++|+.|++|++||+.   ..++...+.+|..                      
T Consensus       322 ~~l~l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~----------------------  372 (537)
T KOG0274|consen  322 ACLNLLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPR---TGKCLKSLSGHTG----------------------  372 (537)
T ss_pred             ceEEEeccccccEEEEEec--CC--EEEEEecCceEEEEEhh---hceeeeeecCCcc----------------------
Confidence            7888888999999999998  44  99999999999999986   3456666666332                      


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +|.++.+.+. ..+++|+.|+.|++||+++. +++..+.+|.+-+..+.+  .+++|++++.|++|++||..++++++++
T Consensus       373 ~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  373 RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL  449 (537)
T ss_pred             eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeee
Confidence            3678877664 79999999999999999999 999999999998877665  4789999999999999999999999999


Q ss_pred             cCCccccccC-cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKG-VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .        + |...|+.+++.  ...+++++.||.+.+||
T Consensus       450 ~--------~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  450 E--------GRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             c--------cCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            4        4 66788888876  57789999999999997

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.9e-28  Score=183.16  Aligned_cols=231  Identities=13%  Similarity=0.195  Sum_probs=176.0

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG   84 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (279)
                      +.+|.+.....  ......-+++|.+++-+|    +|.+|+.|+-.|.|++|.+.+                   +..+.
T Consensus        63 l~vw~i~k~~~--~~q~~v~Pg~v~al~s~n----~G~~l~ag~i~g~lYlWelss-------------------G~LL~  117 (476)
T KOG0646|consen   63 LHVWEILKKDQ--VVQYIVLPGPVHALASSN----LGYFLLAGTISGNLYLWELSS-------------------GILLN  117 (476)
T ss_pred             ccccccCchhh--hhhhcccccceeeeecCC----CceEEEeecccCcEEEEEecc-------------------ccHHH
Confidence            45666555432  222333468899999999    899999999999999999999                   78888


Q ss_pred             cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      .+.+|-.+|+++.|+.++.  +|+|||.||.|.+|.+-+.-..     ...+...|+..+.  .|         .-.|+.
T Consensus       118 v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a-----~~~~~~~p~~~f~--~H---------tlsITD  179 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSA-----DNDHSVKPLHIFS--DH---------TLSITD  179 (476)
T ss_pred             HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeeccc-----ccCCCccceeeec--cC---------cceeEE
Confidence            9999999999999999998  9999999999999997432111     0111122222111  11         113677


Q ss_pred             EEEcCC--CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc--eE----
Q 023643          165 IAVDPQ--GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK--CI----  236 (279)
Q Consensus       165 ~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~----  236 (279)
                      +...+.  ..++++++.|.++++||+..+.++.++. ....+.+++.+|.++.+..|+.+|.|.+.++....  ..    
T Consensus       180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~  258 (476)
T KOG0646|consen  180 LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ  258 (476)
T ss_pred             EEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence            766653  4589999999999999999999988886 56789999999999999999999999998875432  11    


Q ss_pred             EE--ecCCccccccCcce--eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KV--IDPVKDKQLKGVIS--CVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~--~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.  ........+.+|..  .|+|++.+-||..|++|+.||.|++||
T Consensus       259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            11  11111234478887  999999999999999999999999997

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.3e-30  Score=183.86  Aligned_cols=221  Identities=17%  Similarity=0.172  Sum_probs=182.5

Q ss_pred             CCCceeeecccccccc------ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643            1 MCGDSTNWDEDAYRKS------ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV   74 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   74 (279)
                      .||-|.+||..+++..      .-..+-.+..+|.|+.|+.    |...||+|+.||.|++|.+.+              
T Consensus       233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR----DsEMlAsGsqDGkIKvWri~t--------------  294 (508)
T KOG0275|consen  233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR----DSEMLASGSQDGKIKVWRIET--------------  294 (508)
T ss_pred             ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc----cHHHhhccCcCCcEEEEEEec--------------
Confidence            3899999997665421      1123446789999999999    999999999999999999999              


Q ss_pred             ceeeecccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           75 QQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        75 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                           +.+++.|. .|...|+++.|+.++.  .+++++.|.++++.-+..   ++....+.++..               
T Consensus       295 -----G~ClRrFdrAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKS---GK~LKEfrGHsS---------------  349 (508)
T KOG0275|consen  295 -----GQCLRRFDRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKS---GKCLKEFRGHSS---------------  349 (508)
T ss_pred             -----chHHHHhhhhhccCeeEEEEccCcc--hhhcccccceEEEecccc---chhHHHhcCccc---------------
Confidence                 78888886 7999999999999998  999999999999998754   345555555432               


Q ss_pred             ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec----------------------------------
Q 023643          154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG----------------------------------  199 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------------------------------  199 (279)
                             .|+...|.++|..+++++.||+|++|+..+.+++.+|+.                                  
T Consensus       350 -------yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~  422 (508)
T KOG0275|consen  350 -------YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM  422 (508)
T ss_pred             -------cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence                   268889999999999999999999999887665544321                                  


Q ss_pred             -------------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE
Q 023643          200 -------------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL  266 (279)
Q Consensus       200 -------------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  266 (279)
                                   ..+...+.+.+|.|.++.+.+.|+.++.|...+|+...++        .-|...|-+++-+|..+.|
T Consensus       423 qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl--------~VhEkdvIGl~HHPHqNll  494 (508)
T KOG0275|consen  423 QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL--------PVHEKDVIGLTHHPHQNLL  494 (508)
T ss_pred             cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee--------ecccccccccccCcccchh
Confidence                         1122345678899999999999999999999999999998        6777888999999999999


Q ss_pred             EEEcCcceEEeCC
Q 023643          267 VRVRATNYVILFS  279 (279)
Q Consensus       267 ~~~~~d~~i~~wd  279 (279)
                      |+-++||.+++|-
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999993

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.2e-28  Score=193.52  Aligned_cols=213  Identities=20%  Similarity=0.331  Sum_probs=181.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEE-EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFR-TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||++++|+.++........+.+|.+-|.. ++|-+.   ++-+|++|+.|+.|.+|...+                   .
T Consensus        34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~-------------------~   91 (745)
T KOG0301|consen   34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQ-------------------A   91 (745)
T ss_pred             CCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEEEecCC-------------------C
Confidence            89999999877765445567777787777 888873   677899999999999999998                   7


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .|..++++|+..|.++....++   .++|||.|.++++|....     ....+.+|. .                     
T Consensus        92 ~P~~~LkgH~snVC~ls~~~~~---~~iSgSWD~TakvW~~~~-----l~~~l~gH~-a---------------------  141 (745)
T KOG0301|consen   92 EPLYTLKGHKSNVCSLSIGEDG---TLISGSWDSTAKVWRIGE-----LVYSLQGHT-A---------------------  141 (745)
T ss_pred             CchhhhhccccceeeeecCCcC---ceEecccccceEEecchh-----hhcccCCcc-h---------------------
Confidence            8999999999999999987766   599999999999999643     222233332 2                     


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.+++.-|++ .+++|+.|.+|++|.-  ++.+++|.+|...|+.+++-++ ..+++++.||.|++|++ +|+++.+. 
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~-  215 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEM-  215 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeee-
Confidence            36788888876 8999999999999985  8899999999999999999865 56789999999999998 78888888 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|+..|.+++..+++..++++++|+++++|+
T Consensus       216 -------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  216 -------HGHTNFVYSISMALSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             -------eccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence                   79999999999888889999999999999995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.2e-27  Score=170.53  Aligned_cols=218  Identities=17%  Similarity=0.237  Sum_probs=170.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |-+||.-++...  +.++-+.+|...|.+|+.+|    -++.+++++.|++|++||++..                   +
T Consensus        79 d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP----~~d~FlS~S~D~tvrLWDlR~~-------------------~  133 (311)
T KOG1446|consen   79 DDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSP----KDDTFLSSSLDKTVRLWDLRVK-------------------K  133 (311)
T ss_pred             CCceEEEEeecC--ceEEEcCCCCceEEEEEecC----CCCeEEecccCCeEEeeEecCC-------------------C
Confidence            456777777766  45889999999999999999    6799999999999999999973                   3


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCc-ceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESK-VPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +...+..  ..-...+|.|.|-  ++|++.....|++||++....+. ....+....                     ..
T Consensus       134 cqg~l~~--~~~pi~AfDp~GL--ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---------------------~~  188 (311)
T KOG1446|consen  134 CQGLLNL--SGRPIAAFDPEGL--IFALANGSELIKLYDLRSFDKGPFTTFSITDND---------------------EA  188 (311)
T ss_pred             CceEEec--CCCcceeECCCCc--EEEEecCCCeEEEEEecccCCCCceeEccCCCC---------------------cc
Confidence            3333322  2234578999997  88888887799999998653221 122222111                     11


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcce---EEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYL---HCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i---~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      +.+.+.|+|+|+.++.++..+.+++.|.-+|..+.++..+...-   ...+|.|+++++++|+.||+|.+|++++++.+.
T Consensus       189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence            36899999999999999999999999999999999988765432   567899999999999999999999999999999


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+.+       .+..++.++.|.|.-..+++++  ..+.+|
T Consensus       269 ~~~~-------~~~~~~~~~~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  269 VLRG-------PNGGPVSCVRFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             EecC-------CCCCCccccccCCceeeeeecC--ceEEEE
Confidence            9953       2677899999999777777664  455555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=5.1e-28  Score=180.51  Aligned_cols=196  Identities=20%  Similarity=0.253  Sum_probs=170.8

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..+.++...|    ..+.+++|+.|..+.++|..+                   .+.+.+++||...|+.+.|+|+..  
T Consensus       220 pgi~ald~~~----s~~~ilTGG~d~~av~~d~~s-------------------~q~l~~~~Gh~kki~~v~~~~~~~--  274 (506)
T KOG0289|consen  220 PGITALDIIP----SSSKILTGGEDKTAVLFDKPS-------------------NQILATLKGHTKKITSVKFHKDLD--  274 (506)
T ss_pred             CCeeEEeecC----CCCcceecCCCCceEEEecch-------------------hhhhhhccCcceEEEEEEeccchh--
Confidence            4678888888    578999999999999999998                   788899999999999999999988  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .+++++.|..|++|........   ....                      .+...|+.+..+|.|.||+++++|++..+
T Consensus       275 ~v~~aSad~~i~vws~~~~s~~---~~~~----------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~F  329 (506)
T KOG0289|consen  275 TVITASADEIIRVWSVPLSSEP---TSSR----------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAF  329 (506)
T ss_pred             heeecCCcceEEeeccccccCc---cccc----------------------cccccceeeeeccCCcEEEEecCCceEEE
Confidence            9999999999999997543211   1111                      12224799999999999999999999999


Q ss_pred             EecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643          186 WDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       186 ~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                      .|++++..+.....  ..-.+++.+|+|||..|.+|..||.|+|||+.++..+..|        .+|.++|..++|+.+|
T Consensus       330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F--------pght~~vk~i~FsENG  401 (506)
T KOG0289|consen  330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF--------PGHTGPVKAISFSENG  401 (506)
T ss_pred             EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC--------CCCCCceeEEEeccCc
Confidence            99999988876653  2345899999999999999999999999999999988888        7899999999999999


Q ss_pred             CEEEEEcCcceEEeCC
Q 023643          264 SWLVRVRATNYVILFS  279 (279)
Q Consensus       264 ~~l~~~~~d~~i~~wd  279 (279)
                      -||+++..|+.|++||
T Consensus       402 Y~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  402 YWLATAADDGSVKLWD  417 (506)
T ss_pred             eEEEEEecCCeEEEEE
Confidence            9999999999999998

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.6e-28  Score=190.27  Aligned_cols=208  Identities=20%  Similarity=0.265  Sum_probs=175.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||+++-+|.+.+.  ..+..+.+|...|.+++-..    ++. +++|+.|.++++|-...                    
T Consensus        79 ~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~----~~~-~iSgSWD~TakvW~~~~--------------------  131 (745)
T KOG0301|consen   79 MDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGE----DGT-LISGSWDSTAKVWRIGE--------------------  131 (745)
T ss_pred             ccceEEEEecCCC--CchhhhhccccceeeeecCC----cCc-eEecccccceEEecchh--------------------
Confidence            6889999998776  44888999999999999877    566 99999999999999865                    


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                       ....+++|+..|+++...|.+   .++|||.|.+|++|.-     ......+.+ |..                     
T Consensus       132 -l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~-----~~~l~tf~g-HtD---------------------  180 (745)
T KOG0301|consen  132 -LVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKG-----GTLLKTFSG-HTD---------------------  180 (745)
T ss_pred             -hhcccCCcchheeeeeecCCC---cEEeccCcceeeeccC-----Cchhhhhcc-chh---------------------
Confidence             345689999999999999987   6999999999999983     233444444 322                     


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|+.+++-+++ .++++++||.|++|++ +++.+.++.+|++.++++...+++..++++++|++++||+..  ++.+.+.
T Consensus       181 ~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~  256 (745)
T KOG0301|consen  181 CVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT  256 (745)
T ss_pred             heeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence            26888988754 6889999999999999 799999999999999999988889999999999999999865  7777773


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              -....|+++.+-++|. |++|+.||.|+||.
T Consensus       257 --------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT  286 (745)
T KOG0301|consen  257 --------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT  286 (745)
T ss_pred             --------cCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence                    3334789999888887 78889999999984

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=3.9e-28  Score=178.17  Aligned_cols=229  Identities=16%  Similarity=0.207  Sum_probs=170.3

Q ss_pred             CCceeeeccccc--------------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc
Q 023643            2 CGDSTNWDEDAY--------------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL   67 (279)
Q Consensus         2 dG~v~iw~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   67 (279)
                      .|.|+||++...              ....+.++.+|...=++|+|||.   ....|++|..-+.|++|...++.=    
T Consensus       174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~---~~g~LlsGDc~~~I~lw~~~~g~W----  246 (440)
T KOG0302|consen  174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI---KTGRLLSGDCVKGIHLWEPSTGSW----  246 (440)
T ss_pred             cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc---cccccccCccccceEeeeeccCce----
Confidence            488999995321              23446688899999999999994   455688999999999999987420    


Q ss_pred             ccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC
Q 023643           68 GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH  147 (279)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (279)
                                  ..-...+.+|+..|..|+|+|... ..|+|||.||+|+|||+|..+...+... +. +          
T Consensus       247 ------------~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA-h----------  301 (440)
T KOG0302|consen  247 ------------KVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVST-KA-H----------  301 (440)
T ss_pred             ------------eecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEe-ec-c----------
Confidence                        111234567999999999999877 5999999999999999987544333333 11 1          


Q ss_pred             CCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC---CcEEEEeecCCcceEEEEEcCC-CcEEEEecCCC
Q 023643          148 QHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES---SRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDG  223 (279)
Q Consensus       148 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~  223 (279)
                                 ...|+.|+|+....+|++|+.||+++|||+++   ++++..|+.|..+|+++.|+|. ...|++++.|.
T Consensus       302 -----------~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~  370 (440)
T KOG0302|consen  302 -----------NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN  370 (440)
T ss_pred             -----------CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence                       12379999999888999999999999999986   5788999999999999999995 67889999999


Q ss_pred             eEEEEeCCCCce-----------EEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcce
Q 023643          224 TARIWDCKSGKC-----------IKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNY  274 (279)
Q Consensus       224 ~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~  274 (279)
                      +|.+||+....-           +..++++. ..+..-...+..+.|++. .-+|++.+.||.
T Consensus       371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQL-LFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQL-LFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cEEEEEeeccCChhhhccccccchhcCCcee-EEEecchhHhhhheeccCCCCeEEEecccce
Confidence            999999853211           11111111 001112345778899986 346777777874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.9e-28  Score=180.95  Aligned_cols=225  Identities=17%  Similarity=0.263  Sum_probs=176.1

Q ss_pred             CCCceeeecccccccc--c-----------------eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC
Q 023643            1 MCGDSTNWDEDAYRKS--I-----------------LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC   61 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~--~-----------------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   61 (279)
                      ||-.|.|||++-....  .                 -....+|+..|.+|+|+..   ..+.||+|+.|.+|++||+.+ 
T Consensus       200 mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~---~~nVLaSgsaD~TV~lWD~~~-  275 (463)
T KOG0270|consen  200 MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN---FRNVLASGSADKTVKLWDVDT-  275 (463)
T ss_pred             cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc---cceeEEecCCCceEEEEEcCC-
Confidence            5778999997532100  0                 0113479999999999985   678999999999999999999 


Q ss_pred             CcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccce
Q 023643           62 ISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV  141 (279)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  141 (279)
                                        +++..++..|.++|.++.|+|... .+|++|+.|++|.+.|.|..........+.+      
T Consensus       276 ------------------g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g------  330 (463)
T KOG0270|consen  276 ------------------GKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDG------  330 (463)
T ss_pred             ------------------CCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEecc------
Confidence                              788888999999999999999877 6999999999999999885333333333333      


Q ss_pred             EEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEE
Q 023643          142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVT  218 (279)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~  218 (279)
                                         .|..++|+|... .+++++.||+++-+|+|+. +++.+++.|.+.|.++++++. ..++++
T Consensus       331 -------------------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  331 -------------------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             -------------------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence                               378899998654 6778889999999999985 999999999999999999985 678999


Q ss_pred             ecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          219 GSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       219 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      ++.|+.|++|++...........      .-.-+...|+++.|+- -+|+.|+..+.+++||
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v~~~------~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSVKEH------SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             ccccceEEEEeecCCCCcccccc------cccccceeecccCCCcceEEEecCccceEEEee
Confidence            99999999999876544333211      0111236677788864 4677888888999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=179.72  Aligned_cols=205  Identities=14%  Similarity=0.247  Sum_probs=169.3

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      +.|...+.+++.++    |+.+||+|+.|..|.||+.++                   .+++..+.+|.+.|.+++|-..
T Consensus       199 ~~h~keil~~avS~----Dgkylatgg~d~~v~Iw~~~t-------------------~ehv~~~~ghr~~V~~L~fr~g  255 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS----DGKYLATGGRDRHVQIWDCDT-------------------LEHVKVFKGHRGAVSSLAFRKG  255 (479)
T ss_pred             ccccceeEEEEEcC----CCcEEEecCCCceEEEecCcc-------------------cchhhcccccccceeeeeeecC
Confidence            37899999999999    999999999999999999999                   7888999999999999999877


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS  181 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  181 (279)
                      ..  .|++++.|++|++|+++..   ..+..+.+++.                      .|..|....-++.+-+|+.|.
T Consensus       256 t~--~lys~s~Drsvkvw~~~~~---s~vetlyGHqd----------------------~v~~IdaL~reR~vtVGgrDr  308 (479)
T KOG0299|consen  256 TS--ELYSASADRSVKVWSIDQL---SYVETLYGHQD----------------------GVLGIDALSRERCVTVGGRDR  308 (479)
T ss_pred             cc--ceeeeecCCceEEEehhHh---HHHHHHhCCcc----------------------ceeeechhcccceEEeccccc
Confidence            76  8999999999999998643   22233333332                      366777666677777788999


Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc----cccCcceeeeEE
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK----QLKGVISCVSCI  257 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~  257 (279)
                      ++++|++. .+....+.++.+.+-|++|- +...+++||.+|.|.+|++...+++.+.+.....    ....+..+|+++
T Consensus       309 T~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl  386 (479)
T KOG0299|consen  309 TVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL  386 (479)
T ss_pred             eeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence            99999994 45556688899999999996 4578999999999999999999988877543211    012233599999


Q ss_pred             EEcCCCCEEEEEcCcceEEeC
Q 023643          258 TLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       258 ~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +..|...++|+|+.+|.|++|
T Consensus       387 a~i~~sdL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  387 AVIPGSDLLASGSWSGCVRLW  407 (479)
T ss_pred             EecccCceEEecCCCCceEEE
Confidence            999999999999999999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1e-27  Score=196.88  Aligned_cols=235  Identities=17%  Similarity=0.207  Sum_probs=176.1

Q ss_pred             cccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      +...|.++..+|    ++..+|+|+  .||.++||+...-.....      ..+..+ .+.+..+..|.+.|+|+.|+|+
T Consensus        12 ~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~------~~~~~l-~k~l~~m~~h~~sv~CVR~S~d   80 (942)
T KOG0973|consen   12 NEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKE------EKNENL-PKHLCTMDDHDGSVNCVRFSPD   80 (942)
T ss_pred             CCeeEEEEEecC----CceeEecCCccccccceeeccccccchhh------hhhccc-chhheeeccccCceeEEEECCC
Confidence            456699999999    999999999  999999999875211100      001111 5667788889999999999999


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeee-ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINL-QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD  180 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  180 (279)
                      |+  +||+|+.|+.|.||..... ........ .+.+...-|...       .....|...|..++|+|++.+|++++.|
T Consensus        81 G~--~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~-------~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   81 GS--YLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVV-------SILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             CC--eEeeccCcceEEEeeeccc-CCcccccccccccccceeeEE-------EEEecCCCccceeccCCCccEEEEeccc
Confidence            99  9999999999999997631 11111111 111111111100       0011234468999999999999999999


Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc-----------------
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK-----------------  243 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----------------  243 (279)
                      ++|.+||.++.+.+..+++|.+.|-.+.|.|-|+||++-+.|++|+||++.+-...+.+..+.                 
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD  230 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence            999999999999999999999999999999999999999999999999976544444443221                 


Q ss_pred             ---------------------------cccccCcceeeeEEEEcCC-----CC------------EEEEEcCcceEEeCC
Q 023643          244 ---------------------------DKQLKGVISCVSCITLDAS-----ES------------WLVRVRATNYVILFS  279 (279)
Q Consensus       244 ---------------------------~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~d~~i~~wd  279 (279)
                                                 ...+.+|..++.+++|+|.     ..            .+|+|+.|++|.||.
T Consensus       231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence                                       1256799999999999872     11            678999999999994

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.9e-27  Score=168.12  Aligned_cols=232  Identities=18%  Similarity=0.180  Sum_probs=175.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.+++|+.....  ....+ .|..++.+++|.+     ...+++|+.||.|+.+|++++                    
T Consensus        34 DgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d-----~~~~~~G~~dg~vr~~Dln~~--------------------   85 (323)
T KOG1036|consen   34 DGSLRLYDVPANS--LKLKF-KHGAPLLDCAFAD-----ESTIVTGGLDGQVRRYDLNTG--------------------   85 (323)
T ss_pred             cCcEEEEeccchh--hhhhe-ecCCceeeeeccC-----CceEEEeccCceEEEEEecCC--------------------
Confidence            8999999988763  23333 4889999999997     467899999999999999973                    


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc------Ccceeee----------ccCcccceEEee
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE------SKVPINL----------QGNHVKPVLDLV  145 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~----------~~~~~~~~~~~~  145 (279)
                      ....+..|..+|.+|.+++...  .+++||.|++|++||.+....      .+.+..+          .......++++.
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             cceeeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence            2345567999999999998776  899999999999999884211      1111111          111222333443


Q ss_pred             cCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC----cEEEEeecCCc---------ceEEEEEcCC
Q 023643          146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHSD---------YLHCIVARNS  212 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~---------~i~~i~~~~~  212 (279)
                      +...........-...++|+++-|++.-+++++-||.|.+=.++..    +....|+.|..         +|.+|+|+|-
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            3322222222233346899999998888999999999988766655    45566777753         7899999999


Q ss_pred             CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          213 TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       213 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ...|+||+.||.|.+||+.+.+.+..+        ......|..++|+.+|..||+++.
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~--------~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQL--------AKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhc--------cCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999998888        455667999999999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.5e-28  Score=173.25  Aligned_cols=236  Identities=19%  Similarity=0.238  Sum_probs=186.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC------CCC------cccccc
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP------SCI------SKLPLG   68 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~~------~~~~~~   68 (279)
                      +|.+.+||.++.+  .++..+.+|.+.|++++|++    .+.++++++.|++-.||...      ...      .+...+
T Consensus       168 ADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~----s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  168 ADHTARIWSLESG--ACLATYTGHTGSVNSIKFHN----SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             cccceeEEeeccc--cceeeecccccceeeEEecc----ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            5889999999988  56899999999999999999    89999999999999999832      110      000111


Q ss_pred             cCCc---------ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCccc
Q 023643           69 LSNS---------KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK  139 (279)
Q Consensus        69 ~~~~---------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  139 (279)
                      -++.         ..+......|+..+.+|.+.|.+..|...++  .+++++.|.+-.+||++++   .....+.++.. 
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~--Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~-  315 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ--QMVTASWDRTANLWDVETG---EVVNILTGHDS-  315 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc--eeeeeeccccceeeeeccC---ceeccccCcch-
Confidence            1110         1111111567788999999999999999998  9999999999999998754   34444444332 


Q ss_pred             ceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEE
Q 023643          140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVT  218 (279)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~  218 (279)
                                           ..+.++-+|..+++++.+.|.+.++||.+.. ..+..|++|...|+++.|..+ ..+++
T Consensus       316 ---------------------ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVS  373 (481)
T KOG0300|consen  316 ---------------------ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVS  373 (481)
T ss_pred             ---------------------hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceee
Confidence                                 2467778899999999999999999999853 567789999999999999754 67899


Q ss_pred             ecCCCeEEEEeCCCCc-eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          219 GSEDGTARIWDCKSGK-CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       219 ~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |+.|.+|+|||+++.+ ++.++.         ...+++.++.+..++.|+.--.+..|++||
T Consensus       374 gSDDrTvKvWdLrNMRsplATIR---------tdS~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATIR---------TDSPANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             cCCCceEEEeeeccccCcceeee---------cCCccceeEeecCCceEEeccCCceEEEEe
Confidence            9999999999999864 566663         345788889998888888888888999987

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=9.3e-28  Score=171.14  Aligned_cols=222  Identities=18%  Similarity=0.267  Sum_probs=169.6

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee-ccc---cccccCCccCeEE
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG-IEP---DGFLHGHDGPAYD   95 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~h~~~v~~   95 (279)
                      ....|.+.|.++...+.   .++++++|+.||.|.+||++.......        ..+.. ..+   ...-.+|.-.|.+
T Consensus        38 ~~r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~--------s~li~k~~c~v~~~h~~~Hky~iss  106 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEA--------SGLIAKHKCIVAKQHENGHKYAISS  106 (397)
T ss_pred             eeccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhh--------ccceeheeeeccccCCccceeeeee
Confidence            34578999999999995   899999999999999999986431110        00000 111   1122358889999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC---CC
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ---GG  172 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  172 (279)
                      +.|.|-.. -+|.+++.|.++++||.++.+.. ..+.+.+                         .|.+-+++|-   .-
T Consensus       107 ~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a-~~F~me~-------------------------~VYshamSp~a~sHc  159 (397)
T KOG4283|consen  107 AIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEA-VDFKMEG-------------------------KVYSHAMSPMAMSHC  159 (397)
T ss_pred             eEEeeecC-ceeecccccceEEEeecccceee-EEeecCc-------------------------eeehhhcChhhhcce
Confidence            99999766 38999999999999998754221 1111111                         2566677773   33


Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCCC-ceEEEecCCcc------
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSG-KCIKVIDPVKD------  244 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~------  244 (279)
                      ++++|..+-.|++.|+.+|..-+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. -+...+..+..      
T Consensus       160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~  239 (397)
T KOG4283|consen  160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL  239 (397)
T ss_pred             EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc
Confidence            7888899999999999999999999999999999999997554 789999999999999864 45555543321      


Q ss_pred             ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          245 KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.-..|.+.|.+++|..++.++++.+.|..+++|.
T Consensus       240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             cccccccceeeeeeecccchhhhhccCccceEEee
Confidence            12357889999999999999999999999999995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.3e-28  Score=179.83  Aligned_cols=222  Identities=15%  Similarity=0.179  Sum_probs=171.9

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+.+|.+.|.+++=+|.   .-..+|+|+.||.|+|||+.+                   ..+..+++.|.+.|..|+
T Consensus        59 v~~L~gHrdGV~~lakhp~---~ls~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPN---KLSTVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGIC  116 (433)
T ss_pred             hhhccccccccchhhcCcc---hhhhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEE
Confidence            4567899999999999993   447899999999999999998                   678899999999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC----------------cccceEEeecCCCCCccccCCC-CC
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN----------------HVKPVLDLVNHQHKGPWGALSP-VP  160 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~  160 (279)
                      +..  .  .+++++.|.+|+.|.++-.    ....+.+.                ..+...++.......|...+.. ..
T Consensus       117 v~~--~--~~~tvgdDKtvK~wk~~~~----p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D  188 (433)
T KOG0268|consen  117 VTQ--T--SFFTVGDDKTVKQWKIDGP----PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD  188 (433)
T ss_pred             ecc--c--ceEEecCCcceeeeeccCC----cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC
Confidence            987  3  7999999999999996531    11111110                0001111222222233333322 24


Q ss_pred             CceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc-eEEE
Q 023643          161 ENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK-CIKV  238 (279)
Q Consensus       161 ~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~  238 (279)
                      .|.++.|+|... .|+++..|+.|.+||++++.++.... -...-..|+|+|..-.+++|++|..++.||++..+ ++..
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v  267 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV  267 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchh
Confidence            588999999665 67777799999999999999888664 33455789999988889999999999999998753 4455


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .        .+|.+.|..+.|+|.|+-+++||.|.+|+||
T Consensus       268 ~--------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf  299 (433)
T KOG0268|consen  268 H--------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF  299 (433)
T ss_pred             h--------cccceeEEEeccCCCcchhccccccceEEEe
Confidence            4        7999999999999999999999999999997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.6e-27  Score=167.42  Aligned_cols=210  Identities=16%  Similarity=0.205  Sum_probs=155.2

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      ....+.|.+|+|||.   ...++++++.||+||+|+++....                ..+ +....|.++|.+++|+.+
T Consensus        24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~----------------~~~-ka~~~~~~PvL~v~Wsdd   83 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQ----------------LVP-KAQQSHDGPVLDVCWSDD   83 (347)
T ss_pred             CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCc----------------ccc-hhhhccCCCeEEEEEccC
Confidence            445688999999993   667788999999999999986311                111 445679999999999999


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC--eEEEecC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG--AIFSAAG  179 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~  179 (279)
                      +.  .+++|+.|+.+++||+...+..    .. +.|                     ..+|.++.|-+...  .|++|+.
T Consensus        84 gs--kVf~g~~Dk~~k~wDL~S~Q~~----~v-~~H---------------------d~pvkt~~wv~~~~~~cl~TGSW  135 (347)
T KOG0647|consen   84 GS--KVFSGGCDKQAKLWDLASGQVS----QV-AAH---------------------DAPVKTCHWVPGMNYQCLVTGSW  135 (347)
T ss_pred             Cc--eEEeeccCCceEEEEccCCCee----ee-eec---------------------ccceeEEEEecCCCcceeEeccc
Confidence            98  9999999999999998754211    11 111                     12367888876555  8999999


Q ss_pred             CCeEEEEecCCCcEEEEee-------------------------------------cCC----cceEEEEEcCCCcEEEE
Q 023643          180 DSCAYCWDVESSRIKMVFK-------------------------------------GHS----DYLHCIVARNSTNQIVT  218 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~-------------------------------------~~~----~~i~~i~~~~~~~~l~~  218 (279)
                      |.+|++||+++..++.++.                                     .+.    -.++|++..++....+.
T Consensus       136 DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al  215 (347)
T KOG0647|consen  136 DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL  215 (347)
T ss_pred             ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence            9999999999876655431                                     111    24678888887777788


Q ss_pred             ecCCCeEEEEeCCCC--ceEEEecCCccccc-cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          219 GSEDGTARIWDCKSG--KCIKVIDPVKDKQL-KGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       219 ~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |+.+|.+.|..+..+  +.-..++.|..... .+.--.|++++|+|.-..|+|++.||+..+||
T Consensus       216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            888998888888776  33344443332111 11134689999999999999999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.8e-29  Score=197.20  Aligned_cols=198  Identities=17%  Similarity=0.254  Sum_probs=175.2

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+.+|..+|.++.|++    ...+|++|+.+|+|++||++.                   ...++++.+|...+.++.
T Consensus        63 i~S~~~hespIeSl~f~~----~E~LlaagsasgtiK~wDlee-------------------Ak~vrtLtgh~~~~~sv~  119 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDT----SERLLAAGSASGTIKVWDLEE-------------------AKIVRTLTGHLLNITSVD  119 (825)
T ss_pred             hheeeccCCcceeeecCc----chhhhcccccCCceeeeehhh-------------------hhhhhhhhccccCcceee
Confidence            446789999999999999    889999999999999999998                   677889999999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |+|-+.  ++++|+.|+-+++||++.   ..+...+.+ +..                     .+.++.|+|+|++++++
T Consensus       120 f~P~~~--~~a~gStdtd~~iwD~Rk---~Gc~~~~~s-~~~---------------------vv~~l~lsP~Gr~v~~g  172 (825)
T KOG0267|consen  120 FHPYGE--FFASGSTDTDLKIWDIRK---KGCSHTYKS-HTR---------------------VVDVLRLSPDGRWVASG  172 (825)
T ss_pred             eccceE--Eeccccccccceehhhhc---cCceeeecC-Ccc---------------------eeEEEeecCCCceeecc
Confidence            999998  999999999999999763   244444444 222                     26899999999999999


Q ss_pred             cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      +.|..+++||+..|+....|+.|.+.+..+.|+|..-++++|+.|+++++||+++-+.+...        ......|.+.
T Consensus       173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~--------~~~~~~v~~~  244 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG--------KPETDGVRSL  244 (825)
T ss_pred             CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc--------CCccCCceee
Confidence            99999999999999999999999999999999999999999999999999999988877776        3446789999


Q ss_pred             EEcCCCCEEEEEcCcc
Q 023643          258 TLDASESWLVRVRATN  273 (279)
Q Consensus       258 ~~~~~~~~l~~~~~d~  273 (279)
                      +|+|++..+++|....
T Consensus       245 ~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  245 AFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eecCCceeeecCchhh
Confidence            9999999999886543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.9e-28  Score=174.99  Aligned_cols=230  Identities=20%  Similarity=0.271  Sum_probs=179.1

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      ...+.+.+|.+.|+.++-..    ....+.+++.|.+.+||.+++                   +.++..+.+|.+.|++
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Es-------------------g~CL~~Y~GH~GSVNs  195 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLES-------------------GACLATYTGHTGSVNS  195 (481)
T ss_pred             eehhhhcccccceeeehhhc----CCcceeecccccceeEEeecc-------------------ccceeeecccccceee
Confidence            55678899999999999887    667999999999999999999                   7888999999999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCC----c-------cCcceeeeccCcccceE-EeecCCCC--Ccc-ccCCCCC
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEF----T-------ESKVPINLQGNHVKPVL-DLVNHQHK--GPW-GALSPVP  160 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~----~-------~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-~~~~~~~  160 (279)
                      +.|++.+.  ++++++.|++-.||...-.    .       ..+........+....- +.....+.  .|. ....+..
T Consensus       196 ikfh~s~~--L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~  273 (481)
T KOG0300|consen  196 IKFHNSGL--LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA  273 (481)
T ss_pred             EEeccccc--eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence            99999998  9999999999999983210    0       00000000000000000 00000000  011 1123445


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKVI  239 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~  239 (279)
                      .|.+..|-..++.+++++.|.+-.+||+++++++..+.+|...++.++-+|..+++++.+.|.+.++||++.. +.+..+
T Consensus       274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  274 VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence            5788889999999999999999999999999999999999999999999999999999999999999999842 344455


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .+|...|+++.|..+. .+++|+.|.+|++||
T Consensus       354 --------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  354 --------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWD  384 (481)
T ss_pred             --------cccccceeEEEEecCC-ceeecCCCceEEEee
Confidence                    7999999999998765 489999999999997

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4e-28  Score=192.77  Aligned_cols=220  Identities=18%  Similarity=0.238  Sum_probs=174.5

Q ss_pred             CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.|.+||+.. .+.+.+..+..|...+.++.|++.   ..++|++|+.||+|++||++.                   .
T Consensus       109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~-------------------~  166 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST---EPNILISGSQDGTVKCWDLRS-------------------K  166 (839)
T ss_pred             CCcEEEEecCccccchhhhHhhhhccceeeeeeccC---CccEEEecCCCceEEEEeeec-------------------c
Confidence            58999999876 233556788999999999999995   889999999999999999998                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +...++.+....|..+.|+|... ++|+++...|.+++||++....  ....+.                      +|.+
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~-~~F~s~~dsG~lqlWDlRqp~r--~~~k~~----------------------AH~G  221 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYG-NKFASIHDSGYLQLWDLRQPDR--CEKKLT----------------------AHNG  221 (839)
T ss_pred             cccccccccchhhhceeeccCCC-ceEEEecCCceEEEeeccCchh--HHHHhh----------------------cccC
Confidence            55677788888999999999765 6999999999999999975321  112221                      2223


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCC-cEEEEec--CCCeEEEEeCCCCc-e
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNST-NQIVTGS--EDGTARIWDCKSGK-C  235 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~-~~l~~~~--~d~~i~vwd~~~~~-~  235 (279)
                      .|.|+.|+|++.+||+|+.|+.|+|||..+.+......- ...+|.+++|-|.. ..|++++  .|-.|+|||++..- +
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            478999999999999999999999999987654433332 34789999999975 4567665  47889999998653 3


Q ss_pred             EEEecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEE
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVI  276 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  276 (279)
                      ..++        ..|+..++.++|.. |...|.+++.||+|.
T Consensus       302 ~~t~--------~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  302 YATF--------LEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ceee--------eccCccccceeccCCCceeeEeecCccHHH
Confidence            3444        68899999999976 567788999999764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=5.3e-28  Score=184.21  Aligned_cols=214  Identities=15%  Similarity=0.170  Sum_probs=163.8

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ...++|...+++-+|+|.   +...+++++.||++|||+++.......          ++..   ....+..-+++.++|
T Consensus       262 ~nTKGHia~lt~g~whP~---~k~~FlT~s~DgtlRiWdv~~~k~q~q----------Vik~---k~~~g~Rv~~tsC~~  325 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPD---NKEEFLTCSYDGTLRIWDVNNTKSQLQ----------VIKT---KPAGGKRVPVTSCAW  325 (641)
T ss_pred             hccCCceeeeeccccccC---cccceEEecCCCcEEEEecCCchhhee----------EEee---ccCCCcccCceeeec
Confidence            345789999999999995   778899999999999999987532211          1101   111234567899999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      +|+++  .||+|..||+|.+|+..... ......+...|..                   ...|+||+|+++|++|++-+
T Consensus       326 nrdg~--~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~-------------------g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  326 NRDGK--LIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLP-------------------GQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             CCCcc--hhhhcccCCceeeeecCCcc-cccceEeeeccCC-------------------CCceeEEEeccccchhhhcc
Confidence            99998  99999999999999975321 1111122211111                   11489999999999999999


Q ss_pred             CCCeEEEEecCCC-cEEEEeecC--CcceEEEEEcCCCcEEEEec------CCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          179 GDSCAYCWDVESS-RIKMVFKGH--SDYLHCIVARNSTNQIVTGS------EDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       179 ~d~~i~i~d~~~~-~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                      .|+++++||+++. +++....+-  .-+-+.++|+|+.++|++|.      ..|.+.+||..+-+.++.+.        -
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~--------i  455 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID--------I  455 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec--------C
Confidence            9999999999974 566655442  23457889999999999986      36789999999999999984        4


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ....|..+.|+|.-+.|.+|+.||++++|
T Consensus       456 ~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  456 STASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CCceEEEEeecchhhheeeecCCCceEEE
Confidence            46788999999998889999999999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-28  Score=194.83  Aligned_cols=200  Identities=18%  Similarity=0.311  Sum_probs=158.0

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      +..+.|...   +.++||+++..|.|.+||++....                ...+..|..|+..+++++|++... ++|
T Consensus        90 ~~DVkW~~~---~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep-~il  149 (839)
T KOG0269|consen   90 AADVKWGQL---YSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEP-NIL  149 (839)
T ss_pred             hhhcccccc---hhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCc-cEE
Confidence            445677753   789999999999999999986310                344567889999999999999887 699


Q ss_pred             EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEE
Q 023643          108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~  186 (279)
                      ++||.||+|++||++.........   ++.                      ..|+.+.|+| .+..++++...|.+.+|
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~t~~---~nS----------------------ESiRDV~fsp~~~~~F~s~~dsG~lqlW  204 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKSTFR---SNS----------------------ESIRDVKFSPGYGNKFASIHDSGYLQLW  204 (839)
T ss_pred             EecCCCceEEEEeeeccccccccc---ccc----------------------hhhhceeeccCCCceEEEecCCceEEEe
Confidence            999999999999998643322222   211                      1378999998 45688999999999999


Q ss_pred             ecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-
Q 023643          187 DVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-  264 (279)
Q Consensus       187 d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  264 (279)
                      |++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||..+++......       .....+|.+++|-|... 
T Consensus       205 DlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-------InTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  205 DLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-------INTIAPVGRVKWRPARSY  277 (839)
T ss_pred             eccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-------EeecceeeeeeeccCccc
Confidence            99975 5667888999999999999999999999999999999998654332221       12346899999999765 


Q ss_pred             EEEEEc--CcceEEeCC
Q 023643          265 WLVRVR--ATNYVILFS  279 (279)
Q Consensus       265 ~l~~~~--~d~~i~~wd  279 (279)
                      .||+++  .|-.|+|||
T Consensus       278 hLAtcsmv~dtsV~VWD  294 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWD  294 (839)
T ss_pred             hhhhhhccccceEEEEe
Confidence            466665  388999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=185.41  Aligned_cols=252  Identities=15%  Similarity=0.249  Sum_probs=192.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ++|+|.++|++..  +.+.+++...++|++++|..    ||+ ++|+|+..|.+-+||++.                   
T Consensus       222 ~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrt----DG~p~las~~~~G~m~~wDLe~-------------------  276 (910)
T KOG1539|consen  222 ENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRT----DGNPLLASGRSNGDMAFWDLEK-------------------  276 (910)
T ss_pred             cCceEEEEEcccC--cEEEEEEccccceeEEEecc----CCCeeEEeccCCceEEEEEcCC-------------------
Confidence            5899999999987  45778885569999999998    555 677788889999999997                   


Q ss_pred             cccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe--------------
Q 023643           80 IEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL--------------  144 (279)
Q Consensus        80 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--------------  144 (279)
                      .+.+..++ .|.+.|....|.|..+  .+++++.|.++++|=.++...........+.|..|-.++              
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~ep--Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~  354 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEP--VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAK  354 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCc--eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecc
Confidence            34444454 6989999999999988  999999999999887663322222222211121111110              


Q ss_pred             -----------------------------------------------ec-CCCCCcccc---------------------
Q 023643          145 -----------------------------------------------VN-HQHKGPWGA---------------------  155 (279)
Q Consensus       145 -----------------------------------------------~~-~~~~~~~~~---------------------  155 (279)
                                                                     .. ......|+-                     
T Consensus       355 ~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~  434 (910)
T KOG1539|consen  355 QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS  434 (910)
T ss_pred             cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc
Confidence                                                           00 000000000                     


Q ss_pred             ----CCC------CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCC
Q 023643          156 ----LSP------VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       156 ----~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                          +.+      ...+++++.++.|+..+.|+..|.|-+|++++|....+|   ..|.++|+.++...-++.+++++.+
T Consensus       435 G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~  514 (910)
T KOG1539|consen  435 GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD  514 (910)
T ss_pred             ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCc
Confidence                111      246789999999999999999999999999999988888   5799999999999889999999999


Q ss_pred             CeEEEEeCCCCceEEEecCCcc---------------------------------ccccCcceeeeEEEEcCCCCEEEEE
Q 023643          223 GTARIWDCKSGKCIKVIDPVKD---------------------------------KQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      |.+++||.....++..+.....                                 ..+.+|...|+.++|||||++|+++
T Consensus       515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa  594 (910)
T KOG1539|consen  515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA  594 (910)
T ss_pred             ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence            9999999988776655543221                                 2567899999999999999999999


Q ss_pred             cCcceEEeCC
Q 023643          270 RATNYVILFS  279 (279)
Q Consensus       270 ~~d~~i~~wd  279 (279)
                      +.|++|++||
T Consensus       595 smD~tIr~wD  604 (910)
T KOG1539|consen  595 SMDSTIRTWD  604 (910)
T ss_pred             ecCCcEEEEe
Confidence            9999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.9e-29  Score=197.87  Aligned_cols=202  Identities=21%  Similarity=0.308  Sum_probs=179.3

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      .+..|...|.++..-.    .++.+++|+.|..+-+|.+..                   ...+..+.+|+.+|.++.|+
T Consensus        23 ~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~k-------------------p~~i~S~~~hespIeSl~f~   79 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGK-------------------PNAITSLTGHESPIESLTFD   79 (825)
T ss_pred             hhhhhhhhhceeeeec----cceeeccCCCceeeccccccC-------------------CchhheeeccCCcceeeecC
Confidence            3446788888888855    788999999999999999987                   56667789999999999999


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      +...  +|++|+.+|+|++||++..   +....+.++..                      .+.++.|+|-+.+.+.|+.
T Consensus        80 ~~E~--LlaagsasgtiK~wDleeA---k~vrtLtgh~~----------------------~~~sv~f~P~~~~~a~gSt  132 (825)
T KOG0267|consen   80 TSER--LLAAGSASGTIKVWDLEEA---KIVRTLTGHLL----------------------NITSVDFHPYGEFFASGST  132 (825)
T ss_pred             cchh--hhcccccCCceeeeehhhh---hhhhhhhcccc----------------------CcceeeeccceEEeccccc
Confidence            9987  9999999999999998643   33444444332                      2678999999999999999


Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      |+.+++||++..-+.+.+++|...+..++|+|+|++++.|+.|.+++|||+..|+....|        ..|...+..+.|
T Consensus       133 dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef--------~~~e~~v~sle~  204 (825)
T KOG0267|consen  133 DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF--------KSHEGKVQSLEF  204 (825)
T ss_pred             cccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc--------cccccccccccc
Confidence            999999999988899999999999999999999999999999999999999999999998        788899999999


Q ss_pred             cCCCCEEEEEcCcceEEeCC
Q 023643          260 DASESWLVRVRATNYVILFS  279 (279)
Q Consensus       260 ~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +|..-++++|+.|+++++||
T Consensus       205 hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  205 HPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             CchhhhhccCCCCceeeeec
Confidence            99999999999999999997

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=189.02  Aligned_cols=229  Identities=20%  Similarity=0.238  Sum_probs=189.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|++|||++...+.  +...+.|..+|.|+.|+-. ....++||+++.|..|+|||+...                  ..
T Consensus       480 ~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p-~~~~kLLASasrdRlIHV~Dv~rn------------------y~  538 (1080)
T KOG1408|consen  480 GGNLRVYDLQELEY--TCFMEAHESEILCLEYSFP-VLTNKLLASASRDRLIHVYDVKRN------------------YD  538 (1080)
T ss_pred             cCceEEEEehhhhh--hhheecccceeEEEeecCc-hhhhHhhhhccCCceEEEEecccc------------------cc
Confidence            48999999988754  5567889999999999852 124578999999999999999875                  77


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ++.++.+|...|+++.|...+-+..+++++.|..|.+ +........ ......++...                  ...
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g-~~f~r~t~t~~------------------ktT  598 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG-RLFPRHTQTLS------------------KTT  598 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc-eeccccccccc------------------cce
Confidence            8899999999999999998875458999999988764 332111111 11111111110                  113


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ++.++..|..+++++++.|..|+|||+.+++.++.|++   |++..-.+...|.|.||++.+.|.++.++|.-+|+++.+
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            68899999999999999999999999999999999985   667788899999999999999999999999999999999


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .        .+|...|+++.|.+|-++|++.+.||.|.+|.
T Consensus       679 m--------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  679 M--------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             h--------cCcchheeeeeecccchhheeecCCceEEEEE
Confidence            8        79999999999999999999999999999993

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-26  Score=165.94  Aligned_cols=253  Identities=14%  Similarity=0.134  Sum_probs=176.4

Q ss_pred             CCCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .|++|+|||.+.  +...+....+.|.+.|..+.|.+.  .-|+.+|+++.|+++.||.-........        .  .
T Consensus        33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP--EfGqvvA~cS~Drtv~iWEE~~~~~~~~--------~--~  100 (361)
T KOG2445|consen   33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP--EFGQVVATCSYDRTVSIWEEQEKSEEAH--------G--R  100 (361)
T ss_pred             CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc--cccceEEEEecCCceeeeeecccccccc--------c--c
Confidence            489999999543  334566788999999999999653  3789999999999999998742111000        0  0


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      ......++......|+.++|.|...+-.|++++.||.+|||+.-+...... -.+. +..+.+..   +       .-.+
T Consensus       101 ~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq-~Ei~~~~~---p-------p~~~  168 (361)
T KOG2445|consen  101 RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQ-HEIQNVID---P-------PGKN  168 (361)
T ss_pred             eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhh-hhhhhccC---C-------cccc
Confidence            023445666778899999999987777999999999999999643211100 0000 00000000   0       0001


Q ss_pred             CCCceeEEEcCC---CCeEEEecCC-----CeEEEEecCCC----cEEEEeecCCcceEEEEEcCC-C---cEEEEecCC
Q 023643          159 VPENNAIAVDPQ---GGAIFSAAGD-----SCAYCWDVESS----RIKMVFKGHSDYLHCIVARNS-T---NQIVTGSED  222 (279)
Q Consensus       159 ~~~i~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~-~---~~l~~~~~d  222 (279)
                      .....|+.|+|.   .++|++|+.+     +.++||....+    ..+.++.+|..+|++++|.|+ |   ..|++++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            113579999984   4578888765     47888876543    345567789999999999995 3   469999999


Q ss_pred             CeEEEEeCCCC------------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          223 GTARIWDCKSG------------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       223 ~~i~vwd~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      | |+||.++..            .....++.+....+.+|+..|+.+.|+-.|..|++.+.||.|++|
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            9 999998731            111122222223458999999999999999999999999999999

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-28  Score=168.98  Aligned_cols=209  Identities=18%  Similarity=0.227  Sum_probs=161.0

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      ..|.+.|..+...-    .|.+|||+++|++|+|+.++....                ..++.++.+|++||..++|...
T Consensus         8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~----------------s~ll~~L~Gh~GPVwqv~wahP   67 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQ----------------SKLLAELTGHSGPVWKVAWAHP   67 (299)
T ss_pred             hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCC----------------ceeeeEecCCCCCeeEEeeccc
Confidence            45777777777666    789999999999999999987531                2567889999999999999763


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC--CeEEEecC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG--GAIFSAAG  179 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~  179 (279)
                      ..+.+|++++.||.|.||.-... .-.......                      .+...|++++|.|.+  -.|++++.
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~----------------------~h~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHA----------------------AHSASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCC-chhhhhhhh----------------------hhcccceeecccccccceEEEEeeC
Confidence            33349999999999999995432 111111111                      122348999999854  48899999


Q ss_pred             CCeEEEEecCCC---cEEEEeecCCcceEEEEEcCC---C-----------cEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          180 DSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNS---T-----------NQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       180 d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      ||.|.+.+.++.   ........|.-.|++++|.|.   |           +.|++|+.|+.|+||+..+++-+..-   
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---  201 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---  201 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---
Confidence            999999988754   233455679999999999985   4           57999999999999999886322111   


Q ss_pred             ccccccCcceeeeEEEEcCCC----CEEEEEcCcceEEeCC
Q 023643          243 KDKQLKGVISCVSCITLDASE----SWLVRVRATNYVILFS  279 (279)
Q Consensus       243 ~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd  279 (279)
                         .+.+|...|..++|.|.-    .+||+++.||++.||.
T Consensus       202 ---~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  202 ---TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             ---hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence               137999999999999963    5899999999999983

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.9e-25  Score=152.46  Aligned_cols=237  Identities=14%  Similarity=0.181  Sum_probs=165.6

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ....|.+++|+|    .|.+.|+|++..+.+|.....-.....-........    .-..+.-+.|.+.|.|.+|+|.++
T Consensus        31 dsqairav~fhp----~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp----~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   31 DSQAIRAVAFHP----AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP----SVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             chhheeeEEecC----CCceEEeccCCceEEEEccccccCcccccccccCCC----eEEeeeccccCccEEEEEecCccC
Confidence            567899999999    899999999999999876643211110000000000    011123346899999999999998


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCc----ceeeeccCcccceEEeecCCCCCccc-----------------------cC
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESK----VPINLQGNHVKPVLDLVNHQHKGPWG-----------------------AL  156 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~  156 (279)
                        ++++|+.|.+|++..++......    ..+.+.......+..+..+...+.+.                       ..
T Consensus       103 --liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  103 --LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             --eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence              99999999999998876432211    11122111111111111111111110                       11


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--C-----CcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--H-----SDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      .+.+.|.++ ++=++.++++|+.|.+|++||++-..+++++..  |     .+.|.+++..|.|++|++|-.|...-+||
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            222334443 223567899999999999999999888887642  2     35789999999999999999999999999


Q ss_pred             CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++-++.++.+        ..|...|.++.|+|...||++++.|..|++=|
T Consensus       260 irg~r~iq~f--------~phsadir~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  260 IRGGRMIQRF--------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             eeCCceeeee--------CCCccceeEEEeCCCceEEEEecccceEEEee
Confidence            9999999999        67888999999999999999999999998743

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-27  Score=178.54  Aligned_cols=211  Identities=17%  Similarity=0.299  Sum_probs=169.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|.+++|.+.++.  .+..+..|-..|+++.|+-    |+.+|++|+.||.|.+|.+..-.....        +.  ...
T Consensus       102 ~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~----dgs~iiTgskDg~V~vW~l~~lv~a~~--------~~--~~~  165 (476)
T KOG0646|consen  102 SGNLYLWELSSGI--LLNVLSAHYQSITCLKFSD----DGSHIITGSKDGAVLVWLLTDLVSADN--------DH--SVK  165 (476)
T ss_pred             cCcEEEEEecccc--HHHHHHhhccceeEEEEeC----CCcEEEecCCCccEEEEEEEeeccccc--------CC--Ccc
Confidence            4789999999985  4777889999999999999    999999999999999999865211100        00  157


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      +.+.+..|.-+|+++...+.+...+++|+|.|.++++||+..+   .......-.                       ..
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~fp-----------------------~s  219 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITFP-----------------------SS  219 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEecC-----------------------Cc
Confidence            8889999999999999888755569999999999999998653   221111110                       13


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCC----------------cEEEEeecCCc--ceEEEEEcCCCcEEEEecCCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS----------------RIKMVFKGHSD--YLHCIVARNSTNQIVTGSEDG  223 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~  223 (279)
                      +.+++.+|.+..+++|+.+|.|.+.++...                ..+..+.+|.+  .|+|++.+-||..|++|+.||
T Consensus       220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg  299 (476)
T KOG0646|consen  220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG  299 (476)
T ss_pred             ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence            789999999999999999999998877532                34556778888  999999999999999999999


Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      .++|||+.+.++++++.        ...++|+.+.+.|-
T Consensus       300 ~VcvWdi~S~Q~iRtl~--------~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  300 KVCVWDIYSKQCIRTLQ--------TSKGPVTNLQINPL  330 (476)
T ss_pred             CEEEEecchHHHHHHHh--------hhccccceeEeecc
Confidence            99999999999998873        34567777777553

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=5.1e-27  Score=172.35  Aligned_cols=223  Identities=17%  Similarity=0.205  Sum_probs=167.1

Q ss_pred             eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643           21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG  100 (279)
Q Consensus        21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  100 (279)
                      ...|.+.+..+.-++.  .+..+.|+-+..|.|+||++........   .+.........+++.++.+|.+.-++|+|+|
T Consensus       147 ~i~h~g~~NRvr~~~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~---~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRL--GNEVLCASWSENGRVQVWDLAPHLNALS---EPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP  221 (440)
T ss_pred             ccccccccceeeeccc--CCcceeeeecccCcEEEEEchhhhhhhc---CccccccccccCceEEecccCccceeeeccc
Confidence            3457788888887772  1446677778899999999975321110   0000111122688899999999999999999


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAG  179 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  179 (279)
                      -.. ..|+||..-+.|++|...++.=......+.+                      |...|..+.|+|... .|++++.
T Consensus       222 ~~~-g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g----------------------H~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  222 IKT-GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG----------------------HTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             ccc-cccccCccccceEeeeeccCceeecCccccc----------------------cccchhhhccCCccCceEEeeec
Confidence            544 2689998899999999765211111112222                      233478999999665 7899999


Q ss_pred             CCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC---CceEEEecCCccccccCcceee
Q 023643          180 DSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS---GKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       180 d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      ||+|+|||+|.+.  .....+.|.+-|..|.|+....+|++|+.||+++|||+|+   ++++..+        ..|..+|
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--------k~Hk~pI  350 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF--------KYHKAPI  350 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE--------EeccCCe
Confidence            9999999999872  2223478999999999999877999999999999999986   5566666        7899999


Q ss_pred             eEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          255 SCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      +++.|+|. ...|++++.|..|.+||
T Consensus       351 tsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  351 TSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             eEEEeccccCceEEeccCCCcEEEEE
Confidence            99999995 56788899999999997

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=3.4e-27  Score=177.17  Aligned_cols=216  Identities=14%  Similarity=0.186  Sum_probs=168.6

Q ss_pred             cceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY   94 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~   94 (279)
                      ......+.+...|++++|+|.   .. +++|+|...|+|-+||+.+.+..               ...+..+..|.++|.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt---~~~~lva~GdK~G~VG~Wn~~~~~~d---------------~d~v~~f~~hs~~Vs  238 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPT---ENRKLVAVGDKGGQVGLWNFGTQEKD---------------KDGVYLFTPHSGPVS  238 (498)
T ss_pred             eecceeEecccceEEEEeccc---CcceEEEEccCCCcEEEEecCCCCCc---------------cCceEEeccCCcccc
Confidence            445567788999999999995   34 78999999999999999642211               233456678999999


Q ss_pred             EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643           95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      +|.|+|... ..+++.|.||+|++-|++.... ..........                      .....+.|+.+...+
T Consensus       239 ~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~----------------------~~fs~~d~~~e~~~v  294 (498)
T KOG4328|consen  239 GLKFSPANT-SQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDN----------------------IWFSSLDFSAESRSV  294 (498)
T ss_pred             ceEecCCCh-hheeeeccCceeeeeeecchhh-HHHhhcCccc----------------------eeeeeccccCCCccE
Confidence            999999876 5899999999999999864311 1111111110                      024677888888888


Q ss_pred             EEecCCCeEEEEecCCCcE-EEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEE--ecCCccccccCc
Q 023643          175 FSAAGDSCAYCWDVESSRI-KMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKV--IDPVKDKQLKGV  250 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~  250 (279)
                      +.+.+=|...+||++++.. ...+..|...|..|+++|. ..+|+++|.|++.+|||+|.......  +..      ..|
T Consensus       295 l~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst------~~H  368 (498)
T KOG4328|consen  295 LFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST------LPH  368 (498)
T ss_pred             EEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec------ccc
Confidence            8888888999999998654 6667778889999999995 67799999999999999997443332  211      578


Q ss_pred             ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          251 ISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ...|.++.|||.+-.|+|.+.|..|+|||
T Consensus       369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             cceeeeeEEcCCCCceEeeccCCceEEee
Confidence            89999999999988899999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.6e-27  Score=173.76  Aligned_cols=206  Identities=14%  Similarity=0.153  Sum_probs=170.1

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      .+.+..|.++|+-+.||+    +|++||+++.|.+..+|++.....                .+...++.+|..+|.-+.
T Consensus       217 ~qil~~htdEVWfl~FS~----nGkyLAsaSkD~Taiiw~v~~d~~----------------~kl~~tlvgh~~~V~yi~  276 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSH----NGKYLASASKDSTAIIWIVVYDVH----------------FKLKKTLVGHSQPVSYIM  276 (519)
T ss_pred             hhhHhhCCCcEEEEEEcC----CCeeEeeccCCceEEEEEEecCcc----------------eeeeeeeecccCceEEEE
Confidence            446678999999999999    999999999999999999875321                345678889999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |+|+..  +|++|+.|..+++||+.++...   ..+....                     ...+.+++|.||+..+++|
T Consensus       277 wSPDdr--yLlaCg~~e~~~lwDv~tgd~~---~~y~~~~---------------------~~S~~sc~W~pDg~~~V~G  330 (519)
T KOG0293|consen  277 WSPDDR--YLLACGFDEVLSLWDVDTGDLR---HLYPSGL---------------------GFSVSSCAWCPDGFRFVTG  330 (519)
T ss_pred             ECCCCC--eEEecCchHheeeccCCcchhh---hhcccCc---------------------CCCcceeEEccCCceeEec
Confidence            999998  9999999999999998764221   1111111                     0136899999999999999


Q ss_pred             cCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643          178 AGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      +.|+.|..||++ |..+...++-. ..|.+++..+||+++++.+.|..|++|+..+......+         ....+|++
T Consensus       331 s~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li---------se~~~its  400 (519)
T KOG0293|consen  331 SPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI---------SEEQPITS  400 (519)
T ss_pred             CCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc---------cccCceeE
Confidence            999999999997 55555555433 56899999999999999999999999998877666554         23357999


Q ss_pred             EEEcCCCCEEEEEcCcceEEeCC
Q 023643          257 ITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       257 ~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.|.+++++++.=.+..+++||
T Consensus       401 ~~iS~d~k~~LvnL~~qei~LWD  423 (519)
T KOG0293|consen  401 FSISKDGKLALVNLQDQEIHLWD  423 (519)
T ss_pred             EEEcCCCcEEEEEcccCeeEEee
Confidence            99999999999999999999997

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=164.57  Aligned_cols=225  Identities=14%  Similarity=0.116  Sum_probs=162.2

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+++|.+.|++++|+.    ||..||+++.|++|++|+++.-+...              .+.++.-- .-+-.+.+.
T Consensus        79 ~~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~e--------------Hr~~R~nv-e~dhpT~V~  139 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKE--------------HRCIRQNV-EYDHPTRVV  139 (420)
T ss_pred             hhhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhh--------------hhHhhccc-cCCCceEEE
Confidence            446789999999999999    99999999999999999998622110              11111111 112467899


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |.|+-. ..++++-...++++|.+...+.+........     .-.+..+        ..+...+..+.....+.+++++
T Consensus       140 FapDc~-s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~-----~D~~~f~--------~kh~v~~i~iGiA~~~k~imsa  205 (420)
T KOG2096|consen  140 FAPDCK-SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVH-----IDNLEFE--------RKHQVDIINIGIAGNAKYIMSA  205 (420)
T ss_pred             ECCCcc-eEEEEEccCCEEEEEEeeecccCCCCccccc-----ccccccc--------hhcccceEEEeecCCceEEEEe
Confidence            999987 4677777788999998754322221111100     0000000        0011124556677778899999


Q ss_pred             cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC---CceEEEecCCccccccCcceee
Q 023643          178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS---GKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      +.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..--|+||.+--   |......   ....+.+|...|
T Consensus       206 s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~---rvf~LkGH~saV  281 (420)
T KOG2096|consen  206 SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK---RVFSLKGHQSAV  281 (420)
T ss_pred             cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh---hhheeccchhhe
Confidence            999999999998 999998887777788899999999999999999999998632   2211110   111248999999


Q ss_pred             eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          255 SCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..++|+++...++|.|.||+.++||
T Consensus       282 ~~~aFsn~S~r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  282 LAAAFSNSSTRAVTVSKDGKWRIWD  306 (420)
T ss_pred             eeeeeCCCcceeEEEecCCcEEEee
Confidence            9999999999999999999999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=3.1e-26  Score=183.53  Aligned_cols=216  Identities=20%  Similarity=0.260  Sum_probs=175.9

Q ss_pred             ceeeeccccccccc--e--eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            4 DSTNWDEDAYRKSI--L--KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         4 ~v~iw~~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .++.|+..+...-.  +  ..++.....+++++.++    .|++.+.|++.|.|-+|+++++                  
T Consensus       423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~----CGNF~~IG~S~G~Id~fNmQSG------------------  480 (910)
T KOG1539|consen  423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF----CGNFVFIGYSKGTIDRFNMQSG------------------  480 (910)
T ss_pred             eEEEEeccCcccccEEecCccccccCcceEEEEEec----cCceEEEeccCCeEEEEEcccC------------------
Confidence            46778876654210  1  11222347899999999    8999999999999999999984                  


Q ss_pred             ccccccc---cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           80 IEPDGFL---HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        80 ~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                       .....+   ..|.++|.+++...-++  .+++++.+|.+++||....   .....+.-..                   
T Consensus       481 -i~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa~~~Gilkfw~f~~k---~l~~~l~l~~-------------------  535 (910)
T KOG1539|consen  481 -IHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSAGADGILKFWDFKKK---VLKKSLRLGS-------------------  535 (910)
T ss_pred             -eeecccccCccccCceeEEEecCCCc--eEEEccCcceEEEEecCCc---ceeeeeccCC-------------------
Confidence             344444   46999999999987776  9999999999999997642   1111221111                   


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                          .+.++..+.....++++..|-.|+++|..+.+.++.|.+|.+.|++++|||+|++|++++.|++|++||+.++.++
T Consensus       536 ----~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  536 ----SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             ----CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence                2567778877888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc-ceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT-NYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~wd  279 (279)
                      ..+         .-..+++.+.|+|+|.+|||...| .-|++|.
T Consensus       612 D~~---------~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  612 DGL---------LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeE---------ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            887         344578999999999999999988 6788883

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.6e-26  Score=161.19  Aligned_cols=181  Identities=19%  Similarity=0.272  Sum_probs=147.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +..+||||++... ...+++.+|++.|..+-|+.    ..+.+++++.|++||+||.++                   +.
T Consensus       121 ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~----eD~~iLSSadd~tVRLWD~rT-------------------gt  176 (334)
T KOG0278|consen  121 EKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCH----EDKCILSSADDKTVRLWDHRT-------------------GT  176 (334)
T ss_pred             HHHhhhhhccCCC-CCchhhcCCCCcceeEEEec----cCceEEeeccCCceEEEEecc-------------------Cc
Confidence            3467899987765 45678899999999999999    778888889999999999999                   45


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .++.+. -..+|+++..++++.   +++-...++|++||.......+   .++    .|                   ..
T Consensus       177 ~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lK---s~k----~P-------------------~n  226 (334)
T KOG0278|consen  177 EVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLK---SYK----MP-------------------CN  226 (334)
T ss_pred             EEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEecccccccee---ecc----Cc-------------------cc
Confidence            555554 345799999999996   5555567899999976532111   111    11                   12


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      |.+.+++|+...+++|+.|..++.||..+++.+..+ ++|.++|.|+.|+|+|...++||.||+|++|....++..
T Consensus       227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            788899999999999999999999999999999986 899999999999999999999999999999998766544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-25  Score=160.67  Aligned_cols=201  Identities=17%  Similarity=0.262  Sum_probs=154.4

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      .....|.++.|+|    .++.|++++.||++++|++..                   ... ...-.|..++.+.+|.+..
T Consensus        11 pP~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~-------------------~~l-~~~~~~~~plL~c~F~d~~   66 (323)
T KOG1036|consen   11 PPEDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPA-------------------NSL-KLKFKHGAPLLDCAFADES   66 (323)
T ss_pred             CChhceeeEEEcC----cCCcEEEEeccCcEEEEeccc-------------------hhh-hhheecCCceeeeeccCCc
Confidence            3467899999999    778888888999999999997                   222 2233489999999999865


Q ss_pred             CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCe
Q 023643          103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSC  182 (279)
Q Consensus       103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  182 (279)
                         .+++|+-||.|+.+|+++.....     .+                     .|...|+|+.+++....+++|+.|++
T Consensus        67 ---~~~~G~~dg~vr~~Dln~~~~~~-----ig---------------------th~~~i~ci~~~~~~~~vIsgsWD~~  117 (323)
T KOG1036|consen   67 ---TIVTGGLDGQVRRYDLNTGNEDQ-----IG---------------------THDEGIRCIEYSYEVGCVISGSWDKT  117 (323)
T ss_pred             ---eEEEeccCceEEEEEecCCccee-----ec---------------------cCCCceEEEEeeccCCeEEEcccCcc
Confidence               79999999999999997642211     11                     12224799999998889999999999


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE---------------EecCCc----
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK---------------VIDPVK----  243 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---------------~~~~~~----  243 (279)
                      |++||.+.......+. ....|.++...  ++.|+.|+.|..+.+||+++.....               .++..+    
T Consensus       118 ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~  194 (323)
T KOG1036|consen  118 IKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV  194 (323)
T ss_pred             EEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE
Confidence            9999999866666665 34478888765  7899999999999999998743221               111000    


Q ss_pred             ---------------------cccccCcc---------eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          244 ---------------------DKQLKGVI---------SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ---------------------~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                                           ...++.|.         -+|++++|+|-...||||+.||.|.+||
T Consensus       195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence                                 01333443         3799999999989999999999999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.2e-26  Score=176.58  Aligned_cols=214  Identities=14%  Similarity=0.171  Sum_probs=180.1

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      ++.|||+......+..++..-.-..++++.+|    |.++.+++..||.|.|||+..                   ...+
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~sp----DakvcFsccsdGnI~vwDLhn-------------------q~~V  544 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAISP----DAKVCFSCCSDGNIAVWDLHN-------------------QTLV  544 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcCC----ccceeeeeccCCcEEEEEccc-------------------ceee
Confidence            68899988766554555554456788899999    999999999999999999998                   6778


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      +.|++|.+.+.||..+++|.  .|.||+-|.+||.||+++.....      .+...                    ..|.
T Consensus       545 rqfqGhtDGascIdis~dGt--klWTGGlDntvRcWDlregrqlq------qhdF~--------------------SQIf  596 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGT--KLWTGGLDNTVRCWDLREGRQLQ------QHDFS--------------------SQIF  596 (705)
T ss_pred             ecccCCCCCceeEEecCCCc--eeecCCCccceeehhhhhhhhhh------hhhhh--------------------hhhe
Confidence            99999999999999999998  99999999999999998642211      11110                    1378


Q ss_pred             eEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc
Q 023643          164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK  243 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  243 (279)
                      ++..+|++.++++|-.++.+-+.... +.....+..|+.-|.++.|.+.|+++++.+.|+.+-.|...-|..+...    
T Consensus       597 SLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----  671 (705)
T KOG0639|consen  597 SLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----  671 (705)
T ss_pred             ecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----
Confidence            99999999999999999999888765 5556667779999999999999999999999999999999888877765    


Q ss_pred             cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          244 DKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                           .....|.++.++.|.++++||+.|....+|
T Consensus       672 -----kE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  672 -----KESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             -----cccCcceeeeeccCceEEEecCCCcceEEE
Confidence                 344689999999999999999999776665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=176.17  Aligned_cols=228  Identities=14%  Similarity=0.202  Sum_probs=175.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEE-CCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVW-GPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |-+|++|+......-++.++..|.+-|.|+++ .+    +..++|+|+-|+.|.+||++++.......+.+         
T Consensus        94 DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak----~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------  160 (735)
T KOG0308|consen   94 DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK----NNELVASGGLDRKIFLWDINTGTATLVASFNN---------  160 (735)
T ss_pred             CceEEEeecccCcchhHhhhhcccchheeeeeccc----CceeEEecCCCccEEEEEccCcchhhhhhccc---------
Confidence            67899999776544567889999999999999 55    88999999999999999999864322111111         


Q ss_pred             ccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .....+. ++..+|++++.++.+.  .|++|+..+.+++||.++.   ..+..+.+|..                     
T Consensus       161 ~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgtek~lr~wDprt~---~kimkLrGHTd---------------------  214 (735)
T KOG0308|consen  161 VTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTEKDLRLWDPRTC---KKIMKLRGHTD---------------------  214 (735)
T ss_pred             cccccCCCCCccceeeeecCCcce--EEEecCcccceEEeccccc---cceeeeecccc---------------------
Confidence            1222333 8999999999999997  9999999999999997654   44444554332                     


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKV  238 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~  238 (279)
                       -|.++..++||..+++++.||+|++||+...+++.++..|...|+++..+|+-..+.+|+.||.|..=|+++. ++...
T Consensus       215 -NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli  293 (735)
T KOG0308|consen  215 -NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI  293 (735)
T ss_pred             -ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence             2789999999999999999999999999999999999999999999999999999999999999999999984 33333


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +.         ...+|..+..+.+.+-+-+++.|+.|+-|
T Consensus       294 ck---------~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  294 CK---------EDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             ec---------CCCchhhhhhccccCCceeeeccccceec
Confidence            32         22344555554333323444455555555

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=6.4e-26  Score=168.32  Aligned_cols=228  Identities=16%  Similarity=0.195  Sum_probs=175.5

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      ...+..|.++|..+.|-+    +...|++|+.|..|++|++....                 .+.+.++.+..++|+++.
T Consensus       168 ~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k-----------------~~~~~tLaGs~g~it~~d  226 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEK-----------------SELISTLAGSLGNITSID  226 (459)
T ss_pred             hhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccch-----------------hhhhhhhhccCCCcceee
Confidence            345667899999999999    88999999999999999998643                 346678888889999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe------------ecCCCCCcccc--------CC
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL------------VNHQHKGPWGA--------LS  157 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--------~~  157 (279)
                      |.+++.  ++++++.|+.+++|+++..   .....+.+ |...+...            ........|+.        ..
T Consensus       227 ~d~~~~--~~iAas~d~~~r~Wnvd~~---r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l  300 (459)
T KOG0288|consen  227 FDSDNK--HVIAASNDKNLRLWNVDSL---RLRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL  300 (459)
T ss_pred             ecCCCc--eEEeecCCCceeeeeccch---hhhhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence            999998  9999999999999998754   22233333 22222222            11111222222        11


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      +...+..|..+  ...+++|..|++|++||.++..+..+...+. .|+++..++++..|++++.|.++.+.|+++.+...
T Consensus       301 ~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~  377 (459)
T KOG0288|consen  301 PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ  377 (459)
T ss_pred             ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence            22334555554  4578889999999999999999999988665 89999999999999999999999999999988888


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+....    ..-....+.+.|||++.|+++||.||.|+||+
T Consensus       378 ~~sA~g----~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~  415 (459)
T KOG0288|consen  378 TFSAEG----FKCASDWTRVVFSPDGSYVAAGSADGSVYIWS  415 (459)
T ss_pred             Eeeccc----cccccccceeEECCCCceeeeccCCCcEEEEE
Confidence            775432    11223488999999999999999999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-25  Score=157.01  Aligned_cols=199  Identities=16%  Similarity=0.126  Sum_probs=153.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccccc---------CCc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGL---------SNS   72 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---------~~~   72 (279)
                      |.++.+|-..++  +.+-++.+|.+.|+++...-    +.+++++|+.|.++++||+.++++...+..         ...
T Consensus        31 D~~~~vw~s~nG--erlGty~GHtGavW~~Did~----~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~  104 (327)
T KOG0643|consen   31 DSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDW----DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFG  104 (327)
T ss_pred             CCCceEEEecCC--ceeeeecCCCceEEEEEecC----CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccC
Confidence            567788875444  45889999999999999998    899999999999999999999876652211         111


Q ss_pred             cc-------------------------ceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC
Q 023643           73 KV-------------------------QQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES  127 (279)
Q Consensus        73 ~~-------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  127 (279)
                      +.                         .+....+|...+..+...++..-|.|.++  .|++|..||.|.+||++++...
T Consensus       105 gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~--~ii~Ghe~G~is~~da~~g~~~  182 (327)
T KOG0643|consen  105 GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE--TIIAGHEDGSISIYDARTGKEL  182 (327)
T ss_pred             CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC--EEEEecCCCcEEEEEcccCcee
Confidence            10                         01111455666777888999999999998  9999999999999998764221


Q ss_pred             cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----------
Q 023643          128 KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-----------  196 (279)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------  196 (279)
                      .   .....|..                     .|+.+.++|+..++++++.|.+-++||.++-+.+.+           
T Consensus       183 v---~s~~~h~~---------------------~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  183 V---DSDEEHSS---------------------KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             e---echhhhcc---------------------ccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            1   11111111                     378999999999999999999999999876544332           


Q ss_pred             --------------------------------------------eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          197 --------------------------------------------FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       197 --------------------------------------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                                                                  .++|-++|.+++|+|+|+..++|++||.|++.-...
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                                                        367889999999999999999999999999986554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.8e-26  Score=189.53  Aligned_cols=226  Identities=14%  Similarity=0.219  Sum_probs=178.7

Q ss_pred             CCceeeecccc----ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDA----YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      ||.|-+||...    .....+.+...|.+.|..+.|++.   .+++||+|++||.|.|||++..+....+.         
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~---q~nlLASGa~~geI~iWDlnn~~tP~~~~---------  156 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF---QGNLLASGADDGEILIWDLNKPETPFTPG---------  156 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeecccc---CCceeeccCCCCcEEEeccCCcCCCCCCC---------
Confidence            89999999654    345667788899999999999994   67799999999999999999742211110         


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                              -..-.+.|.+++|+..-. +.|++++.+|.+.|||++..   +.+..+......                  
T Consensus       157 --------~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~------------------  206 (1049)
T KOG0307|consen  157 --------SQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKK---KPIIKLSDTPGR------------------  206 (1049)
T ss_pred             --------CCCCcccceEeccchhhh-HHhhccCCCCCceeccccCC---CcccccccCCCc------------------
Confidence                    122456799999998766 68999999999999999753   222222221110                  


Q ss_pred             CCCCceeEEEcCCCC-eEEEecCC---CeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCC
Q 023643          158 PVPENNAIAVDPQGG-AIFSAAGD---SCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~-~l~~~~~d---~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~  231 (279)
                        ..+..++|+|+.. .+++++.|   -.|.+||+|.. .+++++++|...|.+|.|++. ..+|++++.|+.|.+|+..
T Consensus       207 --~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  207 --MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             --cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence              1268999999875 56666655   36999999864 678888999999999999995 5899999999999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd  279 (279)
                      +++.+..+        .....++..+.|+|... .+++++-||.|.||+
T Consensus       285 tgEvl~~~--------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  285 TGEVLGEL--------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             CceEeeec--------CCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            99999998        45667999999999765 788889999998874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.3e-25  Score=173.92  Aligned_cols=181  Identities=17%  Similarity=0.210  Sum_probs=152.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.|..+|+...+.. ...+.+|..+|..++|++    ++.+||+|+.|+.+.|||...                   .+
T Consensus       279 ~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~----d~~~lASGgnDN~~~Iwd~~~-------------------~~  334 (484)
T KOG0305|consen  279 DGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSP----DGNQLASGGNDNVVFIWDGLS-------------------PE  334 (484)
T ss_pred             CCcEEEEEEecchhh-hhhhhcccceeeeeEECC----CCCeeccCCCccceEeccCCC-------------------cc
Confidence            788889998776532 225889999999999999    999999999999999999966                   67


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      +...+..|.+.|.+++|+|-.. .+||+|+  .|+.|++||..++...   .....                       .
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i---~~vdt-----------------------g  387 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARI---DSVDT-----------------------G  387 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEe---ccccc-----------------------C
Confidence            7888999999999999999766 4888875  5999999998643221   11111                       1


Q ss_pred             CCceeEEEcCCCCeEEE--ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFS--AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      .+|.+|.|++..+.|++  |..+..|.||+..+.+.+..+.+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            14899999998877766  455788999999999999999999999999999999999999999999999998764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.9e-25  Score=170.18  Aligned_cols=211  Identities=21%  Similarity=0.356  Sum_probs=166.4

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc--CCccCeEEEEecC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKFYG  100 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~  100 (279)
                      .|.+-|.++..+.    ..+.+.||+. |.|+|||+.....                ..++..+.  .....|.++...|
T Consensus       417 ~HGEvVcAvtIS~----~trhVyTgGk-gcVKVWdis~pg~----------------k~PvsqLdcl~rdnyiRSckL~p  475 (705)
T KOG0639|consen  417 AHGEVVCAVTISN----PTRHVYTGGK-GCVKVWDISQPGN----------------KSPVSQLDCLNRDNYIRSCKLLP  475 (705)
T ss_pred             ccCcEEEEEEecC----CcceeEecCC-CeEEEeeccCCCC----------------CCccccccccCcccceeeeEecC
Confidence            4778888888888    7788888876 6799999986422                22333332  2356788999999


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD  180 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  180 (279)
                      ++.  .|++|+.-.++.|||+.... ......+....                      ....+++.+||.+..++++.|
T Consensus       476 dgr--tLivGGeastlsiWDLAapT-prikaeltssa----------------------paCyALa~spDakvcFsccsd  530 (705)
T KOG0639|consen  476 DGR--TLIVGGEASTLSIWDLAAPT-PRIKAELTSSA----------------------PACYALAISPDAKVCFSCCSD  530 (705)
T ss_pred             CCc--eEEeccccceeeeeeccCCC-cchhhhcCCcc----------------------hhhhhhhcCCccceeeeeccC
Confidence            998  99999999999999986421 11111111110                      125788999999999999999


Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC------------------
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV------------------  242 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------  242 (279)
                      |.|.|||+.+...++.|++|...+.||..+++|..|-+|+.|++||.||+++++.+......                  
T Consensus       531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence            99999999999999999999999999999999999999999999999999988665543211                  


Q ss_pred             --------------ccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          243 --------------KDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       243 --------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                                    ....+.-|..-|.++.|.+.|+++++.+.|+.+..|+
T Consensus       611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             cccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence                          1135567888899999999999999999999888884

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=156.71  Aligned_cols=220  Identities=12%  Similarity=0.113  Sum_probs=158.6

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      -.|+.|++    .|.+||+|+.||.|.|||+.+                   ...-+.+.+|..+|.+++|+++|.  .|
T Consensus        26 a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T-------------------~~iar~lsaH~~pi~sl~WS~dgr--~L   80 (405)
T KOG1273|consen   26 AECCQFSR----WGDYLAVGCANGRVVIYDFDT-------------------FRIARMLSAHVRPITSLCWSRDGR--KL   80 (405)
T ss_pred             cceEEecc----CcceeeeeccCCcEEEEEccc-------------------cchhhhhhccccceeEEEecCCCC--Ee
Confidence            78899999    999999999999999999999                   677788899999999999999998  99


Q ss_pred             EEeeCCCcEEEeecCCCccCccee--------eeccC-cccceEEeecCC--------CCCccccCCCC----CCceeEE
Q 023643          108 LSCGDDGRICGWRWKEFTESKVPI--------NLQGN-HVKPVLDLVNHQ--------HKGPWGALSPV----PENNAIA  166 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~----~~i~~~~  166 (279)
                      +|+|.|..|.+||+..+.....+.        .+..+ ....+..+....        ...........    ....+..
T Consensus        81 ltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~  160 (405)
T KOG1273|consen   81 LTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV  160 (405)
T ss_pred             eeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence            999999999999997654222111        00100 011111111000        00000000111    1122345


Q ss_pred             EcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-------ceE--
Q 023643          167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-------KCI--  236 (279)
Q Consensus       167 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-------~~~--  236 (279)
                      |++.|+++++|...|.+.++|..+.+++..++-.. ..|..+.++..|+.|+.-+.|+.||.|+++.-       +..  
T Consensus       161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~  240 (405)
T KOG1273|consen  161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE  240 (405)
T ss_pred             ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChh
Confidence            88899999999999999999999999999998766 78999999999999999999999999998631       111  


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILF  278 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~w  278 (279)
                      +.+..      .-....-.+++|+.+|.|+++|+. ...+++|
T Consensus       241 ~K~qD------vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW  277 (405)
T KOG1273|consen  241 HKLQD------VVNKLQWKKCCFSGDGEYVCAGSARAHALYIW  277 (405)
T ss_pred             HHHHH------HHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence            11100      112234567899999999988874 4567777

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.5e-24  Score=154.96  Aligned_cols=236  Identities=17%  Similarity=0.196  Sum_probs=174.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.++++||.++.+.  ...++ -.+.|++-+++|... ...++|+|..+-+|++.|+.+                   +
T Consensus       122 FDhtlKVWDtnTlQ~--a~~F~-me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~S-------------------G  178 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQE--AVDFK-MEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIAS-------------------G  178 (397)
T ss_pred             ccceEEEeeccccee--eEEee-cCceeehhhcChhhh-cceEEEEecCCCcEEEEeccC-------------------C
Confidence            488999999988654  33333 347899999999532 346889999999999999999                   7


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ...+++.+|.+.|.++.|+|... ..|++|+.||.|++||++...  .+...+..+..+....+.        .-..+.+
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRras--gcf~~lD~hn~k~~p~~~--------~n~ah~g  247 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRAS--GCFRVLDQHNTKRPPILK--------TNTAHYG  247 (397)
T ss_pred             cceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeeccc--ceeEEeecccCccCcccc--------ccccccc
Confidence            78899999999999999999887 578999999999999997532  233333332211100000        1233445


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-Eee--cCCcc---eEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFK--GHSDY---LHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~--~~~~~---i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      .++.++|+.++.++++.+.|..+++|+..+|+... .+-  .|...   -..+. +.+...++---.++.+.++.+-++.
T Consensus       248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs  326 (397)
T KOG4283|consen  248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGS  326 (397)
T ss_pred             eeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCce
Confidence            68999999999999999999999999998875322 110  11111   11122 2333444444556899999999999


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..+        ..|-..|.+.++.|+-+...+|..|+.+..|.
T Consensus       327 ~ir~l--------~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  327 FVRRL--------STHLKRINCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             EEEee--------ecccceeeEEeecCchhhhhccccCCcccccc
Confidence            99998        67888899999999999999999999999883

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=174.11  Aligned_cols=220  Identities=15%  Similarity=0.218  Sum_probs=173.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.||+|+..... ........+...|.+++-..      .+|++|+.+++|.+|.+..+                   
T Consensus        33 sdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fps~-------------------   86 (933)
T KOG1274|consen   33 SDGDIRKWKTNSDE-EEPETIDISGELVSSIACYS------NHFLTGSEQNTVLRYKFPSG-------------------   86 (933)
T ss_pred             CCCceEEeecCCcc-cCCchhhccCceeEEEeecc------cceEEeeccceEEEeeCCCC-------------------
Confidence            48999999855432 11222333667788777654      69999999999999999983                   


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.-..+..-+-++.+++|+.+|+  +++.||.|-.|++-++.+....   ..+.++                      ..
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~---~~lrgh----------------------~a  139 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQE---KVLRGH----------------------DA  139 (933)
T ss_pred             CccceeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchh---eeeccc----------------------CC
Confidence            44444445667899999999998  9999999999999997654222   222221                      12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec-------C-CcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-------H-SDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      +|.++.|+|.+++||+.+.||.|++||+.++.+...+.+       - ...+..++|+|++..++..+.|+.|++|+...
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            479999999999999999999999999999887766543       1 34566789999988888899999999999999


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ......+..      ..+...+..+.|+|+|.|||+++.||.|.|||
T Consensus       220 we~~f~Lr~------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  220 WELQFKLRD------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             ceeheeecc------cccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence            988888865      34445599999999999999999999999997

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=2.1e-25  Score=161.18  Aligned_cols=240  Identities=18%  Similarity=0.193  Sum_probs=169.4

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      |.|||.|+...  ++.+.+.+|...|..+.++|.   +.+++++++.|..||+|++++..+...+               
T Consensus       115 GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~---~~qlvls~SkD~svRlwnI~~~~Cv~Vf---------------  174 (385)
T KOG1034|consen  115 GVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPD---RPQLVLSASKDHSVRLWNIQTDVCVAVF---------------  174 (385)
T ss_pred             eEEEEEecchh--hhccceeccCccchhhhcCCC---CCcEEEEecCCceEEEEeccCCeEEEEe---------------
Confidence            78899998776  557789999999999999995   7889999999999999999994332221               


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc-------
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA-------  155 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  155 (279)
                       .-+.+|.+.|.++.|++++.  +|++++.|.+|++|+++..+-..        +......+..+...+++..       
T Consensus       175 -GG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~--------~lE~s~~~~~~~t~~pfpt~~~~fp~  243 (385)
T KOG1034|consen  175 -GGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKN--------KLELSITYSPNKTTRPFPTPKTHFPD  243 (385)
T ss_pred             -cccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhh--------hhhhhcccCCCCccCcCCcccccccc
Confidence             22356999999999999998  99999999999999997321100        0000011111111111111       


Q ss_pred             ----CCCCCCceeEEEcCCCCeEEEecCCCeEEEEec-CCC-------------cEEEEeecCCcceEEEEE--cCCCcE
Q 023643          156 ----LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV-ESS-------------RIKMVFKGHSDYLHCIVA--RNSTNQ  215 (279)
Q Consensus       156 ----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~-------------~~~~~~~~~~~~i~~i~~--~~~~~~  215 (279)
                          .-|...|-|+.|-  |+++++-+.++.|..|.. +-.             ..+.++.-....|+-|.|  .|-++.
T Consensus       244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~  321 (385)
T KOG1034|consen  244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM  321 (385)
T ss_pred             ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence                1122345666664  568888888999999987 211             123344444555666654  556899


Q ss_pred             EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          216 IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       216 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ||.|...|.|.+||++...+...-....    ......|...+|+.|+..|+....|++|.-||
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~----s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTH----SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEe----ccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            9999999999999999876531111000    23346799999999999999999999999886

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.6e-24  Score=149.71  Aligned_cols=220  Identities=34%  Similarity=0.536  Sum_probs=162.4

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..|.+-+++|    .+++|++|+.+|+|.+..+++.......   +.+      ..++-..++|.++++.++|..+    
T Consensus        11 ~tvf~qa~sp----~~~~l~agn~~G~iav~sl~sl~s~sa~---~~g------k~~iv~eqahdgpiy~~~f~d~----   73 (325)
T KOG0649|consen   11 NTVFAQAISP----SKQYLFAGNLFGDIAVLSLKSLDSGSAE---PPG------KLKIVPEQAHDGPIYYLAFHDD----   73 (325)
T ss_pred             HHHHHHhhCC----cceEEEEecCCCeEEEEEehhhhccccC---CCC------CcceeeccccCCCeeeeeeehh----
Confidence            4577778999    8999999999999999999864322210   000      3344556899999999999833    


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      +|++|+ ||.|+=|..++..+.        .+.++++.+..+.+..    ....+.|+++...|..+-++.++.|+.++-
T Consensus        74 ~Lls~g-dG~V~gw~W~E~~es--------~~~K~lwe~~~P~~~~----~~evPeINam~ldP~enSi~~AgGD~~~y~  140 (325)
T KOG0649|consen   74 FLLSGG-DGLVYGWEWNEEEES--------LATKRLWEVKIPMQVD----AVEVPEINAMWLDPSENSILFAGGDGVIYQ  140 (325)
T ss_pred             heeecc-CceEEEeeehhhhhh--------ccchhhhhhcCccccC----cccCCccceeEeccCCCcEEEecCCeEEEE
Confidence            677777 599999998754221        3444444444443332    222346899999998888888889999999


Q ss_pred             EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC-c-ceeeeEEEEcCCC
Q 023643          186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG-V-ISCVSCITLDASE  263 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~  263 (279)
                      ||+++|+..+++++|+..|.++.-......+++|++||++|+||+++++++..+.+.....+.. | ..+|-+++-  +.
T Consensus       141 ~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~e  218 (325)
T KOG0649|consen  141 VDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NE  218 (325)
T ss_pred             EEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cC
Confidence            9999999999999999999999886667789999999999999999999999998765433222 2 234555554  56


Q ss_pred             CEEEEEcCcceEEeC
Q 023643          264 SWLVRVRATNYVILF  278 (279)
Q Consensus       264 ~~l~~~~~d~~i~~w  278 (279)
                      .+|++|+.- .+.+|
T Consensus       219 dWlvCGgGp-~lslw  232 (325)
T KOG0649|consen  219 DWLVCGGGP-KLSLW  232 (325)
T ss_pred             ceEEecCCC-ceeEE
Confidence            778887653 34555

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=169.84  Aligned_cols=251  Identities=16%  Similarity=0.149  Sum_probs=172.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccc-------cCCc--
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLG-------LSNS--   72 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~--   72 (279)
                      |.++|+||++.....-...+.+|...|.+++|.|.   +...|++|+.||.|.|||++.........       ..+.  
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~---n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p  197 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT---NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP  197 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccC---CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence            67899999998865445568899999999999995   88999999999999999997644222111       1111  


Q ss_pred             ccceeeeccccccccCCccCeEE---EEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643           73 KVQQLLGIEPDGFLHGHDGPAYD---VKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ  148 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (279)
                      ...+.. .+.+...+.|...|.+   +.+..|..  .|+++|. |+.|++||++.............+ .     +... 
T Consensus       198 tpskp~-~kr~~k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~-~-----~~t~-  267 (720)
T KOG0321|consen  198 TPSKPL-KKRIRKWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSD-K-----YPTH-  267 (720)
T ss_pred             CCCchh-hccccccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCccc-C-----ccCc-
Confidence            111111 3334444556655655   55566665  8999888 999999999864322111111000 0     0000 


Q ss_pred             CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeecCCcce--EEEEEcCCCcEEEEecCCCe
Q 023643          149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYL--HCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i--~~i~~~~~~~~l~~~~~d~~  224 (279)
                             ......+.++..+..|.+|++.+.|+.|++||+.+-  .++..+.++...-  ..-..+|++.++++|+.|..
T Consensus       268 -------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  268 -------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             -------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence                   000113678888888999998888999999999863  4555555543321  12246799999999999999


Q ss_pred             EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      .++|.+.+.+.-..+.       .+|...|++++|.|. -.-++|++.|..+++|+
T Consensus       341 ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  341 AYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             eeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            9999998866544442       799999999999884 23467779999999996

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-24  Score=161.77  Aligned_cols=242  Identities=12%  Similarity=0.193  Sum_probs=182.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCccc-------------c
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKL-------------P   66 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~-------------~   66 (279)
                      +||.++||.+++.....++.+.....+|.+.+|.|    +|. .+++++.-..+..||+.+.+...             .
T Consensus       233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p----~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~  308 (514)
T KOG2055|consen  233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP----NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMER  308 (514)
T ss_pred             CCCcEEEEEecCccChhheeeeeccCccceeeecC----CCceEEEecccceEEEEeeccccccccccCCCCcccchhhe
Confidence            58999999999988778888888889999999999    787 89999999999999998764332             1


Q ss_pred             cccCCcccceeee-------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee
Q 023643           67 LGLSNSKVQQLLG-------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL  133 (279)
Q Consensus        67 ~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  133 (279)
                      ++.++...--.+.             .+.+..++ -.+.|..++|+.+++  .|++++.+|.|.+||++..   .+...+
T Consensus       309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~GeV~v~nl~~~---~~~~rf  382 (514)
T KOG2055|consen  309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTGEVYVWNLRQN---SCLHRF  382 (514)
T ss_pred             eEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCceEEEEecCCc---ceEEEE
Confidence            1111211100000             22222332 356789999999997  8888888999999999753   222222


Q ss_pred             ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC------CcEEEEeecCCcceEEE
Q 023643          134 QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES------SRIKMVFKGHSDYLHCI  207 (279)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~i  207 (279)
                      ......                     .-++++.++++.+||+|+..|.|.|||..+      .+++..+..-...|+.|
T Consensus       383 ~D~G~v---------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  383 VDDGSV---------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             eecCcc---------------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            211100                     126788889999999999999999999653      46777777677889999


Q ss_pred             EEcCCCcEEEEecC--CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          208 VARNSTNQIVTGSE--DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       208 ~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .|+++.+.|+.+|.  +..+++-.+.+......++..     ...-..|+|++|+|.+-+||.|..+|.+.+|
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-----CCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            99999999888774  677999888887766666543     3444679999999999999999999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.3e-24  Score=171.13  Aligned_cols=217  Identities=14%  Similarity=0.215  Sum_probs=166.7

Q ss_pred             CCCceeeecccccccc-ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKS-ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ++++|.+|........ ++..+   .-++..++|+-    +|+++|.|+.|-.|++-+..+                   
T Consensus        74 ~~~tv~~y~fps~~~~~iL~Rf---tlp~r~~~v~g----~g~~iaagsdD~~vK~~~~~D-------------------  127 (933)
T KOG1274|consen   74 EQNTVLRYKFPSGEEDTILARF---TLPIRDLAVSG----SGKMIAAGSDDTAVKLLNLDD-------------------  127 (933)
T ss_pred             ccceEEEeeCCCCCccceeeee---eccceEEEEec----CCcEEEeecCceeEEEEeccc-------------------
Confidence            4678888886665433 33333   47899999999    999999999999999999998                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ......+++|.++|.++.|+|++.  +||+.+-||.|++|++.+.........+.....     +..            .
T Consensus       128 ~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-----~~~------------s  188 (933)
T KOG1274|consen  128 SSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-----FIL------------S  188 (933)
T ss_pred             cchheeecccCCceeeeeEcCCCC--EEEEEecCceEEEEEcccchhhhhcccCCcccc-----ccc------------c
Confidence            566788999999999999999998  999999999999999876433222221111100     000            0


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      .-+..++|+|++..+++.+.|+.|++|+...++....+..  +...+.++.|+|.|+|||+++.||.|.|||.++...  
T Consensus       189 ~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--  266 (933)
T KOG1274|consen  189 RICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--  266 (933)
T ss_pred             ceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--
Confidence            1257889999999999999999999999999988887754  445589999999999999999999999999987221  


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                                ......|.+++|.|+.+.+-.-...|.
T Consensus       267 ----------~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  267 ----------HEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             ----------ccccceeEEEecCCCCCeeEEEeeccc
Confidence                      123357899999998776544433333

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=2.3e-23  Score=158.76  Aligned_cols=232  Identities=14%  Similarity=0.165  Sum_probs=172.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc---------
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS---------   72 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------   72 (279)
                      +|.|.||+..+.+.  .+....|.+.|.+++.-.    +|.+|- |+.|..|..||-+ -......+....         
T Consensus       266 ~G~i~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr----~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  266 GGNILIWSKGTNRI--SKQVHAHDGGVFSLCMLR----DGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             CceEEEEeCCCceE--EeEeeecCCceEEEEEec----CccEee-cCccceEEecccc-ccccccccCchhcCCeeEEec
Confidence            68999999877643  444558999999999998    787655 9999999999932 222211111110         


Q ss_pred             -ccc--------eeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCccc
Q 023643           73 -KVQ--------QLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK  139 (279)
Q Consensus        73 -~~~--------~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  139 (279)
                       ..+        .++.    ........+|......++.+|+.+  +++|++.|+.+++|+   ............    
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~--q~~T~gqdk~v~lW~---~~k~~wt~~~~d----  408 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN--QLLTCGQDKHVRLWN---DHKLEWTKIIED----  408 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh--heeeccCcceEEEcc---CCceeEEEEecC----
Confidence             000        1111    222234567889999999999998  999999999999999   211111111111    


Q ss_pred             ceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                                           ++.|+.|+|.| .++.|+..|...+.|.++...+..-.. ..++.+|+|+|+|.+||.|
T Consensus       409 ---------------------~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  409 ---------------------PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             ---------------------ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEe
Confidence                                 25799999999 999999999999999998766665554 8899999999999999999


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.|+.|+||.+..+........      ..+..+|+.+.|++|+++|.+-+.|-.|..|.
T Consensus       466 s~d~~iyiy~Vs~~g~~y~r~~------k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  466 SHDNHIYIYRVSANGRKYSRVG------KCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             cCCCeEEEEEECCCCcEEEEee------eecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            9999999999876544333322      23338999999999999999999999998883

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.8e-24  Score=162.68  Aligned_cols=218  Identities=17%  Similarity=0.264  Sum_probs=171.5

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc-ccceeeeccccccc-cCCccCeEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS-KVQQLLGIEPDGFL-HGHDGPAYD   95 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~h~~~v~~   95 (279)
                      +.....|.-++.+++++|    +..+.++++.+|+|.-|++.++.....+--.+. ....   +.+...- +.|...+.+
T Consensus       135 ~~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~---~~~~k~~r~~h~keil~  207 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSH---GNPLKESRKGHVKEILT  207 (479)
T ss_pred             ceeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhc---cCCCCcccccccceeEE
Confidence            455677999999999999    899999999999999999998754421111100 0000   2222222 489999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      ++.+++++  +|++|+.|..|.||+.++....+   .+.++.                      +.|.+++|-.....++
T Consensus       208 ~avS~Dgk--ylatgg~d~~v~Iw~~~t~ehv~---~~~ghr----------------------~~V~~L~fr~gt~~ly  260 (479)
T KOG0299|consen  208 LAVSSDGK--YLATGGRDRHVQIWDCDTLEHVK---VFKGHR----------------------GAVSSLAFRKGTSELY  260 (479)
T ss_pred             EEEcCCCc--EEEecCCCceEEEecCcccchhh---cccccc----------------------cceeeeeeecCcccee
Confidence            99999998  99999999999999987642222   222221                      2478999988778999


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      +++.|..|++|+++....+.++-+|++.|..|....-++.+-+|+.|+++++|++..... ..+        .++...+-
T Consensus       261 s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lif--------rg~~~sid  331 (479)
T KOG0299|consen  261 SASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIF--------RGGEGSID  331 (479)
T ss_pred             eeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eee--------eCCCCCee
Confidence            999999999999999999999999999999998887788888888999999999954332 233        57788899


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |++|-. ...+++||.+|.|.+|+
T Consensus       332 cv~~In-~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  332 CVAFIN-DEHFVSGSDNGSIALWS  354 (479)
T ss_pred             eEEEec-ccceeeccCCceEEEee
Confidence            999974 56799999999999996

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=1.7e-24  Score=169.09  Aligned_cols=243  Identities=17%  Similarity=0.185  Sum_probs=164.5

Q ss_pred             CCceeeeccccccc----cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRK----SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      ||.|.++|.+....    ..++....|...|..+.|.|    ...+|++++.|.++++||+.+.                
T Consensus        73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s----------------  132 (720)
T KOG0321|consen   73 DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTS----------------  132 (720)
T ss_pred             CCceeeecchhhhcchhhhhhcccccccceeEeeccCC----CceeEEEccCCceeeeeeeccc----------------
Confidence            78999999665432    22556778999999999999    7889999999999999999983                


Q ss_pred             eeccccc--cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC----cceeeeccCcc--cceEEeecCCC
Q 023643           78 LGIEPDG--FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES----KVPINLQGNHV--KPVLDLVNHQH  149 (279)
Q Consensus        78 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~  149 (279)
                         +...  .+.+|.+.|.+++|.|..+ ..|++|+.||.|.|||++.....    ........+..  .+..-+....+
T Consensus       133 ---~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  133 ---RLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             ---eeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence               3333  3789999999999999887 68999999999999999754311    01111111111  11111111111


Q ss_pred             CCccccCCCCCCcee---EEEcCCCCeEEEecC-CCeEEEEecCCCcEEEE------e--ecC---CcceEEEEEcCCCc
Q 023643          150 KGPWGALSPVPENNA---IAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMV------F--KGH---SDYLHCIVARNSTN  214 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~------~--~~~---~~~i~~i~~~~~~~  214 (279)
                      .    -..+...|.+   +.+..|+..|++++. |+.|++||++.......      .  ..|   .-.+.++.....|.
T Consensus       209 k----~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  209 K----WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             c----cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence            1    1122223333   445567888998887 99999999987543222      2  223   23567788888889


Q ss_pred             EEEEecCCCeEEEEeCCCCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          215 QIVTGSEDGTARIWDCKSGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       215 ~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +|++.+.|+.|++|++++..  ++..+..+     ......|. -..+|++.+|++|+.|...++|
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~-----~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw  344 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGK-----LNSSFYVK-SELSPDDCSLLSGSSDEQAYIW  344 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCc-----ccceeeee-eecCCCCceEeccCCCcceeee
Confidence            98888889999999998643  22333111     01111222 2468999999999999999998

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.4e-24  Score=152.47  Aligned_cols=200  Identities=20%  Similarity=0.298  Sum_probs=158.8

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+..|.+.|++++.+-      .++|+|+.|-+|+|||+.+                   ...+..+..|.+.|+++.
T Consensus        36 lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k-------------------~~qlg~ll~HagsitaL~   90 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRK-------------------RKQLGILLSHAGSITALK   90 (362)
T ss_pred             cccccccccceeEEEecc------eeEeccCCCCcEEEEeccc-------------------hhhhcceeccccceEEEE
Confidence            446678999999999864      8999999999999999998                   566777888999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |.+.-....|++|+.||.|.+|+....   .....++.+..                      +|+.++++|.+++-++.
T Consensus        91 F~~~~S~shLlS~sdDG~i~iw~~~~W---~~~~slK~H~~----------------------~Vt~lsiHPS~KLALsV  145 (362)
T KOG0294|consen   91 FYPPLSKSHLLSGSDDGHIIIWRVGSW---ELLKSLKAHKG----------------------QVTDLSIHPSGKLALSV  145 (362)
T ss_pred             ecCCcchhheeeecCCCcEEEEEcCCe---EEeeeeccccc----------------------ccceeEecCCCceEEEE
Confidence            998764447999999999999997543   33333333222                      37999999999999999


Q ss_pred             cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      +.|+.++.||+-.|+.-..+.-. ...+-+.|+|.|.+++.++.++ |-+|.+.+.+....+..         ...+.++
T Consensus       146 g~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~---------~~r~l~~  214 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN---------PKRILCA  214 (362)
T ss_pred             cCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc---------cccceee
Confidence            99999999999988776655422 2234499999999988887665 89999988777666532         1345666


Q ss_pred             EEcCCCCEEEEEcCcceEEeCC
Q 023643          258 TLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       258 ~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .|. ++..|++|+.|+.|.+||
T Consensus       215 ~~l-~~~~L~vG~d~~~i~~~D  235 (362)
T KOG0294|consen  215 TFL-DGSELLVGGDNEWISLKD  235 (362)
T ss_pred             eec-CCceEEEecCCceEEEec
Confidence            665 577899999999999997

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.6e-22  Score=156.29  Aligned_cols=238  Identities=10%  Similarity=0.023  Sum_probs=156.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .||.|++||+++.+  .+..+..+ ..+..++|+|    ++..+ ++++.++.|++||..+                   
T Consensus         9 ~d~~v~~~d~~t~~--~~~~~~~~-~~~~~l~~~~----dg~~l~~~~~~~~~v~~~d~~~-------------------   62 (300)
T TIGR03866         9 KDNTISVIDTATLE--VTRTFPVG-QRPRGITLSK----DGKLLYVCASDSDTIQVIDLAT-------------------   62 (300)
T ss_pred             CCCEEEEEECCCCc--eEEEEECC-CCCCceEECC----CCCEEEEEECCCCeEEEEECCC-------------------
Confidence            37999999987764  35555544 3467899999    78766 6678899999999987                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccC---------cccceEEee----
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGN---------HVKPVLDLV----  145 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~----  145 (279)
                      ++....+..+.. +..+.|+|+++  .+ ++++.|+.+++||+++...   ...+...         .........    
T Consensus        63 ~~~~~~~~~~~~-~~~~~~~~~g~--~l~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~dg~~l~~~~~~~  136 (300)
T TIGR03866        63 GEVIGTLPSGPD-PELFALHPNGK--ILYIANEDDNLVTVIDIETRKV---LAEIPVGVEPEGMAVSPDGKIVVNTSETT  136 (300)
T ss_pred             CcEEEeccCCCC-ccEEEECCCCC--EEEEEcCCCCeEEEEECCCCeE---EeEeeCCCCcceEEECCCCCEEEEEecCC
Confidence            333334443333 46788999987  55 4556789999999875321   1111100         000000000    


Q ss_pred             ------cCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCC-----c--ceEEEEEcC
Q 023643          146 ------NHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHS-----D--YLHCIVARN  211 (279)
Q Consensus       146 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~-----~--~i~~i~~~~  211 (279)
                            ..................+++|+|++++++++ ..++.|++||+.+++.+..+..+.     .  ....++|+|
T Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  216 (300)
T TIGR03866       137 NMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK  216 (300)
T ss_pred             CeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC
Confidence                  00000000001112245678999999988654 468999999999988777664321     1  234688999


Q ss_pred             CCcEEEE-ecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643          212 STNQIVT-GSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS  279 (279)
Q Consensus       212 ~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd  279 (279)
                      ++++++. .+.++.+.+||+++++.+..+.         +...+.+++|+|++++|+++ +.++.|.+||
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL---------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEE---------eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            9988544 4567789999999888776552         22368899999999999886 4689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.1e-23  Score=162.97  Aligned_cols=219  Identities=16%  Similarity=0.235  Sum_probs=173.0

Q ss_pred             CCCceeeeccccccccceeeeeec-ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREIL-TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .||.|.||++...-.. ...+.++ ...|.+++|++     +.+|++.+.+|.|.-||+.+                   
T Consensus        45 t~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e-----~~RLFS~g~sg~i~EwDl~~-------------------   99 (691)
T KOG2048|consen   45 TDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAE-----GGRLFSSGLSGSITEWDLHT-------------------   99 (691)
T ss_pred             cCCcEEEEccCCCcee-eEEEecCCCCceeeEEEcc-----CCeEEeecCCceEEEEeccc-------------------
Confidence            4899999998874322 2233333 56799999997     56788889999999999998                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .++...+....+.|++++.+|.+.  .++.|+.||.+..++..... ......+.. .                     .
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~-I~~~r~l~r-q---------------------~  154 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDK-ITYKRSLMR-Q---------------------K  154 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCce-EEEEeeccc-c---------------------c
Confidence            677778888889999999999998  99999999977777754321 111111111 1                     1


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee--------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK--------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      .++.+++|+|++..+++|+.||.|++||..++..+....        +...-|+++.|-. ...|++|...|+|++||..
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSI  233 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEccc
Confidence            147899999999999999999999999999987776221        1234567777764 5689999999999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+.+++.+        ..|.+.|.+++..+++.++++++.|+.|..|
T Consensus       234 ~gTLiqS~--------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  234 FGTLIQSH--------SCHDADVLALAVADNEDRVFSAGVDPKIIQY  272 (691)
T ss_pred             Ccchhhhh--------hhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence            99999888        7888999999999999999999999988654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4.3e-24  Score=169.28  Aligned_cols=203  Identities=17%  Similarity=0.216  Sum_probs=163.5

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC-CC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG-NE  103 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~  103 (279)
                      ...+.+++.+|    ++++||+|..-|+|+||++..                   .+.+..+..|+..|.|+.|+.. -.
T Consensus       459 r~G~R~~~vSp----~gqhLAsGDr~GnlrVy~Lq~-------------------l~~~~~~eAHesEilcLeyS~p~~~  515 (1080)
T KOG1408|consen  459 RFGFRALAVSP----DGQHLASGDRGGNLRVYDLQE-------------------LEYTCFMEAHESEILCLEYSFPVLT  515 (1080)
T ss_pred             ccceEEEEECC----CcceecccCccCceEEEEehh-------------------hhhhhheecccceeEEEeecCchhh
Confidence            45689999999    999999999999999999998                   6777888999999999999853 22


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC--CeEEEecCCC
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG--GAIFSAAGDS  181 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~  181 (279)
                      ..+|++++.|.-|.++|+..  +......+.++..                      .|+++.|...|  ..+++++.|.
T Consensus       516 ~kLLASasrdRlIHV~Dv~r--ny~l~qtld~HSs----------------------sITsvKFa~~gln~~MiscGADk  571 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKR--NYDLVQTLDGHSS----------------------SITSVKFACNGLNRKMISCGADK  571 (1080)
T ss_pred             hHhhhhccCCceEEEEeccc--ccchhhhhccccc----------------------ceeEEEEeecCCceEEEeccCch
Confidence            24899999999999999742  2233333333222                      37999998877  5788999998


Q ss_pred             eEEEEecCCCcEEEEeecC-----CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643          182 CAYCWDVESSRIKMVFKGH-----SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      .|.+--.+.....+.|..|     ...++.|+..|..+++++++.|+.|+|||+.+++..+.++..     .+|.+..-.
T Consensus       572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----~~~eG~lIK  646 (1080)
T KOG1408|consen  572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----RDHEGDLIK  646 (1080)
T ss_pred             hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-----ccCCCceEE
Confidence            8776444332223333322     356899999999999999999999999999999999999765     578788888


Q ss_pred             EEEcCCCCEEEEEcCcceEEeCC
Q 023643          257 ITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       257 ~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +..+|.|.|||+...|.++.++|
T Consensus       647 v~lDPSgiY~atScsdktl~~~D  669 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVD  669 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEE
Confidence            99999999999999999999886

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4e-23  Score=155.70  Aligned_cols=203  Identities=11%  Similarity=0.204  Sum_probs=165.4

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      .+.|+++.|+|    ...+|++++.||+++||.+....                 ...+..+.--..||.+.+|.|+|. 
T Consensus       213 ~~~I~sv~FHp----~~plllvaG~d~~lrifqvDGk~-----------------N~~lqS~~l~~fPi~~a~f~p~G~-  270 (514)
T KOG2055|consen  213 HGGITSVQFHP----TAPLLLVAGLDGTLRIFQVDGKV-----------------NPKLQSIHLEKFPIQKAEFAPNGH-  270 (514)
T ss_pred             cCCceEEEecC----CCceEEEecCCCcEEEEEecCcc-----------------ChhheeeeeccCccceeeecCCCc-
Confidence            47899999999    89999999999999999998642                 223344444567899999999987 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                      ..+++++....++.||+.+.+..+. ..+.+....                     .+....++|++++|+..+..|.|+
T Consensus       271 ~~i~~s~rrky~ysyDle~ak~~k~-~~~~g~e~~---------------------~~e~FeVShd~~fia~~G~~G~I~  328 (514)
T KOG2055|consen  271 SVIFTSGRRKYLYSYDLETAKVTKL-KPPYGVEEK---------------------SMERFEVSHDSNFIAIAGNNGHIH  328 (514)
T ss_pred             eEEEecccceEEEEeeccccccccc-cCCCCcccc---------------------hhheeEecCCCCeEEEcccCceEE
Confidence            5899999999999999965422211 111121111                     257788999999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643          185 CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES  264 (279)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  264 (279)
                      +.-..+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+||++...+++++...-       .-.-+++|.++++.
T Consensus       329 lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-------~v~gts~~~S~ng~  400 (514)
T KOG2055|consen  329 LLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-------SVHGTSLCISLNGS  400 (514)
T ss_pred             eehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-------ccceeeeeecCCCc
Confidence            99999999999998 67889999999999999999999999999999999999885321       11236778889999


Q ss_pred             EEEEEcCcceEEeCC
Q 023643          265 WLVRVRATNYVILFS  279 (279)
Q Consensus       265 ~l~~~~~d~~i~~wd  279 (279)
                      |||+||..|.|.|||
T Consensus       401 ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  401 YLATGSDSGIVNIYD  415 (514)
T ss_pred             eEEeccCcceEEEec
Confidence            999999999999997

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.6e-23  Score=148.01  Aligned_cols=217  Identities=14%  Similarity=0.185  Sum_probs=155.7

Q ss_pred             eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643           21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG  100 (279)
Q Consensus        21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  100 (279)
                      ..+|.+-|.++.|.+    .|+++|+++.|++|+|||.+.....               ..+....+.|.+.|..+.|.+
T Consensus         9 ~s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~---------------W~~Ts~Wrah~~Si~rV~WAh   69 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGT---------------WSCTSSWRAHDGSIWRVVWAH   69 (361)
T ss_pred             ccCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCc---------------eEEeeeEEecCCcEEEEEecC
Confidence            346888999999999    8999999999999999997543211               455677889999999999988


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeEEEec
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAIFSAA  178 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~  178 (279)
                      ..-++.+++++.|++++||.-....     ....+.+=.....+.+.           ...|+.+.|.|.  |-.|++++
T Consensus        70 PEfGqvvA~cS~Drtv~iWEE~~~~-----~~~~~~~Wv~~ttl~Ds-----------rssV~DV~FaP~hlGLklA~~~  133 (361)
T KOG2445|consen   70 PEFGQVVATCSYDRTVSIWEEQEKS-----EEAHGRRWVRRTTLVDS-----------RSSVTDVKFAPKHLGLKLAAAS  133 (361)
T ss_pred             ccccceEEEEecCCceeeeeecccc-----cccccceeEEEEEeecC-----------CcceeEEEecchhcceEEEEec
Confidence            6555699999999999999842110     00001011111111111           124899999994  55889999


Q ss_pred             CCCeEEEEecCC------CcEEEEee-------cCCcceEEEEEcCC---CcEEEEecCC-----CeEEEEeCCCCc-eE
Q 023643          179 GDSCAYCWDVES------SRIKMVFK-------GHSDYLHCIVARNS---TNQIVTGSED-----GTARIWDCKSGK-CI  236 (279)
Q Consensus       179 ~d~~i~i~d~~~------~~~~~~~~-------~~~~~i~~i~~~~~---~~~l~~~~~d-----~~i~vwd~~~~~-~~  236 (279)
                      .||.++||+...      ..+..+++       .+..+..|+.|+|.   ..+|+.|+.+     +.++||....+. ..
T Consensus       134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw  213 (361)
T KOG2445|consen  134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW  213 (361)
T ss_pred             cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence            999999998754      23333443       35667789999984   5678888766     478888765432 22


Q ss_pred             EEecCCccccccCcceeeeEEEEcCC----CCEEEEEcCcceEEeC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDAS----ESWLVRVRATNYVILF  278 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~~w  278 (279)
                      ..+     ..+.+|..+|+.++|.|+    ...||+++.|| |+||
T Consensus       214 ~kv-----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~  253 (361)
T KOG2445|consen  214 LKV-----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF  253 (361)
T ss_pred             eee-----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence            222     123789999999999996    36799999999 9987

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-23  Score=158.35  Aligned_cols=203  Identities=16%  Similarity=0.157  Sum_probs=162.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|.|+|||++..  .+.+.++.|...|+++.|.-    ...+||+++..|.|.|-.+.++                   .
T Consensus       100 ~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~----~DeyiAsvs~gGdiiih~~~t~-------------------~  154 (673)
T KOG4378|consen  100 SGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNN----TDEYIASVSDGGDIIIHGTKTK-------------------Q  154 (673)
T ss_pred             CceeeehhhHHH--HHhhhccCCcceeEEEEecC----CcceeEEeccCCcEEEEecccC-------------------c
Confidence            578999999954  55778899999999999999    8899999999999999999883                   3


Q ss_pred             ccccccCC-ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           82 PDGFLHGH-DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        82 ~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ....|... ...|.-+.|+|..+ .+|.+++.+|.|.+||+..   ..........|..                     
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g---~sp~~~~~~~HsA---------------------  209 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQG---MSPIFHASEAHSA---------------------  209 (673)
T ss_pred             cccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccC---CCcccchhhhccC---------------------
Confidence            33444432 34466899999877 6889999999999999752   2222333333333                     


Q ss_pred             CceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceEEE
Q 023643          161 ENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KCIKV  238 (279)
Q Consensus       161 ~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~  238 (279)
                      +...|+|+|... +|++.+.|..|.+||++..+....+. ...+...++|+++|.+|++|+..|.|..||+|.. .++.+
T Consensus       210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence            257899999655 77889999999999999777666665 5678999999999999999999999999999974 46666


Q ss_pred             ecCCccccccCcceeeeEEEEcCCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                      +        ..|...|++++|-|..
T Consensus       289 ~--------sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  289 R--------SAHDASVTRVAFQPSP  305 (673)
T ss_pred             e--------eecccceeEEEeeecc
Confidence            6        7888999999998764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=4.4e-24  Score=162.47  Aligned_cols=218  Identities=14%  Similarity=0.136  Sum_probs=168.0

Q ss_pred             CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |..+++|.-++...  ..+....+.  .-.|++...    ...++++|+..+.|+|||++.                   
T Consensus        56 dk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s----~S~y~~sgG~~~~Vkiwdl~~-------------------  110 (673)
T KOG4378|consen   56 DKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS----QSLYEISGGQSGCVKIWDLRA-------------------  110 (673)
T ss_pred             ceeEEEecccCCCCccceeeccccc--hHHHHhhhh----cceeeeccCcCceeeehhhHH-------------------
Confidence            45677776544321  122222222  334444444    457999999999999999996                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ....+.+++|+..|+++.++-...  +|++++..|.|.|..+.+...........+.                       
T Consensus       111 kl~hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-----------------------  165 (673)
T KOG4378|consen  111 KLIHRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-----------------------  165 (673)
T ss_pred             HHHhhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCccccceecCCCC-----------------------
Confidence            667788899999999999998887  9999999999999998654322221111111                       


Q ss_pred             CCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceE
Q 023643          160 PENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       160 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                       .|+-+.|+|..+ +|.+++.+|.|.+||+....++..+ +.|..+...|+|+|. ..+|++.+.|..|.+||.++.+..
T Consensus       166 -svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  166 -SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             -eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence             156788998766 6677899999999999988777765 569999999999995 678999999999999999988777


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+         ....+.+.++|.++|.+|++|+..|.|..||
T Consensus       245 ~~l---------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD  278 (673)
T KOG4378|consen  245 DRL---------TYSHPLSTVAFSECGTYLCAGNSKGELIAYD  278 (673)
T ss_pred             cee---------eecCCcceeeecCCceEEEeecCCceEEEEe
Confidence            776         3345789999999999999999999999987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=158.80  Aligned_cols=207  Identities=18%  Similarity=0.323  Sum_probs=160.9

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC-ccCeEEEEecC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH-DGPAYDVKFYG  100 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~  100 (279)
                      ..-+.+|.++||+.    +.+.||.+-.+|.|.+|++...                  .-....+.++ ...|.+++|++
T Consensus        22 d~~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e   79 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE   79 (691)
T ss_pred             eeeccceEEEEEec----cCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc
Confidence            34578999999999    7888999999999999999874                  3344455554 46799999996


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD  180 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  180 (279)
                      .+   .|.+.+.+|+|.-||+.+..   ........                      .+.|.+++.+|.+..+++|+.|
T Consensus        80 ~~---RLFS~g~sg~i~EwDl~~lk---~~~~~d~~----------------------gg~IWsiai~p~~~~l~Igcdd  131 (691)
T KOG2048|consen   80 GG---RLFSSGLSGSITEWDLHTLK---QKYNIDSN----------------------GGAIWSIAINPENTILAIGCDD  131 (691)
T ss_pred             CC---eEEeecCCceEEEEecccCc---eeEEecCC----------------------CcceeEEEeCCccceEEeecCC
Confidence            66   79999999999999986542   22222111                      1147999999999999999999


Q ss_pred             CeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643          181 SCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT  258 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  258 (279)
                      |.++.++...++...  .|....+.|.++.|+|++..|++|+.||.|++||..+++.+..+..+....-++...-|+++.
T Consensus       132 Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  132 GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL  211 (691)
T ss_pred             ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence            988888877665543  455567899999999999999999999999999999998887443322111133456788998


Q ss_pred             EcCCCCEEEEEcCcceEEeCC
Q 023643          259 LDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       259 ~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |-.++ .|++|..-|+|.+||
T Consensus       212 ~Lrd~-tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  212 FLRDS-TIASGDSAGTVTFWD  231 (691)
T ss_pred             EeecC-cEEEecCCceEEEEc
Confidence            88654 599999999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=1.5e-22  Score=154.35  Aligned_cols=233  Identities=15%  Similarity=0.202  Sum_probs=168.0

Q ss_pred             Cceeeecccccccccee-eeee-cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            3 GDSTNWDEDAYRKSILK-EREI-LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |.+.+|++.+....... .++. ...-|.|++|.+    +++ +++|.++|.|.||+..+                   .
T Consensus       222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e----ngd-viTgDS~G~i~Iw~~~~-------------------~  277 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE----NGD-VITGDSGGNILIWSKGT-------------------N  277 (626)
T ss_pred             ceEEEEEccCCceEEEeeccccccceEEEEEEEcC----CCC-EEeecCCceEEEEeCCC-------------------c
Confidence            67889998776432111 2222 236799999999    676 67999999999999987                   3


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC-----------
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH-----------  149 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  149 (279)
                      +..+....|.+.|.+++...+|.   |+||+.|..|..||-+..+......   .....++..+.....           
T Consensus       278 ~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~y~k~r~~el---Pe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  278 RISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDNYRKLRETEL---PEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             eEEeEeeecCCceEEEEEecCcc---EeecCccceEEeccccccccccccC---chhcCCeeEEecCCCcEEEeeccceE
Confidence            44444458999999999999994   7779999999999933211111100   111111211111111           


Q ss_pred             -------CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          150 -------KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       150 -------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                             .-....+.+..+...++.+|+.+++++++.|+.+++|+  ..+++.+.. -..+..|+.|+|.| .++.|...
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~  427 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTAT  427 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeecc
Confidence                   01111123344678899999999999999999999999  455555544 45778999999999 99999999


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      |...+.|.++...+..-        .. ..++++++|+|+|.+||.|+.|+.|++|
T Consensus       428 G~w~V~d~e~~~lv~~~--------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIH--------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             ceEEEEecccceeEEEE--------ec-CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            99999999885555443        33 7899999999999999999999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=3.1e-23  Score=156.07  Aligned_cols=244  Identities=16%  Similarity=0.161  Sum_probs=173.1

Q ss_pred             CCceeeeccccc--cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC---------
Q 023643            2 CGDSTNWDEDAY--RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS---------   70 (279)
Q Consensus         2 dG~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------   70 (279)
                      -|+|-+||+.+.  ...-+.-+..|..+|.++.|+|.   +...+.+.+.||+|++-|++.......+...         
T Consensus       209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~---n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~  285 (498)
T KOG4328|consen  209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA---NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSL  285 (498)
T ss_pred             CCcEEEEecCCCCCccCceEEeccCCccccceEecCC---ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeec
Confidence            388999998633  23445567889999999999995   8889999999999999999876544432221         


Q ss_pred             ---Ccccc----------eeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee
Q 023643           71 ---NSKVQ----------QLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL  133 (279)
Q Consensus        71 ---~~~~~----------~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  133 (279)
                         .+...          .++.    +.....+.-|...|.+|+++|... .+|+|+|.|++.+|||++...........
T Consensus       286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~ls  364 (498)
T KOG4328|consen  286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLS  364 (498)
T ss_pred             cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCccee
Confidence               11100          1111    233344566888999999999887 68999999999999999865333221111


Q ss_pred             ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC----CCcEEEEeecCCc------c
Q 023643          134 QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE----SSRIKMVFKGHSD------Y  203 (279)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~------~  203 (279)
                      .                     ..|...|.+..|+|.+..|++.+.|..|+|||..    .-.+...+. |..      .
T Consensus       365 t---------------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT  422 (498)
T KOG4328|consen  365 T---------------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLT  422 (498)
T ss_pred             c---------------------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccccc
Confidence            1                     1122247999999998889999999999999983    334455544 322      2


Q ss_pred             eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE-EEcCCCCEEEE-EcCcceEEeC
Q 023643          204 LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI-TLDASESWLVR-VRATNYVILF  278 (279)
Q Consensus       204 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~-~~~d~~i~~w  278 (279)
                      ....+|.|+..++++|-.-..|-|+|-..++.+..+..+.       ...|.++ .|+|-+..+++ ++..|.|+||
T Consensus       423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-------~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-------SSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-------ccccccceeecccccceeccCCccceEEEE
Confidence            3345799999999999999999999988888777764321       1234443 69998884554 4567889887

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=7.4e-23  Score=159.04  Aligned_cols=247  Identities=15%  Similarity=0.160  Sum_probs=176.7

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc---------ccCCcccceee---------
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL---------GLSNSKVQQLL---------   78 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------~~~~~~~~~~~---------   78 (279)
                      +-..+.+|++.|.++...|    .|.+||+|+.||+|+||.+.++.+...+         .+.+.....++         
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp----~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDP----SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             eeeeEeccCCeEEEEEecC----CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence            3456789999999999999    8999999999999999999988766411         11111100000         


Q ss_pred             ---------------------------------e---------ccccccccCCccCeEEEEecCCCCceEEEEeeCC---
Q 023643           79 ---------------------------------G---------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD---  113 (279)
Q Consensus        79 ---------------------------------~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---  113 (279)
                                                       .         ..-++..-.|..+|..+.|+..|.  ||++...+   
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD--YlatV~~~~~~  545 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD--YLATVMPDSGN  545 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc--eEEEeccCCCc
Confidence                                             0         011123334778899999999998  99988764   


Q ss_pred             CcEEEeecCCCccCcceeee--------ccCcccceEEeecCCCCCcccc---------CCCCCCceeEEEcCCCCeEEE
Q 023643          114 GRICGWRWKEFTESKVPINL--------QGNHVKPVLDLVNHQHKGPWGA---------LSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus       114 g~i~iw~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      ..|.|+++...... ..+..        .-+...+.+-+.....-..++.         ......|..++.+|.|..|+.
T Consensus       546 ~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             ceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence            46889998643222 21111        1122222222223333222222         334456899999999999999


Q ss_pred             ecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC------CC---ceEEEecCCcccc
Q 023643          177 AAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK------SG---KCIKVIDPVKDKQ  246 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~------~~---~~~~~~~~~~~~~  246 (279)
                      |+.|+.+..+|+.-. ++.++++.|...++.++|++.-.++++|+.||++.||.-.      ..   -++..+       
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L-------  697 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL-------  697 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec-------
Confidence            999999999999754 6778889999999999999999999999999999998532      11   133444       


Q ss_pred             ccCccee----eeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          247 LKGVISC----VSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       247 ~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                       .+|...    |..+.|+|...+|+++++||+|++|
T Consensus       698 -~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  698 -RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             566544    8899999999999999999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4e-23  Score=154.92  Aligned_cols=217  Identities=15%  Similarity=0.158  Sum_probs=156.8

Q ss_pred             EEEEECCC---CCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee--eccccccccCCccCeEEEEecCCCC
Q 023643           29 FRTVWGPS---KDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL--GIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        29 ~~~~~~~~---~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      .|++|...   ....|+++|.|+.|..|.|||+.-.....+.-.-.....+..  .++.-....+|+..|.+|+|+..-.
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            45666432   124578999999999999999975433322111111111110  0222334457999999999998766


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCe
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSC  182 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~  182 (279)
                       +.|+|||.|.+|++||+.+.+....   +. ++..                     .|.++.|+|.. ..|++|+.|++
T Consensus       257 -nVLaSgsaD~TV~lWD~~~g~p~~s---~~-~~~k---------------------~Vq~l~wh~~~p~~LLsGs~D~~  310 (463)
T KOG0270|consen  257 -NVLASGSADKTVKLWDVDTGKPKSS---IT-HHGK---------------------KVQTLEWHPYEPSVLLSGSYDGT  310 (463)
T ss_pred             -eeEEecCCCceEEEEEcCCCCccee---hh-hcCC---------------------ceeEEEecCCCceEEEeccccce
Confidence             6999999999999999986533222   21 1222                     37899999854 48899999999


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEc
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      +.+.|.|........-.-.+.|-.++|.|. ...++++..||+|+-+|+|.. +++.++        .+|...|++++++
T Consensus       311 V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~--------~AHd~~ISgl~~n  382 (463)
T KOG0270|consen  311 VALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL--------KAHDDEISGLSVN  382 (463)
T ss_pred             EEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE--------EeccCCcceEEec
Confidence            999999953222222124567889999995 567888899999999999985 888888        7999999999998


Q ss_pred             CCC-CEEEEEcCcceEEeCC
Q 023643          261 ASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       261 ~~~-~~l~~~~~d~~i~~wd  279 (279)
                      +.- .+|+|++.|+.|.+|+
T Consensus       383 ~~~p~~l~t~s~d~~Vklw~  402 (463)
T KOG0270|consen  383 IQTPGLLSTASTDKVVKLWK  402 (463)
T ss_pred             CCCCcceeeccccceEEEEe
Confidence            854 5688999999999995

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=1.3e-22  Score=144.54  Aligned_cols=216  Identities=17%  Similarity=0.210  Sum_probs=156.8

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCC-------CcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCc
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSD-------GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHD   90 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~   90 (279)
                      +.+..|.++|+.++-+|.   +...|+++..+       ..+.||.+.......          .....+.+..+. .+-
T Consensus        57 kvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S----------~~~tlE~v~~Ldteav  123 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS----------NSSTLECVASLDTEAV  123 (370)
T ss_pred             hhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccccCcc----------ccchhhHhhcCCHHHh
Confidence            466778899999999994   77888887553       246899987532210          111134445554 456


Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-  169 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  169 (279)
                      +.|.|+.|.|++.  .+++-. |..|.+|++.................                   .....++-+|+| 
T Consensus       124 g~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------------~~~~ftsg~WspH  181 (370)
T KOG1007|consen  124 GKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------------MRHSFTSGAWSPH  181 (370)
T ss_pred             CceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeeccccccc-------------------ccceecccccCCC
Confidence            7899999999987  777766 89999999976543211111111000                   001136678998 


Q ss_pred             -CCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCc-eEEEecCCccc
Q 023643          170 -QGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGK-CIKVIDPVKDK  245 (279)
Q Consensus       170 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~  245 (279)
                       +++.+++. .|+++..||+++.+....++ .|...|+.+.|+|+. .+|++|+.||.|++||.|..+ ++..+      
T Consensus       182 Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el------  254 (370)
T KOG1007|consen  182 HDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL------  254 (370)
T ss_pred             CccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc------
Confidence             66677655 48999999999987777664 588889999999974 568999999999999998754 55666      


Q ss_pred             cccCcceeeeEEEEcCC-CCEEEEEcCcceEEeC
Q 023643          246 QLKGVISCVSCITLDAS-ESWLVRVRATNYVILF  278 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~w  278 (279)
                        .+|..+|+++.|+|. .++|++|+.|..|.+|
T Consensus       255 --~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Ls  286 (370)
T KOG1007|consen  255 --PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLS  286 (370)
T ss_pred             --CCCceEEEEEEecCccceEEEecCCCceeEEE
Confidence              789999999999995 6788899999999886

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=6.4e-23  Score=151.89  Aligned_cols=212  Identities=18%  Similarity=0.147  Sum_probs=161.1

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ....+|.++|..++|+|-   +...||+|+.|.+|.||++........+            .+++..+.+|...|.-+.|
T Consensus        75 P~v~GHt~~vLDi~w~Pf---nD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~w  139 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPF---NDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQW  139 (472)
T ss_pred             CCccCccccccccccCcc---CCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEee
Confidence            356789999999999995   8889999999999999999764322221            4677889999999999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      +|... +.|+|++.|.+|.+|++.++.   ....+.  |                     ...|.+++|+.+|.+|++.+
T Consensus       140 HPtA~-NVLlsag~Dn~v~iWnv~tge---ali~l~--h---------------------pd~i~S~sfn~dGs~l~Ttc  192 (472)
T KOG0303|consen  140 HPTAP-NVLLSAGSDNTVSIWNVGTGE---ALITLD--H---------------------PDMVYSMSFNRDGSLLCTTC  192 (472)
T ss_pred             cccch-hhHhhccCCceEEEEeccCCc---eeeecC--C---------------------CCeEEEEEeccCCceeeeec
Confidence            99876 699999999999999987542   222222  1                     12379999999999999999


Q ss_pred             CCCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEec---CCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGS---EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      .|..|+|||.++++.+.+-.+|.+. -..+.|-.++..+-+|-   .+..+.+||....+.-..+..      -...+.|
T Consensus       193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e------lDtSnGv  266 (472)
T KOG0303|consen  193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE------LDTSNGV  266 (472)
T ss_pred             ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE------eccCCce
Confidence            9999999999999999988888753 34455667788555443   578899999876433222211      1333456


Q ss_pred             eEEEEcCCCCEEE-EEcCcceEEeC
Q 023643          255 SCITLDASESWLV-RVRATNYVILF  278 (279)
Q Consensus       255 ~~~~~~~~~~~l~-~~~~d~~i~~w  278 (279)
                      .---|++|...++ +|-.|+.|+-|
T Consensus       267 l~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  267 LLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             EEeeecCCCCEEEEEecCCcceEEE
Confidence            6667888877665 56679999876

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=4.1e-23  Score=159.23  Aligned_cols=219  Identities=18%  Similarity=0.272  Sum_probs=167.5

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      ++..|...|..++|.|    ....|++++.||+|++|+++.......           ...+++.+|++|.++|.|++..
T Consensus       289 tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~  353 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVP  353 (577)
T ss_pred             eeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEec
Confidence            6778999999999999    788899999999999999944111101           1168889999999999999999


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      +++.  .+++|+.||+|+.|++......     ...+....+..          ....+..+++.+++++....|++++.
T Consensus       354 ~n~~--~~ysgg~Dg~I~~w~~p~n~dp-----~ds~dp~vl~~----------~l~Ghtdavw~l~~s~~~~~Llscs~  416 (577)
T KOG0642|consen  354 SNGE--HCYSGGIDGTIRCWNLPPNQDP-----DDSYDPSVLSG----------TLLGHTDAVWLLALSSTKDRLLSCSS  416 (577)
T ss_pred             CCce--EEEeeccCceeeeeccCCCCCc-----ccccCcchhcc----------ceeccccceeeeeecccccceeeecC
Confidence            9998  9999999999999986421100     00000000000          01122335789999998889999999


Q ss_pred             CCeEEEEecCCCcEEEEe---------------------------------------------ec-------CCcceEEE
Q 023643          180 DSCAYCWDVESSRIKMVF---------------------------------------------KG-------HSDYLHCI  207 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~---------------------------------------------~~-------~~~~i~~i  207 (279)
                      ||+++.|+.....+ .+|                                             ..       -...+..+
T Consensus       417 DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v  495 (577)
T KOG0642|consen  417 DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV  495 (577)
T ss_pred             CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence            99999998764333 110                                             00       01235567


Q ss_pred             EEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          208 VARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       208 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .++|.....+++..|+.|+++|..+++.+...        ..|...++++++.|+|.+|++++.|+.+++|.
T Consensus       496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~--------~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSM--------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             EecCCCCeeEecccCCceecccccccccchhe--------eeccceecceeecCCCceEEeecCCceeehhh
Confidence            77888889999999999999999999999887        78889999999999999999999999999984

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=1.2e-21  Score=154.59  Aligned_cols=252  Identities=17%  Similarity=0.167  Sum_probs=180.0

Q ss_pred             CCCceeeecccccc--c---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643            1 MCGDSTNWDEDAYR--K---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         1 ~dG~v~iw~~~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      ||.++-+|.++...  .   ..+-...+.....+...|+|    +++.+++-+..|-.++|.......            
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~----n~~~ii~~g~~Gg~hlWkt~d~~~------------  350 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP----NSNVIIAHGRTGGFHLWKTKDKTF------------  350 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC----CCCEEEEecccCcEEEEeccCccc------------
Confidence            68899999876652  1   11223334456789999999    899999999999999999322100            


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCc-c-------------Cc-------ceeeec
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFT-E-------------SK-------VPINLQ  134 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~-------------~~-------~~~~~~  134 (279)
                          ......+.||.+.|.++.|.|.|.  +|+++|.|.+-|+|-.-..+ +             ..       ...-..
T Consensus       351 ----w~~~~~iSGH~~~V~dv~W~psGe--flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS  424 (764)
T KOG1063|consen  351 ----WTQEPVISGHVDGVKDVDWDPSGE--FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS  424 (764)
T ss_pred             ----eeeccccccccccceeeeecCCCC--EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence                345566789999999999999998  99999999999988643000 0             00       000000


Q ss_pred             cCccc--ceE---------------------------------EeecCC------CCCcc--------------------
Q 023643          135 GNHVK--PVL---------------------------------DLVNHQ------HKGPW--------------------  153 (279)
Q Consensus       135 ~~~~~--~~~---------------------------------~~~~~~------~~~~~--------------------  153 (279)
                      +...+  .++                                 .+.+..      ..+..                    
T Consensus       425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP  504 (764)
T KOG1063|consen  425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP  504 (764)
T ss_pred             cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence            00000  000                                 000000      00000                    


Q ss_pred             ---------------ccCCCCCCceeEEEcCCCCeEEEecCC-----CeEEEEecCCCcEEEEeecCCcceEEEEEcCCC
Q 023643          154 ---------------GALSPVPENNAIAVDPQGGAIFSAAGD-----SCAYCWDVESSRIKMVFKGHSDYLHCIVARNST  213 (279)
Q Consensus       154 ---------------~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~  213 (279)
                                     ..+.|...|.+++.+|+++++++++..     ..|++|+..+...+..+.+|+-.|+.++|+||+
T Consensus       505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg  584 (764)
T KOG1063|consen  505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG  584 (764)
T ss_pred             hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence                           003345679999999999999998764     469999999999999999999999999999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCce-EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          214 NQIVTGSEDGTARIWDCKSGKC-IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       214 ~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++|++.|.|+++.+|....... ...+..     .+.|+.-|+.+.|+|++.+++|+|.|.+|.+|.
T Consensus       585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-----~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  585 RYLLSVSRDRTVSLYEVQEDIKDEFRFAC-----LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             cEEEEeecCceEEeeeeecccchhhhhcc-----ccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            9999999999999998754321 111111     278999999999999999999999999999994

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.4e-22  Score=155.07  Aligned_cols=223  Identities=18%  Similarity=0.286  Sum_probs=163.9

Q ss_pred             CCCceeeecccc------ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643            1 MCGDSTNWDEDA------YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV   74 (279)
Q Consensus         1 ~dG~v~iw~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   74 (279)
                      .||++++|+++.      ...+.+.++.+|.++|.|+++.+    ++..+.+|+.||+|+.|++... .. .+..     
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n-~d-p~ds-----  382 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPN-QD-PDDS-----  382 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCC-CC-cccc-----
Confidence            379999999832      12345678999999999999999    9999999999999999987621 11 0000     


Q ss_pred             ceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccc-eEEeecCC-----
Q 023643           75 QQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKP-VLDLVNHQ-----  148 (279)
Q Consensus        75 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----  148 (279)
                        .--......+.||.+.|+.+++++...  .|++++.||++++|+......  +.+.....+..+ ..++....     
T Consensus       383 --~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  383 --YDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             --cCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhh
Confidence              000233457789999999999999887  899999999999999754322  111111111111 11110000     


Q ss_pred             ------CC----------------CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE
Q 023643          149 ------HK----------------GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC  206 (279)
Q Consensus       149 ------~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  206 (279)
                            ..                ...........+.-+.++|.....+++..|+.|+++|..+++++.....|...+++
T Consensus       457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts  536 (577)
T KOG0642|consen  457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS  536 (577)
T ss_pred             hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence                  00                00000111245778889999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          207 IVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       207 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +++.|+|.+|++++.|+.+++|.+....++....
T Consensus       537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             eeecCCCceEEeecCCceeehhhccchheeeccc
Confidence            9999999999999999999999998877777663

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=142.51  Aligned_cols=227  Identities=10%  Similarity=0.073  Sum_probs=159.5

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDV   96 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~   96 (279)
                      ...+++|.+.|+++.|..    + .+|.+|..-|.|++|++.+                   .+....++ .|...|+.+
T Consensus         7 ~fvLRp~~~~v~s~~fqa----~-~rL~sg~~~G~V~~w~lqt-------------------~r~~~~~r~~g~~~it~l   62 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQA----N-ERLMSGLSVGIVKMWVLQT-------------------ERDLPLIRLFGRLFITNL   62 (323)
T ss_pred             eeEeccccchheehhhcc----c-hhhhcccccceEEEEEeec-------------------Cccchhhhhhccceeece
Confidence            445678999999999988    4 4589999999999999998                   56667777 578889999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCcc-----------CcceeeeccCcccceEEeecCCCC----------Cc--c
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTE-----------SKVPINLQGNHVKPVLDLVNHQHK----------GP--W  153 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~  153 (279)
                      .-.|++   .+.+-+.|+.+.+|++.....           ..+...+..+.....+.+..+...          .+  .
T Consensus        63 q~~p~d---~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv  139 (323)
T KOG0322|consen   63 QSIPND---SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV  139 (323)
T ss_pred             eecCCc---chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcccee
Confidence            999985   699999999999999864210           001111111100000000000000          00  0


Q ss_pred             -----ccCCCCCCceeEEEcCC-CC--eEEEecCCCeEEEEecCCCcEEEE----------eecCCc-------------
Q 023643          154 -----GALSPVPENNAIAVDPQ-GG--AIFSAAGDSCAYCWDVESSRIKMV----------FKGHSD-------------  202 (279)
Q Consensus       154 -----~~~~~~~~i~~~~~~~~-~~--~l~~~~~d~~i~i~d~~~~~~~~~----------~~~~~~-------------  202 (279)
                           ......+.+.|..+..+ +.  ++++|..+|.+.+||+.++..+-.          ...|..             
T Consensus       140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r  219 (323)
T KOG0322|consen  140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR  219 (323)
T ss_pred             EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence                 00112345666665432 22  567788999999999987622211          111222             


Q ss_pred             ---------------------------------ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          203 ---------------------------------YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       203 ---------------------------------~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                                                       .|..+..-||++.+++++.|+.||||..++.+++..+        ..
T Consensus       220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL--------ky  291 (323)
T KOG0322|consen  220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL--------KY  291 (323)
T ss_pred             CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh--------hh
Confidence                                             3445666788899999999999999999999999998        78


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |...|++++|+|+...+|+++.|+.|.+|+
T Consensus       292 Hsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             hhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            899999999999999999999999999996

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.8e-22  Score=142.56  Aligned_cols=166  Identities=13%  Similarity=0.134  Sum_probs=120.2

Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCc-----cCcceeeeccCcccceEEeecCCCCCccc
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFT-----ESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                      ++.+..+......-+..+.+|+|.  ++++++.-.-|++|.+--.+     +......++++                  
T Consensus       218 Gq~L~~idtnq~~n~~aavSP~GR--Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------------------  277 (420)
T KOG2096|consen  218 GQLLQSIDTNQSSNYDAAVSPDGR--FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------------------  277 (420)
T ss_pred             CceeeeeccccccccceeeCCCCc--EEEEecCCCCceEEEEEeccCcchhhhhhhheeccc------------------
Confidence            344444444455556778899998  99999999999999963211     11222233332                  


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-------CcEEEEee----cCCcceEEEEEcCCCcEEEEecCCC
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-------SRIKMVFK----GHSDYLHCIVARNSTNQIVTGSEDG  223 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~d~  223 (279)
                          ...|..++|+++...+++.+.||++++||++-       .+.+.+..    ...+....++++|.|+.|+.+ ...
T Consensus       278 ----~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs  352 (420)
T KOG2096|consen  278 ----QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGS  352 (420)
T ss_pred             ----hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCC
Confidence                22489999999999999999999999999862       12222221    112334478999999988765 466


Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+++|..++|+....++       ..|...|++++|+++|++++|++ |..++++
T Consensus       353 ~l~~~~se~g~~~~~~e-------~~h~~~Is~is~~~~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  353 DLKVFASEDGKDYPELE-------DIHSTTISSISYSSDGKYIATCG-DRYVRVI  399 (420)
T ss_pred             ceEEEEcccCccchhHH-------HhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence            79999999998887775       68899999999999999999986 4556553

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=1.7e-21  Score=138.95  Aligned_cols=212  Identities=12%  Similarity=0.195  Sum_probs=153.5

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      .+-+.|.|+.|.|    ++..+++-. |..|.+|++........             .-+...-.+|+...++-+|+|..
T Consensus       121 eavg~i~cvew~P----ns~klasm~-dn~i~l~~l~ess~~va-------------ev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  121 EAVGKINCVEWEP----NSDKLASMD-DNNIVLWSLDESSKIVA-------------EVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             HHhCceeeEEEcC----CCCeeEEec-cCceEEEEcccCcchhe-------------eecccccccccceecccccCCCC
Confidence            3456899999999    889888876 77999999987533110             00011112366678889999966


Q ss_pred             CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCC
Q 023643          103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDS  181 (279)
Q Consensus       103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~  181 (279)
                      +++.+++.+ |++++.||+++......+..-   |..                     .|..+.|+|+-+ +|++++.||
T Consensus       183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA---Hgq---------------------~vrdlDfNpnkq~~lvt~gDdg  237 (370)
T KOG1007|consen  183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDA---HGQ---------------------RVRDLDFNPNKQHILVTCGDDG  237 (370)
T ss_pred             ccceEEEeC-CCcEEEEEccchhhhcchhhh---hcc---------------------eeeeccCCCCceEEEEEcCCCc
Confidence            655777765 899999999865333332222   222                     268899999876 678899999


Q ss_pred             eEEEEecCC-CcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEec-------------------
Q 023643          182 CAYCWDVES-SRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVID-------------------  240 (279)
Q Consensus       182 ~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~-------------------  240 (279)
                      .|++||++. ..++.++.+|..+|+++.|+|. .++|++|+.|..|.+|...+-.....+.                   
T Consensus       238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp  317 (370)
T KOG1007|consen  238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP  317 (370)
T ss_pred             cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence            999999986 5688999999999999999995 6789999999999999764322111111                   


Q ss_pred             --CCccccccCcceeeeEEEEcCCCCE-EEEEcCcceEEe
Q 023643          241 --PVKDKQLKGVISCVSCITLDASESW-LVRVRATNYVIL  277 (279)
Q Consensus       241 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~  277 (279)
                        ......+..|...|.+++|+.-..+ +|+-+.||.+.|
T Consensus       318 L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  318 LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             ccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence              0011255789999999999986665 556699998865

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=2.8e-21  Score=155.25  Aligned_cols=254  Identities=15%  Similarity=0.179  Sum_probs=177.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ++.+.+|+++... .....+ .-..+|+++.|+|.   +++++|.|..+|+|.+||+........             ..
T Consensus       221 ~~~~~vW~~~~p~-~Pe~~~-~~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~  282 (555)
T KOG1587|consen  221 DGVLLVWSLKNPN-TPELVL-ESPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SG  282 (555)
T ss_pred             CceEEEEecCCCC-CceEEE-ecCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCC-------------cc
Confidence            3568899988762 122222 24588999999995   899999999999999999987532110             01


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee----------------------------
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL----------------------------  133 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~----------------------------  133 (279)
                      .......|..++..+.|..+..+.-|++++.||.|..|+++...........                            
T Consensus       283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~  362 (555)
T KOG1587|consen  283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH  362 (555)
T ss_pred             cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence            1122235899999999987655335999999999999998764321111100                            


Q ss_pred             --ccCcccceEEeecCCCC-C-------ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-CCcEEEEeecCCc
Q 023643          134 --QGNHVKPVLDLVNHQHK-G-------PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRIKMVFKGHSD  202 (279)
Q Consensus       134 --~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~  202 (279)
                        -|...+.++.....+.. .       ......+.+.|+++.++|-+..++..+.|.+++||... ...++..+..+..
T Consensus       363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~  442 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD  442 (555)
T ss_pred             EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc
Confidence              00111111111111111 1       11334567789999999988766666669999999988 7788888888888


Q ss_pred             ceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          203 YLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       203 ~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+++++|||. ...++++..||.|.+||+...........      ..+....+.+.|+++|+.|++|...|.+++|+
T Consensus       443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~------~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ------KVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc------cccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            9999999995 57889999999999999976543333211      23355678888999999999999999999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.7e-22  Score=147.60  Aligned_cols=193  Identities=13%  Similarity=0.141  Sum_probs=146.3

Q ss_pred             EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643           29 FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL  108 (279)
Q Consensus        29 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  108 (279)
                      ..++|++    ++..|++|+.||++|||+..+                   ...+.....|.+.|.++.|+|+++  +|+
T Consensus       148 k~vaf~~----~gs~latgg~dg~lRv~~~Ps-------------------~~t~l~e~~~~~eV~DL~FS~dgk--~la  202 (398)
T KOG0771|consen  148 KVVAFNG----DGSKLATGGTDGTLRVWEWPS-------------------MLTILEEIAHHAEVKDLDFSPDGK--FLA  202 (398)
T ss_pred             eEEEEcC----CCCEeeeccccceEEEEecCc-------------------chhhhhhHhhcCccccceeCCCCc--EEE
Confidence            6789999    899999999999999999776                   455666777999999999999998  999


Q ss_pred             EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC---C--eEEEecCCCeE
Q 023643          109 SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG---G--AIFSAAGDSCA  183 (279)
Q Consensus       109 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~l~~~~~d~~i  183 (279)
                      +-+.| ..+||+.++.............                       .....+.|+.++   .  .++....-+.|
T Consensus       203 sig~d-~~~VW~~~~g~~~a~~t~~~k~-----------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v  258 (398)
T KOG0771|consen  203 SIGAD-SARVWSVNTGAALARKTPFSKD-----------------------EMFSSCRFSVDNAQETLRLAASQFPGGGV  258 (398)
T ss_pred             EecCC-ceEEEEeccCchhhhcCCcccc-----------------------hhhhhceecccCCCceEEEEEecCCCCce
Confidence            99999 9999998765211111111110                       013456676655   2  22333345667


Q ss_pred             EEEecCCCcE-----EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643          184 YCWDVESSRI-----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT  258 (279)
Q Consensus       184 ~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  258 (279)
                      +.||+...+-     .++.......|.+++.+++|++++.|+.||.|.|++..+.+.++.++       +.|...|+.+.
T Consensus       259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-------~aH~~~VT~lt  331 (398)
T KOG0771|consen  259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-------EAHLGFVTGLT  331 (398)
T ss_pred             eEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh-------hhheeeeeeEE
Confidence            7777654321     11222234579999999999999999999999999999999888886       78999999999


Q ss_pred             EcCCCCEEEEEcCcceEEe
Q 023643          259 LDASESWLVRVRATNYVIL  277 (279)
Q Consensus       259 ~~~~~~~l~~~~~d~~i~~  277 (279)
                      |+|+.+++++.+.|....+
T Consensus       332 F~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  332 FSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             EcCCcCcccccccCCceeE
Confidence            9999999999888877655

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.4e-22  Score=168.00  Aligned_cols=206  Identities=18%  Similarity=0.292  Sum_probs=157.7

Q ss_pred             ccceEEEEECCCCCCCCC----EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643           25 TRTVFRTVWGPSKDGSPD----TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG  100 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  100 (279)
                      ....+.|+|.+    .+.    +||.|..||.|.+||...-.....             ...+.....|.+.|..+.|++
T Consensus        64 ~~rF~kL~W~~----~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~-------------~~~la~~~~h~G~V~gLDfN~  126 (1049)
T KOG0307|consen   64 SNRFNKLAWGS----YGSHSHGLIAGGLEDGNIVLYDPASIIANAS-------------EEVLATKSKHTGPVLGLDFNP  126 (1049)
T ss_pred             cccceeeeecc----cCCCccceeeccccCCceEEecchhhccCcc-------------hHHHhhhcccCCceeeeeccc
Confidence            46788999998    444    488999999999999876210000             345667778999999999999


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC-CCeEEEecC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ-GGAIFSAAG  179 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  179 (279)
                      ... ++|++|+.||.|.|||++.....   ..+..                    ......|.+++|+.. ...|++++.
T Consensus       127 ~q~-nlLASGa~~geI~iWDlnn~~tP---~~~~~--------------------~~~~~eI~~lsWNrkvqhILAS~s~  182 (1049)
T KOG0307|consen  127 FQG-NLLASGADDGEILIWDLNKPETP---FTPGS--------------------QAPPSEIKCLSWNRKVSHILASGSP  182 (1049)
T ss_pred             cCC-ceeeccCCCCcEEEeccCCcCCC---CCCCC--------------------CCCcccceEeccchhhhHHhhccCC
Confidence            876 69999999999999999753221   11111                    112224899999974 447888999


Q ss_pred             CCeEEEEecCCCcEEEEeecCCc--ceEEEEEcCCC-cEEEEecCCC---eEEEEeCCCC-ceEEEecCCccccccCcce
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSD--YLHCIVARNST-NQIVTGSEDG---TARIWDCKSG-KCIKVIDPVKDKQLKGVIS  252 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~-~~l~~~~~d~---~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~  252 (279)
                      +|.+.|||++..+++-.+..+..  .+..++|+|+. ..|++++.|.   .|.+||+|.- .+++++        .+|..
T Consensus       183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~--------~~H~~  254 (1049)
T KOG0307|consen  183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL--------EGHQR  254 (1049)
T ss_pred             CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh--------ccccc
Confidence            99999999999988887775554  46789999974 5566666554   4999999864 455666        68999


Q ss_pred             eeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          253 CVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       253 ~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      .|.++.|++.+ ++|++++.|+.|.+|+
T Consensus       255 GilslsWc~~D~~lllSsgkD~~ii~wN  282 (1049)
T KOG0307|consen  255 GILSLSWCPQDPRLLLSSGKDNRIICWN  282 (1049)
T ss_pred             ceeeeccCCCCchhhhcccCCCCeeEec
Confidence            99999999966 8899999999999996

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=1.9e-21  Score=152.75  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=99.8

Q ss_pred             CceeEEEcC-CCCeEEEecCCCeEEEEecCCC-------cEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 023643          161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESS-------RIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~  231 (279)
                      .|+.+.|+| |...|++++.||.|++|.+..+       .+...+..|...|+.+.|+| -...|++++.|.+|++||++
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            466788988 6668999999999999998753       45567888999999999999 47889999999999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++....+        .+|...|..++|+|+|+.+|+.+.||+|++|.
T Consensus       709 ~~~~~~~l--------~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  709 NAKLYSRL--------VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             hhhhhhee--------ccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            99998888        79999999999999999999999999999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=1.7e-22  Score=146.26  Aligned_cols=213  Identities=16%  Similarity=0.217  Sum_probs=157.2

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      .|.+..+.++|+-+......++|+|+.-|.|+|.|+.+                   .+....+.+|...|+.+.++|..
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-------------------~~~~~~~~ghG~sINeik~~p~~  147 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-------------------GQCSKNYRGHGGSINEIKFHPDR  147 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-------------------hhhccceeccCccchhhhcCCCC
Confidence            36778888999864333356889999999999999998                   67888899999999999999998


Q ss_pred             CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCe
Q 023643          103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSC  182 (279)
Q Consensus       103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  182 (279)
                      . ++++++|.|.+||+|++++.   .++..+.+-                   ..|...|.++.|++++.++++++.|.+
T Consensus       148 ~-qlvls~SkD~svRlwnI~~~---~Cv~VfGG~-------------------egHrdeVLSvD~~~~gd~i~ScGmDhs  204 (385)
T KOG1034|consen  148 P-QLVLSASKDHSVRLWNIQTD---VCVAVFGGV-------------------EGHRDEVLSVDFSLDGDRIASCGMDHS  204 (385)
T ss_pred             C-cEEEEecCCceEEEEeccCC---eEEEEeccc-------------------ccccCcEEEEEEcCCCCeeeccCCcce
Confidence            7 69999999999999998754   344443331                   112224899999999999999999999


Q ss_pred             EEEEecCCCcEEE----------------------------EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC-CCC
Q 023643          183 AYCWDVESSRIKM----------------------------VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC-KSG  233 (279)
Q Consensus       183 i~i~d~~~~~~~~----------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~-~~~  233 (279)
                      |++|++...+...                            +-.-|..+|.|+.|-  |+++++-|.++.|..|.. +-+
T Consensus       205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~  282 (385)
T KOG1034|consen  205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLE  282 (385)
T ss_pred             EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhh
Confidence            9999998321100                            112367778888876  689999999999999987 333


Q ss_pred             ceEEEecCCcc-----ccccCcceeeeE--EEEcCCCCEEEEEcCcceEEeCC
Q 023643          234 KCIKVIDPVKD-----KQLKGVISCVSC--ITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 ~~~~~~~~~~~-----~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.+..+.+++.     ..+.-....|+-  .+|+|-++.||.|...|.|.+||
T Consensus       283 e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwd  335 (385)
T KOG1034|consen  283 ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWD  335 (385)
T ss_pred             hhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEE
Confidence            33333322221     111222333444  45667789999999999999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.1e-21  Score=138.63  Aligned_cols=238  Identities=13%  Similarity=0.214  Sum_probs=165.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc--------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS--------   72 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------   72 (279)
                      +||.|-|||+.+..  .-+.+.+|..+|++++||+    +|+.|++++.|..|.+||+..+.....+.+...        
T Consensus        43 ~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~----dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp  116 (405)
T KOG1273|consen   43 ANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSR----DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP  116 (405)
T ss_pred             cCCcEEEEEccccc--hhhhhhccccceeEEEecC----CCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeecc
Confidence            58999999999875  3567889999999999999    999999999999999999998765543333222        


Q ss_pred             -ccceeee------------ccccccccCCc------cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee
Q 023643           73 -KVQQLLG------------IEPDGFLHGHD------GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL  133 (279)
Q Consensus        73 -~~~~~~~------------~~~~~~~~~h~------~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  133 (279)
                       +....+.            ..+.+.+-...      ....+..|.+.|+  ++++|...|.+-+++..+.   ++...+
T Consensus       117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv~~a~t~---e~vas~  191 (405)
T KOG1273|consen  117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLVYDAETL---ECVASF  191 (405)
T ss_pred             ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC--EEEEecCcceEEEEecchh---eeeeee
Confidence             1111110            11111111100      0111234666676  8999998999999987653   222222


Q ss_pred             ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-------c--EEEEeec--CCc
Q 023643          134 QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-------R--IKMVFKG--HSD  202 (279)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~--~~~~~~~--~~~  202 (279)
                      +-...                     ..|..+.++..++.|+.-+.|..|+.|+++.-       +  +.+.++.  ...
T Consensus       192 rits~---------------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  192 RITSV---------------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             eechh---------------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            21111                     13678899999999999999999999998621       1  1122211  223


Q ss_pred             ceEEEEEcCCCcEEEEecC-CCeEEEEeCCCCceEEEecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          203 YLHCIVARNSTNQIVTGSE-DGTARIWDCKSGKCIKVIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .-.+++|+.+|.|+++++. ...++||.-..|.+++.+.        |.. .....+.|+|-...+++- ..|.+++|.
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh--------G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH--------GTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeec--------CCchhheeecccccceeeeeec-cCCceEEEE
Confidence            4467899999999988774 4459999999999999994        444 556788999998888887 778999984

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=2.7e-20  Score=138.46  Aligned_cols=181  Identities=18%  Similarity=0.240  Sum_probs=128.5

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ..+|..+.|.+.   ..+.||+|+.|..|++|.++.......-          ...+....+..|...|+++.|+|+++ 
T Consensus        13 ~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~ge-   78 (434)
T KOG1009|consen   13 HEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGE-   78 (434)
T ss_pred             CCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcC-
Confidence            478999999993   4449999999999999999874322110          11345667888999999999999998 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                       +|+||+.+|.|.+|.....................+......         .+...|..++|+|++..+++++.|..++
T Consensus        79 -lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr---------~h~~diydL~Ws~d~~~l~s~s~dns~~  148 (434)
T KOG1009|consen   79 -LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR---------GHRDDIYDLAWSPDSNFLVSGSVDNSVR  148 (434)
T ss_pred             -eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec---------ccccchhhhhccCCCceeeeeeccceEE
Confidence             999999999999999753111000000000000111111111         1333588999999999999999999999


Q ss_pred             EEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          185 CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      +||+..|.....+..|...+..++|.|-++++++-+.|...+.+.
T Consensus       149 l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  149 LWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             EEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence            999999998888888888888888877777776666666544444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=136.97  Aligned_cols=207  Identities=14%  Similarity=0.164  Sum_probs=152.0

Q ss_pred             ccceEEEEECCC---CCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC--CccC---eEEE
Q 023643           25 TRTVFRTVWGPS---KDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG--HDGP---AYDV   96 (279)
Q Consensus        25 ~~~v~~~~~~~~---~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~---v~~~   96 (279)
                      ...|+..+|-+.   .+++..++|+.+.+.-|++||.-+++                   ....+++  |.+.   ..++
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~-------------------lraSy~~ydh~de~taAhsL  164 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGK-------------------LRASYRAYDHQDEYTAAHSL  164 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccc-------------------cccchhhhhhHHhhhhheeE
Confidence            466888888642   22578899999999999999999853                   3333332  4433   4689


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecC-CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWK-EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AI  174 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  174 (279)
                      +|+|+|.  +|+.| ....|++||+. .+........+....                  +...+-|.+++|+|... .+
T Consensus       165 ~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k------------------~gq~giisc~a~sP~~~~~~  223 (406)
T KOG2919|consen  165 QFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK------------------FGQKGIISCFAFSPMDSKTL  223 (406)
T ss_pred             EecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhhccc------------------ccccceeeeeeccCCCCcce
Confidence            9999998  77765 46899999983 322211111111110                  01111278999999655 89


Q ss_pred             EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CCeEEEEeCCC-CceEEEecCCccccccCcce
Q 023643          175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DGTARIWDCKS-GKCIKVIDPVKDKQLKGVIS  252 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  252 (279)
                      ++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|.+|+. |-.|-+||+|. +.++..+.        .|..
T Consensus       224 a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~--------rhv~  295 (406)
T KOG2919|consen  224 AVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE--------RHVG  295 (406)
T ss_pred             eeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh--------hhcc
Confidence            99999999999998889999999999999999999999999999885 77899999986 45566663        3332


Q ss_pred             -eeeE--EEEcCCCCEEEEEcCcceEEeCC
Q 023643          253 -CVSC--ITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       253 -~v~~--~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       .-..  +...|++++|++|+.||.|++||
T Consensus       296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwd  325 (406)
T KOG2919|consen  296 DTNQRILFDLDPKGEILASGDTDGSVRVWD  325 (406)
T ss_pred             CccceEEEecCCCCceeeccCCCccEEEEe
Confidence             2233  44568999999999999999997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=144.81  Aligned_cols=198  Identities=17%  Similarity=0.207  Sum_probs=141.1

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      .+--|++|-..|.|.+.|....+....+.            +   ...-.+..|+++.|.|.++ ..++.+-.+|.+.++
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfn------------e---~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly  247 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFN------------E---ERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLY  247 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhh------------h---cccccccceEEEEEEeCCC-ceEEEEEecCceEEe
Confidence            66778899999999999887522111110            0   0011236799999999876 578888899999999


Q ss_pred             ecCCCccCc--ceeeeccCcccceEEeecCCCCCccccC-CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE
Q 023643          120 RWKEFTESK--VPINLQGNHVKPVLDLVNHQHKGPWGAL-SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV  196 (279)
Q Consensus       120 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  196 (279)
                      |........  ....+.....-.+...+......|.... -....|+.++|+|||++||+.+.||.++|+|..+.+++..
T Consensus       248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence            864321110  0001111111111111111111111111 1123689999999999999999999999999999999999


Q ss_pred             eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       197 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      ++..-+...|++|+|||+||++|++|-.|.||.+..++.+..-        .+|+.+|+.|+|+|
T Consensus       328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--------qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--------QGHKSWVSVVAFDP  384 (636)
T ss_pred             HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec--------cccccceeeEeecc
Confidence            9888899999999999999999999999999999999988887        79999999999984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.1e-21  Score=138.34  Aligned_cols=208  Identities=17%  Similarity=0.245  Sum_probs=149.7

Q ss_pred             cceEEEEECCCCC---CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           26 RTVFRTVWGPSKD---GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        26 ~~v~~~~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      .+=.++.+.+...   .....+|++.+.|.|++||..+                   ++.+..++++...++.+.|....
T Consensus        22 ~~~~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~t-------------------g~~l~~fk~~~~~~N~vrf~~~d   82 (376)
T KOG1188|consen   22 NEDFCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGT-------------------GQLLEEFKGPPATTNGVRFISCD   82 (376)
T ss_pred             cccceeeccchhhhccCcceeEEEEecCCeEEEEeccc-------------------hhhhheecCCCCcccceEEecCC
Confidence            3445566644211   1125799999999999999998                   77888999999999999998753


Q ss_pred             CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC---
Q 023643          103 EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG---  179 (279)
Q Consensus       103 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  179 (279)
                      ..+.+.+|+.||+|++||+|...... ......+...+                     -.|++.+..++.+++|+.   
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~~~~~~---------------------f~~ld~nck~~ii~~GtE~~~  140 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESA-RISWTQQSGTP---------------------FICLDLNCKKNIIACGTELTR  140 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhh-heeccCCCCCc---------------------ceEeeccCcCCeEEecccccc
Confidence            33689999999999999998643222 22222222111                     367777777778887753   


Q ss_pred             -CCeEEEEecCCCcE-EEE-eecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          180 -DSCAYCWDVESSRI-KMV-FKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       180 -d~~i~i~d~~~~~~-~~~-~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                       +-.+.+||.|..+. ++. ...|..-|++++|+| +.++|++||.||.|.|||+.....-..+..     .-.|...|.
T Consensus       141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-----viN~~sSI~  215 (376)
T KOG1188|consen  141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-----VINHGSSIH  215 (376)
T ss_pred             CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-----hhcccceee
Confidence             67899999998765 554 457999999999999 579999999999999999875422111110     035667799


Q ss_pred             EEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          256 CITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      ++.|..++ +.|.+-+-..+..+|+
T Consensus       216 ~igw~~~~ykrI~clTH~Etf~~~e  240 (376)
T KOG1188|consen  216 LIGWLSKKYKRIMCLTHMETFAIYE  240 (376)
T ss_pred             eeeeecCCcceEEEEEccCceeEEE
Confidence            99998876 3466666777777764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=1.2e-20  Score=134.81  Aligned_cols=225  Identities=18%  Similarity=0.228  Sum_probs=159.8

Q ss_pred             Cceeeecccc--ccccc---e--eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643            3 GDSTNWDEDA--YRKSI---L--KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         3 G~v~iw~~~~--~~~~~---~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      -.+|+|.+..  .+..+   +  ..-..+..++++..|+..   +.+++.+.+-|.+..|||++++..            
T Consensus       121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~---dp~~igtSSiDTTCTiWdie~~~~------------  185 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV---DPNLIGTSSIDTTCTIWDIETGVS------------  185 (364)
T ss_pred             CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC---CcceeEeecccCeEEEEEEeeccc------------
Confidence            3579998653  22111   1  122346689999999985   899999999999999999998411            


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                          +.....+-.|..+|..++|...+. ..|+++|.||++|+||++.......+.. ......                
T Consensus       186 ----~~vkTQLIAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE-~p~~~~----------------  243 (364)
T KOG0290|consen  186 ----GTVKTQLIAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYE-DPSPST----------------  243 (364)
T ss_pred             ----cceeeEEEecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEec-CCCCCC----------------
Confidence                222345667999999999998665 6999999999999999986422211111 111111                


Q ss_pred             CCCCCCceeEEEcCCC-CeEEEecC-CCeEEEEecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCC
Q 023643          156 LSPVPENNAIAVDPQG-GAIFSAAG-DSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~-~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~  231 (279)
                           +...++|+++. +++++-.. ...|.|.|++.. .++..+++|.+.|..++|.|. +..|++++.|..+-+||+.
T Consensus       244 -----pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  244 -----PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             -----cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence                 24678888744 46776544 467999999974 678899999999999999995 7889999999999999997


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcC-CCCEEEEEcCc
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRAT  272 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  272 (279)
                      +.-......+...   ..-...|..+.|++ .+.+++.+...
T Consensus       319 q~~~~~~~dPila---y~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  319 QMPRENGEDPILA---YTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             cccccCCCCchhh---hhccceeeeeeecccCCCEEEEEecC
Confidence            6432111111111   12345799999996 46788877654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=3e-20  Score=146.88  Aligned_cols=215  Identities=14%  Similarity=0.099  Sum_probs=160.1

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCC-----cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDG-----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPA   93 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v   93 (279)
                      +.+-+|.-+|++++.+|    +++++|+++...     .|++|+..+                   ......+.+|.-.|
T Consensus       519 ~KLYGHGyEv~~l~~s~----~gnliASaCKS~~~ehAvI~lw~t~~-------------------W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISP----TGNLIASACKSSLKEHAVIRLWNTAN-------------------WLQVQELEGHSLTV  575 (764)
T ss_pred             HHhccCceeEEEEEecC----CCCEEeehhhhCCccceEEEEEeccc-------------------hhhhheecccceEE
Confidence            45668999999999999    999999988654     489999988                   56667889999999


Q ss_pred             EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe
Q 023643           94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA  173 (279)
Q Consensus        94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  173 (279)
                      +.|+|+|+++  +|+++++|.++.+|...+.............|.            +         -|..+.|+|++.+
T Consensus       576 T~l~FSpdg~--~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~Ht------------R---------IIWdcsW~pde~~  632 (764)
T KOG1063|consen  576 TRLAFSPDGR--YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHT------------R---------IIWDCSWSPDEKY  632 (764)
T ss_pred             EEEEECCCCc--EEEEeecCceEEeeeeecccchhhhhccccccc------------e---------EEEEcccCcccce
Confidence            9999999999  999999999999999754322222111111111            1         1789999999999


Q ss_pred             EEEecCCCeEEEEecCCC--cEEEE--eecCCcceEEEEEcC-C----CcEEEEecCCCeEEEEeCCCCceEEEe---c-
Q 023643          174 IFSAAGDSCAYCWDVESS--RIKMV--FKGHSDYLHCIVARN-S----TNQIVTGSEDGTARIWDCKSGKCIKVI---D-  240 (279)
Q Consensus       174 l~~~~~d~~i~i~d~~~~--~~~~~--~~~~~~~i~~i~~~~-~----~~~l~~~~~d~~i~vwd~~~~~~~~~~---~-  240 (279)
                      ++|++.|.+|++|.....  +.+..  ...+..+|+++++.| +    +..++.|-..|.|.+|.........+.   . 
T Consensus       633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~  712 (764)
T KOG1063|consen  633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNL  712 (764)
T ss_pred             eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeee
Confidence            999999999999998876  33333  234778999999987 2    337888999999999986521111000   0 


Q ss_pred             CCccccccCcceeeeEEEEcCC----------CCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDAS----------ESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~~wd  279 (279)
                      ........+|...|+.++|.|.          ...|++|+.|..+++++
T Consensus       713 ~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~n  761 (764)
T KOG1063|consen  713 DTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFN  761 (764)
T ss_pred             ccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEee
Confidence            0001122577889999999974          23579999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=4.7e-20  Score=136.90  Aligned_cols=170  Identities=18%  Similarity=0.310  Sum_probs=132.1

Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      .-.+.+|+++|..++|+|.+. +.|||||.|.+|.||++-.....       .....++..+..+.           ..|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~-------~~ltepvv~L~gH~-----------rrV  134 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLT-------RDLTEPVVELYGHQ-----------RRV  134 (472)
T ss_pred             CCCccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccc-------cCcccceEEEeecc-----------eeE
Confidence            346789999999999999876 59999999999999997543111       11123333332222           247


Q ss_pred             eeEEEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          163 NAIAVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       163 ~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      --++|+|.. +.|++++.|..|.+||+.+++.+-++. |...|+++.|+.+|.+|++.+.|..|||||.++++.+..-..
T Consensus       135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~  213 (472)
T KOG0303|consen  135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA  213 (472)
T ss_pred             EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc
Confidence            889999964 478899999999999999999998888 999999999999999999999999999999999999988743


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEc---CcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVR---ATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd  279 (279)
                      |+     ++  .-..+.|-.++..+-||-   .+..+-+||
T Consensus       214 he-----G~--k~~Raifl~~g~i~tTGfsr~seRq~aLwd  247 (472)
T KOG0303|consen  214 HE-----GA--KPARAIFLASGKIFTTGFSRMSERQIALWD  247 (472)
T ss_pred             cc-----CC--CcceeEEeccCceeeeccccccccceeccC
Confidence            32     22  234556888888555553   477888886

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=2.6e-19  Score=138.40  Aligned_cols=180  Identities=14%  Similarity=0.109  Sum_probs=132.7

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEee
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWR  120 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~  120 (279)
                      .++++++.|+.|++||+.+                   ++.+..+..+.. +.+++|+|++.  .+ ++++.++.|++||
T Consensus         2 ~~~~s~~~d~~v~~~d~~t-------------------~~~~~~~~~~~~-~~~l~~~~dg~--~l~~~~~~~~~v~~~d   59 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT-------------------LEVTRTFPVGQR-PRGITLSKDGK--LLYVCASDSDTIQVID   59 (300)
T ss_pred             cEEEEecCCCEEEEEECCC-------------------CceEEEEECCCC-CCceEECCCCC--EEEEEECCCCeEEEEE
Confidence            5788999999999999987                   445555655543 67899999987  55 6778899999999


Q ss_pred             cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeec
Q 023643          121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      +.+..   ....+....                       .+..++|+|+++.++++ ..++.|++||+++.+.+..+..
T Consensus        60 ~~~~~---~~~~~~~~~-----------------------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~  113 (300)
T TIGR03866        60 LATGE---VIGTLPSGP-----------------------DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV  113 (300)
T ss_pred             CCCCc---EEEeccCCC-----------------------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence            76431   111111110                       13577899999977655 5689999999999888877763


Q ss_pred             CCcceEEEEEcCCCcEEEEecCCC-eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEe
Q 023643          200 HSDYLHCIVARNSTNQIVTGSEDG-TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVIL  277 (279)
Q Consensus       200 ~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~  277 (279)
                       ...+.+++|+|+++++++++.++ .+.+||.++++....+..         ......++|+|++++|+++ ..++.|++
T Consensus       114 -~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~~v~i  183 (300)
T TIGR03866       114 -GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---------DQRPRFAEFTADGKELWVSSEIGGTVSV  183 (300)
T ss_pred             -CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---------CCCccEEEECCCCCEEEEEcCCCCEEEE
Confidence             33468899999999999888765 467889988877655421         1234678999999988654 46899999


Q ss_pred             CC
Q 023643          278 FS  279 (279)
Q Consensus       278 wd  279 (279)
                      ||
T Consensus       184 ~d  185 (300)
T TIGR03866       184 ID  185 (300)
T ss_pred             EE
Confidence            96

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.1e-20  Score=135.34  Aligned_cols=242  Identities=16%  Similarity=0.161  Sum_probs=162.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc--------
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK--------   73 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------   73 (279)
                      .|.|++||..+.  ..+..+++++..+..++|..+.  .+..+.+++.||+|++||++.......+.+....        
T Consensus        49 ngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld  124 (376)
T KOG1188|consen   49 NGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD  124 (376)
T ss_pred             CCeEEEEeccch--hhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence            589999998886  4588899999999999997631  4678999999999999999876544322221111        


Q ss_pred             ---cce----------------eee----ccccccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcc
Q 023643           74 ---VQQ----------------LLG----IEPDGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKV  129 (279)
Q Consensus        74 ---~~~----------------~~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  129 (279)
                         ...                ++.    .+++..+ ..|.+.|++++|+|+.+ ++|+|||.||.|.+||++.......
T Consensus       125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-nlLlSGSvDGLvnlfD~~~d~EeDa  203 (376)
T KOG1188|consen  125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-NLLLSGSVDGLVNLFDTKKDNEEDA  203 (376)
T ss_pred             ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-CeEEeecccceEEeeecCCCcchhh
Confidence               011                111    2223333 45999999999999887 6999999999999999875422211


Q ss_pred             eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCC-------
Q 023643          130 PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHS-------  201 (279)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------  201 (279)
                      .......                      ...|.++.|..++ +.+++-+..+...+|++..+.+...+....       
T Consensus       204 L~~viN~----------------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r  261 (376)
T KOG1188|consen  204 LLHVINH----------------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR  261 (376)
T ss_pred             HHHhhcc----------------------cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence            1111111                      1137889998765 468888999999999999887555443210       


Q ss_pred             -----cceEEEEEcC-CCcEEEEecC-CCeEEEEeCC---CC---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643          202 -----DYLHCIVARN-STNQIVTGSE-DGTARIWDCK---SG---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVR  268 (279)
Q Consensus       202 -----~~i~~i~~~~-~~~~l~~~~~-d~~i~vwd~~---~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  268 (279)
                           ..+-.. .+| ++...+.++. -+...++-+.   ++   +.+..+.       .+|...|.++.|...+..+.|
T Consensus       262 ~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~T  333 (376)
T KOG1188|consen  262 KEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYT  333 (376)
T ss_pred             hhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-------CCcHHHHHHHhhhcccceeec
Confidence                 111111 223 3444444433 5666665443   22   2233332       357888999999999999999


Q ss_pred             EcCcceEEeC
Q 023643          269 VRATNYVILF  278 (279)
Q Consensus       269 ~~~d~~i~~w  278 (279)
                      |++||.+.+|
T Consensus       334 GGEDG~l~~W  343 (376)
T KOG1188|consen  334 GGEDGLLQAW  343 (376)
T ss_pred             cCCCceEEEE
Confidence            9999999999

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=9.9e-20  Score=131.70  Aligned_cols=209  Identities=15%  Similarity=0.160  Sum_probs=158.3

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      -.++|+|.+|++    |...+|++..+..|.||.......                .++.++++.|...|++++|.|..+
T Consensus         9 ~~~pitchAwn~----drt~iAv~~~~~evhiy~~~~~~~----------------w~~~htls~Hd~~vtgvdWap~sn   68 (361)
T KOG1523|consen    9 LLEPITCHAWNS----DRTQIAVSPNNHEVHIYSMLGADL----------------WEPAHTLSEHDKIVTGVDWAPKSN   68 (361)
T ss_pred             ccCceeeeeecC----CCceEEeccCCceEEEEEecCCCC----------------ceeceehhhhCcceeEEeecCCCC
Confidence            458999999999    999999999999999999876321                467789999999999999999998


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        .|++|+.|..-++|.......-+....+...                      +.+.+++.|+|.++.|++|+.-..|
T Consensus        69 --rIvtcs~drnayVw~~~~~~~WkptlvLlRi----------------------NrAAt~V~WsP~enkFAVgSgar~i  124 (361)
T KOG1523|consen   69 --RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI----------------------NRAATCVKWSPKENKFAVGSGARLI  124 (361)
T ss_pred             --ceeEccCCCCccccccCCCCeeccceeEEEe----------------------ccceeeEeecCcCceEEeccCccEE
Confidence              9999999999999997433222222222211                      1136899999999999999999999


Q ss_pred             EEEecCCCcE----EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc-----------ccccc
Q 023643          184 YCWDVESSRI----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK-----------DKQLK  248 (279)
Q Consensus       184 ~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----------~~~~~  248 (279)
                      .+|-.+...-    .+.-+.+.+.|.+++|+|++-+|++|+.|+..+||...-. .+..-+...           ..++.
T Consensus       125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK-~Vdekpap~pWgsk~PFG~lm~E~~  203 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK-GVDEKPAPTPWGSKMPFGQLMSEAS  203 (361)
T ss_pred             EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeee-ccccCCCCCCCccCCcHHHHHHhhc
Confidence            9998765422    2233456788999999999999999999999999964210 000000000           01113


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          249 GVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      ...+++..+.|+|+|..|+-.+.|..+.+
T Consensus       204 ~~ggwvh~v~fs~sG~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  204 SSGGWVHGVLFSPSGNRLAWVGHDSTVSF  232 (361)
T ss_pred             cCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence            45578999999999999999988888765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=3.7e-19  Score=140.79  Aligned_cols=234  Identities=13%  Similarity=0.103  Sum_probs=167.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +..+.+||++.+  ..++++++|.+.|++++|+.    +|.++|+|+.|..|.+|+..-...   +.++....-+.....
T Consensus        32 g~rlliyD~ndG--~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~klEG~---LkYSH~D~IQCMsFN  102 (1081)
T KOG1538|consen   32 GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKLEGI---LKYSHNDAIQCMSFN  102 (1081)
T ss_pred             CCEEEEEeCCCc--ccccccccccceEEEEEEcc----CCceeccCCCceeEEEecccccce---eeeccCCeeeEeecC
Confidence            456788998877  45889999999999999999    999999999999999999764211   111111111100000


Q ss_pred             c-------------------cccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccc
Q 023643           82 P-------------------DGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKP  140 (279)
Q Consensus        82 ~-------------------~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  140 (279)
                      |                   ......  ....+.+.+|..+|+  +|+.|-.+|+|.+-+-.  .+.+....-.+.... 
T Consensus       103 P~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq--ylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Ns-  177 (1081)
T KOG1538|consen  103 PITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ--YLALGMFNGTISIRNKN--GEEKVKIERPGGSNS-  177 (1081)
T ss_pred             chHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc--EEEEeccCceEEeecCC--CCcceEEeCCCCCCC-
Confidence            0                   011111  234678889999988  99999999999987532  112222222222222 


Q ss_pred             eEEeecCCCCCccccCCCCCCceeEEEcCCC-----CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643          141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQG-----GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  215 (279)
                                          .|.+++|+|..     ..+++.....++.+|.+. |+.+..-+.-.-...|+.+.++|.+
T Consensus       178 --------------------piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy  236 (1081)
T KOG1538|consen  178 --------------------PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEY  236 (1081)
T ss_pred             --------------------CceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcE
Confidence                                36889999853     368888888889998875 5555533333334578999999999


Q ss_pred             EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          216 IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       216 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.|+.|+.+++|- +.|-.+.++        .....+|+.++..|++++++.|+.||+|..|+
T Consensus       237 ~LiGGsdk~L~~fT-R~GvrLGTv--------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLFT-RDGVRLGTV--------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             EEEccCCCceEEEe-ecCeEEeec--------cccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            99999999999996 678777777        45678999999999999999999999997653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.2e-19  Score=129.64  Aligned_cols=214  Identities=15%  Similarity=0.134  Sum_probs=151.6

Q ss_pred             ecccceEEEEECCCCC-CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           23 ILTRTVFRTVWGPSKD-GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      .|.-+++.+-|.|+.. ...++||+.+.  .+|+|.+...+.......          .-....-..+..++++..|+.-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~----------~L~~~kns~~~aPlTSFDWne~  161 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS----------VLNNNKNSEFCAPLTSFDWNEV  161 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh----------hhccCcccccCCcccccccccC
Confidence            5788999999999532 22356776543  799999985322211000          0000112236679999999986


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGD  180 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  180 (279)
                      .. +++.++|-|-+..|||++..........+                      ..|.++|..++|...+. .+++.+.|
T Consensus       162 dp-~~igtSSiDTTCTiWdie~~~~~~vkTQL----------------------IAHDKEV~DIaf~~~s~~~FASvgaD  218 (364)
T KOG0290|consen  162 DP-NLIGTSSIDTTCTIWDIETGVSGTVKTQL----------------------IAHDKEVYDIAFLKGSRDVFASVGAD  218 (364)
T ss_pred             Cc-ceeEeecccCeEEEEEEeeccccceeeEE----------------------EecCcceeEEEeccCccceEEEecCC
Confidence            66 59999999999999999764121111111                      23334588999998554 78999999


Q ss_pred             CeEEEEecCCCcEEEEe---ecCCcceEEEEEcC-CCcEEEEecCCC-eEEEEeCCC-CceEEEecCCccccccCcceee
Q 023643          181 SCAYCWDVESSRIKMVF---KGHSDYLHCIVARN-STNQIVTGSEDG-TARIWDCKS-GKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~-~~~~l~~~~~d~-~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      |.+++||++..+--..+   .....+...++|++ +.+++++-..|. .|.|.|+|. ..++..+        .+|.+.|
T Consensus       219 GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--------~~H~a~V  290 (364)
T KOG0290|consen  219 GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--------RNHQASV  290 (364)
T ss_pred             CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--------hcCcccc
Confidence            99999999976543332   22246788899988 577888766554 599999987 4566666        7999999


Q ss_pred             eEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          255 SCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      ++++|.|. ...|.|++.|..+.+||
T Consensus       291 NgIaWaPhS~~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  291 NGIAWAPHSSSHICTAGDDCQALIWD  316 (364)
T ss_pred             cceEecCCCCceeeecCCcceEEEEe
Confidence            99999995 57899999999999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=3.9e-18  Score=125.75  Aligned_cols=194  Identities=12%  Similarity=0.124  Sum_probs=141.9

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ..|..+-|+.      .++|..+.+.  .+++.++...                   ..+..+. -..+|.++.++.+  
T Consensus        47 ~~IvEmLFSS------SLvaiV~~~qpr~Lkv~~~Kk~-------------------~~ICe~~-fpt~IL~VrmNr~--   98 (391)
T KOG2110|consen   47 VSIVEMLFSS------SLVAIVSIKQPRKLKVVHFKKK-------------------TTICEIF-FPTSILAVRMNRK--   98 (391)
T ss_pred             eEEEEeeccc------ceeEEEecCCCceEEEEEcccC-------------------ceEEEEe-cCCceEEEEEccc--
Confidence            3456666765      5666665443  4788888762                   2233332 3456899998765  


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe--cCCC
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA--AGDS  181 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~  181 (279)
                        .|+++=.+ .|+|||+++.+....+.....+..                      .+.++++++.+.+++--  ...|
T Consensus        99 --RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~----------------------gl~AlS~n~~n~ylAyp~s~t~G  153 (391)
T KOG2110|consen   99 --RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPK----------------------GLCALSPNNANCYLAYPGSTTSG  153 (391)
T ss_pred             --eEEEEEcc-cEEEEecccceeehhhhccCCCcc----------------------ceEeeccCCCCceEEecCCCCCc
Confidence              56666554 499999986533333222212111                      13455555555577653  3368


Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      .|.+||+.+-+++..+..|.+.+-+++|+++|.+||++|..|+ ||||.+.+|+.+..++.-      .....|.+++|+
T Consensus       154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG------~~~~~IySL~Fs  227 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG------TYPVSIYSLSFS  227 (391)
T ss_pred             eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC------ceeeEEEEEEEC
Confidence            9999999999999999999999999999999999999999998 799999999999999631      124678999999


Q ss_pred             CCCCEEEEEcCcceEEeC
Q 023643          261 ASESWLVRVRATNYVILF  278 (279)
Q Consensus       261 ~~~~~l~~~~~d~~i~~w  278 (279)
                      |++.+|++.|..++|++|
T Consensus       228 ~ds~~L~~sS~TeTVHiF  245 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIF  245 (391)
T ss_pred             CCCCeEEEecCCCeEEEE
Confidence            999999999999999987

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=7.7e-21  Score=153.28  Aligned_cols=238  Identities=18%  Similarity=0.193  Sum_probs=169.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |.-|+||..++.  .++....+|.+.|+.++.+.    +..++|+++.|..|++|.+.+                   +.
T Consensus       211 d~lvKiwS~et~--~~lAs~rGhs~ditdlavs~----~n~~iaaaS~D~vIrvWrl~~-------------------~~  265 (1113)
T KOG0644|consen  211 DRLVKIWSMETA--RCLASCRGHSGDITDLAVSS----NNTMIAAASNDKVIRVWRLPD-------------------GA  265 (1113)
T ss_pred             cceeeeeeccch--hhhccCCCCccccchhccch----hhhhhhhcccCceEEEEecCC-------------------Cc
Confidence            557899998877  55889999999999999998    888999999999999999998                   78


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEe--ecCCC---CCccccC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL--VNHQH---KGPWGAL  156 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~  156 (279)
                      ++..+++|++.|++++|+|-      .+.+.||++++||.+-.................+-.+  .+...   .+.-+..
T Consensus       266 pvsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             hHHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            99999999999999999985      3778899999999872111111111111111100000  00000   0000001


Q ss_pred             CCCCCceeEEEcCCCC-----------eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCe
Q 023643          157 SPVPENNAIAVDPQGG-----------AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGT  224 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~-----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~  224 (279)
                      +......+++|....-           +.+++-.+-.+++|++.++...+.+.+|...+..+.++| +.....+++.||.
T Consensus       340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence            1111223333333322           334444567789999999999999999999999999999 5667788999999


Q ss_pred             EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ..|||+-.|.+++.+.       .+| ..+..-+|+++|..++....-|.+.+.
T Consensus       420 t~iwdi~eg~pik~y~-------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  420 TIIWDIWEGIPIKHYF-------IGH-GKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             eEeeecccCCcceeee-------ccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence            9999999998888774       344 445567899999888887777776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=8e-18  Score=136.10  Aligned_cols=220  Identities=25%  Similarity=0.411  Sum_probs=167.6

Q ss_pred             CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |+.+++|+... .  .....+..|...|..++|+|    ++..+++++. |+.+++|++..                   
T Consensus       133 d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------------------  187 (466)
T COG2319         133 DGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDLRT-------------------  187 (466)
T ss_pred             CccEEEEEecCCC--eEEEEEecCcccEEEEEECC----CCCEEEecCCCCCceEEEEcCC-------------------
Confidence            78899999876 3  34667788999999999999    7888888885 99999999997                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCccee-eeccCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI-NLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      ...+..+.+|...|.+++|+|++. ..+++++.|+.|++||.+.   ..... ...++..                    
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~--------------------  243 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLST---GKLLRSTLSGHSD--------------------  243 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCC---CcEEeeecCCCCc--------------------
Confidence            455667777999999999998886 2455559999999997652   12222 1222111                    


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE-EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI-KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                        .. ...|+|++..+++++.|+.+++||++.... ...+..|...+.++.|.|++..+++++.|+.+.+||..+.....
T Consensus       244 --~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         244 --SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             --ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence              11 117899988888999999999999987654 44456788999999999988888889999999999998887766


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd  279 (279)
                      ...      ...|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus       321 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         321 SLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             Eee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            663      03566678899994333555555 6788888774

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=6.4e-20  Score=144.26  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=155.3

Q ss_pred             Cceeeeccccccc---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            3 GDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         3 G~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |.|-||+++..-.   ..+..+ .....|+.+.|.|   .|...||+++.||.|++|.+.........            
T Consensus       603 G~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdP---FD~~rLAVa~ddg~i~lWr~~a~gl~e~~------------  666 (1012)
T KOG1445|consen  603 GVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDP---FDDERLAVATDDGQINLWRLTANGLPENE------------  666 (1012)
T ss_pred             ceEEEEEcCCCCCCCccccccc-ccCceeeecccCC---CChHHeeecccCceEEEEEeccCCCCccc------------
Confidence            6778888654321   111122 2356799999999   58999999999999999999865322211            


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ..+...+..|...|+++.|+|-.. +.|++++.|.+|++||+.+.   .....+.+|.                      
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~---~~~~~l~gHt----------------------  720 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAA-DVLAVASYDSTIELWDLANA---KLYSRLVGHT----------------------  720 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhh-hHhhhhhccceeeeeehhhh---hhhheeccCc----------------------
Confidence            466678889999999999999754 48999999999999998754   2333333332                      


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCc-EEEEeecCC-cceEEEEEcCCCcEEEEecCCC----eEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHS-DYLHCIVARNSTNQIVTGSEDG----TARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~----~i~vwd~~~~  233 (279)
                      ..|..++|+|+|+.+++.+.||+|++|..++++ ++++-++.- ..--.|.|.-+|++++..+.|.    .|.+||..+-
T Consensus       721 dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  721 DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence            248899999999999999999999999998764 444433321 1223456777899988777654    4888887652


Q ss_pred             --ceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeC
Q 023643          234 --KCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILF  278 (279)
Q Consensus       234 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~w  278 (279)
                        ..+.+...       .-...+.--.+++|. -++++|-.|..|.+|
T Consensus       801 ~~~pl~t~~l-------Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  801 DLRPLYTQVL-------DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY  841 (1012)
T ss_pred             cCCcceeeee-------cccCccccccccCCCceEEEecCCCceEEEE
Confidence              33333211       000011112345554 456788888888876

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=2.5e-19  Score=129.97  Aligned_cols=216  Identities=16%  Similarity=0.171  Sum_probs=151.4

Q ss_pred             CCceeeeccccccccceeeeeecccc---eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRT---VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      |.-|++||.-+++.......-.|.++   -.+++|+|    ||..|++|.. ..|+++|+......              
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~----DGeqlfaGyk-rcirvFdt~RpGr~--------------  192 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP----DGEQLFAGYK-RCIRVFDTSRPGRD--------------  192 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecC----CCCeEeeccc-ceEEEeeccCCCCC--------------
Confidence            34588999766543332222234433   45789999    9999988755 68999999542111              


Q ss_pred             eccccccc-----cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           79 GIEPDGFL-----HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        79 ~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                        .+....     .+..+-+.+++|+|... ..++.++...++-|+.-...   .....+.+ +                
T Consensus       193 --c~vy~t~~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~---~pl~llgg-h----------------  249 (406)
T KOG2919|consen  193 --CPVYTTVTKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGR---RPLQLLGG-H----------------  249 (406)
T ss_pred             --CcchhhhhcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCC---Cceeeecc-c----------------
Confidence              111111     22367789999999765 48899998888888874321   11122222 1                


Q ss_pred             ccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCC-CcEEEEeecCCc-ceEEE--EEcCCCcEEEEecCCCeEEEE
Q 023643          154 GALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVES-SRIKMVFKGHSD-YLHCI--VARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~-~i~~i--~~~~~~~~l~~~~~d~~i~vw  228 (279)
                           .+.|+.+.|.++|+.|++|.. |..|..||++. ..++..+..|.+ .=..|  ...|++++|++|+.||.|++|
T Consensus       250 -----~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  250 -----GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVW  324 (406)
T ss_pred             -----CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEE
Confidence                 124899999999999999875 67899999986 456777776654 22334  445789999999999999999


Q ss_pred             eCCC-CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          229 DCKS-GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       229 d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      |++. +.....+        ..+...++.++++|--.++||++..
T Consensus       325 dlk~~gn~~sv~--------~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  325 DLKDLGNEVSVT--------GNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ecCCCCCccccc--------ccccccccceecCcccceeeeccCc
Confidence            9998 6766666        5677889999999998888887654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.3e-17  Score=134.91  Aligned_cols=220  Identities=25%  Similarity=0.410  Sum_probs=167.5

Q ss_pred             CCCceeeeccccccccceeeeeecc-cceEEEEE-CCCCCCCCC-EEEEecC-CCcEEEEeCCCCCcccccccCCcccce
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILT-RTVFRTVW-GPSKDGSPD-TIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~~-~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      .|+.+.+|+..... ..+..+..+. ..+..+.+ .+    ++. .++..+. |+.+.+|+....               
T Consensus        85 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~---------------  144 (466)
T COG2319          85 SDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSP----DGNSILLASSSLDGTVKLWDLSTP---------------  144 (466)
T ss_pred             CCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECC----CcceEEeccCCCCccEEEEEecCC---------------
Confidence            47899999987764 1344454433 36777777 77    666 5555444 999999999861               


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                         ......+..|...|..++|+|++.  .+++++. |+.+++|++..   ......+.+                    
T Consensus       145 ---~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------------------  196 (466)
T COG2319         145 ---GKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRT---GKPLSTLAG--------------------  196 (466)
T ss_pred             ---CeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCC---CceEEeecc--------------------
Confidence               344567778999999999999998  8888885 99999999864   112222222                    


Q ss_pred             CCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          156 LSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                        +...+.+++|+|++. .+++++.|+.|++||...+.... .+..|.... -..|+|++.++++++.|+.+++|+++..
T Consensus       197 --~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         197 --HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             --CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence              112378999999988 55555899999999998888887 688888775 4489999989999999999999999876


Q ss_pred             ce-EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          234 KC-IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .. ...+        ..|...+.++.|.|++..+++++.|+.+.+||
T Consensus       274 ~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~  312 (466)
T COG2319         274 SSLLRTL--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD  312 (466)
T ss_pred             CcEEEEE--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            65 4443        36678999999999888888898898888884

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=1.3e-18  Score=140.15  Aligned_cols=210  Identities=12%  Similarity=0.107  Sum_probs=138.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      +..|.+||.++..   .+.+..|...+..++|+|    +++.|+..+.+   ..|++||+.++.                
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSP----DG~~la~~s~~~~~~~i~i~dl~tg~----------------  239 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSP----DGSKLAYVSFENKKSQLVVHDLRSGA----------------  239 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcC----CCCEEEEEEecCCCcEEEEEeCCCCc----------------
Confidence            3578999988754   334555778899999999    89999887643   369999998742                


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                       .+.+..+.+|.   ..++|+|+++  .|+.+ +.+|.+.||.++....  ....+..+.                    
T Consensus       240 -~~~l~~~~g~~---~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~--------------------  291 (429)
T PRK01742        240 -RKVVASFRGHN---GAPAFSPDGS--RLAFASSKDGVLNIYVMGANGG--TPSQLTSGA--------------------  291 (429)
T ss_pred             -eEEEecCCCcc---CceeECCCCC--EEEEEEecCCcEEEEEEECCCC--CeEeeccCC--------------------
Confidence             12233344443   3689999998  77665 4688877775432111  111111110                    


Q ss_pred             CCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          158 PVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                        ..+....|+|+++.|+.++ .++...+|++... .....+ .+..  ....|+|+|++|+..+.++ +.+||+.+++.
T Consensus       292 --~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~  365 (429)
T PRK01742        292 --GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST  365 (429)
T ss_pred             --CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence              0246789999999776554 5677788876432 222223 3333  4578999999998887766 55599988876


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .....        .+  ....+.|+|+|++|+.++.++...+|
T Consensus       366 ~~lt~--------~~--~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        366 EVLSS--------TF--LDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             EEecC--------CC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence            53321        11  12457899999999999888877765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.82  E-value=6.6e-19  Score=135.73  Aligned_cols=201  Identities=18%  Similarity=0.237  Sum_probs=141.0

Q ss_pred             Cceeeecccccccccee--eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee--
Q 023643            3 GDSTNWDEDAYRKSILK--EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL--   78 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--   78 (279)
                      |.|.+.|+.......+.  ........|+++.|-|-   +..+++++-.+|.+.+||..-........+........+  
T Consensus       195 Gqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg---~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i  271 (636)
T KOG2394|consen  195 GQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG---SDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAI  271 (636)
T ss_pred             CceEEecchhhHHHHhhhhcccccccceEEEEEEeC---CCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEE
Confidence            55666664443221111  12223578999999994   777888888999999998743222211111111111100  


Q ss_pred             -------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643           79 -------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG  151 (279)
Q Consensus        79 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (279)
                             ...++..+.--++.|+..+|+|+++  +||+.+.||.+||||..+.........+.+                
T Consensus       272 ~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG----------------  333 (636)
T KOG2394|consen  272 LTSKSKKTRNPVARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFG----------------  333 (636)
T ss_pred             eeeeccccCCccceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhcc----------------
Confidence                   0244444444566899999999998  999999999999999865322222222222                


Q ss_pred             ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC-------------------
Q 023643          152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS-------------------  212 (279)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-------------------  212 (279)
                               ...|++|+|||+++++|+.|..|.||.+...+.+..-++|..+|..++|.|-                   
T Consensus       334 ---------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~  404 (636)
T KOG2394|consen  334 ---------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSD  404 (636)
T ss_pred             ---------ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccc
Confidence                     2589999999999999999999999999999999999999999999999830                   


Q ss_pred             -----------------------------CcEEEEecCCCeEEEEeCCCC
Q 023643          213 -----------------------------TNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       213 -----------------------------~~~l~~~~~d~~i~vwd~~~~  233 (279)
                                                   ...|.+.+.|-.+.+||+...
T Consensus       405 ~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  405 VAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             hhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence                                         015788889999999998654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.5e-19  Score=136.70  Aligned_cols=224  Identities=19%  Similarity=0.262  Sum_probs=152.0

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cCCccCeEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HGHDGPAYDV   96 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~   96 (279)
                      .+++.+|.+.|.++.|+.    +|.+|++|+.|-.+.|||.-.                   .++++.+ .+|.+.|.++
T Consensus        43 E~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~-------------------~KllhsI~TgHtaNIFsv   99 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFE-------------------YKLLHSISTGHTANIFSV   99 (758)
T ss_pred             hhhhccccceecceeecC----CCCEEeecCCcceEEeecchh-------------------cceeeeeecccccceeEE
Confidence            457889999999999999    999999999999999999986                   5556655 4799999999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIF  175 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  175 (279)
                      .|.|.....+++||..|..|+++|+...+....-...    ..+..           ....+...|..++-.|++ ..+.
T Consensus       100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~----~~~~~-----------~~~cht~rVKria~~p~~Phtfw  164 (758)
T KOG1310|consen  100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM----EETTR-----------CWSCHTDRVKRIATAPNGPHTFW  164 (758)
T ss_pred             eeeccCCCeEEEeccCcceEEEEecccccccccccCc----cchhh-----------hhhhhhhhhhheecCCCCCceEE
Confidence            9999876679999999999999999753222111000    00000           001122246677888887 5889


Q ss_pred             EecCCCeEEEEecCCCcEE----------EEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCc----------
Q 023643          176 SAAGDSCAYCWDVESSRIK----------MVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGK----------  234 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~----------  234 (279)
                      +++.||+|+-||++....-          ..+....-...|+..+|. ..+|+.|+.|-..++||.+...          
T Consensus       165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~  244 (758)
T KOG1310|consen  165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN  244 (758)
T ss_pred             EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence            9999999999999863211          111112234678999995 6789999999999999953211          


Q ss_pred             --------eEEEecCCccccccC----cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 --------CIKVIDPVKDKQLKG----VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 --------~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              ++..+.+-......+    ...-++-+.|+|+|.-|+..-..-.|++||
T Consensus       245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd  301 (758)
T KOG1310|consen  245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD  301 (758)
T ss_pred             CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence                    122221110000011    112357788999987666654444566654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=8.9e-17  Score=125.77  Aligned_cols=229  Identities=11%  Similarity=0.148  Sum_probs=144.0

Q ss_pred             CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |+.|++|++.. .....++.+. +.+....++++|    ++++|+++ ..++.|.+|++.....                
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp----d~~~lyv~~~~~~~i~~~~~~~~g~----------------   69 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP----DKRHLYVGVRPEFRVLSYRIADDGA----------------   69 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC----CCCEEEEEECCCCcEEEEEECCCCc----------------
Confidence            78999999863 3333444443 346677899999    89988665 4688999999973110                


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccC-cceeeeccCcccceEEeecCCCCCccccCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTES-KVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      ...+.... ..+....+.|+|+++  +|++++ .++.|.+|++++.... .......+.                     
T Consensus        70 l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~---------------------  125 (330)
T PRK11028         70 LTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL---------------------  125 (330)
T ss_pred             eEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccCC---------------------
Confidence            01111111 223456899999998  666665 4899999998632111 111111000                     


Q ss_pred             CCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCcEEE-----Eee-cCCcceEEEEEcCCCcEEEEecC-CCeEEEEe
Q 023643          158 PVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSRIKM-----VFK-GHSDYLHCIVARNSTNQIVTGSE-DGTARIWD  229 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-----~~~-~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd  229 (279)
                        .....++++|+++++++++ .++.|.+||+.+...+.     ... ........++|+|+++++++++. ++.|.+|+
T Consensus       126 --~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~  203 (330)
T PRK11028        126 --EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ  203 (330)
T ss_pred             --CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence              0146788999999886554 56999999997632221     111 12234678999999999887776 99999999


Q ss_pred             CCC--Cc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643          230 CKS--GK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILFS  279 (279)
Q Consensus       230 ~~~--~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd  279 (279)
                      +..  ++  .+..+..... . ..+......+.|+|++++|+++.. ++.|.+|+
T Consensus       204 ~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~  256 (330)
T PRK11028        204 LKDPHGEIECVQTLDMMPA-D-FSDTRWAADIHITPDGRHLYACDRTASLISVFS  256 (330)
T ss_pred             EeCCCCCEEEEEEEecCCC-c-CCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence            973  33  2333321100 0 011123346889999999998854 68888874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=1.4e-17  Score=132.07  Aligned_cols=210  Identities=14%  Similarity=0.152  Sum_probs=152.5

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      .|..++|-|    ||..|+.+..+ .+.+||.+.                   +..+.++++|.+.|++++|+.+|+  .
T Consensus        14 ci~d~afkP----DGsqL~lAAg~-rlliyD~nd-------------------G~llqtLKgHKDtVycVAys~dGk--r   67 (1081)
T KOG1538|consen   14 CINDIAFKP----DGTQLILAAGS-RLLVYDTSD-------------------GTLLQPLKGHKDTVYCVAYAKDGK--R   67 (1081)
T ss_pred             chheeEECC----CCceEEEecCC-EEEEEeCCC-------------------cccccccccccceEEEEEEccCCc--e
Confidence            899999999    88887776554 799999998                   788899999999999999999998  9


Q ss_pred             EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC-----------CCcccc-------CCCCCCceeEEEc
Q 023643          107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH-----------KGPWGA-------LSPVPENNAIAVD  168 (279)
Q Consensus       107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-------~~~~~~i~~~~~~  168 (279)
                      +++|+.|..|.+|+..-.    -  .++-.|...+.++..+.-           -+-|..       ......+.+++|.
T Consensus        68 FASG~aDK~VI~W~~klE----G--~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt  141 (1081)
T KOG1538|consen   68 FASGSADKSVIIWTSKLE----G--ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT  141 (1081)
T ss_pred             eccCCCceeEEEeccccc----c--eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec
Confidence            999999999999985321    1  111222233333321111           111111       1112457899999


Q ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCC-----cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNST-----NQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~-----~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .||.+++.|-.+|+|.+-+- ++++...+.   +..++|.+++|+|..     ..++......++.+|.+ +|+.+..- 
T Consensus       142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~-  218 (1081)
T KOG1538|consen  142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD-  218 (1081)
T ss_pred             CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc-
Confidence            99999999999999999864 455544444   367899999999952     46777778888888876 45544422 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                             +.-...-.|+.+.++|.+++.|+.|+.+.+|
T Consensus       219 -------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f  249 (1081)
T KOG1538|consen  219 -------RALNFDPCCISYFTNGEYILLGGSDKQLSLF  249 (1081)
T ss_pred             -------ccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence                   1222334688999999999999999988876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.2e-16  Score=124.94  Aligned_cols=231  Identities=8%  Similarity=0.070  Sum_probs=141.0

Q ss_pred             CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ++.|.+|+++. .......... .......++|+|    ++++|++++ .++.|.+|++++....               
T Consensus        56 ~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~----~g~~l~v~~~~~~~v~v~~~~~~g~~---------------  115 (330)
T PRK11028         56 EFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH----QGRFLFSASYNANCVSVSPLDKDGIP---------------  115 (330)
T ss_pred             CCcEEEEEECCCCceEEeeeec-CCCCceEEEECC----CCCEEEEEEcCCCeEEEEEECCCCCC---------------
Confidence            46778888762 2222222222 234567899999    888887765 5889999999742110               


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      .+.+..+. +......++++|+++  ++ ++...++.|.+||+++.........    ..  + ...  ..         
T Consensus       116 ~~~~~~~~-~~~~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~~g~l~~~~~----~~--~-~~~--~g---------  174 (330)
T PRK11028        116 VAPIQIIE-GLEGCHSANIDPDNR--TLWVPCLKEDRIRLFTLSDDGHLVAQEP----AE--V-TTV--EG---------  174 (330)
T ss_pred             CCceeecc-CCCcccEeEeCCCCC--EEEEeeCCCCEEEEEEECCCCcccccCC----Cc--e-ecC--CC---------
Confidence            01112222 223466788999997  55 5666679999999864211100000    00  0 000  00         


Q ss_pred             CCCceeEEEcCCCCeEEEecC-CCeEEEEecCC--C--cEEEEeecC------CcceEEEEEcCCCcEEEEecC-CCeEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAG-DSCAYCWDVES--S--RIKMVFKGH------SDYLHCIVARNSTNQIVTGSE-DGTAR  226 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~--~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~-d~~i~  226 (279)
                       .....+.|+|++++++++.. ++.|.+||++.  +  +.+..+...      ......+.++|++++++++.. ++.|.
T Consensus       175 -~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~  253 (330)
T PRK11028        175 -AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS  253 (330)
T ss_pred             -CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence             01467899999999988876 89999999973  3  233333221      122346889999999888854 78999


Q ss_pred             EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643          227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILFS  279 (279)
Q Consensus       227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd  279 (279)
                      +|++........+....    .. ......++|+|+|++|+++.. +++|.+|+
T Consensus       254 v~~i~~~~~~~~~~~~~----~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        254 VFSVSEDGSVLSFEGHQ----PT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EEEEeCCCCeEEEeEEE----ec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            99986532211211000    11 123457899999999998765 88999883

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=9.4e-19  Score=130.37  Aligned_cols=161  Identities=19%  Similarity=0.324  Sum_probs=129.5

Q ss_pred             ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcc--eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643           90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKV--PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV  167 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  167 (279)
                      ..+|.++.|.++.. +.|+||+.|..|++|.++.......  ...+..         .         ...|..+|+++.|
T Consensus        13 ~~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s---------~---------Ls~H~~aVN~vRf   73 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLS---------S---------LSRHTRAVNVVRF   73 (434)
T ss_pred             CCceEEEEeccCcc-cceecccCccceeeeeeeecCCCCCceeEEEee---------c---------ccCCcceeEEEEE
Confidence            35799999998876 4899999999999999875433321  111110         0         0112235899999


Q ss_pred             cCCCCeEEEecCCCeEEEEecC--------C--------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          168 DPQGGAIFSAAGDSCAYCWDVE--------S--------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       168 ~~~~~~l~~~~~d~~i~i~d~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      +|+|..|++|+.+|.|.+|-..        +        ......+.+|...|+.++|+|+++++++++.|+.+++||+.
T Consensus        74 ~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   74 SPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             cCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            9999999999999999999765        2        23445677899999999999999999999999999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      .|+....+        .+|...+..++|+|-++++++=+.|...+.
T Consensus       154 ~G~l~~~~--------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  154 AGQLLAIL--------DDHEHYVQGVAWDPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             cceeEeec--------cccccccceeecchhhhhhhhhccCcccce
Confidence            99999998        788899999999999999998888764443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=9.9e-18  Score=140.65  Aligned_cols=225  Identities=16%  Similarity=0.148  Sum_probs=159.2

Q ss_pred             eccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc
Q 023643            8 WDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH   87 (279)
Q Consensus         8 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (279)
                      |++++   ..+..+..|...|..++.++.   ++.++++|+.||+|++|+..........            .+...++.
T Consensus      1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~---~~s~FvsgS~DGtVKvW~~~k~~~~~~s------------~rS~ltys 1095 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSE---HTSLFVSGSDDGTVKVWNLRKLEGEGGS------------ARSELTYS 1095 (1431)
T ss_pred             CCccc---eEeehhhhccccccceeecCC---CCceEEEecCCceEEEeeehhhhcCcce------------eeeeEEEe
Confidence            66666   556677778899999999883   6699999999999999999864321100            22333444


Q ss_pred             CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce----eeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP----INLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        88 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      .-..++.++.+++.+.  .+|.++.||.|++.+++........    ..........+                    +.
T Consensus      1096 ~~~sr~~~vt~~~~~~--~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~v--------------------v~ 1153 (1431)
T KOG1240|consen 1096 PEGSRVEKVTMCGNGD--QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVV--------------------VS 1153 (1431)
T ss_pred             ccCCceEEEEeccCCC--eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCce--------------------EE
Confidence            3567899999999998  9999999999999998753111111    01111111111                    33


Q ss_pred             eEEEcC-CCC-eEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          164 AIAVDP-QGG-AIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       164 ~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..++.. ... .++.+..-+.|..||+++......++  ...+.|++++.+|.+.+++.|+..|.+.+||+|-+.++..+
T Consensus      1154 m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1154 MHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred             eecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence            334433 222 67778888999999999876665554  34578999999999999999999999999999999999888


Q ss_pred             cCCccccccCcceeeeEEEEcCC---CCEEEEEc--CcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDAS---ESWLVRVR--ATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~d~~i~~wd  279 (279)
                      .       ..+..++..+..+|-   ....++++  ..+.|.+|+
T Consensus      1234 ~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1234 E-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             c-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            6       345577888877763   34555443  467788885

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.1e-17  Score=138.50  Aligned_cols=232  Identities=14%  Similarity=0.144  Sum_probs=150.5

Q ss_pred             CCCceeeecc-cc--ccccceeeeee---c----ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643            1 MCGDSTNWDE-DA--YRKSILKEREI---L----TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         1 ~dG~v~iw~~-~~--~~~~~~~~~~~---~----~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      .||.||||+. ..  .+.+++..+.+   +    .+.=.-+.|...   .|.++++ +.-..|+|||....         
T Consensus      1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~---~G~Ll~t-Gd~r~IRIWDa~~E--------- 1197 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ---SGHLLVT-GDVRSIRIWDAHKE--------- 1197 (1387)
T ss_pred             cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhh---CCeEEec-CCeeEEEEEecccc---------
Confidence            3899999972 11  22233332221   1    111133566662   4555544 55789999999873         


Q ss_pred             Ccccceeeecccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           71 NSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                                .....+. +-...|+++.-.... ++.++.|..||+|++||.+.......+.....+...          
T Consensus      1198 ----------~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~---------- 1256 (1387)
T KOG1517|consen 1198 ----------QVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV---------- 1256 (1387)
T ss_pred             ----------eeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCc----------
Confidence                      2222222 234456666554433 249999999999999998764333222222222111          


Q ss_pred             CCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEE--EeecCC--c-ceEEEEEcCCCcEEEEecCCC
Q 023643          150 KGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKM--VFKGHS--D-YLHCIVARNSTNQIVTGSEDG  223 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~--~-~i~~i~~~~~~~~l~~~~~d~  223 (279)
                                ..|..+.+.+.|- .|++|+.+|.|++||++......  ....|.  + .++++..+++...+++|+. +
T Consensus      1257 ----------~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1257 ----------EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred             ----------ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence                      1267888887665 59999999999999999752222  222232  3 5899999999999999998 9


Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .|+||++. |+.+..+.... ..+......+.|++|+|..-.||+|+.|.+|.+|.
T Consensus      1326 ~ikIy~~~-G~~l~~~k~n~-~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1326 LIKIYSLS-GEQLNIIKYNP-GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             eEEEEecC-hhhhcccccCc-ccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            99999974 66666654321 11223345679999999999999999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=2.5e-17  Score=122.39  Aligned_cols=214  Identities=14%  Similarity=0.153  Sum_probs=152.8

Q ss_pred             CCceeeecccccc--ccceeeeeecccceEEEEECCCCCCCCCEEEEecCC--CcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD--GSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      +|.+.+|..+...  ...+..+..+ .++..+.-+|.   +...+|+|+..  ..+.|||++...  ..+...+...+.+
T Consensus       124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRL  197 (412)
T ss_pred             CCcEEEEeccCCccccccceeeecC-CceeeeccCCC---CCceEecCchhcccceeeeecccce--eeeeccCCCCccc
Confidence            6889999877433  1223333333 56777887873   67788889998  899999999862  2222222211111


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      -       ++ -.-.++++.|.+......|+++..-+.+++||++..+.             |+..+....         
T Consensus       198 ~-------Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------PV~~fd~~E---------  247 (412)
T KOG3881|consen  198 G-------LR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------PVAQFDFLE---------  247 (412)
T ss_pred             c-------ce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------ceeEecccc---------
Confidence            0       00 11235678898873334899999999999999874322             222221111         


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                        ..++++...|.++.+++|..-+.+..+|++.++.... +++..+.|+++..+|.+.++++++.|+.|||+|+.+.+++
T Consensus       248 --~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  248 --NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             --CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence              1378999999999999999999999999999988876 8899999999999999999999999999999999997777


Q ss_pred             EEecCCccccccCcceeeeEEEEcCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ....         -...++++.+.++
T Consensus       326 ~kvY---------vKs~lt~il~~~~  342 (412)
T KOG3881|consen  326 HKVY---------VKSRLTFILLRDD  342 (412)
T ss_pred             hhhh---------hhccccEEEecCC
Confidence            6652         2234566666554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=8.2e-18  Score=129.96  Aligned_cols=199  Identities=13%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.+.+-+-.+   ...+....|.+.+.+-.|+|    +|.-|++++.||.|++|.-..                    -
T Consensus        84 DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~----dGtgLlt~GEDG~iKiWSrsG--------------------M  136 (737)
T KOG1524|consen   84 DGRFVILNKSA---RVERSISAHAAAISSGRWSP----DGAGLLTAGEDGVIKIWSRSG--------------------M  136 (737)
T ss_pred             CceEEEecccc---hhhhhhhhhhhhhhhcccCC----CCceeeeecCCceEEEEeccc--------------------h
Confidence            55555555333   33456678999999999999    999999999999999999764                    3


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ...++.....+|.|++|.|+.+ +.+.+.+  +.+.|--+..   ...+...+.|                      .+-
T Consensus       137 LRStl~Q~~~~v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~---n~k~i~WkAH----------------------DGi  188 (737)
T KOG1524|consen  137 LRSTVVQNEESIRCARWAPNSN-SIVFCQG--GHISIKPLAA---NSKIIRWRAH----------------------DGL  188 (737)
T ss_pred             HHHHHhhcCceeEEEEECCCCC-ceEEecC--CeEEEeeccc---ccceeEEecc----------------------CcE
Confidence            3445556778899999999987 3455444  4455444321   1222222222                      123


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |.++.|++..+.+++|+.|-..++||.. |..+..-..|+.+|++++|.|+ ..++.+|.+ ++|            +. 
T Consensus       189 iL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~-  252 (737)
T KOG1524|consen  189 VLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FS-  252 (737)
T ss_pred             EEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee------------ec-
Confidence            7899999999999999999999999975 7788877889999999999999 666655532 233            22 


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                            ....+.|..++||+||..+++|+..|.+.+
T Consensus       253 ------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  253 ------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence                  334467889999999999999999887653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=2.8e-17  Score=119.20  Aligned_cols=189  Identities=13%  Similarity=0.114  Sum_probs=147.2

Q ss_pred             Cceeeecccccc-ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            3 GDSTNWDEDAYR-KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         3 G~v~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ..|.||...+.. .+...++..|...|+.+.|+|    ..+.|++++.|..-++|....+..                .+
T Consensus        32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap----~snrIvtcs~drnayVw~~~~~~~----------------Wk   91 (361)
T KOG1523|consen   32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP----KSNRIVTCSHDRNAYVWTQPSGGT----------------WK   91 (361)
T ss_pred             ceEEEEEecCCCCceeceehhhhCcceeEEeecC----CCCceeEccCCCCccccccCCCCe----------------ec
Confidence            467788876666 667888999999999999999    899999999999999999843211                56


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      +...+..+...++++.|+|.++  .|++||....|.||-++....-    -...+..+|+.                 ..
T Consensus        92 ptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdW----WVsKhikkPir-----------------St  148 (361)
T KOG1523|consen   92 PTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDW----WVSKHIKKPIR-----------------ST  148 (361)
T ss_pred             cceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccce----ehhhhhCCccc-----------------cc
Confidence            6667777999999999999998  9999999999999987532111    11111112211                 13


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecC-----C-------------CcEEEEeecCCcceEEEEEcCCCcEEEEecCCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVE-----S-------------SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG  223 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~-------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  223 (279)
                      |++++|+|++-+|++|+.|+..+++..-     .             |++..++....+.+..+.|+|+|..|+-.+.|.
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds  228 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS  228 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence            7999999999999999999999998642     1             233344445668899999999999999999999


Q ss_pred             eEEEEeCCCCc
Q 023643          224 TARIWDCKSGK  234 (279)
Q Consensus       224 ~i~vwd~~~~~  234 (279)
                      .+.+=|.....
T Consensus       229 ~v~~~da~~p~  239 (361)
T KOG1523|consen  229 TVSFVDAAGPS  239 (361)
T ss_pred             ceEEeecCCCc
Confidence            99998876543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=3.5e-18  Score=120.72  Aligned_cols=172  Identities=16%  Similarity=0.202  Sum_probs=126.4

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      +.+.+..+.-. ....-+|++|..+|.+.+||+.++.....+...         .+.+.....|.++|.++.+.+.-.  
T Consensus       151 gsvmc~~~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~---------~kv~~~~ash~qpvlsldyas~~~--  218 (323)
T KOG0322|consen  151 GSVMCQDKDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS---------SKVESPNASHKQPVLSLDYASSCD--  218 (323)
T ss_pred             Cceeeeecccc-ccceEEEEEeccCCeEEEEEccCCceeeccccc---------cccccchhhccCcceeeeechhhc--
Confidence            44555554321 012235678889999999999985322211111         233344567999999999998665  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .=++|+.+..+..|+++.....-....        ..++.+             ..|..+.+-||++.+++++.|+.|++
T Consensus       219 rGisgga~dkl~~~Sl~~s~gslq~~~--------e~~lkn-------------pGv~gvrIRpD~KIlATAGWD~RiRV  277 (323)
T KOG0322|consen  219 RGISGGADDKLVMYSLNHSTGSLQIRK--------EITLKN-------------PGVSGVRIRPDGKILATAGWDHRIRV  277 (323)
T ss_pred             CCcCCCccccceeeeeccccCcccccc--------eEEecC-------------CCccceEEccCCcEEeecccCCcEEE
Confidence            678888899999999864311111000        001111             13678899999999999999999999


Q ss_pred             EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      |.-++..++..++.|.+.|.+++|+|+...+++++.|++|.+|++
T Consensus       278 yswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  278 YSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=9.2e-17  Score=119.41  Aligned_cols=192  Identities=17%  Similarity=0.132  Sum_probs=148.2

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCC--CcEEEe
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD--GRICGW  119 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iw  119 (279)
                      ..|++|-.+|.+.+|....+...               ..+...+..+ ..+..+.-++..+ ..+++||..  ..+.+|
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~h---------------ss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLH---------------SSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIW  178 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccc---------------cccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeee
Confidence            46778889999999999853210               1122223323 3466677777666 467779988  899999


Q ss_pred             ecCCCccCcceeeecc---C---cccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeEEEecCCCeEEEEecCCC
Q 023643          120 RWKEFTESKVPINLQG---N---HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAIFSAAGDSCAYCWDVESS  191 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~  191 (279)
                      |++..   ..+..-+.   .   -..|+                   +++.+.|-+.  ...|++++.-+.+++||++.+
T Consensus       179 dle~~---~qiw~aKNvpnD~L~LrVPv-------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q  236 (412)
T KOG3881|consen  179 DLEQS---KQIWSAKNVPNDRLGLRVPV-------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ  236 (412)
T ss_pred             ecccc---eeeeeccCCCCccccceeee-------------------eeccceecCCCCCceEEEEecceeEEEecCccc
Confidence            98653   21111111   1   11122                   3678899887  789999999999999999875


Q ss_pred             -cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          192 -RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       192 -~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                       +++..|..-+.+++++...|.++++++|..-|.+..||++.++......       .+..+.|+++..+|..++|++++
T Consensus       237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-------KGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-------CCccCCcceEEEcCCCceEEeec
Confidence             6888888888999999999999999999999999999999999887731       67888999999999999999999


Q ss_pred             CcceEEeCC
Q 023643          271 ATNYVILFS  279 (279)
Q Consensus       271 ~d~~i~~wd  279 (279)
                      -|..+||+|
T Consensus       310 LDRyvRIhD  318 (412)
T KOG3881|consen  310 LDRYVRIHD  318 (412)
T ss_pred             cceeEEEee
Confidence            999999987

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=2.2e-16  Score=114.47  Aligned_cols=173  Identities=14%  Similarity=0.189  Sum_probs=124.5

Q ss_pred             CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce
Q 023643           51 GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP  130 (279)
Q Consensus        51 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  130 (279)
                      ..|.|||=..                   .+++..+. -..+|.++.+.++    .|+..- .+.|.+|...+.......
T Consensus        75 NkviIWDD~k-------------------~~~i~el~-f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~  129 (346)
T KOG2111|consen   75 NKVIIWDDLK-------------------ERCIIELS-FNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHV  129 (346)
T ss_pred             ceEEEEeccc-------------------CcEEEEEE-eccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheee
Confidence            4799999433                   34444444 5678999999887    455443 578999997643222221


Q ss_pred             eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-C-eEEE-ecCCCeEEEEecCCCcE--EEEeecCCcceE
Q 023643          131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-G-AIFS-AAGDSCAYCWDVESSRI--KMVFKGHSDYLH  205 (279)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~~-~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~  205 (279)
                      .....+...                        -++..|.. . +|+. |-.-|.|.|-|+...+.  ...+..|.+.|.
T Consensus       130 ~et~~NPkG------------------------lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Ia  185 (346)
T KOG2111|consen  130 IETRSNPKG------------------------LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIA  185 (346)
T ss_pred             eecccCCCc------------------------eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCcee
Confidence            111111111                        12233322 2 3332 45569999999986655  467889999999


Q ss_pred             EEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          206 CIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       206 ~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      |++.+-+|..+|++|..|+ |||||..+|+.+..++.      ......|.+++|+|+..+||++|..|++++|
T Consensus       186 cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  186 CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence            9999999999999999998 79999999999999863      2234689999999999999999999999987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.4e-16  Score=115.52  Aligned_cols=229  Identities=14%  Similarity=0.187  Sum_probs=140.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-ccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-PLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~   80 (279)
                      |-.||+||-+......++.  .....|++++|-|.   .+..|++|+..| |.+|......... ...  .....    .
T Consensus       119 ddvVriy~ksst~pt~Lks--~sQrnvtclawRPl---saselavgCr~g-IciW~~s~tln~~r~~~--~~s~~----~  186 (445)
T KOG2139|consen  119 DDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPL---SASELAVGCRAG-ICIWSDSRTLNANRNIR--MMSTH----H  186 (445)
T ss_pred             CcEEEEeccCCCCCceecc--hhhcceeEEEeccC---Ccceeeeeecce-eEEEEcCcccccccccc--ccccc----c
Confidence            6688999966633222222  23467999999995   677888888765 8999886531110 000  00000    1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ..+..-.+| .+|+++.|.+++.  .+++++. |..|.|||.++.......  ..+                       .
T Consensus       187 ~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~--~~g-----------------------l  238 (445)
T KOG2139|consen  187 LQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI--PKG-----------------------L  238 (445)
T ss_pred             hhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc--ccC-----------------------C
Confidence            111222345 6899999999998  8888875 678999998765332222  111                       0


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC-ce--
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG-KC--  235 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~--  235 (279)
                      +.++-+.|+||+.+|+.++-|+..++|+... ....+-. ...+.|...+|+|+|++|+..+. |.-++|.+... +.  
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~  316 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSV  316 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcc
Confidence            1267899999999999999999999996543 3333322 24558999999999988665432 23344444221 10  


Q ss_pred             -E------EEe---cCCccccc---cCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          236 -I------KVI---DPVKDKQL---KGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       236 -~------~~~---~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                       .      ..+   +.++....   .--.+...+++|+|.|.+||+.-..
T Consensus       317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence             0      000   00000000   1123578999999999999987543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.3e-16  Score=117.64  Aligned_cols=199  Identities=13%  Similarity=0.125  Sum_probs=139.7

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNE  103 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  103 (279)
                      ...+..++|++    .-..+|++..|..|++|+-...                    ....++ ..+..|++++|-|.+.
T Consensus        98 ~~dlr~~aWhq----H~~~fava~nddvVriy~ksst--------------------~pt~Lks~sQrnvtclawRPlsa  153 (445)
T KOG2139|consen   98 EIDLRGVAWHQ----HIIAFAVATNDDVVRIYDKSST--------------------CPTKLKSVSQRNVTCLAWRPLSA  153 (445)
T ss_pred             hcceeeEeech----hhhhhhhhccCcEEEEeccCCC--------------------CCceecchhhcceeEEEeccCCc
Confidence            34678899999    6778899999999999998752                    122232 2356799999999876


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCe
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSC  182 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~  182 (279)
                       ..|+.|+. +-|.+|..+..............+...+..  .+++          ..|+++.|++||..+++++. |..
T Consensus       154 -selavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~--~pgh----------~pVtsmqwn~dgt~l~tAS~gsss  219 (445)
T KOG2139|consen  154 -SELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQ--DPGH----------NPVTSMQWNEDGTILVTASFGSSS  219 (445)
T ss_pred             -ceeeeeec-ceeEEEEcCcccccccccccccccchhhee--CCCC----------ceeeEEEEcCCCCEEeecccCcce
Confidence             36777765 559999976433322222222222222211  1111          24899999999999998775 678


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      |.|||.+++..+.......+.+.-+.||||+.+|+++..|+..++|...........        .--.+.|+..+|+|+
T Consensus       220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw--------~lgsgrvqtacWspc  291 (445)
T KOG2139|consen  220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW--------ILGSGRVQTACWSPC  291 (445)
T ss_pred             EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce--------eccCCceeeeeecCC
Confidence            999999998776655445677889999999999999999999999965443222222        122238999999999


Q ss_pred             CCEEEEE
Q 023643          263 ESWLVRV  269 (279)
Q Consensus       263 ~~~l~~~  269 (279)
                      |++|+-+
T Consensus       292 GsfLLf~  298 (445)
T KOG2139|consen  292 GSFLLFA  298 (445)
T ss_pred             CCEEEEE
Confidence            9876543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.76  E-value=1.6e-16  Score=113.55  Aligned_cols=106  Identities=16%  Similarity=0.221  Sum_probs=85.7

Q ss_pred             CceeEEEcCCCCeEEEe--cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC---CCeEEEEeCCCCce
Q 023643          161 ENNAIAVDPQGGAIFSA--AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---DGTARIWDCKSGKC  235 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~  235 (279)
                      .|.+++|+|+++.|++.  ..+..|.+||++ ++.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            37999999999987654  456799999997 66666664  567789999999999999864   46799999998888


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd  279 (279)
                      +....         | ..++.++|+|+|++|++++.      |+.++||+
T Consensus       138 i~~~~---------~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  138 ISTFE---------H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             eeccc---------c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            87762         2 23689999999999998864      77788884

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=2e-17  Score=127.86  Aligned_cols=173  Identities=15%  Similarity=0.223  Sum_probs=134.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ..+.|+.+++||.+.|.+-.                    ++..+.+..|.+.+.+-.|+|+|.  -|+|++.||.|++|
T Consensus        74 ~~d~~~i~s~DGkf~il~k~--------------------~rVE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiW  131 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNKS--------------------ARVERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIW  131 (737)
T ss_pred             CcceEEEEcCCceEEEeccc--------------------chhhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEE
Confidence            34678889999999998765                    466677888999999999999998  89999999999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      .-.-    .....+. ...                     ..|+|++|.|+.+.++-+. .+.+.|=-+.....+-..+.
T Consensus       132 SrsG----MLRStl~-Q~~---------------------~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkA  184 (737)
T KOG1524|consen  132 SRSG----MLRSTVV-QNE---------------------ESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRA  184 (737)
T ss_pred             eccc----hHHHHHh-hcC---------------------ceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEec
Confidence            8321    1111111 111                     1379999999877554333 35566666665666667889


Q ss_pred             CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       200 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      |.+-|.++.|++..+.+++|++|-..+|||- .|+.+..-        ..|.-+|++++|.|+ ..++.+|.
T Consensus       185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S--------~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTS--------AAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             cCcEEEEeecCccccceeecCCceeEEeecc-cCcccccC--------Chhccceeeeeeccc-cceeeeee
Confidence            9999999999999999999999999999995 56666665        578889999999999 66666654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=4.6e-19  Score=143.21  Aligned_cols=200  Identities=17%  Similarity=0.263  Sum_probs=148.9

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      ++.+.+|...|+|+.|..    .|.++++|+.|..++||...+                   ..+....+||.+.++.++
T Consensus       183 ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et-------------------~~~lAs~rGhs~ditdla  239 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMET-------------------ARCLASCRGHSGDITDLA  239 (1113)
T ss_pred             HHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccc-------------------hhhhccCCCCccccchhc
Confidence            556779999999999999    899999999999999999988                   788899999999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      .+.+..  ++++++.|..|++|.+.+.   ..+..+.++.                      ++|++++|+|-.    +.
T Consensus       240 vs~~n~--~iaaaS~D~vIrvWrl~~~---~pvsvLrght----------------------gavtaiafsP~~----ss  288 (1113)
T KOG0644|consen  240 VSSNNT--MIAAASNDKVIRVWRLPDG---APVSVLRGHT----------------------GAVTAIAFSPRA----SS  288 (1113)
T ss_pred             cchhhh--hhhhcccCceEEEEecCCC---chHHHHhccc----------------------cceeeeccCccc----cC
Confidence            998887  9999999999999998654   2333333322                      248999999953    67


Q ss_pred             cCCCeEEEEecCCC--------------cEEEEee----------------cCCcceEEEEEcCCC-----------cEE
Q 023643          178 AGDSCAYCWDVESS--------------RIKMVFK----------------GHSDYLHCIVARNST-----------NQI  216 (279)
Q Consensus       178 ~~d~~i~i~d~~~~--------------~~~~~~~----------------~~~~~i~~i~~~~~~-----------~~l  216 (279)
                      +.||++++||.+-.              ..+..+.                .......+++|....           .+.
T Consensus       289 s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~  368 (1113)
T KOG0644|consen  289 SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIV  368 (1113)
T ss_pred             CCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccc
Confidence            88999999998711              0111100                000011122222222           233


Q ss_pred             EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      +++-.+-.+++|++.+|++.+.+        .+|...+..+.++|-+ +...+++.||...|||
T Consensus       369 ~~ar~~~~~~vwnl~~g~l~H~l--------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  369 VTARNDHRLCVWNLYTGQLLHNL--------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             eeeeeeeEeeeeecccchhhhhh--------cccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence            33444556888888888888887        7888899999999954 5556889999999997

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=9.3e-17  Score=133.23  Aligned_cols=229  Identities=18%  Similarity=0.199  Sum_probs=151.6

Q ss_pred             ceeeeccccccccceeeee---ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCC--cccccccCCcccceee
Q 023643            4 DSTNWDEDAYRKSILKERE---ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCI--SKLPLGLSNSKVQQLL   78 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~   78 (279)
                      .|+|||.+..+.  +..+.   .....|+.+.+-..  .|..++++|+.||.||||+-....  ....+.          
T Consensus      1087 ~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT---------- 1152 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINE--QDDALLLTASSDGVIRIWKDYADKWKKPELVT---------- 1152 (1387)
T ss_pred             eEEEEecccCce--eccccCCCCCCCccceeeeecc--cchhheeeeccCceEEEecccccccCCceeEE----------
Confidence            578999766542  43332   33567888888652  367799999999999999865431  111000          


Q ss_pred             ecccccc-ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           79 GIEPDGF-LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        79 ~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      ....+.. +.+-.+.=.-+.|.....  +|+++|.-..|+|||.....   ...........                  
T Consensus      1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t------------------ 1209 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQ---VVADIPYGSST------------------ 1209 (1387)
T ss_pred             eeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccce---eEeecccCCCc------------------
Confidence            0111111 112222224567877665  77777778999999976431   11111111110                  


Q ss_pred             CCCCceeEEEc-CCCCeEEEecCCCeEEEEecCCCc---EEEEeecCCcc--eEEEEEcCCCc-EEEEecCCCeEEEEeC
Q 023643          158 PVPENNAIAVD-PQGGAIFSAAGDSCAYCWDVESSR---IKMVFKGHSDY--LHCIVARNSTN-QIVTGSEDGTARIWDC  230 (279)
Q Consensus       158 ~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~d~~i~vwd~  230 (279)
                         .++++.-+ +.|+.+++|..||.|++||.+...   .+...+.|+..  |..+.+.+.|- .|++|+.||.|++||+
T Consensus      1210 ---~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1210 ---LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             ---cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence               14555544 346899999999999999998653   56677788877  99999988764 4999999999999999


Q ss_pred             CCCceEEEecCCccccccCcc---eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          231 KSGKCIKVIDPVKDKQLKGVI---SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |.......+..      ..|.   +.++++..+++...+|+|+. +.|.||+
T Consensus      1287 R~~~~e~~~~i------v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1287 RMSSKETFLTI------VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             ccCccccccee------eeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            97522222211      2222   25899999999999999998 9999996

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.3e-15  Score=106.74  Aligned_cols=220  Identities=13%  Similarity=0.170  Sum_probs=143.1

Q ss_pred             CCceeeeccccc--------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643            2 CGDSTNWDEDAY--------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK   73 (279)
Q Consensus         2 dG~v~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   73 (279)
                      +|+|-+..++..        ....+.....|.++|+.++|..      .+|++|+. |.|+=|.-+........      
T Consensus        31 ~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d------~~Lls~gd-G~V~gw~W~E~~es~~~------   97 (325)
T KOG0649|consen   31 FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD------DFLLSGGD-GLVYGWEWNEEEESLAT------   97 (325)
T ss_pred             CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh------hheeeccC-ceEEEeeehhhhhhccc------
Confidence            577777765421        1223445678999999999986      56667654 99999987754321100      


Q ss_pred             cceeee-ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           74 VQQLLG-IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        74 ~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                       ...+. ..|.+.-...-..|+++...|..+  -+++++.|+.++-||++++   .....+.++..              
T Consensus        98 -K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G---~i~r~~rGHtD--------------  157 (325)
T KOG0649|consen   98 -KRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDG---RIQREYRGHTD--------------  157 (325)
T ss_pred             -hhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCC---EEEEEEcCCcc--------------
Confidence             00000 111111011234689999999887  7777779999999998754   44555555432              


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC----------CcceEEEEEcCCCcEEEEecCC
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH----------SDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                              .+.++.--.....+++|+.||++++||+++++.+..+...          ..+|.+++.  +..+++.|+ .
T Consensus       158 --------YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-G  226 (325)
T KOG0649|consen  158 --------YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-G  226 (325)
T ss_pred             --------eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-C
Confidence                    2567766444567999999999999999999988876532          124555554  467887765 5


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI  276 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  276 (279)
                      ..+.+|.+++.++...++.      .   ..+..+.|..  ..+++++..+.|.
T Consensus       227 p~lslwhLrsse~t~vfpi------p---a~v~~v~F~~--d~vl~~G~g~~v~  269 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPI------P---ARVHLVDFVD--DCVLIGGEGNHVQ  269 (325)
T ss_pred             CceeEEeccCCCceEEEec------c---cceeEeeeec--ceEEEecccccee
Confidence            5699999999999888843      2   3466667753  3455555444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.75  E-value=4.5e-16  Score=111.21  Aligned_cols=156  Identities=18%  Similarity=0.258  Sum_probs=110.1

Q ss_pred             EEEEECCCCCCCCCEEEEecC----------CCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEEEE
Q 023643           29 FRTVWGPSKDGSPDTIVIASS----------DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYDVK   97 (279)
Q Consensus        29 ~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~   97 (279)
                      ..+.|+|    +|++|++-..          -|...+|.++..                  ..+...+.- ..++|.+++
T Consensus         9 ~~~~W~~----~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~------------------~~~~~~i~l~~~~~I~~~~   66 (194)
T PF08662_consen    9 AKLHWQP----SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK------------------NIPVESIELKKEGPIHDVA   66 (194)
T ss_pred             EEEEecc----cCCEEEEEEEEeeccCcceEEeeEEEEEEecC------------------CCccceeeccCCCceEEEE
Confidence            4678999    7877766433          134556655432                  233333432 456799999


Q ss_pred             ecCCCCceEEE--EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           98 FYGGNEDALLL--SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        98 ~~~~~~~~~l~--s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      |+|+++  .|+  .|..++.|.+||++    ...+..+...                        .++.+.|+|+|++++
T Consensus        67 WsP~g~--~favi~g~~~~~v~lyd~~----~~~i~~~~~~------------------------~~n~i~wsP~G~~l~  116 (194)
T PF08662_consen   67 WSPNGN--EFAVIYGSMPAKVTLYDVK----GKKIFSFGTQ------------------------PRNTISWSPDGRFLV  116 (194)
T ss_pred             ECcCCC--EEEEEEccCCcccEEEcCc----ccEeEeecCC------------------------CceEEEECCCCCEEE
Confidence            999998  554  34567899999974    2222222211                        257899999999999


Q ss_pred             EecC---CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC------CCeEEEEeCCCCceEEEe
Q 023643          176 SAAG---DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE------DGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       176 ~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~  239 (279)
                      +++.   .|.|.+||.++.+.+..++ |. .+..++|+|+|++|+++..      |+.++||+. .|+.+...
T Consensus       117 ~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  117 LAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            8864   4679999999888888775 33 4689999999999998874      788999997 57777665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=1e-17  Score=127.15  Aligned_cols=210  Identities=11%  Similarity=0.126  Sum_probs=155.5

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc-------e-----------eee--cccccc
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ-------Q-----------LLG--IEPDGF   85 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~-----------~~~--~~~~~~   85 (279)
                      -.-+.+.|+.    +|..|+.|+.-|.|-.+|..++.....+.....-.+       +           +..  +..++-
T Consensus       130 FGPY~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC  205 (545)
T KOG1272|consen  130 FGPYHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC  205 (545)
T ss_pred             cCCeeeeecC----CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee
Confidence            3456788888    999999999999999999988654432211111000       0           000  444455


Q ss_pred             ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643           86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI  165 (279)
Q Consensus        86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  165 (279)
                      ++.| .+|..+.|.|..-  +|++++..|.++--|+..+.....+..-.+                         .+..+
T Consensus       206 lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-------------------------~~~vm  257 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAG-------------------------RTDVM  257 (545)
T ss_pred             hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCC-------------------------ccchh
Confidence            5544 3588999999986  889999999999999875432222211111                         25677


Q ss_pred             EEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643          166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      .-+|-+..+-+|...|+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|||++.-..+.++..    
T Consensus       258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----  333 (545)
T KOG1272|consen  258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----  333 (545)
T ss_pred             hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----
Confidence            8889888999999999999999999999999999999999999999999999999999999999998877776632    


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          246 QLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                           ..+...++||..|  +++.+....|.+|
T Consensus       334 -----p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  334 -----PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             -----CCCcccccccccc--ceeeecCCeeeee
Confidence                 2356778888655  4444455567777

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=4.5e-15  Score=109.83  Aligned_cols=156  Identities=12%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc---CCccCeEEEEecCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH---GHDGPAYDVKFYGG  101 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~  101 (279)
                      ..+|.++.++.      ++|++.-.+ .|.|||++++                   +.++++.   .+...+.++++++.
T Consensus        87 pt~IL~VrmNr------~RLvV~Lee-~IyIydI~~M-------------------klLhTI~t~~~n~~gl~AlS~n~~  140 (391)
T KOG2110|consen   87 PTSILAVRMNR------KRLVVCLEE-SIYIYDIKDM-------------------KLLHTIETTPPNPKGLCALSPNNA  140 (391)
T ss_pred             CCceEEEEEcc------ceEEEEEcc-cEEEEecccc-------------------eeehhhhccCCCccceEeeccCCC
Confidence            46788888876      566665554 4999999985                   4444443   35555666666666


Q ss_pred             CCceEEEEe--eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          102 NEDALLLSC--GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       102 ~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      +.  +++--  -..|.|.+||+.+.+...   .+.. |.                     +.+-+++|+++|.+||+++.
T Consensus       141 n~--ylAyp~s~t~GdV~l~d~~nl~~v~---~I~a-H~---------------------~~lAalafs~~G~llATASe  193 (391)
T KOG2110|consen  141 NC--YLAYPGSTTSGDVVLFDTINLQPVN---TINA-HK---------------------GPLAALAFSPDGTLLATASE  193 (391)
T ss_pred             Cc--eEEecCCCCCceEEEEEcccceeee---EEEe-cC---------------------CceeEEEECCCCCEEEEecc
Confidence            55  77643  336899999976532222   2221 21                     23789999999999999999


Q ss_pred             CCe-EEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          180 DSC-AYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       180 d~~-i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      .|+ ||++.+.+|+.+.+|+..  ...|.+++|+|++.+|++.|..++|.||.+...
T Consensus       194 KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  194 KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            997 699999999999999743  356889999999999999999999999998653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=6.9e-17  Score=121.11  Aligned_cols=186  Identities=14%  Similarity=0.106  Sum_probs=131.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||++|+|+....  ..+.....|..+|.++.|+|    |+.+|++-+.| ..+||+.+++                   
T Consensus       164 ~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~----dgk~lasig~d-~~~VW~~~~g-------------------  217 (398)
T KOG0771|consen  164 TDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSP----DGKFLASIGAD-SARVWSVNTG-------------------  217 (398)
T ss_pred             ccceEEEEecCcc--hhhhhhHhhcCccccceeCC----CCcEEEEecCC-ceEEEEeccC-------------------
Confidence            4899999994443  33445667889999999999    99999999999 9999999984                   


Q ss_pred             ccccccc--CCccCeEEEEecCCCCc--e-EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           81 EPDGFLH--GHDGPAYDVKFYGGNED--A-LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        81 ~~~~~~~--~h~~~v~~~~~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                      .++....  ........+.|+.++.+  - .++....-+.|+.|++...... .......                   .
T Consensus       218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~-------------------~  277 (398)
T KOG0771|consen  218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK-------------------K  277 (398)
T ss_pred             chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh-------------------h
Confidence            2222222  12233555667665511  1 2333444567777776432221 1111000                   0


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      ......|++++.+++|++++.|+.||.|-+++..+-+.++.. +.|...|+.+.|+|+.+++++.+.|....|..+.-
T Consensus       278 ~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  278 IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            011123899999999999999999999999999887776655 46999999999999999999999999988887654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=6.7e-16  Score=125.64  Aligned_cols=238  Identities=14%  Similarity=0.161  Sum_probs=160.0

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc--------
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV--------   74 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------   74 (279)
                      -.|+||...++  .++..+..|..++..+.+.|... .-.++.+.+.||.|++||.........+...-...        
T Consensus        37 ~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~-~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~  113 (792)
T KOG1963|consen   37 NFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSE-NANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ  113 (792)
T ss_pred             CEEEEEecchH--hhhhhcccccCccceeeecCCCc-cceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence            46788887777  45778999999999999998411 12567799999999999998765444221111100        


Q ss_pred             -------------ceeee-------------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecC
Q 023643           75 -------------QQLLG-------------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWK  122 (279)
Q Consensus        75 -------------~~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  122 (279)
                                   ...+.                   ......+.+|.. -.++.+++.+.   +...-.+..+.+|...
T Consensus       114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge---~~~i~~~~~~~~~~v~  189 (792)
T KOG1963|consen  114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGE---FKGIVHMCKIHIYFVP  189 (792)
T ss_pred             hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCce---EEEEEEeeeEEEEEec
Confidence                         00000                   011111112222 24566666664   3333345567777764


Q ss_pred             CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC----CcEEEEee
Q 023643          123 EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES----SRIKMVFK  198 (279)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~  198 (279)
                      .............+|.                     ..+++.+++|+++++++|..||.|.+|.--.    ....+.+.
T Consensus       190 ~~~~~~~~~~~~~~Ht---------------------f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH  248 (792)
T KOG1963|consen  190 KHTKHTSSRDITVHHT---------------------FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH  248 (792)
T ss_pred             ccceeeccchhhhhhc---------------------ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence            3221111111111111                     1258999999999999999999999997432    12345566


Q ss_pred             cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          199 GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       199 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      =|...|.+++|+++|.+|++|+.++.+.+|.+.+++  +++-       ..-.++|..+.++||+.+.+...+|+.|.+
T Consensus       249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL-------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL-------PRLGSPILHIVVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             ecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc-------cccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence            789999999999999999999999999999999987  3332       455678999999999999999999998875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.7e-16  Score=128.03  Aligned_cols=195  Identities=12%  Similarity=0.119  Sum_probs=131.1

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ..|++||+++.....+..+.+|   ...++|+|    |++.|+.++ .+|.+.||.++..                  ..
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP----DG~~La~~~~~~g~~~Iy~~d~~------------------~~  282 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGH---NGAPAFSP----DGSRLAFASSKDGVLNIYVMGAN------------------GG  282 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCc---cCceeECC----CCCEEEEEEecCCcEEEEEEECC------------------CC
Confidence            3588999887654444444443   34689999    899888764 6887766644321                  11


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEE-eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ....+..+...+....|+|+++  .|+. +..+|..+||+++........  . ...                       
T Consensus       283 ~~~~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~--l-~~~-----------------------  334 (429)
T PRK01742        283 TPSQLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASL--V-GGR-----------------------  334 (429)
T ss_pred             CeEeeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEE--e-cCC-----------------------
Confidence            1233445666678899999998  6554 446788999987532211111  0 000                       


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC--CCCceEEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC--KSGKCIKV  238 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~--~~~~~~~~  238 (279)
                      . ....|+|+++.++.++.++ +.+||+.+++.......+  ....+.|+|+|++|+.++.++.+.+|++  .+|+....
T Consensus       335 ~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        335 G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            0 2457999999998887765 556999888765433222  2356789999999999999998888875  35777777


Q ss_pred             ecCCccccccCcceeeeEEEEcCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      +        ..|...+..++|+|-
T Consensus       411 l--------~~~~g~~~~p~wsp~  426 (429)
T PRK01742        411 L--------PGSDGQVKFPAWSPY  426 (429)
T ss_pred             c--------cCCCCCCCCcccCCC
Confidence            7        566677888999984

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=7.9e-17  Score=120.23  Aligned_cols=209  Identities=11%  Similarity=0.062  Sum_probs=144.4

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYD   95 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~   95 (279)
                      +.+.+.+|.+.|.++.|+.    ++++||+|+.|..+++|++........             .+++..... |...|.|
T Consensus        48 ~qKD~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~-------------~KPI~~~~~~H~SNIF~  110 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKT-------------PKPIGVMEHPHRSNIFS  110 (609)
T ss_pred             hhhhhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcC-------------CCCceeccCccccceEE
Confidence            3456778999999999999    899999999999999999875211111             355555543 6689999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      +.|.....  ++.+|+.+++|.+.|+++.+   .+.....+           ..         .+.|..+..+|..+.|+
T Consensus       111 L~F~~~N~--~~~SG~~~~~VI~HDiEt~q---si~V~~~~-----------~~---------~~~VY~m~~~P~DN~~~  165 (609)
T KOG4227|consen  111 LEFDLENR--FLYSGERWGTVIKHDIETKQ---SIYVANEN-----------NN---------RGDVYHMDQHPTDNTLI  165 (609)
T ss_pred             EEEccCCe--eEecCCCcceeEeeecccce---eeeeeccc-----------Cc---------ccceeecccCCCCceEE
Confidence            99998877  99999999999999986532   11111110           00         11378899999999999


Q ss_pred             EecCCCeEEEEecCCCc-EEEEe--ecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCce-EEEecCCccccccCc
Q 023643          176 SAAGDSCAYCWDVESSR-IKMVF--KGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKC-IKVIDPVKDKQLKGV  250 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~-~~~~~--~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~  250 (279)
                      +.+.++.|.+||.+... +...+  .........+.|+|. ..+|++.+..+-+-+||.+..+. +......  ..+...
T Consensus       166 ~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~--~~L~~~  243 (609)
T KOG4227|consen  166 VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF--KGLPQE  243 (609)
T ss_pred             EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc--ccCccc
Confidence            99999999999998654 22222  223455678889995 67899999999999999875431 1111100  001111


Q ss_pred             ceeeeEEEEcCCCCEEEEE
Q 023643          251 ISCVSCITLDASESWLVRV  269 (279)
Q Consensus       251 ~~~v~~~~~~~~~~~l~~~  269 (279)
                      ...-.++.|+|+|..|++-
T Consensus       244 ~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  244 NTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             chhhhheeeCCCCCeehhh
Confidence            1122456788887666543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=4.2e-17  Score=127.52  Aligned_cols=110  Identities=14%  Similarity=0.185  Sum_probs=97.8

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKV  238 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~  238 (279)
                      +.|.++.|+|...+|++++. ..|++||+..++.+..+......|..|+.+|.|..|+.|+.|+.+..||+.- .++.++
T Consensus       567 G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~  645 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT  645 (733)
T ss_pred             CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH
Confidence            45778999999999988875 7799999998888888887888999999999999999999999999999975 456666


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +        ..|...+++++|++.-.++++|+.||++.||
T Consensus       646 l--------r~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  646 L--------RLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             h--------hhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            6        6888999999999999999999999999886

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.8e-15  Score=122.23  Aligned_cols=203  Identities=13%  Similarity=0.152  Sum_probs=130.0

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.+||.++..   .+.+..+...+...+|+|    +++.|+..+.+   ..|.+|++.++.                  
T Consensus       185 ~l~i~D~~g~~---~~~lt~~~~~v~~p~wSp----Dg~~la~~s~~~~~~~l~~~dl~~g~------------------  239 (433)
T PRK04922        185 ALQVADSDGYN---PQTILRSAEPILSPAWSP----DGKKLAYVSFERGRSAIYVQDLATGQ------------------  239 (433)
T ss_pred             EEEEECCCCCC---ceEeecCCCccccccCCC----CCCEEEEEecCCCCcEEEEEECCCCC------------------
Confidence            57888877643   233445667899999999    89998887633   469999998632                  


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       . ..+....+...++.|+|+++ .++++.+.+|  .|++||+.....    ..+..+..                    
T Consensus       240 -~-~~l~~~~g~~~~~~~SpDG~-~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~--------------------  292 (433)
T PRK04922        240 -R-ELVASFRGINGAPSFSPDGR-RLALTLSRDGNPEIYVMDLGSRQL----TRLTNHFG--------------------  292 (433)
T ss_pred             -E-EEeccCCCCccCceECCCCC-EEEEEEeCCCCceEEEEECCCCCe----EECccCCC--------------------
Confidence             1 11222233445789999998 2334556666  588888754311    11111100                    


Q ss_pred             CCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKS  232 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~  232 (279)
                        .....+|+|+++.|+..+. ++  .|+++|+.+++..+.. .+.......+|+|+|++|+..+.++   .|.+||+.+
T Consensus       293 --~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        293 --IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             --CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence              1356799999998876653 34  4777787776644322 2333445789999999988765433   699999988


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ++.. .+.       .+  .......|+|||++|+..+.
T Consensus       370 g~~~-~Lt-------~~--~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        370 GSVR-TLT-------PG--SLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CCeE-ECC-------CC--CCCCCceECCCCCEEEEEEe
Confidence            7755 332       11  12345689999998876654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.5e-14  Score=105.17  Aligned_cols=178  Identities=15%  Similarity=0.192  Sum_probs=123.5

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      ..|-|||-...  .++.++. ...+|.++.+.+      ++|++.- .+.|.||...+.                  .+.
T Consensus        75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r------~riVvvl-~~~I~VytF~~n------------------~k~  126 (346)
T KOG2111|consen   75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRR------DRIVVVL-ENKIYVYTFPDN------------------PKL  126 (346)
T ss_pred             ceEEEEecccC--cEEEEEE-eccceeeEEEcC------CeEEEEe-cCeEEEEEcCCC------------------hhh
Confidence            35789992222  3344454 568999999988      5666654 458999999853                  233


Q ss_pred             cccccCC--ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           83 DGFLHGH--DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        83 ~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ++.+..-  ...+.+  .+|.....+|+.-| .-|.|+|-|+......                       .+....+|.
T Consensus       127 l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~  181 (346)
T KOG2111|consen  127 LHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHD  181 (346)
T ss_pred             eeeeecccCCCceEe--ecCCCCceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEccc
Confidence            3333221  222333  33333222555433 4688999998643221                       112223334


Q ss_pred             CCceeEEEcCCCCeEEEecCCCe-EEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSC-AYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      ..|.|++++.+|..+|+++..|+ |+|||..+|+++.+++.  ....|+||+|+|+..+|+++|..|+|.||.++..
T Consensus       182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            45899999999999999999997 79999999999999874  3467999999999999999999999999998763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.8e-15  Score=119.38  Aligned_cols=205  Identities=8%  Similarity=0.064  Sum_probs=130.9

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec---CCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS---SDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.+||.++...   +.+..+...+...+|+|    ||+.|+..+   .+..|.+|++.+++                 .
T Consensus       180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSP----DG~~la~~s~~~g~~~i~i~dl~~G~-----------------~  235 (429)
T PRK03629        180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGA-----------------V  235 (429)
T ss_pred             eEEEEcCCCCCC---EEeecCCCceeeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCC-----------------e
Confidence            577888777543   22333557899999999    899888654   34578999988632                 1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEE-eeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      +.+..+.++   +..+.|+|+++  .|+. .+.+|  .|.+||++....    ..+....                    
T Consensus       236 ~~l~~~~~~---~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg~~----~~lt~~~--------------------  286 (429)
T PRK03629        236 RQVASFPRH---NGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI----RQVTDGR--------------------  286 (429)
T ss_pred             EEccCCCCC---cCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCCCE----EEccCCC--------------------
Confidence            222333333   44689999998  6654 35455  488888754211    1111100                    


Q ss_pred             CCCCceeEEEcCCCCeEEEecCC-C--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCC
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGD-S--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCK  231 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~  231 (279)
                        ..+....|+|+++.|+..+.+ +  .|+++|+.+++.. .+..+........|+|+|++|+..+.+   ..|.+||+.
T Consensus       287 --~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        287 --SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             --CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence              014678999999988766643 3  4566677766543 333344455678899999998776543   358899998


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      +++.. .+..       ..  ......|+|||++|+.++.++.
T Consensus       364 ~g~~~-~Lt~-------~~--~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        364 TGGVQ-VLTD-------TF--LDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             CCCeE-EeCC-------CC--CCCCceECCCCCEEEEEEcCCC
Confidence            87644 3321       11  1245789999999998887754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.6e-15  Score=111.52  Aligned_cols=251  Identities=12%  Similarity=0.094  Sum_probs=162.4

Q ss_pred             CCceeeecccccc----cccee-eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYR----KSILK-EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      |..+++|+++..-    .+.+. .-..|...|.|++|..    ....+.+|..+++|.+-|+++.               
T Consensus        77 D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~----~N~~~~SG~~~~~VI~HDiEt~---------------  137 (609)
T KOG4227|consen   77 DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL----ENRFLYSGERWGTVIKHDIETK---------------  137 (609)
T ss_pred             cceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc----CCeeEecCCCcceeEeeecccc---------------
Confidence            4578999966421    12222 2235678999999999    7889999999999999999983               


Q ss_pred             eeecccccccc--CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEE-----------
Q 023643           77 LLGIEPDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLD-----------  143 (279)
Q Consensus        77 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----------  143 (279)
                          +.+..+.  ...+.|+.+..+|..+  .|++.+.++.|.+||.+..+......-+.. ..+.++.           
T Consensus       138 ----qsi~V~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  138 ----QSIYVANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNFYTAEFHPETPALI  210 (609)
T ss_pred             ----eeeeeecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecC-CCccceeeeecCCCceeE
Confidence                3333332  2346899999999976  999999999999999987553332222211 1111111           


Q ss_pred             --eecCCCCCccccCCC----------------CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE-EEEeecC----
Q 023643          144 --LVNHQHKGPWGALSP----------------VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI-KMVFKGH----  200 (279)
Q Consensus       144 --~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~----  200 (279)
                        .........|+...+                ...-.++.|+|.|..|++--....-.+||+.+.++ +..+...    
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY  290 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY  290 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence              111122222222111                11224677888888887766666667778766433 3333311    


Q ss_pred             --CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE---e------------cCCccccccCcceeeeEEEEcCCC
Q 023643          201 --SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV---I------------DPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       201 --~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~---~------------~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                        ...+.+++|..+ ..+++|+.+-.|++|.+.......-   +            -...-..+++|..-+..+.|+|..
T Consensus       291 ~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~  369 (609)
T KOG4227|consen  291 CNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN  369 (609)
T ss_pred             eeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence              124667777654 4599999999999998853211110   0            000112358999999999999999


Q ss_pred             CEEEEEcCcceEEeCC
Q 023643          264 SWLVRVRATNYVILFS  279 (279)
Q Consensus       264 ~~l~~~~~d~~i~~wd  279 (279)
                      .+|++.+..+.+++|+
T Consensus       370 ~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  370 NLLVSSGVENSFKLWS  385 (609)
T ss_pred             ceEeccchhhheeccc
Confidence            9999999999999995

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=5.8e-15  Score=119.49  Aligned_cols=203  Identities=12%  Similarity=0.118  Sum_probs=132.9

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.++|.++..   .+.+..|...+...+|+|    |++.|+..+.   +..|.+||+.++.                  
T Consensus       183 ~l~~~d~dg~~---~~~lt~~~~~v~~p~wSp----DG~~lay~s~~~g~~~i~~~dl~~g~------------------  237 (435)
T PRK05137        183 RLAIMDQDGAN---VRYLTDGSSLVLTPRFSP----NRQEITYMSYANGRPRVYLLDLETGQ------------------  237 (435)
T ss_pred             EEEEECCCCCC---cEEEecCCCCeEeeEECC----CCCEEEEEEecCCCCEEEEEECCCCc------------------
Confidence            56777877643   344556778899999999    8998887653   4689999998732                  


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       . ..+..+.+.+....|+|+++ .++++.+.++.  |.+||++...    ...+..+.                     
T Consensus       238 -~-~~l~~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~---------------------  289 (435)
T PRK05137        238 -R-ELVGNFPGMTFAPRFSPDGR-KVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSP---------------------  289 (435)
T ss_pred             -E-EEeecCCCcccCcEECCCCC-EEEEEEecCCCceEEEEECCCCc----eEEccCCC---------------------
Confidence             1 22334555677889999998 23456666666  5566664321    11111110                     


Q ss_pred             CCCceeEEEcCCCCeEEEecC-C--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAG-D--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCKS  232 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~~  232 (279)
                       .......|+|+++.++..+. +  ..|+++|+..++..+ +..+...+....|+|+|++|+..+.+   ..|.+||+..
T Consensus       290 -~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~  367 (435)
T PRK05137        290 -AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG  367 (435)
T ss_pred             -CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence             01356799999998876653 2  368889987665544 33344556678899999998876543   3688889765


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      +. ...+.       .+  ..+..+.|+|||+.|+..+.
T Consensus       368 ~~-~~~lt-------~~--~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        368 SG-ERILT-------SG--FLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             Cc-eEecc-------CC--CCCCCCeECCCCCEEEEEEc
Confidence            44 33332       11  23567899999998876544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=4.9e-15  Score=124.87  Aligned_cols=240  Identities=12%  Similarity=0.091  Sum_probs=155.8

Q ss_pred             CCCceeeeccccccc-----cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643            1 MCGDSTNWDEDAYRK-----SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      -||+||+||......     ....++......+.++.+.+    .++.+|+++.||.|++.+++..+.....        
T Consensus      1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~-------- 1136 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRV-------- 1136 (1431)
T ss_pred             CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEccccccccce--------
Confidence            389999999654321     12223444568899999999    8999999999999999999863211110        


Q ss_pred             eeeeccccccccCC-ccCeEE-EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           76 QLLGIEPDGFLHGH-DGPAYD-VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        76 ~~~~~~~~~~~~~h-~~~v~~-~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                          ....+....+ .+.+.+ -+|....+...++.+..-+.|..||++....... ......                 
T Consensus      1137 ----~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-lk~~~~----------------- 1194 (1431)
T KOG1240|consen 1137 ----ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-LKNQLR----------------- 1194 (1431)
T ss_pred             ----eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-hhcCcc-----------------
Confidence                1111122222 222333 3343333323788888889999999875321111 111111                 


Q ss_pred             ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCC---CcEEEEe-c-CCCeEEE
Q 023643          154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNS---TNQIVTG-S-EDGTARI  227 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~---~~~l~~~-~-~d~~i~v  227 (279)
                           .+.|++++.+|.++++++|+..|.+.+||++-+.++...+ .+..+++.+..+|-   ....+++ + ..+.|.+
T Consensus      1195 -----hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 -----HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             -----ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence                 1238999999999999999999999999999998888775 34578888887773   2454444 4 5788999


Q ss_pred             EeCCCCceEEEecCCccc-cc----c------CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          228 WDCKSGKCIKVIDPVKDK-QL----K------GVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~-~~----~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |++.+|.+..++...... .+    .      .+.......++..-+..+.+|+.|..|+.||
T Consensus      1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            999999877776543110 00    0      1111222233444467899999999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.1e-16  Score=124.29  Aligned_cols=173  Identities=22%  Similarity=0.307  Sum_probs=128.2

Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+.||++.|+++.|+.+|.  +|++||.|-.+.|||.-   ..+....+...|...                    
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~---~~KllhsI~TgHtaN--------------------   95 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPF---EYKLLHSISTGHTAN--------------------   95 (758)
T ss_pred             chhhhhccccceecceeecCCCC--EEeecCCcceEEeecch---hcceeeeeecccccc--------------------
Confidence            34467889999999999999998  99999999999999964   333344444444432                    


Q ss_pred             CceeEEEcC--CCCeEEEecCCCeEEEEecCC----------CcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEE
Q 023643          161 ENNAIAVDP--QGGAIFSAAGDSCAYCWDVES----------SRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARI  227 (279)
Q Consensus       161 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~v  227 (279)
                       |.++.|-|  +.+.+++|..|..|+++|+..          .+..+.+..|...|..++-.|++ +.+.++++||+|+-
T Consensus        96 -IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen   96 -IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             -eeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence             68899988  455889999999999999984          24455667789999999999986 88999999999999


Q ss_pred             EeCCCCceE-EEecCCc-cccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          228 WDCKSGKCI-KVIDPVK-DKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       228 wd~~~~~~~-~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      ||++....- .....+. ...+....-...++..+|. ..+|+.|+.|-..++||
T Consensus       175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence            999863211 1110000 0001122245678899995 56889999999888886

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.9e-16  Score=117.68  Aligned_cols=250  Identities=17%  Similarity=0.266  Sum_probs=172.3

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc-----------ccCCcccceeee------
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL-----------GLSNSKVQQLLG------   79 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~------   79 (279)
                      +...+..|.+.|..+.|..    .|..|++|+.|..|.+||.........+           .+.+...+..+.      
T Consensus       134 l~~kL~~H~GcVntV~FN~----~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQ----RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hhhcccCCCCccceeeecc----cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            3456789999999999999    8999999999999999998765444311           111111111100      


Q ss_pred             ------------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc--cceEEee
Q 023643           80 ------------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV--KPVLDLV  145 (279)
Q Consensus        80 ------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~  145 (279)
                                  .+....+..|.++|..++.-|... ..|.+++.|+.+.-+|++................  ..++.+.
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence                        122334556999999999999877 5899999999999999886533222221111111  0111110


Q ss_pred             c---------------------------CCCCCccccC-------CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC
Q 023643          146 N---------------------------HQHKGPWGAL-------SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS  191 (279)
Q Consensus       146 ~---------------------------~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  191 (279)
                      .                           ....++...+       .....|++++|+.++.-|.++.+|-.|+++.-..+
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence            0                           0011111111       12346899999988888888888999999954322


Q ss_pred             ------------cE-EEEeecCCc--ceEEEEE-cCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          192 ------------RI-KMVFKGHSD--YLHCIVA-RNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       192 ------------~~-~~~~~~~~~--~i~~i~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                                  .. .+.+++|.+  .|.++-| -|...|+++||.-|.|.||+-.+++.++.+.        +-..-|+
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me--------gDr~VVN  440 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME--------GDRHVVN  440 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh--------cccceEe
Confidence                        11 233778864  4667755 4678999999999999999999999988884        4444899


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |+-=+|.-..||+.+-|.-|+||.
T Consensus       441 CLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  441 CLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             ccCCCCCCchhhccCCccceeeec
Confidence            999999999999999999999994

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=8e-15  Score=118.20  Aligned_cols=206  Identities=9%  Similarity=0.094  Sum_probs=128.3

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.++|.++..   .+.+..+...+.+.+|+|    +++.|+..+.+   ..|.+||+.++.                  
T Consensus       177 ~L~~~D~dG~~---~~~l~~~~~~v~~p~wSP----DG~~la~~s~~~~~~~I~~~dl~~g~------------------  231 (427)
T PRK02889        177 QLQISDADGQN---AQSALSSPEPIISPAWSP----DGTKLAYVSFESKKPVVYVHDLATGR------------------  231 (427)
T ss_pred             EEEEECCCCCC---ceEeccCCCCcccceEcC----CCCEEEEEEccCCCcEEEEEECCCCC------------------
Confidence            45666765533   223345667899999999    89988876643   359999998742                  


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                       .. .+....+.+....|+|+++  .|+ +.+.+|...||.++.....  ...+..+.                      
T Consensus       232 -~~-~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~----------------------  283 (427)
T PRK02889        232 -RR-VVANFKGSNSAPAWSPDGR--TLAVALSRDGNSQIYTVNADGSG--LRRLTQSS----------------------  283 (427)
T ss_pred             -EE-EeecCCCCccceEECCCCC--EEEEEEccCCCceEEEEECCCCC--cEECCCCC----------------------
Confidence             11 1222234456889999998  554 6778888788776422111  11111100                      


Q ss_pred             CCceeEEEcCCCCeEEEecC-CCeEEEE--ecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFSAAG-DSCAYCW--DVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~-d~~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~  233 (279)
                      .......|+|||+.|+..+. ++...+|  ++.+++..+. ..........+|+|+|++|+..+.++   .|.+||+.++
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            01356789999998776553 4555555  5455543332 22223344678999999998776554   6999999887


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      +.....        ..  .......|+|||+.|+.++.++
T Consensus       363 ~~~~lt--------~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        363 QVTALT--------DT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CeEEcc--------CC--CCccCceECCCCCEEEEEEecC
Confidence            654322        11  1235679999999888776543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4.6e-15  Score=120.86  Aligned_cols=202  Identities=16%  Similarity=0.200  Sum_probs=152.8

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      ..|...+++.+++|    +++++|+|..||+|.+|.-...+..               ......+..|..+|++++|+++
T Consensus       202 ~~Htf~~t~~~~sp----n~~~~Aa~d~dGrI~vw~d~~~~~~---------------~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  202 VHHTFNITCVALSP----NERYLAAGDSDGRILVWRDFGSSDD---------------SETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             hhhcccceeEEecc----ccceEEEeccCCcEEEEeccccccc---------------cccceEEEecccccceeEEecC
Confidence            45777799999999    9999999999999999975431000               2334567789999999999999


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS  181 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  181 (279)
                      |.  +|+|||..|.+.+|.+.+.. .+....+..                         .|..+.++||+.+.++...|.
T Consensus       263 G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-------------------------~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  263 GA--YLLSGGREGVLVLWQLETGK-KQFLPRLGS-------------------------PILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             Cc--eEeecccceEEEEEeecCCC-cccccccCC-------------------------eeEEEEEcCCCCeEEEEecCc
Confidence            98  99999999999999987653 222222211                         378999999999999999999


Q ss_pred             eEEEEecCCCcEEEEeec-----------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc---
Q 023643          182 CAYCWDVESSRIKMVFKG-----------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL---  247 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---  247 (279)
                      .|.+....+.+...++.+           ..+-.+.++++|..+.++-.+..|.|.+||+.+.+.+..+........   
T Consensus       315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~  394 (792)
T KOG1963|consen  315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD  394 (792)
T ss_pred             eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence            999998866555444432           234467788999778888899999999999998777766543221100   


Q ss_pred             cCcceeeeEEEEcCCCCEEEEEc
Q 023643          248 KGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ..+.-.+++++.+..|.+++|.-
T Consensus       395 ~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  395 VNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ceeEEeeeeehhhccceEEEEee
Confidence            13445788888888899999873

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.5e-14  Score=113.09  Aligned_cols=224  Identities=14%  Similarity=0.165  Sum_probs=154.2

Q ss_pred             cccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCccc----------------------------ccccCCc--
Q 023643           24 LTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKL----------------------------PLGLSNS--   72 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~----------------------------~~~~~~~--   72 (279)
                      ++..-+.+..+|    ||+++ |+|..--.|++||+.......                            .+.+...  
T Consensus        50 ~p~ast~ik~s~----DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   50 MPTASTRIKVSP----DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             CccccceeEecC----CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            667788999999    88875 667788999999998643322                            0000000  


Q ss_pred             -------------------ccceee-------------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643           73 -------------------KVQQLL-------------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR  120 (279)
Q Consensus        73 -------------------~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~  120 (279)
                                         .-+-++             .++.+..+....+.++++..++...  +|++|+.+|.|..||
T Consensus       126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLACGTEDGVVEFWD  203 (703)
T ss_pred             eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEecccCceEEEec
Confidence                               000000             0444455555567899999999887  999999999999999


Q ss_pred             cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-c
Q 023643          121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-G  199 (279)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~  199 (279)
                      .++......+.....     +.       ..  ........|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +
T Consensus       204 pR~ksrv~~l~~~~~-----v~-------s~--pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~  269 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASS-----VN-------SH--PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG  269 (703)
T ss_pred             chhhhhheeeecccc-----cC-------CC--ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence            876422211111000     00       00  000111248999999999999999999999999999988877543 3


Q ss_pred             CCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          200 HSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       200 ~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      ..-+|..+.|.+.  ++.+++ .....++|||-.+|+....+.+         ...+..+|+-|++-.++++-.++.+..
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp---------t~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP---------TSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc---------cCCcCceeeecCCceEEEecCCCccee
Confidence            3467889999775  444554 4567799999999999988853         345889999999999999987766543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=9.6e-16  Score=116.57  Aligned_cols=207  Identities=15%  Similarity=0.089  Sum_probs=151.0

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      .+.|||-++....+++..    .+|..+.|-|    ..-+|++++..|.++--|+.+                   ++.+
T Consensus       192 y~yvYD~~GtElHClk~~----~~v~rLeFLP----yHfLL~~~~~~G~L~Y~DVS~-------------------GklV  244 (545)
T KOG1272|consen  192 YVYVYDNNGTELHCLKRH----IRVARLEFLP----YHFLLVAASEAGFLKYQDVST-------------------GKLV  244 (545)
T ss_pred             eEEEecCCCcEEeehhhc----Cchhhhcccc----hhheeeecccCCceEEEeech-------------------hhhh
Confidence            467888777554444433    5799999999    788999999999999999998                   7778


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      ..+..-.+.+..++-+|-+.  .+-+|...|+|.+|......   ....                      .++|.++|.
T Consensus       245 a~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~ske---PLvK----------------------iLcH~g~V~  297 (545)
T KOG1272|consen  245 ASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKE---PLVK----------------------ILCHRGPVS  297 (545)
T ss_pred             HHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcc---hHHH----------------------HHhcCCCcc
Confidence            88888888899999999887  89999999999999965321   1111                      123334589


Q ss_pred             eEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-CC--ceEEEec
Q 023643          164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-SG--KCIKVID  240 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~--~~~~~~~  240 (279)
                      +|++.++|.+++|.+.|..++|||++....+.++.. .-+...+++|..|  +++.+....|.||.-. .+  .....+-
T Consensus       298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm  374 (545)
T KOG1272|consen  298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYM  374 (545)
T ss_pred             eEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchh
Confidence            999999999999999999999999998887776654 4456777787443  4455566779999522 21  1111111


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      .      ......|..+.|.|-...|-.|-..|
T Consensus       375 ~------H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  375 N------HRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             h------hccCcccccceeccHHHeeeccccCC
Confidence            1      12234889999999776666554443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.63  E-value=1.5e-13  Score=111.18  Aligned_cols=204  Identities=12%  Similarity=0.119  Sum_probs=131.0

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.++|.++..   .+.+..+...+...+|+|    ++++|+.+...   ..|++|++.++.                  
T Consensus       171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Sp----dg~~la~~~~~~~~~~i~v~d~~~g~------------------  225 (417)
T TIGR02800       171 ELQVADYDGAN---PQTITRSREPILSPAWSP----DGQKLAYVSFESGKPEIYVQDLATGQ------------------  225 (417)
T ss_pred             eEEEEcCCCCC---CEEeecCCCceecccCCC----CCCEEEEEEcCCCCcEEEEEECCCCC------------------
Confidence            46667766543   233444556788999999    89999887643   479999998732                  


Q ss_pred             cccccccCCccCeEEEEecCCCCceEE-EEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                       . ..+..+.+.+.+++|+|+++  .| ++.+.++  .|.+|++.+...    ..+.... .                  
T Consensus       226 -~-~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~-~------------------  278 (417)
T TIGR02800       226 -R-EKVASFPGMNGAPAFSPDGS--KLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGP-G------------------  278 (417)
T ss_pred             -E-EEeecCCCCccceEECCCCC--EEEEEECCCCCccEEEEECCCCCE----EECCCCC-C------------------
Confidence             1 11223445566789999997  55 4555554  477788654211    1111100 0                  


Q ss_pred             CCCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCC
Q 023643          158 PVPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCK  231 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~  231 (279)
                         ......|+|+++.|+..+. .+  .|+++|+.+++... +..+........|+|++++|+.++.++   .|.+||+.
T Consensus       279 ---~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       279 ---IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             ---CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence               1245689999998776554 22  68888988766443 433455667889999999998888776   79999998


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      ++... .+..        . .......|+|++++|+..+.++
T Consensus       355 ~~~~~-~l~~--------~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       355 GGGER-VLTD--------T-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCeE-EccC--------C-CCCCCceECCCCCEEEEEEeCC
Confidence            76543 3311        1 1234568999999888776543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=1.5e-14  Score=106.33  Aligned_cols=247  Identities=15%  Similarity=0.158  Sum_probs=149.4

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      .+-|.++.|..    .|.+||+|..+|.|.++.-...... .+.+.............+..+. -...|+.+.|.++++.
T Consensus        25 adiis~vef~~----~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSle-ieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   25 ADIISAVEFDH----YGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLE-IEEKINKIRWLDDGNL   98 (433)
T ss_pred             hcceeeEEeec----ccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhh-hhhhhhhceecCCCCc
Confidence            45688999999    8999999999999999986653210 1110000000000011111111 2356899999998876


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeec---CC-------CCCccccCCCCCCceeEEEcCCCCe
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVN---HQ-------HKGPWGALSPVPENNAIAVDPQGGA  173 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~i~~~~~~~~~~~  173 (279)
                      ..++....|.+|++|.++............ ......+..+..   ..       ..+..-.-.|..-|++++++.|...
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            788888999999999987533222100000 000011111100   00       0111112234446899999999988


Q ss_pred             EEEecCCCeEEEEecCCCcE---EEEeecC-----CcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceE----EEec
Q 023643          174 IFSAAGDSCAYCWDVESSRI---KMVFKGH-----SDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCI----KVID  240 (279)
Q Consensus       174 l~~~~~d~~i~i~d~~~~~~---~~~~~~~-----~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~----~~~~  240 (279)
                      ++++. |-.|.+|++.--..   +-.++.+     ..-|++..|+|. .+.++-.+..|+|++-|+|...+-    ..+.
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            88765 78899999864321   2222333     245788899994 788999999999999999853211    1111


Q ss_pred             ----CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 ----PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                          +.....+..--..|..+.|+++|+||++-.. -+|++||
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD  299 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD  299 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence                1111223334467899999999999998754 6789997

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=5.2e-14  Score=113.82  Aligned_cols=201  Identities=14%  Similarity=0.188  Sum_probs=130.9

Q ss_pred             CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc--Cc
Q 023643           51 GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE--SK  128 (279)
Q Consensus        51 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~--~~  128 (279)
                      +.+.+|++...                  ..+...+. -..+|.+++|+|... ++++.|..+|.|.+||++....  ..
T Consensus       222 ~~~~vW~~~~p------------------~~Pe~~~~-~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s  281 (555)
T KOG1587|consen  222 GVLLVWSLKNP------------------NTPELVLE-SPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPS  281 (555)
T ss_pred             ceEEEEecCCC------------------CCceEEEe-cCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCc
Confidence            46888988864                  23334443 456799999999877 6889999999999999986543  12


Q ss_pred             ceeeeccCcccceEEee--------------cCCCCCcccc---------------------CCCCCCceeEEEcCC-CC
Q 023643          129 VPINLQGNHVKPVLDLV--------------NHQHKGPWGA---------------------LSPVPENNAIAVDPQ-GG  172 (279)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~---------------------~~~~~~i~~~~~~~~-~~  172 (279)
                      ........+..++..+.              ..+.-..|..                     ......+++++|.+. ..
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence            22222222333333221              1111111111                     012245778888774 34


Q ss_pred             eEEEecCCCeEEEEecCC---C-----cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-CCceEEEecCCc
Q 023643          173 AIFSAAGDSCAYCWDVES---S-----RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-SGKCIKVIDPVK  243 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~---~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~  243 (279)
                      .+++|+.+|.|.--+-..   +     +....+..|.++|+++.++|=+..++..+.|-+++||... ...++..+    
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~----  437 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL----  437 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----
Confidence            677888888877633221   1     1233455688999999999965444444449999999987 56666666    


Q ss_pred             cccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          244 DKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                          ..+...|++++|||-. ..++++..||.+.+||
T Consensus       438 ----~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  438 ----DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             ----hhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence                4566679999999965 5677888899999998

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=7.3e-14  Score=100.61  Aligned_cols=199  Identities=19%  Similarity=0.177  Sum_probs=135.6

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      ..++.|++    .+..++++-.+|.+.+-+.....                 .+..+.++.|+-++....|+...+ +++
T Consensus       124 ~lslD~~~----~~~~i~vs~s~G~~~~v~~t~~~-----------------le~vq~wk~He~E~Wta~f~~~~p-nlv  181 (339)
T KOG0280|consen  124 ALSLDIST----SGTKIFVSDSRGSISGVYETEMV-----------------LEKVQTWKVHEFEAWTAKFSDKEP-NLV  181 (339)
T ss_pred             eeEEEeec----cCceEEEEcCCCcEEEEecceee-----------------eeecccccccceeeeeeecccCCC-ceE
Confidence            45678888    78889999999999854444321                 455568899999999999987766 699


Q ss_pred             EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEE
Q 023643          108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~  186 (279)
                      .+||.|+.+..||++-. . ..+..-...|..                     .|.+|.-+| .+.++++|+.|..|++|
T Consensus       182 ytGgDD~~l~~~D~R~p-~-~~i~~n~kvH~~---------------------GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIP-K-TFIWHNSKVHTS---------------------GVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             EecCCCceEEEEEecCC-c-ceeeecceeeec---------------------ceEEEecCCCCCceEEEeccccceeee
Confidence            99999999999998721 1 222221111111                     367777775 56699999999999999


Q ss_pred             ecCC-CcEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcC
Q 023643          187 DVES-SRIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       187 d~~~-~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      |.++ ++++..-. -.+.|+.+.++|.  +..|+++..+| .+|-+...+...  ..+..     .+.|.+-+..-.|..
T Consensus       239 DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s-----~~~hdSl~YG~DWd~  311 (339)
T KOG0280|consen  239 DTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPS-----DKIHDSLCYGGDWDS  311 (339)
T ss_pred             ehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeec-----cccccceeecccccc
Confidence            9994 67776544 3488999999994  44566665555 677776554322  11211     156666666666755


Q ss_pred             CCCEEEEEc-CcceEE-eC
Q 023643          262 SESWLVRVR-ATNYVI-LF  278 (279)
Q Consensus       262 ~~~~l~~~~-~d~~i~-~w  278 (279)
                      ....|||++ .|+.++ +|
T Consensus       312 ~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  312 KDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             ccceeeeeeccccceeeee
Confidence            456688865 466644 55

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.8e-13  Score=107.41  Aligned_cols=194  Identities=10%  Similarity=0.087  Sum_probs=121.2

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEe-cCCC--cEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIA-SSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .+.+|++++++...+..+.   +.+..++|+|    |++.|+.. +.+|  .|.+||+.++                   
T Consensus       224 ~i~i~dl~~G~~~~l~~~~---~~~~~~~~SP----DG~~La~~~~~~g~~~I~~~d~~tg-------------------  277 (429)
T PRK03629        224 ALVIQTLANGAVRQVASFP---RHNGAPAFSP----DGSKLAFALSKTGSLNLYVMDLASG-------------------  277 (429)
T ss_pred             EEEEEECCCCCeEEccCCC---CCcCCeEECC----CCCEEEEEEcCCCCcEEEEEECCCC-------------------
Confidence            5677777765443343343   3345689999    89888754 4455  4888898763                   


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      +.. .+..+...+....|+|+++  .|+..+. ++...+|.++............+.                       
T Consensus       278 ~~~-~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~-----------------------  331 (429)
T PRK03629        278 QIR-QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRITWEGS-----------------------  331 (429)
T ss_pred             CEE-EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEeecCCC-----------------------
Confidence            222 2222334577899999998  7766554 455566654321111111111110                       


Q ss_pred             CCceeEEEcCCCCeEEEecCC---CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe---EEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFSAAGD---SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT---ARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~---i~vwd~~~~  233 (279)
                       ......|+|+|++++..+.+   ..|.+||+.+++... +.. ........|+|||++|+.++.++.   +.++++ +|
T Consensus       332 -~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G  407 (429)
T PRK03629        332 -QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG  407 (429)
T ss_pred             -CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence             13567899999988775543   458899998876543 332 122346789999999998887765   677776 46


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcC
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      +....+        ..|...+...+|+|
T Consensus       408 ~~~~~l--------~~~~~~~~~p~Wsp  427 (429)
T PRK03629        408 RFKARL--------PATDGQVKFPAWSP  427 (429)
T ss_pred             CCeEEC--------ccCCCCcCCcccCC
Confidence            666666        45666788888887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=4.2e-13  Score=108.29  Aligned_cols=197  Identities=12%  Similarity=0.103  Sum_probs=121.6

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      .|.+||+++++...+..   ..+.+...+|+|    |++.|+ +.+.+|...||.++..                  ...
T Consensus       221 ~I~~~dl~~g~~~~l~~---~~g~~~~~~~SP----DG~~la~~~~~~g~~~Iy~~d~~------------------~~~  275 (427)
T PRK02889        221 VVYVHDLATGRRRVVAN---FKGSNSAPAWSP----DGRTLAVALSRDGNSQIYTVNAD------------------GSG  275 (427)
T ss_pred             EEEEEECCCCCEEEeec---CCCCccceEECC----CCCEEEEEEccCCCceEEEEECC------------------CCC
Confidence            47888887765333322   234566889999    888776 5677888777766432                  122


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ...+..+.+......|+|+++  .|+..+ .+|...+|.++............+.                        .
T Consensus       276 ~~~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~------------------------~  329 (427)
T PRK02889        276 LRRLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS------------------------Y  329 (427)
T ss_pred             cEECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceEEEecCCC------------------------C
Confidence            233334444556788999998  666544 4577778876422111111111110                        1


Q ss_pred             ceeEEEcCCCCeEEEecCCC---eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCCCce
Q 023643          162 NNAIAVDPQGGAIFSAAGDS---CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKSGKC  235 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~~~  235 (279)
                      .....|+|+|++++..+.++   .|.+||+.+++......  ........|+|+|+.|+..+.++   .+.+.++ +++.
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~  406 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRI  406 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence            23568999999988766543   69999998877554332  22346789999999988776544   3566666 4555


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ...+        ..+...+...+|+|-
T Consensus       407 ~~~l--------~~~~g~~~~p~wsp~  425 (427)
T PRK02889        407 KQRL--------SVQGGDVREPSWGPF  425 (427)
T ss_pred             eEEe--------ecCCCCCCCCccCCC
Confidence            5555        334445667778763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=1.2e-12  Score=95.99  Aligned_cols=255  Identities=10%  Similarity=0.053  Sum_probs=156.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCccc---------ccccCC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKL---------PLGLSN   71 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~   71 (279)
                      |+.|.+|++...+.  .........++.+++|+|    +| ..|.+...+-.|.+|.+.+.....         .+.+.+
T Consensus        70 ~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSP----dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~  143 (447)
T KOG4497|consen   70 DPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSP----DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP  143 (447)
T ss_pred             cceEEEEEeeccee--EEEeccCCCcceeeeECC----CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC
Confidence            57888998766543  334444568899999999    78 566677788999999998754322         111111


Q ss_pred             c---------------------------------------------ccceeeecccc--ccccCCc-cCeEEEEecCCCC
Q 023643           72 S---------------------------------------------KVQQLLGIEPD--GFLHGHD-GPAYDVKFYGGNE  103 (279)
Q Consensus        72 ~---------------------------------------------~~~~~~~~~~~--~~~~~h~-~~v~~~~~~~~~~  103 (279)
                      +                                             +..-.+-..++  ..+.-|. -.+..+.|+|.++
T Consensus       144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q  223 (447)
T KOG4497|consen  144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ  223 (447)
T ss_pred             CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc
Confidence            1                                             11000000000  0001122 3577889999887


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeee--------------------ccCcc------------c----ceEEe---
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINL--------------------QGNHV------------K----PVLDL---  144 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------------~~~~~------------~----~~~~~---  144 (279)
                        +|+.|+.|+.+|+.+--+.+.......+                    ..++.            .    ..++.   
T Consensus       224 --flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~  301 (447)
T KOG4497|consen  224 --FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMT  301 (447)
T ss_pred             --eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhc
Confidence              9999999999998664221100000000                    00000            0    00000   


Q ss_pred             --ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643          145 --VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       145 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  220 (279)
                        ..+.-+.+-+...+...+.-++|++|..++++-...  ..+-+||++..+.-..+. ...+|+...|+|....|+.+.
T Consensus       302 pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct  380 (447)
T KOG4497|consen  302 PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT  380 (447)
T ss_pred             ceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc
Confidence              011111222233344567889999999888876543  568999998766555443 567899999999888888888


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      ....+++|...-...+..         ......|..+.|.-+|..++..+.|..
T Consensus       381 g~srLY~W~psg~~~V~v---------P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  381 GKSRLYFWAPSGPRVVGV---------PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             CCceEEEEcCCCceEEec---------CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            788899998654333322         233368999999999999998888864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=3.2e-12  Score=100.34  Aligned_cols=242  Identities=11%  Similarity=0.125  Sum_probs=139.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|.+.|.++.  +.+..+......-..+.|+|    |++++.+.+.||.|.++|+.+                   .+
T Consensus        15 ~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~-------------------~~   69 (369)
T PF02239_consen   15 SGSVAVIDGATN--KVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLAT-------------------GK   69 (369)
T ss_dssp             GTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTS-------------------SS
T ss_pred             CCEEEEEECCCC--eEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCc-------------------cc
Confidence            578888887765  34666664444445578999    999999999999999999998                   55


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceee--------------eccCcccc--eEEe
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPIN--------------LQGNHVKP--VLDL  144 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~--------------~~~~~~~~--~~~~  144 (279)
                      .+..++.-. ...+++++++++  +++++ ...+.+.++|.++.+..+.+..              ....+..+  +..+
T Consensus        70 ~v~~i~~G~-~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   70 VVATIKVGG-NPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             EEEEEE-SS-EEEEEEE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             EEEEEecCC-CcceEEEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            566665433 367899999998  66655 5789999999876432221110              00001111  1111


Q ss_pred             ecCCCC--------Ccc--ccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEe----------------
Q 023643          145 VNHQHK--------GPW--GALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVF----------------  197 (279)
Q Consensus       145 ~~~~~~--------~~~--~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~----------------  197 (279)
                      .....-        .+.  .............|+|++++++++ ..+..|-++|..+++.+..+                
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph  226 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH  226 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred             ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence            110000        000  001112234568899999987664 45667888888766544332                


Q ss_pred             ---------------------------------------ecCCcceEEEEEcCCCcEEEEe----cCCCeEEEEeCCCCc
Q 023643          198 ---------------------------------------KGHSDYLHCIVARNSTNQIVTG----SEDGTARIWDCKSGK  234 (279)
Q Consensus       198 ---------------------------------------~~~~~~i~~i~~~~~~~~l~~~----~~d~~i~vwd~~~~~  234 (279)
                                                             .....+ ..+..+|+++++.+.    ...++|.++|.++.+
T Consensus       227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~  305 (369)
T PF02239_consen  227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK  305 (369)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred             CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence                                                   111112 446778999998887    556889999999998


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC--cceEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA--TNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd  279 (279)
                      ....+..       +....+..+.|+++|+.+..+..  ++.|.+||
T Consensus       306 ~~~~i~~-------~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  306 VVKTITP-------GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             EEE-HHH-------HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             eeEEEec-------cCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            8777742       22234888999999997665543  34688876

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=4.1e-13  Score=111.71  Aligned_cols=183  Identities=19%  Similarity=0.190  Sum_probs=137.3

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc----CeEEEEecCCCCceEEEEeeCCCc
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG----PAYDVKFYGGNEDALLLSCGDDGR  115 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~~dg~  115 (279)
                      +...++.++.+..+-+||....                   .....+...+.    ...-+-++++.-  ++++|+--+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~-------------------~~~~~i~~~er~~l~~~~~~g~s~~~~--~i~~gsv~~~  156 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNS-------------------SVLSKIQSDERCTLYSSLIIGDSAEEL--YIASGSVFGE  156 (967)
T ss_pred             hcceEEEEEcCceEEEEecccC-------------------ceehhcCCCceEEEEeEEEEeccCcEE--EEEecccccc
Confidence            4567888888889999998762                   22222221111    122233445544  8999999999


Q ss_pred             EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE
Q 023643          116 ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM  195 (279)
Q Consensus       116 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  195 (279)
                      |.+|++...   +....+.+                      |++.|.++.++-+|.++++.+.|.++++|++.+.+...
T Consensus       157 iivW~~~~d---n~p~~l~G----------------------HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~  211 (967)
T KOG0974|consen  157 IIVWKPHED---NKPIRLKG----------------------HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG  211 (967)
T ss_pred             EEEEecccc---CCcceecc----------------------cCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence            999997521   11112222                      23347899999999999999999999999999988776


Q ss_pred             -EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcc
Q 023643          196 -VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       196 -~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                       ..-+|...+..++|.|.  .+++++.|-+.++|+. .++.+.++        .+|. ..++.++..++...++|++.|+
T Consensus       212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y--------~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVY--------DEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhh--------hhhhhcceeEEEEcCCceEEEeeccCc
Confidence             66679999999999987  9999999999999975 45555566        3443 4689999999999999999999


Q ss_pred             eEEeCC
Q 023643          274 YVILFS  279 (279)
Q Consensus       274 ~i~~wd  279 (279)
                      .+++||
T Consensus       281 ~lk~~~  286 (967)
T KOG0974|consen  281 TLKLWD  286 (967)
T ss_pred             chhhhh
Confidence            999996

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.2e-12  Score=103.10  Aligned_cols=201  Identities=13%  Similarity=0.091  Sum_probs=123.4

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |.++|.++..   .+.+..+...+...+|+|    +++.|+..+.+   ..|.+|++.++.                 .+
T Consensus       181 l~~~d~~g~~---~~~l~~~~~~~~~p~wSp----DG~~la~~s~~~~~~~l~~~~l~~g~-----------------~~  236 (430)
T PRK00178        181 LQRSDYDGAR---AVTLLQSREPILSPRWSP----DGKRIAYVSFEQKRPRIFVQNLDTGR-----------------RE  236 (430)
T ss_pred             EEEECCCCCC---ceEEecCCCceeeeeECC----CCCEEEEEEcCCCCCEEEEEECCCCC-----------------EE
Confidence            5566766643   233444567889999999    89988776533   368889998742                 11


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEE-EeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      .+...   .+.+....|+|+++  .|+ +.+.+|  .|.++|+++...    ..+.....                    
T Consensus       237 ~l~~~---~g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~--------------------  287 (430)
T PRK00178        237 QITNF---EGLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMDLASRQL----SRVTNHPA--------------------  287 (430)
T ss_pred             EccCC---CCCcCCeEECCCCC--EEEEEEccCCCceEEEEECCCCCe----EEcccCCC--------------------
Confidence            12222   23345689999998  555 555555  577778754311    11111000                    


Q ss_pred             CCCceeEEEcCCCCeEEEecC-C--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-C--eEEEEeCCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAG-D--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-G--TARIWDCKS  232 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i~vwd~~~  232 (279)
                        ......|+|+++.++..+. +  ..|+++|+.+++..+... .........|+|+|++|+..+.+ +  .|.++|+.+
T Consensus       288 --~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        288 --IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             --CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence              1346789999997765543 3  368888888776544321 22233456899999998776543 3  588899988


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ++.. .+..       .  .......|+|||+.|+..+.
T Consensus       365 g~~~-~lt~-------~--~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        365 GSVR-ILTD-------T--SLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             CCEE-EccC-------C--CCCCCceECCCCCEEEEEEe
Confidence            7653 3321       1  11124589999998876654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=2.2e-13  Score=100.33  Aligned_cols=232  Identities=14%  Similarity=0.189  Sum_probs=151.3

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-ccccCCcc---------------cceeeecccccccc-
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-PLGLSNSK---------------VQQLLGIEPDGFLH-   87 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~-   87 (279)
                      ...|..+.|.+.  .+...++..+.|.+|++|.+....... .+......               .+..+...+.+.+. 
T Consensus        84 eEKinkIrw~~~--~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   84 EEKINKIRWLDD--GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhceecCC--CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            357889999883  244567788899999999997654333 11110000               01111144445553 


Q ss_pred             CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643           88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV  167 (279)
Q Consensus        88 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  167 (279)
                      .|.--|++++++.+..  .++++. |=.|.+|+++-....-.+...+......+..+                 |++..|
T Consensus       162 aHtyhiNSIS~NsD~E--t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteV-----------------ITsaEF  221 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKE--TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEV-----------------ITSAEF  221 (433)
T ss_pred             cceeEeeeeeecCccc--eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHH-----------------Hhhhcc
Confidence            4888899999999987  777764 78899999875444444444444433332221                 788899


Q ss_pred             cCCC-CeEEEecCCCeEEEEecCCCcEE----EEee------------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          168 DPQG-GAIFSAAGDSCAYCWDVESSRIK----MVFK------------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       168 ~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      +|.. +.++-.+..|+|++.|++...+.    ..|.            .--..|..+.|+++|+|+++-.. -+|++||+
T Consensus       222 hp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~  300 (433)
T KOG1354|consen  222 HPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDL  300 (433)
T ss_pred             CHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEec
Confidence            9954 46666777899999999853211    1111            11246788999999999998643 57999999


Q ss_pred             -CCCceEEEecCCcccc-----c--cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          231 -KSGKCIKVIDPVKDKQ-----L--KGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       231 -~~~~~~~~~~~~~~~~-----~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       ...+++.+++.+....     +  ...-..-..++|+.++.+++||+..+.+++|+
T Consensus       301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence             5677777776553110     0  00111235678999999999999999999875

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3.4e-12  Score=103.49  Aligned_cols=158  Identities=11%  Similarity=0.047  Sum_probs=104.7

Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ...+..|...+...+|+|+++  .|+..+.   +..|.+||+...... ......+                        
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g------------------------  246 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRE-LVGNFPG------------------------  246 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEE-EeecCCC------------------------
Confidence            345556788899999999998  7776653   468999998643211 1100111                        


Q ss_pred             CCceeEEEcCCCCeEE-EecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIF-SAAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~  233 (279)
                       .+...+|+|+|+.|+ +.+.++  .|++||+.+++.. .+..+........|+|+|+.|+..+. +|  .|+++|+..+
T Consensus       247 -~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        247 -MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             -cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence             145779999999775 445444  4888899877654 45556666778899999998887663 33  6888898766


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc---ceEEeC
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT---NYVILF  278 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~w  278 (279)
                      +.....         .+...+....|+|+|++|+..+.+   ..|.+|
T Consensus       325 ~~~~lt---------~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        325 NPRRIS---------FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             CeEEee---------cCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence            544332         223345667899999999876543   245554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.53  E-value=2.9e-12  Score=100.64  Aligned_cols=188  Identities=14%  Similarity=0.186  Sum_probs=137.4

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec------C-------------
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY------G-------------  100 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~-------------  100 (279)
                      ...++|....||.+++|+.........+             .+...+   ++...+..|.      |             
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~-------------~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s   67 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEF-------------APIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKAS   67 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeee-------------ccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhcc
Confidence            5789999999999999999875332211             111111   2223333331      1             


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      .+. ..++-|...|.|.++++..+   +....+. +.+..                     .|+++.++.+-..|++++.
T Consensus        68 ~~t-~~lvlgt~~g~v~~ys~~~g---~it~~~st~~h~~---------------------~v~~~~~~~~~~ciyS~~a  122 (541)
T KOG4547|consen   68 LDT-SMLVLGTPQGSVLLYSVAGG---EITAKLSTDKHYG---------------------NVNEILDAQRLGCIYSVGA  122 (541)
T ss_pred             CCc-eEEEeecCCccEEEEEecCC---eEEEEEecCCCCC---------------------cceeeecccccCceEecCC
Confidence            111 36788888899999996432   2222222 22222                     3788888888889999999


Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      |+.+..|+....+.++.++.....+.+++.+||+..+++++  +.|++||+.+.+.+..+        .+|.++|.++.|
T Consensus       123 d~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f--------tgh~s~v~t~~f  192 (541)
T KOG4547|consen  123 DLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF--------TGHGSPVRTLSF  192 (541)
T ss_pred             ceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe--------cCCCcceEEEEE
Confidence            99999999999999999999889999999999999999875  78999999999999999        799999999999


Q ss_pred             cCC-----CCEEEEE-cCcceEEeC
Q 023643          260 DAS-----ESWLVRV-RATNYVILF  278 (279)
Q Consensus       260 ~~~-----~~~l~~~-~~d~~i~~w  278 (279)
                      --+     |.+++++ ..+..+.+|
T Consensus       193 ~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  193 TTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             EEeccccccceeeeccccccceeEE
Confidence            776     6666654 334444444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=5.9e-13  Score=110.75  Aligned_cols=145  Identities=21%  Similarity=0.229  Sum_probs=117.9

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      +.-++++|+.-+.|.+|+...                   .+.-..+.+|++.+.++.|+.++.  +++++|.|.++|+|
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~-------------------dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW  202 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHE-------------------DNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLW  202 (967)
T ss_pred             cEEEEEeccccccEEEEeccc-------------------cCCcceecccCCceEEEEEccCCc--EEEEEecCcceeee
Confidence            678999999999999999984                   122225789999999999999998  99999999999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      ++++.+...  ...                      +.|..++..+.|.|.  .+++++.|.+.++|+.. ++.+..++.
T Consensus       203 ~i~s~~~~~--~~~----------------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~  255 (967)
T KOG0974|consen  203 PIDSREVLG--CTG----------------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDE  255 (967)
T ss_pred             ecccccccC--ccc----------------------ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhh
Confidence            997643222  111                      222234678899987  89999999999999764 666668888


Q ss_pred             CC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          200 HS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       200 ~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      |. ..+..++..+....+++++.|+.+++||+..
T Consensus       256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            76 4689999999999999999999999999754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.51  E-value=3.1e-12  Score=100.46  Aligned_cols=183  Identities=17%  Similarity=0.262  Sum_probs=132.0

Q ss_pred             CCceeeeccccccccce-eeeeecccceEEEEEC------C----------CCCCCCCEEEEecCCCcEEEEeCCCCCcc
Q 023643            2 CGDSTNWDEDAYRKSIL-KEREILTRTVFRTVWG------P----------SKDGSPDTIVIASSDGSITSYSIPSCISK   64 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~-~~~~~~~~~v~~~~~~------~----------~~~~~~~~l~~~~~dg~i~iw~~~~~~~~   64 (279)
                      ||.+|+|+....+...- .....-.+..++..|.      |          ..+.+...++-|...|.|.+|++..    
T Consensus        14 ~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~----   89 (541)
T KOG4547|consen   14 DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG----   89 (541)
T ss_pred             CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC----
Confidence            89999999776542111 1111112344444442      2          1123556788899999999999997    


Q ss_pred             cccccCCcccceeeecccccccc--CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceE
Q 023643           65 LPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVL  142 (279)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  142 (279)
                                     ++....+.  .|.++|.++.++.+-.  .|.|++.|+.+..|+...   ...+........    
T Consensus        90 ---------------g~it~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~~----  145 (541)
T KOG4547|consen   90 ---------------GEITAKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKE---KVIIRIWKEQKP----  145 (541)
T ss_pred             ---------------CeEEEEEecCCCCCcceeeecccccC--ceEecCCceeEEEEeccc---ceeeeeeccCCC----
Confidence                           44444444  5999999999998877  999999999999999653   233333333221    


Q ss_pred             EeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC-----CcEEE
Q 023643          143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS-----TNQIV  217 (279)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~  217 (279)
                                        .+.+++.+||+..+++++  +.|++||+.+++.+..|.+|.++|+++.|-..     |.+++
T Consensus       146 ------------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  146 ------------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             ------------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceee
Confidence                              257899999999999887  78999999999999999999999999999776     66666


Q ss_pred             Ee-cCCCeEEEEeCCC
Q 023643          218 TG-SEDGTARIWDCKS  232 (279)
Q Consensus       218 ~~-~~d~~i~vwd~~~  232 (279)
                      ++ ..+..+.+|-++.
T Consensus       206 ssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  206 SSAAAERGITVWVVEK  221 (541)
T ss_pred             eccccccceeEEEEEc
Confidence            54 4566678886654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.51  E-value=2.2e-12  Score=94.68  Aligned_cols=221  Identities=11%  Similarity=0.074  Sum_probs=143.8

Q ss_pred             cceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           26 RTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      +.|..+.|..    +..+++ ....++.|.+|++..                   .+-...+..-..++.+++|+|++. 
T Consensus        49 dki~yieW~a----ds~~ilC~~yk~~~vqvwsl~Q-------------------pew~ckIdeg~agls~~~WSPdgr-  104 (447)
T KOG4497|consen   49 DKIVYIEWKA----DSCHILCVAYKDPKVQVWSLVQ-------------------PEWYCKIDEGQAGLSSISWSPDGR-  104 (447)
T ss_pred             HHhhheeeec----cceeeeeeeeccceEEEEEeec-------------------ceeEEEeccCCCcceeeeECCCcc-
Confidence            5678889988    555554 457888999999987                   344455666678899999999997 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcc------eeeeccCcccceEEeecCCC---------------------------CC
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKV------PINLQGNHVKPVLDLVNHQH---------------------------KG  151 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---------------------------~~  151 (279)
                      +.|.+...|-.|.+|.+.+....-.      ...+.-+.......+.....                           .-
T Consensus       105 hiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgi  184 (447)
T KOG4497|consen  105 HILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGI  184 (447)
T ss_pred             eEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCc
Confidence            5888899999999999976421100      00000011111111100000                           00


Q ss_pred             cc----------c--------cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----------------
Q 023643          152 PW----------G--------ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-----------------  196 (279)
Q Consensus       152 ~~----------~--------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------  196 (279)
                      .|          +        .....-.+..++|+|.+++|++|+.|+.+++.+--+.++..+                 
T Consensus       185 eWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k  264 (447)
T KOG4497|consen  185 EWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK  264 (447)
T ss_pred             eECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence            00          0        011123567889999999999999999998865432221111                 


Q ss_pred             -------------------------------------------ee------cCCcceEEEEEcCCCcEEEEecC--CCeE
Q 023643          197 -------------------------------------------FK------GHSDYLHCIVARNSTNQIVTGSE--DGTA  225 (279)
Q Consensus       197 -------------------------------------------~~------~~~~~i~~i~~~~~~~~l~~~~~--d~~i  225 (279)
                                                                 ++      .....+.-++|++|..++++-..  -+.+
T Consensus       265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal  344 (447)
T KOG4497|consen  265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL  344 (447)
T ss_pred             hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence                                                       01      11123556899999999998754  4568


Q ss_pred             EEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       226 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      -+||++..+.-..+         ....+|....|+|....|+.+.....+++|.
T Consensus       345 W~Wdlq~l~l~avL---------iQk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  345 WLWDLQNLKLHAVL---------IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             EEEechhhhhhhhh---------hhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            99999887765555         3445799999999988888887777788883

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.7e-11  Score=98.66  Aligned_cols=206  Identities=13%  Similarity=0.041  Sum_probs=117.3

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE---EEecCCC--cEEEEeCCCCCcccccccCCcccceee
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI---VIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .|.+.|.++.....   +......+..-+|+|    ||+.+   ++...+|  .|.+.++.+++                
T Consensus       166 ~l~~~d~dG~~~~~---lt~~~~~~~sP~wSP----DG~~~~~~y~S~~~g~~~I~~~~l~~g~----------------  222 (428)
T PRK01029        166 ELWSVDYDGQNLRP---LTQEHSLSITPTWMH----IGSGFPYLYVSYKLGVPKIFLGSLENPA----------------  222 (428)
T ss_pred             eEEEEcCCCCCceE---cccCCCCcccceEcc----CCCceEEEEEEccCCCceEEEEECCCCC----------------
Confidence            45556666654322   222345667889999    88742   2444444  46777777632                


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEee-CCC----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDG----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                       .+.+..+   .+.....+|+|+|+  .|+..+ .+|    .+.+|++................                
T Consensus       223 -~~~lt~~---~g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~----------------  280 (428)
T PRK01029        223 -GKKILAL---QGNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF----------------  280 (428)
T ss_pred             -ceEeecC---CCCccceEECCCCC--EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC----------------
Confidence             1222223   33345689999998  665443 233    23335554321111100010000                


Q ss_pred             ccCCCCCCceeEEEcCCCCeEEEec-CCCe--EEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEE
Q 023643          154 GALSPVPENNAIAVDPQGGAIFSAA-GDSC--AYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTAR  226 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~  226 (279)
                            ......+|+|||+.|+..+ .+|.  |.++++.. +.....+..+...+....|+|+|+.|+..+.+   ..|.
T Consensus       281 ------~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~  354 (428)
T PRK01029        281 ------GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC  354 (428)
T ss_pred             ------CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence                  0135679999999776654 4554  45555542 23344454445566788999999988876543   4699


Q ss_pred             EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      +||+.+++.....         .....+....|+|||+.|+..
T Consensus       355 v~dl~~g~~~~Lt---------~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        355 VYDLATGRDYQLT---------TSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             EEECCCCCeEEcc---------CCCCCccceEECCCCCEEEEE
Confidence            9999888765432         112345678999999988754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.8e-12  Score=102.52  Aligned_cols=192  Identities=13%  Similarity=0.101  Sum_probs=117.3

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCC--cEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.+||+++.+...+..   ..+...+++|+|    +++.|+ +.+.+|  .|.+||+.++                   
T Consensus       229 ~l~~~dl~~g~~~~l~~---~~g~~~~~~~Sp----DG~~l~~~~s~~g~~~Iy~~d~~~g-------------------  282 (433)
T PRK04922        229 AIYVQDLATGQRELVAS---FRGINGAPSFSP----DGRRLALTLSRDGNPEIYVMDLGSR-------------------  282 (433)
T ss_pred             EEEEEECCCCCEEEecc---CCCCccCceECC----CCCEEEEEEeCCCCceEEEEECCCC-------------------
Confidence            57788887665333322   234455789999    888775 445555  5889998863                   


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEE--eecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICG--WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      + ...+..+.......+|+|+++  .|+..+ .+|...+  +++....  .......+.                     
T Consensus       283 ~-~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~---------------------  336 (433)
T PRK04922        283 Q-LTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGS--AERLTFQGN---------------------  336 (433)
T ss_pred             C-eEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCC--eEEeecCCC---------------------
Confidence            2 122333444456789999998  676655 4555444  4443211  111111110                     


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCC---eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCC
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDS---CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCK  231 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~  231 (279)
                         .....+|+|++++++..+.++   .|.+||+.+++.. .+. +........|+|+|++|+..+.+   +.|.++++.
T Consensus       337 ---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 ---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             ---CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence               124679999999887765432   6999999887765 333 22234567899999988776653   458888874


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                       +.....+        ..+...+...+|+|
T Consensus       412 -g~~~~~l--------~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 -GRVRQRL--------VSADGEVREPAWSP  432 (433)
T ss_pred             -CCceEEc--------ccCCCCCCCCccCC
Confidence             4445555        23334566677776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.2e-11  Score=100.25  Aligned_cols=201  Identities=11%  Similarity=0.099  Sum_probs=117.8

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CC--cEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DG--SITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +.++|.++...   +.+..+...+....|+|    |++.|+..+. ++  .|.+||+.++.                 .+
T Consensus       200 l~i~d~dG~~~---~~l~~~~~~~~~p~wSP----DG~~La~~s~~~g~~~L~~~dl~tg~-----------------~~  255 (448)
T PRK04792        200 LMIADYDGYNE---QMLLRSPEPLMSPAWSP----DGRKLAYVSFENRKAEIFVQDIYTQV-----------------RE  255 (448)
T ss_pred             EEEEeCCCCCc---eEeecCCCcccCceECC----CCCEEEEEEecCCCcEEEEEECCCCC-----------------eE
Confidence            44456555432   22333456788999999    8998887653 33  58888887632                 11


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEE-EeeCCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      .+..+.+   ......|+|+++  .|+ +.+.+|.  |.++|+....    ...+..+.                     
T Consensus       256 ~lt~~~g---~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~---------------------  305 (448)
T PRK04792        256 KVTSFPG---INGAPRFSPDGK--KLALVLSKDGQPEIYVVDIATKA----LTRITRHR---------------------  305 (448)
T ss_pred             EecCCCC---CcCCeeECCCCC--EEEEEEeCCCCeEEEEEECCCCC----eEECccCC---------------------
Confidence            2222222   234679999998  554 5666776  5566654321    11111100                     


Q ss_pred             CCCceeEEEcCCCCeEEEecC-C--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAG-D--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKS  232 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~  232 (279)
                       .......|+|+++.++..+. +  ..|+++|+.+++..+.. .........+|+|+|++|+..+. ++  .|.++|+.+
T Consensus       306 -~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~  383 (448)
T PRK04792        306 -AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET  383 (448)
T ss_pred             -CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence             01356789999997766543 3  35777888777654432 12222345689999998877654 33  466678877


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ++.. .+..       ..  ......|+|||+.|+..+.
T Consensus       384 g~~~-~lt~-------~~--~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        384 GAMQ-VLTS-------TR--LDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CCeE-EccC-------CC--CCCCceECCCCCEEEEEEe
Confidence            7653 3321       11  1123479999998876544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.48  E-value=2.5e-11  Score=87.80  Aligned_cols=164  Identities=18%  Similarity=0.178  Sum_probs=116.7

Q ss_pred             ccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643           90 DGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV  167 (279)
Q Consensus        90 ~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  167 (279)
                      ...+..+.|+--  +..-.++-+..+|.|.++.............+........                   ...++.|
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~-------------------~~lslD~  129 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV-------------------EALSLDI  129 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe-------------------eeeEEEe
Confidence            345777777642  2112567778889999998654322222222222211111                   1357889


Q ss_pred             cCCCCeEEEecCCCeEEEEecCCCcEE--EEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCC-CceEEEecCCc
Q 023643          168 DPQGGAIFSAAGDSCAYCWDVESSRIK--MVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKS-GKCIKVIDPVK  243 (279)
Q Consensus       168 ~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~  243 (279)
                      ++.+..++++..+|.+.+-+.......  +..+.|+-..+...|+. +.+.+.+|+.|+.+..||+|. ++.+..-.   
T Consensus       130 ~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~---  206 (339)
T KOG0280|consen  130 STSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS---  206 (339)
T ss_pred             eccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc---
Confidence            999999999999999997666555444  47889999999999987 468999999999999999994 33333311   


Q ss_pred             cccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          244 DKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                          +.|...|.++.-+| .+.+|+||+.|-.|++||
T Consensus       207 ----kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  207 ----KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             ----eeeecceEEEecCCCCCceEEEeccccceeeee
Confidence                67888999998776 578999999999999997

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=3e-13  Score=118.31  Aligned_cols=185  Identities=13%  Similarity=0.176  Sum_probs=140.1

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEEEEecC
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYDVKFYG  100 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~  100 (279)
                      +.+-..|.++.-+|    ...+.++|+.||.+++|.-..                   +..+..++. -...|+.+.|+.
T Consensus      2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~-------------------~~~v~~~rt~g~s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGH-------------------GQQVVCFRTAGNSRVTRSRFNH 2261 (2439)
T ss_pred             ecccCceeeecCCC----CCceEEecCCCceEEEEeccC-------------------CCeEEEeeccCcchhhhhhhcc
Confidence            34556788888888    678889999999999999887                   344444432 237899999999


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec--
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA--  178 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  178 (279)
                      +|+  .+..+..||.+.+|....    +.....+.+..                      ....+.|-.  ..+++++  
T Consensus      2262 qGn--k~~i~d~dg~l~l~q~~p----k~~~s~qchnk----------------------~~~Df~Fi~--s~~~tag~s 2311 (2439)
T KOG1064|consen 2262 QGN--KFGIVDGDGDLSLWQASP----KPYTSWQCHNK----------------------ALSDFRFIG--SLLATAGRS 2311 (2439)
T ss_pred             cCC--ceeeeccCCceeecccCC----cceeccccCCc----------------------cccceeeee--hhhhccccC
Confidence            998  899999999999999751    22222222211                      234555543  4556554  


Q ss_pred             -CCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643          179 -GDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       179 -~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                       .++.+.+||..-.   .++.  ..|.+.++++++.|..+.|++|+.+|.|++||++..++++.++        .     
T Consensus      2312 ~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~--------~----- 2376 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ--------A----- 2376 (2439)
T ss_pred             CCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh--------h-----
Confidence             4688999997532   2334  6799999999999999999999999999999999988888873        1     


Q ss_pred             eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          255 SCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                          ++ ...++++|+..|.++||+
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEE
Confidence                44 578899999999999996

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.47  E-value=4.3e-10  Score=88.43  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=137.3

Q ss_pred             CCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      +|.|..|.++.  .....+.........-..++++|    ++++|+++. .+|.|.++++..........       ...
T Consensus        61 ~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~----~g~~l~vany~~g~v~v~~l~~~g~l~~~~-------~~~  129 (345)
T PF10282_consen   61 SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP----DGRFLYVANYGGGSVSVFPLDDDGSLGEVV-------QTV  129 (345)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT----TSSEEEEEETTTTEEEEEEECTTSEEEEEE-------EEE
T ss_pred             CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec----CCCEEEEEEccCCeEEEEEccCCcccceee-------eec
Confidence            46677776554  33344444443445567899999    888888876 58999999998732111000       000


Q ss_pred             e--ccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           79 G--IEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        79 ~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                      .  +.-...-+.-.....++.|+|+++  ++++. -....|.+|+++.....          ..+...+..+...+    
T Consensus       130 ~~~g~g~~~~rq~~~h~H~v~~~pdg~--~v~v~dlG~D~v~~~~~~~~~~~----------l~~~~~~~~~~G~G----  193 (345)
T PF10282_consen  130 RHEGSGPNPDRQEGPHPHQVVFSPDGR--FVYVPDLGADRVYVYDIDDDTGK----------LTPVDSIKVPPGSG----  193 (345)
T ss_dssp             ESEEEESSTTTTSSTCEEEEEE-TTSS--EEEEEETTTTEEEEEEE-TTS-T----------EEEEEEEECSTTSS----
T ss_pred             ccCCCCCcccccccccceeEEECCCCC--EEEEEecCCCEEEEEEEeCCCce----------EEEeeccccccCCC----
Confidence            0  000000011223467899999998  55554 34568999998643211          11111111122222    


Q ss_pred             CCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecC--CCc--EEEEeecC------CcceEEEEEcCCCcEEEEec-CCC
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVE--SSR--IKMVFKGH------SDYLHCIVARNSTNQIVTGS-EDG  223 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~~------~~~i~~i~~~~~~~~l~~~~-~d~  223 (279)
                            .+.+.|+|+++++++.. .++.|.++++.  ++.  .+..+...      ......|+++|+|++|.++. ..+
T Consensus       194 ------PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~  267 (345)
T PF10282_consen  194 ------PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN  267 (345)
T ss_dssp             ------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred             ------CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence                  37899999999876654 57889999988  442  22222211      12578899999999876654 577


Q ss_pred             eEEEEeCC--CCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeC
Q 023643          224 TARIWDCK--SGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILF  278 (279)
Q Consensus       224 ~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~w  278 (279)
                      +|.+|++.  +++..  ..+        ......-..++++|+|++|+++. .++.|.+|
T Consensus       268 sI~vf~~d~~~g~l~~~~~~--------~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  268 SISVFDLDPATGTLTLVQTV--------PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             EEEEEEECTTTTTEEEEEEE--------EESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEEEecCCCceEEEEEE--------eCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            89999993  34332  222        11123368899999999998876 45677776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.47  E-value=7.4e-12  Score=92.38  Aligned_cols=221  Identities=14%  Similarity=0.192  Sum_probs=154.2

Q ss_pred             CCceeeec-cccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWD-EDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |.++|||- .+..+.- ......-+.+++++.+.+    +...|++|-..|++.-+.+...-..               .
T Consensus        45 drtvrv~lkrds~q~w-psI~~~mP~~~~~~~y~~----e~~~L~vg~~ngtvtefs~sedfnk---------------m  104 (404)
T KOG1409|consen   45 DRTVRVWLKRDSGQYW-PSIYHYMPSPCSAMEYVS----ESRRLYVGQDNGTVTEFALSEDFNK---------------M  104 (404)
T ss_pred             cceeeeEEeccccccC-chhhhhCCCCceEeeeec----cceEEEEEEecceEEEEEhhhhhhh---------------c
Confidence            66788885 2332210 111122357899999999    8899999999999998887642100               2


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ...+....|..++..+-|+-...  .+++.+.|..+.---.+....   .    ++.   +  +..              
T Consensus       105 ~~~r~~~~h~~~v~~~if~~~~e--~V~s~~~dk~~~~hc~e~~~~---l----g~Y---~--~~~--------------  156 (404)
T KOG1409|consen  105 TFLKDYLAHQARVSAIVFSLTHE--WVLSTGKDKQFAWHCTESGNR---L----GGY---N--FET--------------  156 (404)
T ss_pred             chhhhhhhhhcceeeEEecCCce--eEEEeccccceEEEeeccCCc---c----cce---E--eec--------------
Confidence            34456667999999999998777  899999988776333221110   0    000   0  000              


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecC--CCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVE--SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ..+++.+.-.  +.+.|...|.|.+..+.  .-.++.++.+|.+.+++++|.|....|.+|..|..+.+||+--.+...-
T Consensus       157 ~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  157 PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence            0112222211  56677777777665554  3467888999999999999999999999999999999999975544433


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .       +.+|...|..+...+--+.|++++.||.|.+|+
T Consensus       235 e-------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  235 E-------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             e-------eccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            2       168889999998888889999999999999996

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=1.3e-13  Score=107.96  Aligned_cols=182  Identities=16%  Similarity=0.171  Sum_probs=129.6

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+.+|.+.|.+++--.    +.+-+++++.|.+|++|.+....-.            .-+..+..+++.|+.+|.++-
T Consensus       728 L~nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~------------~~tsaCQfTY~aHkk~i~~ig  791 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDE------------IGTSACQFTYQAHKKPIHDIG  791 (1034)
T ss_pred             eecccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCc------------cccceeeeEhhhccCccccee
Confidence            457789999999987776    7888999999999999999863110            000234557788999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEE
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIF  175 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  175 (279)
                      |..+..  +++++  ||-|.+||.--+...   ..+....                    ..+.+..+..-|  +...+.
T Consensus       792 fL~~lr--~i~Sc--D~giHlWDPFigr~L---aq~~dap--------------------k~~a~~~ikcl~nv~~~ili  844 (1034)
T KOG4190|consen  792 FLADLR--SIASC--DGGIHLWDPFIGRLL---AQMEDAP--------------------KEGAGGNIKCLENVDRHILI  844 (1034)
T ss_pred             eeeccc--eeeec--cCcceeecccccchh---HhhhcCc--------------------ccCCCceeEecccCcchhee
Confidence            998876  66655  899999996322111   1000000                    000122333333  334444


Q ss_pred             Ee-cCCCeEEEEecCCCcEEEEeec-----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          176 SA-AGDSCAYCWDVESSRIKMVFKG-----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       176 ~~-~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      .| +...+|+++|.+..+...+++-     ..+.+++++..+.|++++++-.+|.|.+.|.++|+.+..+++-
T Consensus       845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm  917 (1034)
T KOG4190|consen  845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM  917 (1034)
T ss_pred             eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence            44 6789999999999887766653     4466899999999999999999999999999999998877643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.1e-10  Score=91.46  Aligned_cols=217  Identities=11%  Similarity=0.172  Sum_probs=139.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-----ecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-----ASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      .+.+.+|++.+.+   ......|...|..+.++|..  ....+|+     .+.=..++||.+........          
T Consensus       145 ~nev~f~~~~~f~---~~~~kl~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~----------  209 (566)
T KOG2315|consen  145 SNEVQFYDLGSFK---TIQHKLSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP----------  209 (566)
T ss_pred             cceEEEEecCCcc---ceeeeeeccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccch----------
Confidence            3567888877732   23445678899999999921  2345555     34556799999873211110          


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEeeC--CC---------cEEEeecCCCccCcceeeeccCcccceEEee
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD--DG---------RICGWRWKEFTESKVPINLQGNHVKPVLDLV  145 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (279)
                          ...++|.  ...=-.+.|++.+.. +|+.++.  |.         ++++.+++   .......             
T Consensus       210 ----~a~ksFF--kadkvqm~WN~~gt~-LLvLastdVDktn~SYYGEq~Lyll~t~---g~s~~V~-------------  266 (566)
T KOG2315|consen  210 ----VANKSFF--KADKVQMKWNKLGTA-LLVLASTDVDKTNASYYGEQTLYLLATQ---GESVSVP-------------  266 (566)
T ss_pred             ----hhhcccc--ccceeEEEeccCCce-EEEEEEEeecCCCccccccceEEEEEec---CceEEEe-------------
Confidence                0011111  112235778887773 4433332  22         34444432   0011111             


Q ss_pred             cCCCCCccccCCCCCCceeEEEcCCCCeEEEe--cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC--
Q 023643          146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSA--AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE--  221 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--  221 (279)
                                ....++|.++.|+|+++.++++  ..=..+.|||++ +.++..|  .+++=.++-|+|.|++|+.++.  
T Consensus       267 ----------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGN  333 (566)
T KOG2315|consen  267 ----------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGN  333 (566)
T ss_pred             ----------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence                      1112358999999999877664  456789999987 7777776  4667788999999999988775  


Q ss_pred             -CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEeCC
Q 023643          222 -DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVILFS  279 (279)
Q Consensus       222 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~wd  279 (279)
                       -|.+-|||+.+.+++..+..        .  .-+-+.|+|||++++|++.      |+.++||+
T Consensus       334 L~G~mEvwDv~n~K~i~~~~a--------~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  334 LPGDMEVWDVPNRKLIAKFKA--------A--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             CCCceEEEeccchhhcccccc--------C--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence             67899999999888888743        2  2356789999999998865      67788874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.45  E-value=5.9e-11  Score=93.33  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=117.6

Q ss_pred             CCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           41 PDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        41 ~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ++++ ++-..+|.|.+.|..+                   .+.+..+......-..+.|+|+++  ++++++.||.|.++
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t-------------------~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~rdg~vsvi   63 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGAT-------------------NKVVARIPTGGAPHAGLKFSPDGR--YLYVANRDGTVSVI   63 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT--------------------SEEEEEE-STTEEEEEE-TT-SS--EEEEEETTSEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCC-------------------CeEEEEEcCCCCceeEEEecCCCC--EEEEEcCCCeEEEE
Confidence            3455 4566789999999998                   566666765444445678999998  88889999999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCcEEEEee
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  198 (279)
                      |+.+.+   .........                       ....++++++|++++++. ..+.+.++|.++.+++..+.
T Consensus        64 D~~~~~---~v~~i~~G~-----------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   64 DLATGK---VVATIKVGG-----------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             ETTSSS---EEEEEE-SS-----------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             ECCccc---EEEEEecCC-----------------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            987543   222222211                       136899999999988775 57999999999999998875


Q ss_pred             cC-------CcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-
Q 023643          199 GH-------SDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-  269 (279)
Q Consensus       199 ~~-------~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  269 (279)
                      ..       ...+..+..+|... ++++--..+.|-+-|....+.+..-.       ...........|+|++++++++ 
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-------i~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-------IKVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-------EE--TTEEEEEE-TTSSEEEEEE
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-------ecccccccccccCcccceeeecc
Confidence            43       34677888888776 55555666888888877655443211       1122345678999999987765 


Q ss_pred             cCcceEEeC
Q 023643          270 RATNYVILF  278 (279)
Q Consensus       270 ~~d~~i~~w  278 (279)
                      ..++.|.++
T Consensus       191 ~~sn~i~vi  199 (369)
T PF02239_consen  191 NGSNKIAVI  199 (369)
T ss_dssp             GGGTEEEEE
T ss_pred             cccceeEEE
Confidence            445555544

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=4.8e-13  Score=117.10  Aligned_cols=177  Identities=16%  Similarity=0.281  Sum_probs=136.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.|++|....++........+. ..|+.+.|+.    .|+.+..+..||.+.+|....                    +
T Consensus      2229 dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~----qGnk~~i~d~dg~l~l~q~~p--------------------k 2283 (2439)
T KOG1064|consen 2229 DGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH----QGNKFGIVDGDGDLSLWQASP--------------------K 2283 (2439)
T ss_pred             CceEEEEeccCCCeEEEeeccCc-chhhhhhhcc----cCCceeeeccCCceeecccCC--------------------c
Confidence            89999998665543222222333 8899999999    899999999999999999983                    5


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEee---CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCG---DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      +....+.|......+.|...    .+++++   .++.+.+||..-......+.  .                      .|
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~----------------------~H 2335 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVH--T----------------------CH 2335 (2439)
T ss_pred             ceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceee--e----------------------ec
Confidence            56677789999999999873    667665   47889999964321111111  1                      22


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ...++++++.|..+.|++|+.+|.|++||++..++++.++.         ++ ...++++|+..|.++||++..-..++.
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence            23479999999999999999999999999998888887764         33 568999999999999999988777777


Q ss_pred             ecC
Q 023643          239 IDP  241 (279)
Q Consensus       239 ~~~  241 (279)
                      ++.
T Consensus      2406 ~p~ 2408 (2439)
T KOG1064|consen 2406 FPS 2408 (2439)
T ss_pred             Cch
Confidence            653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.2e-11  Score=97.27  Aligned_cols=186  Identities=15%  Similarity=0.206  Sum_probs=127.0

Q ss_pred             CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee----------ccCcccceEEeecCC------CCCc
Q 023643           89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL----------QGNHVKPVLDLVNHQ------HKGP  152 (279)
Q Consensus        89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~------~~~~  152 (279)
                      |....+.|..+|+|+ ..++||-....|++||+.+.. .+....+          .....+.+ .+.+..      ..+.
T Consensus        50 ~p~ast~ik~s~DGq-Y~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQ-YLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CccccceeEecCCCc-EEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhcCe
Confidence            677788999999998 456788889999999986531 1111111          11111110 000000      0000


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      .-...-...-..++++.-..-|+.++....|+-+++..|+-+..|....+.++++..++...+|++|+.+|.|..||.++
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            00000011234566664444455566667899999999999999998889999999999999999999999999999998


Q ss_pred             CceEEEecCCccccccCc-----ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          233 GKCIKVIDPVKDKQLKGV-----ISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ......+.....  +..|     ...|+++.|+.+|-.+++|+.+|.+.+||
T Consensus       207 ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  207 KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence            877777754432  1222     23599999999999999999999999987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=3.9e-11  Score=97.23  Aligned_cols=158  Identities=11%  Similarity=0.085  Sum_probs=102.7

Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ..+..+...+....|+|+++  +|+.+..+   ..|++||+.+.... ......+                         
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~-------------------------  234 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQRE-KVASFPG-------------------------  234 (417)
T ss_pred             EEeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEE-EeecCCC-------------------------
Confidence            34445666788999999998  77766543   47999998643110 0000100                         


Q ss_pred             CceeEEEcCCCCeEEE-ecCC--CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCCCc
Q 023643          161 ENNAIAVDPQGGAIFS-AAGD--SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKSGK  234 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~  234 (279)
                      .+.+++|+|+++.|+. .+.+  ..|++||+.+++... +..+........|+|++++|+..+. ++  .|.++|+.+++
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            1356899999987754 4444  358999998775543 3334444556789999998876554 33  58888887766


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc---eEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN---YVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~wd  279 (279)
                      .. .+        ..+...+..+.|+|++++|+.++.++   .|.+||
T Consensus       314 ~~-~l--------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d  352 (417)
T TIGR02800       314 VR-RL--------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD  352 (417)
T ss_pred             EE-Ee--------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence            43 33        22334566789999999998887665   565553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.43  E-value=9.2e-11  Score=83.99  Aligned_cols=221  Identities=11%  Similarity=0.001  Sum_probs=141.3

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      |...+|...+.+ ..++.-..|...|+-+.-..+   ....+..++.|.++++.++....                    
T Consensus        94 g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd---~~~~~~i~sndht~k~~~~~~~s--------------------  149 (344)
T KOG4532|consen   94 GQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCD---LKFPLNIASNDHTGKTMVVSGDS--------------------  149 (344)
T ss_pred             ceeeeecccCcc-cceeeecccccchhhhhhhcc---cccceeeccCCcceeEEEEecCc--------------------
Confidence            455666655443 223333334443332221111   33456677888888888887531                    


Q ss_pred             cccccCCccC--eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           83 DGFLHGHDGP--AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        83 ~~~~~~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      . .+..|...  +.++.+++++.  ++++.+....|..|.++...+...........          +            
T Consensus       150 ~-~~~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D------------  204 (344)
T KOG4532|consen  150 N-KFAVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------D------------  204 (344)
T ss_pred             c-cceeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccC----------C------------
Confidence            1 11223333  78899999998  99999999999999987543222211111111          0            


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----eecCCcceEEEEEcCCC--cEEEEecCCCeEEEEeCCCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-----FKGHSDYLHCIVARNST--NQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~i~~i~~~~~~--~~l~~~~~d~~i~vwd~~~~  233 (279)
                      .-.+.+|+.....+|++..||++.|||++.......     -..|.+.++.+.|++-|  .+|+..-.=+.+.+-|+|++
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            125788999999999999999999999997543322     23488999999999855  34555555678999999999


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      +..+.+..............|..-.|+.++.-+.+.+++
T Consensus       285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             ceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            887777655443333333448888888777665555443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.1e-10  Score=94.06  Aligned_cols=202  Identities=13%  Similarity=0.052  Sum_probs=114.3

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CC----cEEEEeCCCCCcccccccCCcccceeee
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DG----SITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |.+.++++++...+..+   .+.....+|+|    ||+.||..+. +|    .+.+|++..+..                
T Consensus       213 I~~~~l~~g~~~~lt~~---~g~~~~p~wSP----DG~~Laf~s~~~g~~di~~~~~~~~~g~~----------------  269 (428)
T PRK01029        213 IFLGSLENPAGKKILAL---QGNQLMPTFSP----RKKLLAFISDRYGNPDLFIQSFSLETGAI----------------  269 (428)
T ss_pred             EEEEECCCCCceEeecC---CCCccceEECC----CCCEEEEEECCCCCcceeEEEeecccCCC----------------
Confidence            34445555443333333   34455689999    8988876542 23    233466554210                


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      +.+......+.+.....+|+|+++  .|+..+ .+|...+|.+...........+....                     
T Consensus       270 g~~~~lt~~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~---------------------  326 (428)
T PRK01029        270 GKPRRLLNEAFGTQGNPSFSPDGT--RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY---------------------  326 (428)
T ss_pred             CcceEeecCCCCCcCCeEECCCCC--EEEEEECCCCCceEEEEECcccccceEEeccCC---------------------
Confidence            111222222223345679999998  666554 56766666543211111111111000                     


Q ss_pred             CCCceeEEEcCCCCeEEEecCC---CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC---CCeEEEEeCCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAGD---SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---DGTARIWDCKS  232 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~  232 (279)
                       ..+....|+|+|+.|+..+.+   ..|.+||+.+++...... ....+....|+|+|+.|+....   ...|.++|+..
T Consensus       327 -~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        327 -RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             -CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence             024577899999988765443   479999999887654332 3345677899999998775432   35688999987


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                      ++......         ....+...+|+|-.
T Consensus       405 g~~~~Lt~---------~~g~~~~p~Ws~~~  426 (428)
T PRK01029        405 KKTRKIVI---------GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCEEEeec---------CCCcccCceecCCC
Confidence            76554431         22345567787743

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=8.5e-10  Score=85.15  Aligned_cols=239  Identities=13%  Similarity=0.050  Sum_probs=137.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC----------CCcEEEEeCCCCCcccccccCC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS----------DGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      .|.|.+.|.++.+  .+..+..-..+- .+ ++|    |++.|.++..          +..|.+||..+.          
T Consensus        26 ~~~v~ViD~~~~~--v~g~i~~G~~P~-~~-~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------   87 (352)
T TIGR02658        26 TTQVYTIDGEAGR--VLGMTDGGFLPN-PV-VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------   87 (352)
T ss_pred             CceEEEEECCCCE--EEEEEEccCCCc-ee-ECC----CCCEEEEEeccccccccCCCCCEEEEEECccC----------
Confidence            4778888877753  344444322222 24 899    8887777655          789999999994          


Q ss_pred             cccceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEee-C-CCcEEEeecCCCccCcceeeeccCcccc--
Q 023643           72 SKVQQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCG-D-DGRICGWRWKEFTESKVPINLQGNHVKP--  140 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~--  140 (279)
                               +.+..+.--       ......+.++|+++  +|+... . +..|.+.|+...+....+....+...-+  
T Consensus        88 ---------~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~  156 (352)
T TIGR02658        88 ---------LPIADIELPEGPRFLVGTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA  156 (352)
T ss_pred             ---------cEEeEEccCCCchhhccCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec
Confidence                     333333211       12234688999998  666554 3 7899999987543222111111100000  


Q ss_pred             -----eEEe-------ecCC-C---CCccccCCC-CCCc-eeEEEcC-CCCeEEEecCCCeEEEEecCCC-----cEEEE
Q 023643          141 -----VLDL-------VNHQ-H---KGPWGALSP-VPEN-NAIAVDP-QGGAIFSAAGDSCAYCWDVESS-----RIKMV  196 (279)
Q Consensus       141 -----~~~~-------~~~~-~---~~~~~~~~~-~~~i-~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-----~~~~~  196 (279)
                           +.+.       .... .   ......+.. ...+ ..-.|.+ ++.++++... |.|.+.|+...     +....
T Consensus       157 e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       157 NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence                 0000       0000 0   000000000 0000 0003344 7877777666 99999996432     33332


Q ss_pred             eec-------CCcceEEEEEcCCCcEEEEec----------CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          197 FKG-------HSDYLHCIVARNSTNQIVTGS----------EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       197 ~~~-------~~~~i~~i~~~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      +..       ..+.+.-++++|+++.+....          ..+.|.++|..+++.+..+..       +  ..+..+++
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------G--~~~~~iav  306 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------G--HEIDSINV  306 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-------C--CceeeEEE
Confidence            221       223344599999988877642          235799999999999999852       2  36789999


Q ss_pred             cCCCC-EEEEEc-CcceEEeCC
Q 023643          260 DASES-WLVRVR-ATNYVILFS  279 (279)
Q Consensus       260 ~~~~~-~l~~~~-~d~~i~~wd  279 (279)
                      +||++ +|++.. .++.|.++|
T Consensus       307 S~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       307 SQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             CCCCCeEEEEeCCCCCcEEEEE
Confidence            99999 887666 567787765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.39  E-value=1.8e-10  Score=88.92  Aligned_cols=207  Identities=14%  Similarity=0.113  Sum_probs=144.9

Q ss_pred             CCCceeeeccccccccceeee-eec--------ccceEEEE-ECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643            1 MCGDSTNWDEDAYRKSILKER-EIL--------TRTVFRTV-WGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~-~~~--------~~~v~~~~-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      +-|+|.+||+++...+.+..- ...        ..+..-+. |++.   +|++++..+. |+..|.+...+         
T Consensus       285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~---~Gd~ia~VSR-GkaFi~~~~~~---------  351 (668)
T COG4946         285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV---NGDYIALVSR-GKAFIMRPWDG---------  351 (668)
T ss_pred             cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC---CCcEEEEEec-CcEEEECCCCC---------
Confidence            358899999887654333211 111        11111222 5553   7899988876 67777776642         


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC-cEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG-RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                                 .. .--+|.+.|.-..+..+.+  -++.|..|| .+-|+|.+...... +....               
T Consensus       352 -----------~~-iqv~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~kr-~e~~l---------------  401 (668)
T COG4946         352 -----------YS-IQVGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEVKR-IEKDL---------------  401 (668)
T ss_pred             -----------ee-EEcCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceEEE-eeCCc---------------
Confidence                       11 1124677788888887776  788899999 89999976532111 11111               


Q ss_pred             CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe----E
Q 023643          150 KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT----A  225 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~----i  225 (279)
                                +.|.++..+|+|+.++++.....|-+.|++++.....=+...+-|+.+.|+|+++++|-+-.+|.    |
T Consensus       402 ----------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I  471 (668)
T COG4946         402 ----------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI  471 (668)
T ss_pred             ----------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence                      12789999999999999999999999999999887777777888999999999999998877764    8


Q ss_pred             EEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       226 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      +++|+..++......+      .++   =.+-+|+|++++|.--
T Consensus       472 klydm~~~Kiy~vTT~------ta~---DfsPaFD~d~ryLYfL  506 (668)
T COG4946         472 KLYDMDGGKIYDVTTP------TAY---DFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEEecCCCeEEEecCC------ccc---ccCcccCCCCcEEEEE
Confidence            9999998887665432      222   2456899999887643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=1.6e-11  Score=89.66  Aligned_cols=235  Identities=12%  Similarity=0.143  Sum_probs=145.6

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC------------ccC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH------------DGP   92 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~   92 (279)
                      ...|+++.|..    .|.+|++|...|.|.+|.-+... -..             .+....+++|            ...
T Consensus        26 ad~ItaVefd~----tg~YlatGDkgGRVvlfer~~s~-~ce-------------ykf~teFQshe~EFDYLkSleieEK   87 (460)
T COG5170          26 ADKITAVEFDE----TGLYLATGDKGGRVVLFEREKSY-GCE-------------YKFFTEFQSHELEFDYLKSLEIEEK   87 (460)
T ss_pred             cceeeEEEecc----ccceEeecCCCceEEEeeccccc-ccc-------------hhhhhhhcccccchhhhhhccHHHH
Confidence            46799999999    89999999999999999876421 000             1112223333            346


Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC-----cceeeeccCcccceEEe------ecCCCC-------Cccc
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES-----KVPINLQGNHVKPVLDL------VNHQHK-------GPWG  154 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~  154 (279)
                      |..+.|..++....++..+.|.+|++|.+......     .....+......++...      ....+.       ...-
T Consensus        88 in~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy  167 (460)
T COG5170          88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY  167 (460)
T ss_pred             hhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec
Confidence            88899987765567777888999999998653110     00000000001111100      000110       0011


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc---EEEEeecCC-----cceEEEEEcCC-CcEEEEecCCCeE
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR---IKMVFKGHS-----DYLHCIVARNS-TNQIVTGSEDGTA  225 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~-----~~i~~i~~~~~-~~~l~~~~~d~~i  225 (279)
                      ...|..-|++++|+.+...++++. |-.|.+|++.-..   .+-.++.|.     .-|++..|+|. .+.+.-.+..|.|
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             cccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            123344588999999888777654 7889999987432   222334443     35788899995 6777778889999


Q ss_pred             EEEeCCCCce--------EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          226 RIWDCKSGKC--------IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       226 ~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++-|+|...+        ...+.+.....+.+-...|..+.|+++|+++++-+. -+|.+||
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence            9999984321        111222222233444567889999999999988754 5789987

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=2.2e-09  Score=84.47  Aligned_cols=241  Identities=12%  Similarity=0.183  Sum_probs=138.1

Q ss_pred             Cceeeeccc--cccccceeeeeecccceEEEEECCCCCCCCCEEEEecC----CCcEEEEeCCCCCcccccccCCcccce
Q 023643            3 GDSTNWDED--AYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS----DGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         3 G~v~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      +.|.+|+++  +.....+... .-......++++|    ++++|.+...    +|.|..|.+......            
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~------------   75 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGT------------   75 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTE------------
T ss_pred             CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcce------------
Confidence            567777763  3333333332 2345566789999    7888877755    578999988763100            


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                         .+.+............++++|++.  +|+++. .+|+|.+++++.............+.           ..++-..
T Consensus        76 ---L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----------g~g~~~~  139 (345)
T PF10282_consen   76 ---LTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----------GSGPNPD  139 (345)
T ss_dssp             ---EEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----------EEESSTT
T ss_pred             ---eEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccC-----------CCCCccc
Confidence               122222222333456789999998  666654 69999999987532111111110000           0000001


Q ss_pred             CCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCc--EE--EEee-cCCcceEEEEEcCCCcEE-EEecCCCeEEEE
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR--IK--MVFK-GHSDYLHCIVARNSTNQI-VTGSEDGTARIW  228 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~~~-~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vw  228 (279)
                      ........++.++|+++++++.. ....|.+|++....  +.  ..+. ......+.++|+|+++++ ++.-.++.|.++
T Consensus       140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~  219 (345)
T PF10282_consen  140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF  219 (345)
T ss_dssp             TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence            11112367899999999887754 34579999997654  32  2232 234567999999998876 455568889999


Q ss_pred             eCC--CCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeC
Q 023643          229 DCK--SGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILF  278 (279)
Q Consensus       229 d~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~w  278 (279)
                      ++.  .++  .+..+..... ... .......++++|||++|+++. ..+.|.+|
T Consensus       220 ~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf  272 (345)
T PF10282_consen  220 DYDPSDGSLTEIQTISTLPE-GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVF  272 (345)
T ss_dssp             EEETTTTEEEEEEEEESCET-TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred             eecccCCceeEEEEeeeccc-ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence            988  443  2223321110 011 112578899999999988764 45667665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.36  E-value=1.9e-11  Score=89.32  Aligned_cols=229  Identities=15%  Similarity=0.185  Sum_probs=141.9

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc--------ccccCCc---------------ccceeeeccc
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL--------PLGLSNS---------------KVQQLLGIEP   82 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~---------------~~~~~~~~~~   82 (279)
                      ..|..+.|...  .....++..+.|.+|++|.+.......        .+.....               ..+.++...+
T Consensus        86 EKin~I~w~~~--t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p  163 (460)
T COG5170          86 EKINAIEWFDD--TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP  163 (460)
T ss_pred             HHhhheeeecC--CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence            56788888763  133456677899999999997642221        1111111               1122333444


Q ss_pred             cccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           83 DGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        83 ~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+.. ..|.--+++++|..+.+  .++++ .|=.|.+|+++-......+...+.+....+..+                 
T Consensus       164 ~rvyaNaH~yhiNSiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteV-----------------  223 (460)
T COG5170         164 CRVYANAHPYHINSISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEV-----------------  223 (460)
T ss_pred             ceeccccceeEeeeeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHH-----------------
Confidence            4444 45778899999999886  66665 478899999875444444444444443332221                 


Q ss_pred             ceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEE------EE----------eecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643          162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIK------MV----------FKGHSDYLHCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------~~----------~~~~~~~i~~i~~~~~~~~l~~~~~d~~  224 (279)
                      |++..|+|... .+.-.+..|.|++-|+++..+.      ..          |.+-...|..+.|+++|+++++-+. -+
T Consensus       224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt  302 (460)
T COG5170         224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT  302 (460)
T ss_pred             HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce
Confidence            67888998544 4555667899999999853211      11          1122346788999999999998754 46


Q ss_pred             EEEEeCCC-CceEEEecCCcccc--c---c--CcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          225 ARIWDCKS-GKCIKVIDPVKDKQ--L---K--GVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       225 i~vwd~~~-~~~~~~~~~~~~~~--~---~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      |++||.+. ..++.+++.+....  +   .  .---.-..+.|+.|...+++|+..+..-+
T Consensus       303 vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         303 VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence            99999975 45777775543210  0   0  00012245678888888888887665444

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.32  E-value=7.7e-11  Score=87.16  Aligned_cols=232  Identities=15%  Similarity=0.167  Sum_probs=137.6

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccc---------------ccCCcccceeee--
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPL---------------GLSNSKVQQLLG--   79 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~~~--   79 (279)
                      .++....|...|..+-|+.    ....+++.+.|..+.---.+.+.....+               .+......++..  
T Consensus       106 ~~r~~~~h~~~v~~~if~~----~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr  181 (404)
T KOG1409|consen  106 FLKDYLAHQARVSAIVFSL----THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK  181 (404)
T ss_pred             hhhhhhhhhcceeeEEecC----CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence            3456667899999999998    7888999988876643222322222111               111111111111  


Q ss_pred             -----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           80 -----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        80 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                           ..++.++.+|.+++.+++|.|...  .|.+|..|..+.+||+--  .......+.++..                
T Consensus       182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg--~~g~~~el~gh~~----------------  241 (404)
T KOG1409|consen  182 LEQNGCQLITTFNGHTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG--RKGTAYELQGHND----------------  241 (404)
T ss_pred             EeecCCceEEEEcCcccceEEEEEcCCCc--EEEeccccCceEEEeccC--Ccceeeeeccchh----------------
Confidence                 456678889999999999999887  999999999999999842  2222233333221                


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-----------------------------eec----CC
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-----------------------------FKG----HS  201 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------------------------~~~----~~  201 (279)
                            .|..+...+.-+.+++++.||.|.+||....+....                             ++.    +.
T Consensus       242 ------kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkc  315 (404)
T KOG1409|consen  242 ------KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKC  315 (404)
T ss_pred             ------hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence                  255666666667899999999999999874322110                             000    11


Q ss_pred             cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       202 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +...|...+.......+-+..-.+|+-|.-... ++.......+.+..-...|+.+.+...-.+|+|++.|..|++||
T Consensus       316 g~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~-i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd  392 (404)
T KOG1409|consen  316 GKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPT-IKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD  392 (404)
T ss_pred             hhhcCcccccCccccccccceeEEEEecccchh-hhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence            112222222222223333444455555432111 11111100011122335689999988888999999999999998

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=9.1e-10  Score=89.53  Aligned_cols=150  Identities=17%  Similarity=0.129  Sum_probs=96.0

Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ..+..+...+....|+|+++  .|+..+.+   ..|.+|++.+.... ......+                         
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g-------------------------  243 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEG-------------------------  243 (430)
T ss_pred             eEEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEE-EccCCCC-------------------------
Confidence            34445667889999999998  77665533   35888887643211 1111111                         


Q ss_pred             CceeEEEcCCCCeEE-EecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCCCCc
Q 023643          161 ENNAIAVDPQGGAIF-SAAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCKSGK  234 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~  234 (279)
                      .+....|+|+|+.|+ +...++  .|++||+.+++... +..+........|+|+|+.|+..+. ++  .|+++|+.+++
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            134679999999776 444444  68899998876543 4445555667889999988766553 33  57778887776


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ......       .+  .......|+|+|++|+..+.
T Consensus       323 ~~~lt~-------~~--~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        323 AERVTF-------VG--NYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             EEEeec-------CC--CCccceEECCCCCEEEEEEc
Confidence            543321       11  12245689999999887654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=3.3e-09  Score=94.13  Aligned_cols=233  Identities=12%  Similarity=0.137  Sum_probs=132.3

Q ss_pred             eEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           28 VFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      -..+++.+    +++.|.++ ...+.|+++|+.+..... +.-.. .......+........ -.....++++|++. .+
T Consensus       626 P~GIavd~----~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G-~~g~~~~gg~~~~~~~-ln~P~gVa~dp~~g-~L  697 (1057)
T PLN02919        626 PQGLAYNA----KKNLLYVADTENHALREIDFVNETVRT-LAGNG-TKGSDYQGGKKGTSQV-LNSPWDVCFEPVNE-KV  697 (1057)
T ss_pred             CcEEEEeC----CCCEEEEEeCCCceEEEEecCCCEEEE-EeccC-cccCCCCCChhhhHhh-cCCCeEEEEecCCC-eE
Confidence            47788988    67755554 456789999987632111 00000 0000000000000000 11235789999443 27


Q ss_pred             EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE-EecCCCeEEE
Q 023643          107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF-SAAGDSCAYC  185 (279)
Q Consensus       107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i  185 (279)
                      +++.+.++.|++||..+..    ...+.+.....    ......   ...........++++|++..|+ +-+.++.|++
T Consensus       698 yVad~~~~~I~v~d~~~g~----v~~~~G~G~~~----~~~g~~---~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv  766 (1057)
T PLN02919        698 YIAMAGQHQIWEYNISDGV----TRVFSGDGYER----NLNGSS---GTSTSFAQPSGISLSPDLKELYIADSESSSIRA  766 (1057)
T ss_pred             EEEECCCCeEEEEECCCCe----EEEEecCCccc----cCCCCc---cccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence            7788888999999975431    11111110000    000000   0000112347899999998555 4556789999


Q ss_pred             EecCCCcEEEEeec-------------C--------CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc-
Q 023643          186 WDVESSRIKMVFKG-------------H--------SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK-  243 (279)
Q Consensus       186 ~d~~~~~~~~~~~~-------------~--------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-  243 (279)
                      ||+.++.......+             .        -.....++++++|+.+++-+.++.|++||..++.......... 
T Consensus       767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~  846 (1057)
T PLN02919        767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA  846 (1057)
T ss_pred             EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence            99987653211100             0        1134689999999999999999999999998776554331100 


Q ss_pred             ----cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          244 ----DKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                          .....+.-.....++++++|+.+++-+.++.|++||
T Consensus       847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence                000112223567899999999999999999999986

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.30  E-value=1.4e-10  Score=87.39  Aligned_cols=164  Identities=17%  Similarity=0.151  Sum_probs=107.6

Q ss_pred             EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643           29 FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL  108 (279)
Q Consensus        29 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  108 (279)
                      ..+..+|    ++.++|++..+....++++......               .+...... -...-+++.|..+..  ...
T Consensus        66 ~~~~~s~----~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~-v~~~~~ai~~~~~~~--sv~  123 (390)
T KOG3914|consen   66 ALVLTSD----SGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSC-VPKRPTAISFIREDT--SVL  123 (390)
T ss_pred             cccccCC----CceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEee-cccCcceeeeeeccc--eEE
Confidence            3344566    8899999999888888888763210               01111111 112234445554444  333


Q ss_pred             EeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          109 SCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       109 s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .+..   ...+.+|....    ......                      +.|...++.++|+||++.++++..|..|++
T Consensus       124 v~dkagD~~~~di~s~~~----~~~~~~----------------------lGhvSml~dVavS~D~~~IitaDRDEkIRv  177 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADS----GRCEPI----------------------LGHVSMLLDVAVSPDDQFIITADRDEKIRV  177 (390)
T ss_pred             EEeecCCceeeeeecccc----cCcchh----------------------hhhhhhhheeeecCCCCEEEEecCCceEEE
Confidence            3333   33444444321    111111                      122234789999999999999999999999


Q ss_pred             EecCCCcEEEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          186 WDVESSRIKMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       186 ~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      -....-..+..|. ||...|..++.-+ +..|+++|.|++|++||+++|+++.+++.
T Consensus       178 s~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  178 SRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             EecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence            8877666666654 6999999999865 46699999999999999999999877653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2.6e-08  Score=74.65  Aligned_cols=236  Identities=8%  Similarity=0.093  Sum_probs=141.8

Q ss_pred             CCceeeeccccccc-cceeeeeecccceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRK-SILKEREILTRTVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      +.-|++|++++..- ......-.+.+..+-|+|+|    +.+.|.++..   +|.|-.|.++.....             
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~----~~~~LY~v~~~~~~ggvaay~iD~~~G~-------------   77 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP----DQRHLYVVNEPGEEGGVAAYRIDPDDGR-------------   77 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC----CCCEEEEEEecCCcCcEEEEEEcCCCCe-------------
Confidence            45688998874431 11223344667889999999    8888877654   577888877752111             


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        ...+.....-..+-.-++++++++  +++++ ...|.|.++-++.............+           ...++- ..
T Consensus        78 --Lt~ln~~~~~g~~p~yvsvd~~g~--~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h-----------~g~~p~-~r  141 (346)
T COG2706          78 --LTFLNRQTLPGSPPCYVSVDEDGR--FVFVANYHSGSVSVYPLQADGSLQPVVQVVKH-----------TGSGPH-ER  141 (346)
T ss_pred             --EEEeeccccCCCCCeEEEECCCCC--EEEEEEccCceEEEEEcccCCccccceeeeec-----------CCCCCC-cc
Confidence              011111111223337899999998  66655 45789999998654222222111111           111111 11


Q ss_pred             CCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCC
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCK  231 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~  231 (279)
                      .....+....+.|++++|++..- --.|.+|++..+++...-.   ......+.|.|+|++++....+ .+++|-+|...
T Consensus       142 Q~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         142 QESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             ccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence            11112678899999999888654 3569999999775433211   2345679999999999876555 59999999987


Q ss_pred             CC-ceEEEecCCc--cccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          232 SG-KCIKVIDPVK--DKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       232 ~~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      .. ..+..++...  ...+. -..+..++..+|||++|.++..
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             CCCceEEEeeeeccCccccC-CCCceeEEEECCCCCEEEEecC
Confidence            63 2222222111  01111 2345678889999999988743

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.27  E-value=1.8e-09  Score=77.52  Aligned_cols=176  Identities=11%  Similarity=-0.026  Sum_probs=115.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ...+||.|+..|...+|.+.+..                  ..+.....|...|+-+.=.-+.. ..+.-++.|.++++.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~------------------~h~~~cd~snn~v~~~~r~cd~~-~~~~i~sndht~k~~  143 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTND------------------GHLYQCDVSNNDVTLVKRYCDLK-FPLNIASNDHTGKTM  143 (344)
T ss_pred             cccEEEeccccceeeeecccCcc------------------cceeeecccccchhhhhhhcccc-cceeeccCCcceeEE
Confidence            34689999999999999998742                  11222222333222211111111 156777889999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC-cE-EE-E
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RI-KM-V  196 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~-~  196 (279)
                      +++-...........      +                   .+.+++++++++++++.+....|-.|.+... +. ++ .
T Consensus       144 ~~~~~s~~~~~h~~~------~-------------------~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~  198 (344)
T KOG4532|consen  144 VVSGDSNKFAVHNQN------L-------------------TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY  198 (344)
T ss_pred             EEecCcccceeeccc------c-------------------ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE
Confidence            876332111111110      0                   1478999999999999999999999988753 22 22 2


Q ss_pred             eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE-ecCCccccccCcceeeeEEEEcCCC
Q 023643          197 FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV-IDPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       197 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                      ....+..-.+..|+.....+|++..||++.|||+|....... .....    ..|.+.+..+.|++.|
T Consensus       199 ~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr----p~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  199 EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR----PHHNGAFRVCRFSLYG  262 (344)
T ss_pred             ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC----CCCCCceEEEEecCCC
Confidence            223344557788999889999999999999999997543332 22222    5688999999999865

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=8.4e-10  Score=89.67  Aligned_cols=192  Identities=10%  Similarity=0.086  Sum_probs=109.1

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-ecCCCc--EEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSDGS--ITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.+||+++.+...+....   +.....+|+|    +++.|+. .+.+|.  |.++|+.++                   
T Consensus       243 ~L~~~dl~tg~~~~lt~~~---g~~~~~~wSP----DG~~La~~~~~~g~~~Iy~~dl~tg-------------------  296 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFP---GINGAPRFSP----DGKKLALVLSKDGQPEIYVVDIATK-------------------  296 (448)
T ss_pred             EEEEEECCCCCeEEecCCC---CCcCCeeECC----CCCEEEEEEeCCCCeEEEEEECCCC-------------------
Confidence            3666677665433333332   3345689999    8887765 456665  666777653                   


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEE-eeCCCcEEEe--ecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDGRICGW--RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      + ...+..+........|+|+++  .|+. ...++...+|  |+....  .......+.                     
T Consensus       297 ~-~~~lt~~~~~~~~p~wSpDG~--~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~---------------------  350 (448)
T PRK04792        297 A-LTRITRHRAIDTEPSWHPDGK--SLIFTSERGGKPQIYRVNLASGK--VSRLTFEGE---------------------  350 (448)
T ss_pred             C-eEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCC--EEEEecCCC---------------------
Confidence            1 122333444556789999998  5554 4445554554  443221  111111110                     


Q ss_pred             CCCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CC--eEEEEeCC
Q 023643          158 PVPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DG--TARIWDCK  231 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~  231 (279)
                         .....+|+|++++++..+. ++  .|.++|+.+++... +... .......|+|+|+.|+..+. ++  .+.+++. 
T Consensus       351 ---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-  424 (448)
T PRK04792        351 ---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-  424 (448)
T ss_pred             ---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence               0234689999998876554 33  56678888776543 2211 11224479999998776554 33  3777776 


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      +|+....+        ..+...+...+|+|
T Consensus       425 ~G~~~~~l--------~~~~g~~~~p~Wsp  446 (448)
T PRK04792        425 DGRFKARL--------PAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCceEEC--------cCCCCCcCCCccCC
Confidence            56666666        23334566777876

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.26  E-value=2.8e-11  Score=86.12  Aligned_cols=207  Identities=11%  Similarity=0.111  Sum_probs=119.1

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      +..+.++.     ...|+++..++.+......+..+....+....       ..+...+..|.++-.+-..+-.++  .+
T Consensus        39 ~~~~~~v~-----~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~-------i~~~~~~a~~sep~p~~~~s~~~t--~V  104 (319)
T KOG4714|consen   39 LSKVSLSA-----EYILFTGETSSQIISLGKGRGRCISLWERDDG-------IDPFKVLAKNSEIDPNDACTMTDN--RV  104 (319)
T ss_pred             EEEeechh-----hheeecccchhheeeeccceEEEechhhcccC-------cCceeeeeccCCCCCcccccccCC--ce
Confidence            66666665     46677877777776666554322111111000       223333434444332222222333  69


Q ss_pred             EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-----CCe
Q 023643          108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-----DSC  182 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~  182 (279)
                      ++++.||.+.+++.+...  .........+..                      -.+.+....++.+.++..     -+.
T Consensus       105 ~~~~~dg~~~v~s~~~~~--~~~~~i~~~~~~----------------------~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen  105 CIGYADGSLAVFSTDKDL--ALMSRIPSIHSG----------------------SASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             EecCCCceEEEEechHHH--hhhhhccccccc----------------------ccccceeecccEEecCCcceEeeccc
Confidence            999999999999975411  100000000000                      011222223333433321     234


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      .+.|+++..+.+..-+.....|.+++-+|. .+.+++|+.||.+-+||.+.......+       +..|+.+++.+-|+|
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-------l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-------LKAHKAEIWEVHFHP  233 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-------HHHhhhhhhheeccC
Confidence            556665543322222222344899999995 677888999999999999987433332       378999999999999


Q ss_pred             -CCCEEEEEcCcceEEeCC
Q 023643          262 -SESWLVRVRATNYVILFS  279 (279)
Q Consensus       262 -~~~~l~~~~~d~~i~~wd  279 (279)
                       ++..|+++++||.+..||
T Consensus       234 k~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             CCchheeEecCCCcEEEEc
Confidence             578899999999999997

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.3e-08  Score=74.94  Aligned_cols=227  Identities=10%  Similarity=0.115  Sum_probs=136.2

Q ss_pred             Cceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            3 GDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         3 G~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |.|-.|.++.  ++...+........+-+.++.++    ++++++++. ..|.|.++.++......              
T Consensus        64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~----~g~~vf~AnY~~g~v~v~p~~~dG~l~--------------  125 (346)
T COG2706          64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE----DGRFVFVANYHSGSVSVYPLQADGSLQ--------------  125 (346)
T ss_pred             CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC----CCCEEEEEEccCceEEEEEcccCCccc--------------
Confidence            4444444332  44333433333334447889999    898888876 56899999997632111              


Q ss_pred             ccccccccCCccC----------eEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643           80 IEPDGFLHGHDGP----------AYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ  148 (279)
Q Consensus        80 ~~~~~~~~~h~~~----------v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (279)
                       ..+. +..|.++          +....+.|+++  +|++..- -..|.+|++.++.......            .....
T Consensus       126 -~~v~-~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~y~~~dg~L~~~~~------------~~v~~  189 (346)
T COG2706         126 -PVVQ-VVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFLYDLDDGKLTPADP------------AEVKP  189 (346)
T ss_pred             -ccee-eeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEEEEcccCccccccc------------cccCC
Confidence             1111 1113332          77889999998  7777653 3468899987432111100            00011


Q ss_pred             CCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCC-cEEEEeec---------CCcceEEEEEcCCCcEEE
Q 023643          149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESS-RIKMVFKG---------HSDYLHCIVARNSTNQIV  217 (279)
Q Consensus       149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~---------~~~~i~~i~~~~~~~~l~  217 (279)
                      ..          .-+-|.|+|++++.++.+. +++|-+|..... ..+..++.         ...+.-+|..+++|++|.
T Consensus       190 G~----------GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         190 GA----------GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             CC----------CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            11          2478999999998877654 889999998763 22233321         234567889999999998


Q ss_pred             EecC-CCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc-eEEeC
Q 023643          218 TGSE-DGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN-YVILF  278 (279)
Q Consensus       218 ~~~~-d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~w  278 (279)
                      ++.. ...|.+|.+... ..+..+...     ..+...-..+.|+|.+++|+++..++ .|.+|
T Consensus       260 asNRg~dsI~~f~V~~~~g~L~~~~~~-----~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         260 ASNRGHDSIAVFSVDPDGGKLELVGIT-----PTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             EecCCCCeEEEEEEcCCCCEEEEEEEe-----ccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            8753 346888877542 222222110     22333457788999999999988754 45554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.24  E-value=1.7e-10  Score=86.97  Aligned_cols=154  Identities=16%  Similarity=0.115  Sum_probs=104.2

Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      ...+..++.+.  +++.+..+....+++++.........        ...++.              ..-+++.+..+..
T Consensus        65 ~~~~~~s~~~~--llAv~~~~K~~~~f~~~~~~~~~kl~--------~~~~v~--------------~~~~ai~~~~~~~  120 (390)
T KOG3914|consen   65 PALVLTSDSGR--LVAVATSSKQRAVFDYRENPKGAKLL--------DVSCVP--------------KRPTAISFIREDT  120 (390)
T ss_pred             ccccccCCCce--EEEEEeCCCceEEEEEecCCCcceee--------eEeecc--------------cCcceeeeeeccc
Confidence            34455667776  88888777777777776432200000        000000              0124455555444


Q ss_pred             eEEEec---CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          173 AIFSAA---GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       173 ~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                      ...++.   ....+.+|....+.+ ..+.+|-..++.++++||+++|+++..|..|+|-.......+..+-       -|
T Consensus       121 sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lG  192 (390)
T KOG3914|consen  121 SVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LG  192 (390)
T ss_pred             eEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-------cc
Confidence            444443   344555665555444 3455799999999999999999999999999998877666666663       68


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |+..|..++.-++ ..|++||.|+++++||
T Consensus       193 H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  193 HKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             cHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence            9999999998865 4599999999999997

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=6.9e-11  Score=87.50  Aligned_cols=146  Identities=13%  Similarity=0.217  Sum_probs=106.4

Q ss_pred             CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643           89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus        89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      -.+.|.++.|...++  ++..|...|.|...|++....+..         .+...+            -+...|+++..-
T Consensus       251 sksDVfAlQf~~s~n--Lv~~GcRngeI~~iDLR~rnqG~~---------~~a~rl------------yh~Ssvtslq~L  307 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDN--LVFNGCRNGEIFVIDLRCRNQGNG---------WCAQRL------------YHDSSVTSLQIL  307 (425)
T ss_pred             cchhHHHHHhcccCC--eeEecccCCcEEEEEeeecccCCC---------cceEEE------------EcCcchhhhhhh
Confidence            456689999998887  999999999999999986421111         111111            111236666655


Q ss_pred             C-CCCeEEEecCCCeEEEEecCCCcE---EEEeecCCcceEEE--EEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          169 P-QGGAIFSAAGDSCAYCWDVESSRI---KMVFKGHSDYLHCI--VARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       169 ~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~i--~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      . ++++|++.+.+|+|++||++.-++   ++++++|-+.-.-+  -..+....+++++.|...|||.+++|+++.+++.+
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            4 677899999999999999997666   88888886543332  34556788999999999999999999999998755


Q ss_pred             ccccccCcceeeeEEEEcC
Q 023643          243 KDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       243 ~~~~~~~~~~~v~~~~~~~  261 (279)
                      .    ......+.+++|+.
T Consensus       388 ~----s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  388 Y----SASEVDIPSVAFDS  402 (425)
T ss_pred             C----ccccccccceehhc
Confidence            4    34445677788764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.23  E-value=3e-10  Score=81.05  Aligned_cols=114  Identities=18%  Similarity=0.254  Sum_probs=81.3

Q ss_pred             ceeEEEcCCCC-eEEEecCCCeEEEEecCCCc-EEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      |.+++-+|..+ .+++|+.||.+-+||.++.. +...++.|..++..+-|+| ++..|++++.||.+--||..+ +.+. 
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~-  259 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS-  259 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE-
Confidence            67888888554 67788999999999999864 3445678999999999999 588999999999999999653 3333 


Q ss_pred             ecCCcc------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKD------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.....                  .-+......|+  .|+--|..|++|+.-+.|++++
T Consensus       260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence            111110                  00111122233  2444588999999999888864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.22  E-value=5.5e-09  Score=91.20  Aligned_cols=221  Identities=14%  Similarity=0.056  Sum_probs=138.7

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEE----eCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSY----SIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG  100 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  100 (279)
                      ...|.++.|.+    +...++.+..+|.|.+.    +.....                 .+.   ...-...|.+++|+|
T Consensus        75 ~~~ivs~~yl~----d~~~l~~~~~~Gdi~~~~~~~~~~~~~-----------------~E~---VG~vd~GI~a~~WSP  130 (928)
T PF04762_consen   75 NDKIVSFQYLA----DSESLCIALASGDIILVREDPDPDEDE-----------------IEI---VGSVDSGILAASWSP  130 (928)
T ss_pred             CCcEEEEEecc----CCCcEEEEECCceEEEEEccCCCCCce-----------------eEE---EEEEcCcEEEEEECC
Confidence            46799999999    78888899999999998    444321                 122   222356799999999


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCc--------------------ceeeeccCcccceEE-eecCCCC-CccccCCC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESK--------------------VPINLQGNHVKPVLD-LVNHQHK-GPWGALSP  158 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~  158 (279)
                      ++.  +|+....++.+.+-.-.-..-.+                    ....+.|...+.... +..+.-. ..-.....
T Consensus       131 D~E--lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~  208 (928)
T PF04762_consen  131 DEE--LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW  208 (928)
T ss_pred             CcC--EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc
Confidence            998  89888888888776532110000                    000111111110000 0000000 00000112


Q ss_pred             CCCceeEEEcCCCCeEEEecC---C---CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC---CCeEEEEe
Q 023643          159 VPENNAIAVDPQGGAIFSAAG---D---SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---DGTARIWD  229 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd  229 (279)
                      ...-..|+|-.||.++++.+-   .   ..+++|+-+ |.+..+-+.-.+--.+++|.|.|++||+...   ...|.+|.
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            234568999999999998764   2   579999955 7665555544444467899999999998764   34577777


Q ss_pred             CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                       ++|..-..+....    ......|..+.|++|+..||..-.|. |.+|
T Consensus       288 -rNGLrhgeF~l~~----~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW  330 (928)
T PF04762_consen  288 -RNGLRHGEFTLRF----DPEEEKVIELAWNSDSEILAVWLEDR-VQLW  330 (928)
T ss_pred             -cCCcEeeeEecCC----CCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence             5666555554321    23456789999999999999977655 8887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=5.5e-10  Score=90.58  Aligned_cols=216  Identities=15%  Similarity=0.200  Sum_probs=142.4

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccc-cCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLG-LSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      .....++.|+.    ...++|+|+.||.+++..+.+........ +.....     ...-+++.||.+.|.-+.|+.+.+
T Consensus        14 nvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~sn-----LsmNQtLeGH~~sV~vvTWNe~~Q   84 (1189)
T KOG2041|consen   14 NVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASN-----LSMNQTLEGHNASVMVVTWNENNQ   84 (1189)
T ss_pred             CceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccc-----cchhhhhccCcceEEEEEeccccc
Confidence            35678999999    89999999999999999998753222111 000000     233457889999999999999887


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        .|.|...+|.|.+|-+-.+   .....+..+..+.+                    |.+++|+.+|..+.....||.|
T Consensus        85 --KLTtSDt~GlIiVWmlykg---sW~EEMiNnRnKSv--------------------V~SmsWn~dG~kIcIvYeDGav  139 (1189)
T KOG2041|consen   85 --KLTTSDTSGLIIVWMLYKG---SWCEEMINNRNKSV--------------------VVSMSWNLDGTKICIVYEDGAV  139 (1189)
T ss_pred             --cccccCCCceEEEEeeecc---cHHHHHhhCcCccE--------------------EEEEEEcCCCcEEEEEEccCCE
Confidence              8999999999999997432   22222223333333                    7899999999999999999998


Q ss_pred             EEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc----cccccCcceeeeEEE
Q 023643          184 YCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK----DKQLKGVISCVSCIT  258 (279)
Q Consensus       184 ~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~  258 (279)
                      .+=.++..+.-. .+++  .....+.|++|.+.++.+-.+|.+.+||.... ....+....    ...+......|..+.
T Consensus       140 IVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~  216 (1189)
T KOG2041|consen  140 IVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIE  216 (1189)
T ss_pred             EEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCcccccee
Confidence            877665332211 2222  22447889999999999999999999996532 111111100    000112222355555


Q ss_pred             Ec--------CCCCEEEEEcCcceEEe
Q 023643          259 LD--------ASESWLVRVRATNYVIL  277 (279)
Q Consensus       259 ~~--------~~~~~l~~~~~d~~i~~  277 (279)
                      |.        |+.+.|+.+-..|.+.+
T Consensus       217 w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  217 WNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             eccCccccCCCCCCEEEEEEcCceehh
Confidence            53        46778888877776543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=1.5e-10  Score=91.19  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=100.8

Q ss_pred             CCceeeecccccc-----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYR-----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      |.+|++|.++...     ..+..++..|+.+|..+.|-.    +-+.+++  .||-|.+||.--                
T Consensus       756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~----~lr~i~S--cD~giHlWDPFi----------------  813 (1034)
T KOG4190|consen  756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA----DLRSIAS--CDGGIHLWDPFI----------------  813 (1034)
T ss_pred             CceEEEEEeccccCccccceeeeEhhhccCcccceeeee----ccceeee--ccCcceeecccc----------------
Confidence            7899999976432     234557788999999999998    6666655  588899999876                


Q ss_pred             eeeccccccccC--CccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           77 LLGIEPDGFLHG--HDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        77 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                         ++++..+..  ..+.+..+.-.|+-..+.++ -++...+|+++|.+..   .....++..         +       
T Consensus       814 ---gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc---e~~~E~kVc---------n-------  871 (1034)
T KOG4190|consen  814 ---GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC---EWTCELKVC---------N-------  871 (1034)
T ss_pred             ---cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc---cceeeEEec---------c-------
Confidence               344443321  22334444444442212444 4478899999997643   222221110         0       


Q ss_pred             ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643          154 GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  198 (279)
                       ...+..-+++++..+.|++++++-.+|+|.+.|.++|+.+...+
T Consensus       872 -a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  872 -APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             -CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence             01112236899999999999999999999999999999887654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=9.8e-10  Score=84.30  Aligned_cols=222  Identities=12%  Similarity=0.173  Sum_probs=148.8

Q ss_pred             CCCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCccc-----------cc
Q 023643            1 MCGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKL-----------PL   67 (279)
Q Consensus         1 ~dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~-----------~~   67 (279)
                      +||.++.|-... .-.+.++.+..|...|.+++.+-    ++-++.+++. |..++++|+..-....           ..
T Consensus        28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w  103 (558)
T KOG0882|consen   28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW  103 (558)
T ss_pred             cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE
Confidence            589999998655 33455677788999999999998    8999999877 9999999987643221           00


Q ss_pred             ccCCc-------------ccceeee----ccccccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC-CccCc
Q 023643           68 GLSNS-------------KVQQLLG----IEPDGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE-FTESK  128 (279)
Q Consensus        68 ~~~~~-------------~~~~~~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~-~~~~~  128 (279)
                      ...+.             ..-.+..    ..+...+ .-|..+|..+.+.|.+.  .+++....|.|.-|.... .+...
T Consensus       104 v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qfPr  181 (558)
T KOG0882|consen  104 VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSIDISGMVEYWSAEGPFQFPR  181 (558)
T ss_pred             ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeeccccceeEeecCCCcccCcc
Confidence            00111             0000110    2222333 34899999999999998  899999999999999752 11111


Q ss_pred             ceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee----------
Q 023643          129 VPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK----------  198 (279)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------  198 (279)
                      ......-.+...++.+...           .....++.|+|++..+.+-..|..|++++..+++.++.+.          
T Consensus       182 ~~l~~~~K~eTdLy~f~K~-----------Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  182 TNLNFELKHETDLYGFPKA-----------KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             ccccccccccchhhccccc-----------ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence            1111111111112111111           1135799999999999999999999999999887665532          


Q ss_pred             ----------------------cCC-cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          199 ----------------------GHS-DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       199 ----------------------~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                                            .|. ..-+.+.|...+++|+-|+.=| |+|.++.++...+.+-
T Consensus       251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                  111 1234567888899999998777 8999999998887764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.17  E-value=1.5e-10  Score=59.82  Aligned_cols=39  Identities=36%  Similarity=0.675  Sum_probs=37.1

Q ss_pred             CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       191 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      ++++.++++|.+.|++|+|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=4.6e-08  Score=78.60  Aligned_cols=181  Identities=10%  Similarity=0.040  Sum_probs=107.8

Q ss_pred             ceEEEEECCCCCCCCCE-EEEecC---CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           27 TVFRTVWGPSKDGSPDT-IVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      ......|+|    +++. ++..+.   +..|.++|+.+++                   ..... ...+......|+|++
T Consensus       189 ~~~~p~wSp----DG~~~i~y~s~~~~~~~Iyv~dl~tg~-------------------~~~lt-~~~g~~~~~~~SPDG  244 (419)
T PRK04043        189 LNIFPKWAN----KEQTAFYYTSYGERKPTLYKYNLYTGK-------------------KEKIA-SSQGMLVVSDVSKDG  244 (419)
T ss_pred             CeEeEEECC----CCCcEEEEEEccCCCCEEEEEECCCCc-------------------EEEEe-cCCCcEEeeEECCCC
Confidence            677899999    8874 554333   3568888887732                   22211 234445667899999


Q ss_pred             CceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-
Q 023643          103 EDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-  179 (279)
Q Consensus       103 ~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  179 (279)
                      + .++++.+.++  .|.++++....    ...+.....                      ......|+|||+.|+..+. 
T Consensus       245 ~-~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~----------------------~d~~p~~SPDG~~I~F~Sdr  297 (419)
T PRK04043        245 S-KLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPG----------------------IDVNGNFVEDDKRIVFVSDR  297 (419)
T ss_pred             C-EEEEEEccCCCcEEEEEECCCCc----EEEcccCCC----------------------ccCccEECCCCCEEEEEECC
Confidence            7 3445555454  45555654321    111111000                      0134579999997766553 


Q ss_pred             CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---------CeEEEEeCCCCceEEEecCCcccccc
Q 023643          180 DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---------GTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       180 d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      .+  .|++.|+.+++..+.... ...  ...|+|+|++|+..+..         ..|.+.|+.++... .+..       
T Consensus       298 ~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~-------  366 (419)
T PRK04043        298 LGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA-------  366 (419)
T ss_pred             CCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC-------
Confidence            22  688889988776543321 111  24899999988776543         36888898877643 3321       


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcC
Q 023643          249 GVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      .  .......|+|||+.|+..+.
T Consensus       367 ~--~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        367 N--GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             C--CCcCCeEECCCCCEEEEEEc
Confidence            1  12235789999998776543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.16  E-value=2.7e-08  Score=72.39  Aligned_cols=180  Identities=12%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCCC--
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNE--  103 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--  103 (279)
                      .=..++|+|    |+.+||.+.+.|+|+++|+...+.   +..           .+...+. .-...|..+.|.+...  
T Consensus        45 QWRkl~WSp----D~tlLa~a~S~G~i~vfdl~g~~l---f~I-----------~p~~~~~~d~~~Aiagl~Fl~~~~s~  106 (282)
T PF15492_consen   45 QWRKLAWSP----DCTLLAYAESTGTIRVFDLMGSEL---FVI-----------PPAMSFPGDLSDAIAGLIFLEYKKSA  106 (282)
T ss_pred             hheEEEECC----CCcEEEEEcCCCeEEEEeccccee---EEc-----------CcccccCCccccceeeeEeecccccc
Confidence            346789999    999999999999999999985321   111           1111111 1235677777765431  


Q ss_pred             --ceEEEEeeCCCcEEEeecCCC--ccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          104 --DALLLSCGDDGRICGWRWKEF--TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       104 --~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                        ...|+.-..+|.++=|-+...  +..+....+.         +....          ...|.++.++|..++|++|+.
T Consensus       107 ~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs---------f~~~y----------p~Gi~~~vy~p~h~LLlVgG~  167 (282)
T PF15492_consen  107 QWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS---------FSSHY----------PHGINSAVYHPKHRLLLVGGC  167 (282)
T ss_pred             ccceeEEEEeccceeeeEEEEcccCCcceeeEEEE---------ecccC----------CCceeEEEEcCCCCEEEEecc
Confidence              024666667777776665321  1111111111         10000          013789999998888877754


Q ss_pred             C-----------CeEEEEecCCCcEEE-----------------------E---e---ecCCcceEEEEEcCCCcEEEEe
Q 023643          180 D-----------SCAYCWDVESSRIKM-----------------------V---F---KGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       180 d-----------~~i~i~d~~~~~~~~-----------------------~---~---~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                      .           .-+.-|.+-++.+-.                       .   +   ......|..|..||+|..|++.
T Consensus       168 ~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i  247 (282)
T PF15492_consen  168 EQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI  247 (282)
T ss_pred             CCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence            2           125556553321110                       0   0   1135678999999999999999


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCc
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVK  243 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~  243 (279)
                      ..+|.|.+|++.+-+....+...+
T Consensus       248 h~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  248 HFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             EcCCeEEEEecCcchhhcccchhh
Confidence            999999999999988888775443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.3e-10  Score=87.53  Aligned_cols=198  Identities=14%  Similarity=0.178  Sum_probs=130.3

Q ss_pred             CCceeeecccccccc-ceeeeeeccc---ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRKS-ILKEREILTR---TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~~-~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      ||.+.-.|+...... .+.....+..   ...+++..|.   +...+++|+.|-.+++||...-.....-.        +
T Consensus       254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~---nt~~faVgG~dqf~RvYD~R~~~~e~~n~--------~  322 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR---NTNEFAVGGSDQFARVYDQRRIDKEENNG--------V  322 (559)
T ss_pred             ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC---CccccccCChhhhhhhhcccchhhccccc--------h
Confidence            455555555443322 1223333334   6788899994   67799999999999999987632211100        0


Q ss_pred             ee-ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC----------cceeeeccCcccceEEeec
Q 023643           78 LG-IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES----------KVPINLQGNHVKPVLDLVN  146 (279)
Q Consensus        78 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  146 (279)
                      +. .-+-.......-.|++++|+.++.  -|+++..|--|+++.-+.....          .....+++|...       
T Consensus       323 ~~~f~p~hl~~d~~v~ITgl~Ysh~~s--ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-------  393 (559)
T KOG1334|consen  323 LDKFCPHHLVEDDPVNITGLVYSHDGS--ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-------  393 (559)
T ss_pred             hhhcCCccccccCcccceeEEecCCcc--ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------
Confidence            00 001111112234589999997776  6777778888999954322110          001112222111       


Q ss_pred             CCCCCccccCCCCCCceeEEE-cCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          147 HQHKGPWGALSPVPENNAIAV-DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                                   ..|..+.| -|...++++|+.-|.|.||+-.+++.++-+++...-|.|+.=+|--..||+++.|..|
T Consensus       394 -------------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DV  460 (559)
T KOG1334|consen  394 -------------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDV  460 (559)
T ss_pred             -------------cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccce
Confidence                         12556664 5778899999999999999999999999998877799999999988999999999999


Q ss_pred             EEEeCCC
Q 023643          226 RIWDCKS  232 (279)
Q Consensus       226 ~vwd~~~  232 (279)
                      +||-..+
T Consensus       461 KIWTP~~  467 (559)
T KOG1334|consen  461 KIWTPLT  467 (559)
T ss_pred             eeecCCc
Confidence            9998744

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.13  E-value=4.2e-08  Score=85.83  Aligned_cols=230  Identities=13%  Similarity=0.165  Sum_probs=134.4

Q ss_pred             CCceeee----ccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc------------
Q 023643            2 CGDSTNW----DEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL------------   65 (279)
Q Consensus         2 dG~v~iw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------   65 (279)
                      +|.|-+.    +......+++   ..-...|.+++|||    |+.+||..+.++++.+..-.- +...            
T Consensus        96 ~Gdi~~~~~~~~~~~~~~E~V---G~vd~GI~a~~WSP----D~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~  167 (928)
T PF04762_consen   96 SGDIILVREDPDPDEDEIEIV---GSVDSGILAASWSP----DEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGES  167 (928)
T ss_pred             CceEEEEEccCCCCCceeEEE---EEEcCcEEEEEECC----CcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCC
Confidence            6777777    5444333333   33458999999999    999999999999987765321 1000            


Q ss_pred             ---ccccCCccc------ceeee---ccc------cccccCCccCeEEEEecCCCCceEEEEeeC---C---CcEEEeec
Q 023643           66 ---PLGLSNSKV------QQLLG---IEP------DGFLHGHDGPAYDVKFYGGNEDALLLSCGD---D---GRICGWRW  121 (279)
Q Consensus        66 ---~~~~~~~~~------~~~~~---~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iw~~  121 (279)
                         ..++.....      .+...   .++      ...+. +...-..|+|-.||.  +||+.+.   .   ..+|||+-
T Consensus       168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~R  244 (928)
T PF04762_consen  168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE--YFAVSSVEPETGSRRVIRVYSR  244 (928)
T ss_pred             ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc--EEEEEEEEcCCCceeEEEEECC
Confidence               111100000      00000   000      11122 344566899999998  8888764   2   47889883


Q ss_pred             CCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC---CCeEEEEecCCCcEEEEee
Q 023643          122 KEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG---DSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~  198 (279)
                      + +   . .... .+....                    --.+++|-|.|+++++...   ...|.+|. ++|..-..|.
T Consensus       245 e-G---~-L~st-SE~v~g--------------------Le~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~  297 (928)
T PF04762_consen  245 E-G---E-LQST-SEPVDG--------------------LEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT  297 (928)
T ss_pred             C-c---e-EEec-cccCCC--------------------ccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence            2 1   1 0000 000000                    0257899999999988754   35577776 4455444443


Q ss_pred             c----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce--EEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcC
Q 023643          199 G----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC--IKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRA  271 (279)
Q Consensus       199 ~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  271 (279)
                      .    ....|..++|++++..|+..-.|. |.+|-..+-..  .+.+..       .....+..+.|+|. ...|...+.
T Consensus       298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~-------~~~~~~~~~~Wdpe~p~~L~v~t~  369 (928)
T PF04762_consen  298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF-------SSSESVNFVKWDPEKPLRLHVLTS  369 (928)
T ss_pred             cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc-------cCCCCCCceEECCCCCCEEEEEec
Confidence            2    456899999999999999977666 99998877542  223321       11223445889985 344555555


Q ss_pred             cceEEe
Q 023643          272 TNYVIL  277 (279)
Q Consensus       272 d~~i~~  277 (279)
                      +|.+..
T Consensus       370 ~g~~~~  375 (928)
T PF04762_consen  370 NGQYEI  375 (928)
T ss_pred             CCcEEE
Confidence            455543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.11  E-value=3.5e-07  Score=68.67  Aligned_cols=181  Identities=17%  Similarity=0.199  Sum_probs=110.5

Q ss_pred             eEEEEEC-CCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc--cC-CccCeEEEEecCCCC
Q 023643           28 VFRTVWG-PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL--HG-HDGPAYDVKFYGGNE  103 (279)
Q Consensus        28 v~~~~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~~~~~~~~~  103 (279)
                      ...+++. +    ++.++ .+... .+.++|+.+++.                 +.+...  .. .....+.+++.|++.
T Consensus        42 ~~G~~~~~~----~g~l~-v~~~~-~~~~~d~~~g~~-----------------~~~~~~~~~~~~~~~~ND~~vd~~G~   98 (246)
T PF08450_consen   42 PNGMAFDRP----DGRLY-VADSG-GIAVVDPDTGKV-----------------TVLADLPDGGVPFNRPNDVAVDPDGN   98 (246)
T ss_dssp             EEEEEEECT----TSEEE-EEETT-CEEEEETTTTEE-----------------EEEEEEETTCSCTEEEEEEEE-TTS-
T ss_pred             CceEEEEcc----CCEEE-EEEcC-ceEEEecCCCcE-----------------EEEeeccCCCcccCCCceEEEcCCCC
Confidence            6677777 5    55544 44444 456668877421                 111222  11 345688999999997


Q ss_pred             ceEEEEeeCC--------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643          104 DALLLSCGDD--------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus       104 ~~~l~s~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                        +.++....        |.|..++.. .   .......+ -                      ...+.|+|+|+++.|+
T Consensus        99 --ly~t~~~~~~~~~~~~g~v~~~~~~-~---~~~~~~~~-~----------------------~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   99 --LYVTDSGGGGASGIDPGSVYRIDPD-G---KVTVVADG-L----------------------GFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             --EEEEEECCBCTTCGGSEEEEEEETT-S---EEEEEEEE-E----------------------SSEEEEEEETTSSEEE
T ss_pred             --EEEEecCCCccccccccceEEECCC-C---eEEEEecC-c----------------------ccccceEECCcchhee
Confidence              66665543        345555543 1   11111111 0                      0147899999999776


Q ss_pred             -EecCCCeEEEEecCCCc--E--EEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc
Q 023643          176 -SAAGDSCAYCWDVESSR--I--KMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       176 -~~~~d~~i~i~d~~~~~--~--~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                       +-+..+.|..+++....  .  .+.+   ....+..-.+++..+|++.++....+.|.++|.+ |+.+..+..      
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------  222 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL------  222 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-------
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC------
Confidence             55678889999986322  1  2222   2222357889999999998888889999999977 998888853      


Q ss_pred             cCcceeeeEEEEc-CCCCEEEEE
Q 023643          248 KGVISCVSCITLD-ASESWLVRV  269 (279)
Q Consensus       248 ~~~~~~v~~~~~~-~~~~~l~~~  269 (279)
                        ....+++++|. ++.+.|+..
T Consensus       223 --p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  223 --PVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             --SSSSEEEEEEESTTSSEEEEE
T ss_pred             --CCCCEEEEEEECCCCCEEEEE
Confidence              23368999994 665655544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=4.8e-10  Score=91.08  Aligned_cols=217  Identities=17%  Similarity=0.160  Sum_probs=140.5

Q ss_pred             eeecccccc-ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643            6 TNWDEDAYR-KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG   84 (279)
Q Consensus         6 ~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (279)
                      .+|++.... ..+...+.+|...|+.+-|.|.   ....+|+++.|-.+..||+++.                  ..++.
T Consensus        94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q---~pdVlatcsvdt~vh~wd~rSp------------------~~p~y  152 (1081)
T KOG0309|consen   94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQ---HPDVLATCSVDTYVHAWDMRSP------------------HRPFY  152 (1081)
T ss_pred             hhhhhhcCCccceEEEEecCccceeccccCCC---CCcceeeccccccceeeeccCC------------------Cccee
Confidence            467754333 2333456789999999999994   8899999999999999999985                  45556


Q ss_pred             cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      .+..-......++|+-...  .+.+.+...-|++||++.+..  .....++ +..                     .|+.
T Consensus       153 s~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~--pl~s~K~-~vs---------------------~vn~  206 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGST--PLCSLKG-HVS---------------------SVNS  206 (1081)
T ss_pred             eeecccccCceeeecccCc--chhhhccCCceEEEeccCCCc--ceEEecc-cce---------------------eeeh
Confidence            5555445577899998776  555566677899999875432  2223333 221                     1566


Q ss_pred             EEEcC-CCCeEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCC-------
Q 023643          165 IAVDP-QGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKS-------  232 (279)
Q Consensus       165 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~-------  232 (279)
                      ++|+. -...+.+.+.|++|++||-...  +..+... -..+|.--++-|-  |.++.---.+..+.+++.+.       
T Consensus       207 ~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~  285 (1081)
T KOG0309|consen  207 IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV  285 (1081)
T ss_pred             HHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc
Confidence            66664 2346888999999999998653  2223222 3345555555553  33332222233444444432       


Q ss_pred             ---CceEEEecCCccccccCcceeeeEEEEcCC----------CCEEEEEcCcceEEeC
Q 023643          233 ---GKCIKVIDPVKDKQLKGVISCVSCITLDAS----------ESWLVRVRATNYVILF  278 (279)
Q Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~~w  278 (279)
                         .++++++        .+|...|....|-..          .-.|+|=+.|..+++|
T Consensus       286 ~~~~~pVh~F--------~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  286 FDLNTPVHTF--------VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             ccCCcceeee--------cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence               3456666        688777766666432          2368999999999999

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1.9e-08  Score=79.39  Aligned_cols=119  Identities=16%  Similarity=0.269  Sum_probs=85.8

Q ss_pred             CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643           89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus        89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      ..++|.++.|+|++.+.-++-|-+=..+.|+|++..    .+..+..           .             .=+++-|+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~df~e-----------g-------------pRN~~~fn  320 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFDFPE-----------G-------------PRNTAFFN  320 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEeCCC-----------C-------------CccceEEC
Confidence            578999999999998222333445667889997531    1111111           1             12688999


Q ss_pred             CCCCeEEEecC---CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC------CCeEEEEeCCCCceEEE
Q 023643          169 PQGGAIFSAAG---DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE------DGTARIWDCKSGKCIKV  238 (279)
Q Consensus       169 ~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~  238 (279)
                      |.|++++.++-   -|.|-+||..+.+++..++...  -+-+.|+|||.+++++..      |+.++||+. +|..+..
T Consensus       321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~  396 (566)
T KOG2315|consen  321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE  396 (566)
T ss_pred             CCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh
Confidence            99998877664   4889999999988888887543  345789999999999874      788999996 5655544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=1.5e-09  Score=88.38  Aligned_cols=187  Identities=16%  Similarity=0.267  Sum_probs=127.2

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      .|-...|+|...  ..+-++..+...-.+|++.....                ......+.+|...|+.+.|+|+.. ..
T Consensus        69 ~vad~qws~h~a--~~~wiVsts~qkaiiwnlA~ss~----------------~aIef~lhghsraitd~n~~~q~p-dV  129 (1081)
T KOG0309|consen   69 QVADVQWSPHPA--KPYWIVSTSNQKAIIWNLAKSSS----------------NAIEFVLHGHSRAITDINFNPQHP-DV  129 (1081)
T ss_pred             hhcceecccCCC--CceeEEecCcchhhhhhhhcCCc----------------cceEEEEecCccceeccccCCCCC-cc
Confidence            466778888533  23444444445566899875321                222335678999999999999877 59


Q ss_pred             EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643          107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  186 (279)
                      +++++.|-.+..||++....             +++....-..           +...++|+.....+.+.++...|.+|
T Consensus       130 latcsvdt~vh~wd~rSp~~-------------p~ys~~~w~s-----------~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  130 LATCSVDTYVHAWDMRSPHR-------------PFYSTSSWRS-----------AASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eeeccccccceeeeccCCCc-------------ceeeeecccc-----------cCceeeecccCcchhhhccCCceEEE
Confidence            99999999999999875321             1111111111           24678999766666667778889999


Q ss_pred             ecCCC-cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643          187 DVESS-RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       187 d~~~~-~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                      |++.+ .++..+++|...|..++|..- ...+.+++.|++|+.||...........       .....+|+.-++-|-|
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-------vtt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-------VTTNFPIWRGRYLPFG  257 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-------ccccCcceeccccccC
Confidence            99975 688899999999999998763 5678899999999999986533222111       1233456666666643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=8.1e-09  Score=84.78  Aligned_cols=176  Identities=15%  Similarity=0.162  Sum_probs=119.4

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..++|++++.      ..|+-|+.+|.|++.+.+.                    .+ .+...|...      ..+|.  
T Consensus        40 D~is~~av~~------~~~~~GtH~g~v~~~~~~~--------------------~~-~~~~~~s~~------~~~Ge--   84 (846)
T KOG2066|consen   40 DAISCCAVHD------KFFALGTHRGAVYLTTCQG--------------------NP-KTNFDHSSS------ILEGE--   84 (846)
T ss_pred             hHHHHHHhhc------ceeeeccccceEEEEecCC--------------------cc-ccccccccc------ccCCc--
Confidence            4566666665      8999999999999999884                    33 334445543      34555  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC-----CCeEEEecCC
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ-----GGAIFSAAGD  180 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d  180 (279)
                      +++||+.||+|.|-.+-+... .....++.                         ++.+++++|+     .+.+++|+.-
T Consensus        85 y~asCS~DGkv~I~sl~~~~~-~~~~df~r-------------------------piksial~Pd~~~~~sk~fv~GG~a  138 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDE-ITQYDFKR-------------------------PIKSIALHPDFSRQQSKQFVSGGMA  138 (846)
T ss_pred             eEEEecCCCcEEEeeccCCcc-ceeEecCC-------------------------cceeEEeccchhhhhhhheeecCcc
Confidence            999999999999988754311 11111111                         3689999997     4578999888


Q ss_pred             CeEEEEecCC---CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          181 SCAYCWDVES---SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       181 ~~i~i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      | +.++.-+=   ...+ .+....++|.++.|.  |+++|-++.+| |+|||+.+++.+..++++...  ......-..+
T Consensus       139 g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~--~R~e~fpphl  211 (846)
T KOG2066|consen  139 G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS--VRPELFPPHL  211 (846)
T ss_pred             e-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCC--CCcccCCCce
Confidence            8 77765321   1122 355567899999996  89999999888 999999999988888765421  1122233456


Q ss_pred             EEcCCCCEEEEEc
Q 023643          258 TLDASESWLVRVR  270 (279)
Q Consensus       258 ~~~~~~~~l~~~~  270 (279)
                      .|.++.+ |+.|=
T Consensus       212 ~W~~~~~-LVIGW  223 (846)
T KOG2066|consen  212 HWQDEDR-LVIGW  223 (846)
T ss_pred             EecCCCe-EEEec
Confidence            7776544 44443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.06  E-value=4.2e-10  Score=58.13  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=35.2

Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR  120 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~  120 (279)
                      +++..+.+|.++|++++|+|++.  +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~--~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN--FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS--EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc--cceeeCCCCEEEEEC
Confidence            45678899999999999999987  999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=5.6e-10  Score=82.82  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=102.1

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC-CCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG-GNE  103 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~  103 (279)
                      .+.|.++.|.-    .++++..|+.+|.|..+|++....-.              +.+...+ -|...|+++.... +++
T Consensus       252 ksDVfAlQf~~----s~nLv~~GcRngeI~~iDLR~rnqG~--------------~~~a~rl-yh~Ssvtslq~Lq~s~q  312 (425)
T KOG2695|consen  252 KSDVFALQFAG----SDNLVFNGCRNGEIFVIDLRCRNQGN--------------GWCAQRL-YHDSSVTSLQILQFSQQ  312 (425)
T ss_pred             chhHHHHHhcc----cCCeeEecccCCcEEEEEeeecccCC--------------CcceEEE-EcCcchhhhhhhccccc
Confidence            46788888887    78999999999999999998741100              2222333 3888899988877 555


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        +|++.+.+|.|++||++..+....+..+.+|....-                    -.-+.+++.+..+++++.|...
T Consensus       313 --~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--------------------~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  313 --KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--------------------YLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             --eEeeccCcCceeEeeehhhhcccceeeeeccccccc--------------------ccccccccccceEEEccCeeEE
Confidence              999999999999999997766666777777543211                    1223456677788899999999


Q ss_pred             EEEecCCCcEEEEeecC
Q 023643          184 YCWDVESSRIKMVFKGH  200 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~  200 (279)
                      +||.++++.++.++...
T Consensus       371 RiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             EEEecccCceeeccCCC
Confidence            99999999999988644

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=1.3e-07  Score=84.38  Aligned_cols=192  Identities=9%  Similarity=0.118  Sum_probs=113.0

Q ss_pred             EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643           29 FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL  108 (279)
Q Consensus        29 ~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  108 (279)
                      ..++++|.   ++.++++.+.++.|++||..++.... +.  .........+..  .....-.....|+++|+++ .+++
T Consensus       686 ~gVa~dp~---~g~LyVad~~~~~I~v~d~~~g~v~~-~~--G~G~~~~~~g~~--~~~~~~~~P~GIavspdG~-~LYV  756 (1057)
T PLN02919        686 WDVCFEPV---NEKVYIAMAGQHQIWEYNISDGVTRV-FS--GDGYERNLNGSS--GTSTSFAQPSGISLSPDLK-ELYI  756 (1057)
T ss_pred             eEEEEecC---CCeEEEEECCCCeEEEEECCCCeEEE-Ee--cCCccccCCCCc--cccccccCccEEEEeCCCC-EEEE
Confidence            57899983   56677777888999999987643210 00  000000000000  0001113457799999986 3555


Q ss_pred             EeeCCCcEEEeecCCCccCcceeeeccCcc--cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643          109 SCGDDGRICGWRWKEFTESKVPINLQGNHV--KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       109 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  186 (279)
                      +-+.++.|++||+++...   .....+...  .....+......+.   .........++++++|..+++-..++.|++|
T Consensus       757 ADs~n~~Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~---~~~l~~P~Gvavd~dG~LYVADs~N~rIrvi  830 (1057)
T PLN02919        757 ADSESSSIRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGS---EVLLQHPLGVLCAKDGQIYVADSYNHKIKKL  830 (1057)
T ss_pred             EECCCCeEEEEECCCCcE---EEEEecccccCcccccccCCCCchh---hhhccCCceeeEeCCCcEEEEECCCCEEEEE
Confidence            667789999999864321   110000000  00000000000000   0001123688999999988888889999999


Q ss_pred             ecCCCcEEEEee-------------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          187 DVESSRIKMVFK-------------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       187 d~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      |..++.......             +.-.....|+++++|+.+++-+.++.|++||+.+++.
T Consensus       831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            998776553321             1113567899999999999999999999999988764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.04  E-value=8.8e-07  Score=64.73  Aligned_cols=209  Identities=10%  Similarity=-0.007  Sum_probs=121.4

Q ss_pred             EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEe
Q 023643           31 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC  110 (279)
Q Consensus        31 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  110 (279)
                      ++.++    +|++||+. .|..|.|-..+..-...            . +++ ..-+.....=..++|+|++.  +||.+
T Consensus         3 ~~~~~----~Gk~lAi~-qd~~iEiRsa~Ddf~si------------~-~kc-qVpkD~~PQWRkl~WSpD~t--lLa~a   61 (282)
T PF15492_consen    3 LALSS----DGKLLAIL-QDQCIEIRSAKDDFSSI------------I-GKC-QVPKDPNPQWRKLAWSPDCT--LLAYA   61 (282)
T ss_pred             eeecC----CCcEEEEE-eccEEEEEeccCCchhe------------e-EEE-ecCCCCCchheEEEECCCCc--EEEEE
Confidence            45556    88888775 45567666555421000            0 111 11122222345799999998  99999


Q ss_pred             eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC------CCeEEEecCCCeEE
Q 023643          111 GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ------GGAIFSAAGDSCAY  184 (279)
Q Consensus       111 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~  184 (279)
                      ...|+|+++|+...    ...........+               .....+|..+.|-+.      ...|++-..+|.++
T Consensus        62 ~S~G~i~vfdl~g~----~lf~I~p~~~~~---------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   62 ESTGTIRVFDLMGS----ELFVIPPAMSFP---------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             cCCCeEEEEecccc----eeEEcCcccccC---------------CccccceeeeEeeccccccccceeEEEEeccceee
Confidence            99999999997521    111111111000               000113455555432      12566667788887


Q ss_pred             EEecCC-----CcEEEEeec---CCcceEEEEEcCCCcEEEEecC-CC----------eEEEEeCCCCceEEEecCCcc-
Q 023643          185 CWDVES-----SRIKMVFKG---HSDYLHCIVARNSTNQIVTGSE-DG----------TARIWDCKSGKCIKVIDPVKD-  244 (279)
Q Consensus       185 i~d~~~-----~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~-d~----------~i~vwd~~~~~~~~~~~~~~~-  244 (279)
                      -|-+..     .+.-++|..   +...|.++.++|..++|+.|+. ..          -+..|.+-++.+-...-.... 
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            776532     233344432   4678999999998888777653 11          266777655433222111000 


Q ss_pred             ----------------c----cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          245 ----------------K----QLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       245 ----------------~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                                      .    ........|..|..||||..||+...+|.|.+|+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence                            0    0012346789999999999999999999999996

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=4.3e-08  Score=76.16  Aligned_cols=122  Identities=13%  Similarity=0.034  Sum_probs=91.0

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCC-cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDG-SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      +|.+.|.-..+..    +++-++.|..|| .+-|+|..++                    .+..+...-+.|.++..+|+
T Consensus       357 ~~~~~VrY~r~~~----~~e~~vigt~dgD~l~iyd~~~~--------------------e~kr~e~~lg~I~av~vs~d  412 (668)
T COG4946         357 GKKGGVRYRRIQV----DPEGDVIGTNDGDKLGIYDKDGG--------------------EVKRIEKDLGNIEAVKVSPD  412 (668)
T ss_pred             CCCCceEEEEEcc----CCcceEEeccCCceEEEEecCCc--------------------eEEEeeCCccceEEEEEcCC
Confidence            4667788888887    778899999999 8999999973                    23445556678999999999


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS  181 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  181 (279)
                      |+  +++.+.....|-+.|++++.....    .....                     +-|+.+.|+|+++++|-+--+|
T Consensus       413 GK--~~vvaNdr~el~vididngnv~~i----dkS~~---------------------~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         413 GK--KVVVANDRFELWVIDIDNGNVRLI----DKSEY---------------------GLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             Cc--EEEEEcCceEEEEEEecCCCeeEe----ccccc---------------------ceeEEEEEcCCceeEEEecCcc
Confidence            98  899988888888888876422111    11010                     1278999999999998876664


Q ss_pred             ----eEEEEecCCCcEEE
Q 023643          182 ----CAYCWDVESSRIKM  195 (279)
Q Consensus       182 ----~i~i~d~~~~~~~~  195 (279)
                          .|+++|+..++...
T Consensus       466 y~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         466 YYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             eeeeeEEEEecCCCeEEE
Confidence                68999998766544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.1e-07  Score=78.93  Aligned_cols=201  Identities=10%  Similarity=0.214  Sum_probs=124.4

Q ss_pred             EECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccC-eEEEEecCCCCceEEEEe
Q 023643           32 VWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGP-AYDVKFYGGNEDALLLSC  110 (279)
Q Consensus        32 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~  110 (279)
                      +|++    .+..+|.|+.+|.|.+.+-.                    .+.++.++.+... |..+ +.-++. ++|++.
T Consensus        30 c~~s----~~~~vvigt~~G~V~~Ln~s--------------------~~~~~~fqa~~~siv~~L-~~~~~~-~~L~sv   83 (933)
T KOG2114|consen   30 CCSS----STGSVVIGTADGRVVILNSS--------------------FQLIRGFQAYEQSIVQFL-YILNKQ-NFLFSV   83 (933)
T ss_pred             EEcC----CCceEEEeeccccEEEeccc--------------------ceeeehheecchhhhhHh-hcccCc-eEEEEE
Confidence            5667    78899999999998777755                    3455677777766 4444 343443 388888


Q ss_pred             eCCCc-----EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          111 GDDGR-----ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       111 ~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      +.|+.     +++|+++.........-+..   -.+....++...         .++.+++.+.+-+.+++|-.+|.|..
T Consensus        84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~---~ri~~~~np~~~---------~p~s~l~Vs~~l~~Iv~Gf~nG~V~~  151 (933)
T KOG2114|consen   84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYE---HRIFTIKNPTNP---------SPASSLAVSEDLKTIVCGFTNGLVIC  151 (933)
T ss_pred             eecCCCCceEEEEecccccCCCCCcceeee---eeeeccCCCCCC---------CcceEEEEEccccEEEEEecCcEEEE
Confidence            87764     89999975422211110000   011111111111         23689999999899999999999999


Q ss_pred             EecCC----CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce-EEEecCCccccccCcceeeeEEEEc
Q 023643          186 WDVES----SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC-IKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       186 ~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      +.-+-    +....-......+|+.+++..++..++-...-..|.+|.+....+ ...+        ..|...+.|..|+
T Consensus       152 ~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l--------d~~G~~lnCss~~  223 (933)
T KOG2114|consen  152 YKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVL--------DNNGISLNCSSFS  223 (933)
T ss_pred             EcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeee--------ccCCccceeeecC
Confidence            85321    111111112357899999998887744444566799999873332 3334        5677788999998


Q ss_pred             CCCCEEEEEcCcceEEeCC
Q 023643          261 ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       261 ~~~~~l~~~~~d~~i~~wd  279 (279)
                      +....+++++.. .+.+||
T Consensus       224 ~~t~qfIca~~e-~l~fY~  241 (933)
T KOG2114|consen  224 DGTYQFICAGSE-FLYFYD  241 (933)
T ss_pred             CCCccEEEecCc-eEEEEc
Confidence            765545555443 355543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=1.1e-06  Score=68.26  Aligned_cols=213  Identities=12%  Similarity=0.122  Sum_probs=122.8

Q ss_pred             CCceeeeccccccccceeeeeec-------ccceEEEEECCCCCCCCCEEEEec-C-CCcEEEEeCCCCCcccccccCCc
Q 023643            2 CGDSTNWDEDAYRKSILKEREIL-------TRTVFRTVWGPSKDGSPDTIVIAS-S-DGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      ++.|.+||.++.+.  +.++...       ...-..++++|    ||++|++.. . +..|.+.|+.+.+....+.....
T Consensus        76 ~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~----dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~  149 (352)
T TIGR02658        76 TDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTP----DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC  149 (352)
T ss_pred             CCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECC----CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC
Confidence            46789999888743  4444321       12234788999    899888766 4 78999999998764442221110


Q ss_pred             ccceee-----------eccccc---------------cccCCccCeEE-EEecC-CCCceEEEEeeCCCcEEEeecCCC
Q 023643           73 KVQQLL-----------GIEPDG---------------FLHGHDGPAYD-VKFYG-GNEDALLLSCGDDGRICGWRWKEF  124 (279)
Q Consensus        73 ~~~~~~-----------~~~~~~---------------~~~~h~~~v~~-~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~  124 (279)
                      . .-+.           .+....               .+..-..++.. -.|.+ ++.  ++..... |+|.+-|+...
T Consensus       150 ~-~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~  225 (352)
T TIGR02658       150 Y-HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSG  225 (352)
T ss_pred             c-EEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCC
Confidence            0 0000           000000               01000000000 02344 554  4444444 88888886432


Q ss_pred             ccCcceeeeccCcccceEEeec-CCCCCccccCCCCCCceeEEEcCCCCeEEEec----------CCCeEEEEecCCCcE
Q 023643          125 TESKVPINLQGNHVKPVLDLVN-HQHKGPWGALSPVPENNAIAVDPQGGAIFSAA----------GDSCAYCWDVESSRI  193 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~  193 (279)
                      .....          ..+.... ......|.    .....-++++|+++.+++..          ..+.|-++|..+++.
T Consensus       226 ~~~~~----------~~~~~~~~~~~~~~wr----P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       226 DAKFL----------PAIEAFTEAEKADGWR----PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cceec----------ceeeeccccccccccC----CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            11000          0000000 00000000    01233489999999888843          225799999999999


Q ss_pred             EEEeecCCcceEEEEEcCCCc-EEEEec-CCCeEEEEeCCCCceEEEe
Q 023643          194 KMVFKGHSDYLHCIVARNSTN-QIVTGS-EDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       194 ~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~vwd~~~~~~~~~~  239 (279)
                      +..+.. ...+..++++||++ +|++.+ .++.|.++|..+++.+..+
T Consensus       292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            998874 45788999999998 777666 6888999999999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=1.1e-09  Score=91.05  Aligned_cols=187  Identities=12%  Similarity=0.090  Sum_probs=129.7

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      .+.+..|....+|++|+-    +.+.|+.|+..|.|+++++.+                   +........|..+|+-+.
T Consensus      1094 w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~s-------------------G~~e~s~ncH~SavT~ve 1150 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSS-------------------GSMEESVNCHQSAVTLVE 1150 (1516)
T ss_pred             chhhhccccceeeEEeec----CCceEEeeeccceEEEEEccC-------------------cccccccccccccccccc
Confidence            456677889999999999    899999999999999999998                   566677788999999999


Q ss_pred             ecCCCCceEEEEeeCCC-cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           98 FYGGNEDALLLSCGDDG-RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      -+.++. .+|.+++... -..+|++..  .......+..                          -.++.|+.....-+.
T Consensus      1151 Ps~dgs-~~Ltsss~S~PlsaLW~~~s--~~~~~Hsf~e--------------------------d~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1151 PSVDGS-TQLTSSSSSSPLSALWDASS--TGGPRHSFDE--------------------------DKAVKFSNSLQFRAL 1201 (1516)
T ss_pred             ccCCcc-eeeeeccccCchHHHhcccc--ccCccccccc--------------------------cceeehhhhHHHHHh
Confidence            888887 2344444443 456899753  2222222222                          357788876555566


Q ss_pred             ecCCCeEEEEecCCCcEEEEe-ec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcce
Q 023643          177 AAGDSCAYCWDVESSRIKMVF-KG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS  252 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~~~~~~~-~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  252 (279)
                      |+.-....+||+.++.++.++ .+   .+..-.+..|+|+..+++   .||  .+||++..+.++.+..        .+.
T Consensus      1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~--------ft~ 1268 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQ--------FTD 1268 (1516)
T ss_pred             cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhh--------hee
Confidence            666677899999998777663 21   122236778999888887   466  5699998877777632        221


Q ss_pred             eeeEEEEcCCCCEEEEEc
Q 023643          253 CVSCITLDASESWLVRVR  270 (279)
Q Consensus       253 ~v~~~~~~~~~~~l~~~~  270 (279)
                      .+ .=.|+|+|.-++..+
T Consensus      1269 ~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1269 YG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred             cc-cccccCCCceEEeec
Confidence            11 124777776666544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.2e-07  Score=70.77  Aligned_cols=84  Identities=6%  Similarity=-0.026  Sum_probs=68.7

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      ..-+..|...|..++|+|.   +.-++..++.+.+|+|.|+++                   ...+..+..+ ..+++++
T Consensus       186 sq~lp~~g~~IrdlafSp~---~~GLl~~asl~nkiki~dlet-------------------~~~vssy~a~-~~~wSC~  242 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPF---NEGLLGLASLGNKIKIMDLET-------------------SCVVSSYIAY-NQIWSCC  242 (463)
T ss_pred             hhcccccchhhhhhccCcc---ccceeeeeccCceEEEEeccc-------------------ceeeeheecc-CCceeee
Confidence            3456677889999999993   344888999999999999998                   4445555556 7899999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCc
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFT  125 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~  125 (279)
                      |.-+.. +++..|-..|.|.+||++..+
T Consensus       243 wDlde~-h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  243 WDLDER-HVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCCc-ceeEEeccCceEEEEEccCCC
Confidence            998886 799999999999999998643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=3.2e-08  Score=80.69  Aligned_cols=196  Identities=8%  Similarity=0.033  Sum_probs=134.2

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      +++.+|...|.-+.|+.    +.+.|-+...+|.|.+|-+..+.                 .-...+-.....-|.+++|
T Consensus        65 QtLeGH~~sV~vvTWNe----~~QKLTtSDt~GlIiVWmlykgs-----------------W~EEMiNnRnKSvV~SmsW  123 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNE----NNQKLTTSDTSGLIIVWMLYKGS-----------------WCEEMINNRNKSVVVSMSW  123 (1189)
T ss_pred             hhhccCcceEEEEEecc----ccccccccCCCceEEEEeeeccc-----------------HHHHHhhCcCccEEEEEEE
Confidence            57889999999999999    78889999999999999998631                 1111112235567999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      ..+|.  .+.....||.|.+=.++-.+  ..-..+++.+                        ...+.|++|.+.++.+-
T Consensus       124 n~dG~--kIcIvYeDGavIVGsvdGNR--IwgKeLkg~~------------------------l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen  124 NLDGT--KICIVYEDGAVIVGSVDGNR--IWGKELKGQL------------------------LAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             cCCCc--EEEEEEccCCEEEEeeccce--ecchhcchhe------------------------ccceeecccHHHHHhhh
Confidence            99998  89999999998776553211  1111112211                        35678999999888888


Q ss_pred             CCCeEEEEecCCC-------cEEEE----eecCCcceEEEEEc--------CCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          179 GDSCAYCWDVESS-------RIKMV----FKGHSDYLHCIVAR--------NSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       179 ~d~~i~i~d~~~~-------~~~~~----~~~~~~~i~~i~~~--------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..|.+++||....       .+.-.    +......|-.+.|.        |+...|+.+-.+|.+.+..-.+......+
T Consensus       176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence            8999999997632       11111    11112234445543        47778999999999888754443333333


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                               .....+..+.|+++|..||.++.+
T Consensus       256 ---------dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  256 ---------DTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ---------ecccEeecceecCCCcEEEEccCc
Confidence                     222568899999999999998764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.91  E-value=5.2e-07  Score=77.83  Aligned_cols=221  Identities=10%  Similarity=0.039  Sum_probs=130.9

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..|.++.|..    +++-++.+...|.|.+-|..+..                    +.....-...|.+++|+|+++  
T Consensus        69 ~~i~s~~fl~----d~~~i~v~~~~G~iilvd~et~~--------------------~eivg~vd~GI~aaswS~Dee--  122 (1265)
T KOG1920|consen   69 DEIVSVQFLA----DTNSICVITALGDIILVDPETLE--------------------LEIVGNVDNGISAASWSPDEE--  122 (1265)
T ss_pred             cceEEEEEec----ccceEEEEecCCcEEEEcccccc--------------------eeeeeeccCceEEEeecCCCc--
Confidence            5789999988    78888889999999998887632                    112222456799999999998  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceee---------eccCcccceEEeecCCC-CCccccCCC---------CCCceeEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPIN---------LQGNHVKPVLDLVNHQH-KGPWGALSP---------VPENNAIA  166 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~i~~~~  166 (279)
                      .++.....+++.+-.-.-..-......         ....-.+.-..+..... ..+.....+         ...=++|.
T Consensus       123 ~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is  202 (1265)
T KOG1920|consen  123 LLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS  202 (1265)
T ss_pred             EEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence            888888777776544210000000000         00000000000000000 000000000         11225789


Q ss_pred             EcCCCCeEEE-----ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCCceEEE
Q 023643          167 VDPQGGAIFS-----AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       167 ~~~~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~  238 (279)
                      |--||.++++     ......|++||.+ +.+-..-....+.-.+++|-|.|..+++-.   .|+.|.+|. ++|..-..
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccc
Confidence            9999999988     3333789999976 433333222333345789999999988753   466799988 45544333


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEE---EcCcceEEeC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVR---VRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~~w  278 (279)
                      +....    ......|..++|+.++..||+   ......|.+|
T Consensus       281 f~l~~----p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  281 FVLPF----PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             cccCC----cccccchheeeecCCCCceeeeecccccceEEEE
Confidence            32211    223334899999999999987   4555568888

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=1.2e-06  Score=65.54  Aligned_cols=212  Identities=13%  Similarity=0.096  Sum_probs=118.3

Q ss_pred             CCceeeeccccccccceeeeeec--ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKEREIL--TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      +|+|..||+++++.  +-....-  .....+. ..+    ++..+++++.++.|..||..+++                 
T Consensus         2 ~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~-~~~----~~~~v~~~~~~~~l~~~d~~tG~-----------------   57 (238)
T PF13360_consen    2 DGTLSALDPRTGKE--LWSYDLGPGIGGPVAT-AVP----DGGRVYVASGDGNLYALDAKTGK-----------------   57 (238)
T ss_dssp             TSEEEEEETTTTEE--EEEEECSSSCSSEEET-EEE----ETTEEEEEETTSEEEEEETTTSE-----------------
T ss_pred             CCEEEEEECCCCCE--EEEEECCCCCCCccce-EEE----eCCEEEEEcCCCEEEEEECCCCC-----------------
Confidence            68999999876643  3333211  1122211 222    45677777899999999998853                 


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-eccC-cccceEEeecCCCCCccccCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-LQGN-HVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~  157 (279)
                        .+-.... .+++...-.. .+.  .++.+..++.++.+|..++..   .-. .... ....+                
T Consensus        58 --~~W~~~~-~~~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~---~W~~~~~~~~~~~~----------------  112 (238)
T PF13360_consen   58 --VLWRFDL-PGPISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKV---LWSIYLTSSPPAGV----------------  112 (238)
T ss_dssp             --EEEEEEC-SSCGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCE---EEEEEE-SSCTCST----------------
T ss_pred             --EEEEeec-cccccceeee-ccc--ccccccceeeeEecccCCcce---eeeecccccccccc----------------
Confidence              2222221 1110000111 233  667777888999999765422   111 0100 00000                


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc----------eEEEEEcCCCcEEEEecCCCe-EE
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY----------LHCIVARNSTNQIVTGSEDGT-AR  226 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------i~~i~~~~~~~~l~~~~~d~~-i~  226 (279)
                        .......+  .+..++++..++.|..+|+++|+.+.........          +..-....++ .++.++.++. +.
T Consensus       113 --~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~  187 (238)
T PF13360_consen  113 --RSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA  187 (238)
T ss_dssp             --B--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred             --ccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence              00122233  3678888888999999999999998887654322          1122222234 6666777775 56


Q ss_pred             EEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      + |+.+++.+....          ...+... ..+++..|+.++.++.+..||
T Consensus       188 ~-d~~tg~~~w~~~----------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  188 V-DLATGEKLWSKP----------ISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             E-ETTTTEEEEEEC----------SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             E-ECCCCCEEEEec----------CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence            6 999998665332          1112221 345677788777889998875

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=5.8e-06  Score=62.09  Aligned_cols=193  Identities=17%  Similarity=0.198  Sum_probs=116.2

Q ss_pred             EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec-CCCCceEEE
Q 023643           30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY-GGNEDALLL  108 (279)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~l~  108 (279)
                      ++.|.+.   ++.++++--..+.|..|+..+..                   . ..+....  ...+.+. +++   .|+
T Consensus         4 gp~~d~~---~g~l~~~D~~~~~i~~~~~~~~~-------------------~-~~~~~~~--~~G~~~~~~~g---~l~   55 (246)
T PF08450_consen    4 GPVWDPR---DGRLYWVDIPGGRIYRVDPDTGE-------------------V-EVIDLPG--PNGMAFDRPDG---RLY   55 (246)
T ss_dssp             EEEEETT---TTEEEEEETTTTEEEEEETTTTE-------------------E-EEEESSS--EEEEEEECTTS---EEE
T ss_pred             ceEEECC---CCEEEEEEcCCCEEEEEECCCCe-------------------E-EEEecCC--CceEEEEccCC---EEE
Confidence            4677773   67777887788999999998731                   1 1122111  6677777 564   566


Q ss_pred             EeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC-------
Q 023643          109 SCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD-------  180 (279)
Q Consensus       109 s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------  180 (279)
                      .+...+ +.++|+.+... ....... +....                    ...+.++++|+|++.++....       
T Consensus        56 v~~~~~-~~~~d~~~g~~-~~~~~~~~~~~~~--------------------~~~ND~~vd~~G~ly~t~~~~~~~~~~~  113 (246)
T PF08450_consen   56 VADSGG-IAVVDPDTGKV-TVLADLPDGGVPF--------------------NRPNDVAVDPDGNLYVTDSGGGGASGID  113 (246)
T ss_dssp             EEETTC-EEEEETTTTEE-EEEEEEETTCSCT--------------------EEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred             EEEcCc-eEEEecCCCcE-EEEeeccCCCccc--------------------CCCceEEEcCCCCEEEEecCCCcccccc
Confidence            665544 55558654311 1111111 11000                    125899999999977765443       


Q ss_pred             -CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCce----EEEecCCccccccCcceee
Q 023643          181 -SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKC----IKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       181 -~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v  254 (279)
                       |.|..++.. ++...... .-.....|+|+|+++.| ++-+..+.|..|++.....    ...+..     +.......
T Consensus       114 ~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~g~p  186 (246)
T PF08450_consen  114 PGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-----FPGGPGYP  186 (246)
T ss_dssp             SEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE------SSSSCEE
T ss_pred             ccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-----cCCCCcCC
Confidence             568888877 55444333 34567899999999865 5778889999999863221    112210     01222346


Q ss_pred             eEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          255 SCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       255 ~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      -.++++.+|++.++....+.|.++|
T Consensus       187 DG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  187 DGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             CcceEcCCCCEEEEEcCCCEEEEEC
Confidence            7899999999888877777777664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=4.6e-07  Score=72.94  Aligned_cols=170  Identities=9%  Similarity=0.030  Sum_probs=93.6

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-ecCC--CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSD--GSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.++|+.+++...+..   ..+......|+|    |++.|+. .+.+  ..|.++++.++.                  
T Consensus       214 ~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SP----DG~~la~~~~~~g~~~Iy~~dl~~g~------------------  268 (419)
T PRK04043        214 TLYKYNLYTGKKEKIAS---SQGMLVVSDVSK----DGSKLLLTMAPKGQPDIYLYDTNTKT------------------  268 (419)
T ss_pred             EEEEEECCCCcEEEEec---CCCcEEeeEECC----CCCEEEEEEccCCCcEEEEEECCCCc------------------
Confidence            46666766654433332   334566788999    8876654 3334  457777776531                  


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEee-CCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                       . ..+..+........|+|+++  .|+-.+ ..+.  |.+.|+......  .....+                      
T Consensus       269 -~-~~LT~~~~~d~~p~~SPDG~--~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g----------------------  320 (419)
T PRK04043        269 -L-TQITNYPGIDVNGNFVEDDK--RIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHG----------------------  320 (419)
T ss_pred             -E-EEcccCCCccCccEECCCCC--EEEEEECCCCCceEEEEECCCCCeE--eCccCC----------------------
Confidence             1 12222222233457999998  444443 4444  555554322110  011111                      


Q ss_pred             CCCCceeEEEcCCCCeEEEecCC---------CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-C--eE
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGD---------SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-G--TA  225 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~--~i  225 (279)
                          .....|+|+|+.++.....         ..|.+.|+.+++... +... .......|+|+|+.|+..+.+ +  .+
T Consensus       321 ----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L  394 (419)
T PRK04043        321 ----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL  394 (419)
T ss_pred             ----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence                0123799999987665543         368889998876543 3322 223357899999987665532 2  36


Q ss_pred             EEEeCCC
Q 023643          226 RIWDCKS  232 (279)
Q Consensus       226 ~vwd~~~  232 (279)
                      .+.++..
T Consensus       395 ~~~~l~g  401 (419)
T PRK04043        395 GIIRLNY  401 (419)
T ss_pred             EEEecCC
Confidence            6666643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.88  E-value=1.7e-06  Score=68.02  Aligned_cols=237  Identities=11%  Similarity=0.055  Sum_probs=139.3

Q ss_pred             ceeeeccccccccceeeeeecccc--eE-EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRT--VF-RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .+.+||..++  .++..+.+...+  .+ -+.|+-    +..++|-. ....+.|+++ +....               .
T Consensus       109 ~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~----~D~y~ARv-v~~sl~i~e~-t~n~~---------------~  165 (561)
T COG5354         109 NVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSI----DDKYVARV-VGSSLYIHEI-TDNIE---------------E  165 (561)
T ss_pred             ceeEEeccCc--eeEeeccccCCcccccceeeeee----cchhhhhh-ccCeEEEEec-CCccc---------------c
Confidence            5789998887  446667666655  55 678888    66766655 3347999997 32111               1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEE-----eeCCCcEEEeecCCCccCcc--eeeecc-----Cccc---------
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLS-----CGDDGRICGWRWKEFTESKV--PINLQG-----NHVK---------  139 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iw~~~~~~~~~~--~~~~~~-----~~~~---------  139 (279)
                      .+.+.++  ...+....|+|.++...|+.     .+.++++++|.+........  .....+     +...         
T Consensus       166 ~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t  243 (561)
T COG5354         166 HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT  243 (561)
T ss_pred             Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence            1222222  24467777777644334442     35677788887753211000  000000     0000         


Q ss_pred             ------------ceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe--cCCCeEEEEecCCCcEEEEeecCCcceE
Q 023643          140 ------------PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA--AGDSCAYCWDVESSRIKMVFKGHSDYLH  205 (279)
Q Consensus       140 ------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~i~  205 (279)
                                  .++-+...+...+... ...+.|...+|.|.++.+++.  ..+..+.++|++.. ....+  ....=.
T Consensus       244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rN  319 (561)
T COG5354         244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRN  319 (561)
T ss_pred             eeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccc
Confidence                        0111111111111111 334568999999998877654  57888999999855 44433  344556


Q ss_pred             EEEEcCCCcEEEEecCC---CeEEEEeCCCCceEE-EecCCccccccCcceeeeEEEEcCCCCEEEEEc------CcceE
Q 023643          206 CIVARNSTNQIVTGSED---GTARIWDCKSGKCIK-VIDPVKDKQLKGVISCVSCITLDASESWLVRVR------ATNYV  275 (279)
Q Consensus       206 ~i~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i  275 (279)
                      .+.|+|.+++++.++.|   |.+-+||........ .+.        +.  ..+-+.|+||++++.+..      .|..+
T Consensus       320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~--------~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i  389 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN--------GL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSI  389 (561)
T ss_pred             cccccCcccEEEEecCCccccceEEeccCCceEEEEEee--------cC--CceEeeccCCceEEEecCCCcccccCcce
Confidence            78899999999987754   569999987654433 442        22  234567999999888763      37788


Q ss_pred             EeCC
Q 023643          276 ILFS  279 (279)
Q Consensus       276 ~~wd  279 (279)
                      .+||
T Consensus       390 ~l~~  393 (561)
T COG5354         390 KLWD  393 (561)
T ss_pred             EEEE
Confidence            8885

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.87  E-value=6.5e-07  Score=71.73  Aligned_cols=132  Identities=13%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .++.++.+|.+..+|.++.+   ..-....           ..             ......  .+..+++++.+|.++.
T Consensus       243 ~vy~~~~~g~l~a~d~~tG~---~~W~~~~-----------~~-------------~~~p~~--~~~~vyv~~~~G~l~~  293 (377)
T TIGR03300       243 QVYAVSYQGRVAALDLRSGR---VLWKRDA-----------SS-------------YQGPAV--DDNRLYVTDADGVVVA  293 (377)
T ss_pred             EEEEEEcCCEEEEEECCCCc---EEEeecc-----------CC-------------ccCceE--eCCEEEEECCCCeEEE
Confidence            77788889999999986432   1111110           00             011222  4567888889999999


Q ss_pred             EecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceee-eEEEEcCCC
Q 023643          186 WDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV-SCITLDASE  263 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~  263 (279)
                      +|..+++.+......... ......  .+..+++++.+|.|+++|..+++.+..++.        +...+ ...++.  +
T Consensus       294 ~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~--------~~~~~~~sp~~~--~  361 (377)
T TIGR03300       294 LDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT--------DGSGIASPPVVV--G  361 (377)
T ss_pred             EECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc--------CCCccccCCEEE--C
Confidence            999999887765322111 111112  367888999999999999999999988742        22221 222222  3


Q ss_pred             CEEEEEcCcceEEeC
Q 023643          264 SWLVRVRATNYVILF  278 (279)
Q Consensus       264 ~~l~~~~~d~~i~~w  278 (279)
                      ..|+.++.||.|..|
T Consensus       362 ~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       362 DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEeCCceEEEe
Confidence            458888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=4.9e-07  Score=74.59  Aligned_cols=212  Identities=13%  Similarity=0.135  Sum_probs=139.7

Q ss_pred             ccceeeeeecccceEEEEECCCCC--------CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc
Q 023643           15 KSILKEREILTRTVFRTVWGPSKD--------GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL   86 (279)
Q Consensus        15 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (279)
                      .+.++.++.|...|+.+.|.|...        ...-+||++...|.|.+||...                   ...+..+
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~-------------------~s~~~~l  105 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL-------------------ASVINWL  105 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh-------------------hhhhhhh
Confidence            356788889999999999998432        1234678888999999999998                   5556677


Q ss_pred             cCCccCeEEEEecCCCCc--eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           87 HGHDGPAYDVKFYGGNED--ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        87 ~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      ..|.+++..++|.+....  ..|+.-....++.+|+..++   ...-.....+.                      ...|
T Consensus       106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG---~k~Wk~~ys~~----------------------iLs~  160 (1062)
T KOG1912|consen  106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG---EKFWKYDYSHE----------------------ILSC  160 (1062)
T ss_pred             cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC---ceeeccccCCc----------------------ceee
Confidence            889999999999874321  36777777889999997654   22222211111                      1356


Q ss_pred             EEEcC-CCCeEEEecCCCeEEEEecCC-------CcEEEEeecCCc-------------------------ceEEEEEcC
Q 023643          165 IAVDP-QGGAIFSAAGDSCAYCWDVES-------SRIKMVFKGHSD-------------------------YLHCIVARN  211 (279)
Q Consensus       165 ~~~~~-~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~-------------------------~i~~i~~~~  211 (279)
                      +.++| +.+.+..-+..|.+.+.+..-       ++..+.-..|..                         ..-.++|+|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p  240 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP  240 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence            77777 445666666667766665431       122221111111                         011356788


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC--CCEEEEEcCcceEEeC
Q 023643          212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS--ESWLVRVRATNYVILF  278 (279)
Q Consensus       212 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~w  278 (279)
                      .-+.++.......+.|+|++-..++.++...        .+.+.-+.+-|+  ...|++.-.||.+.+|
T Consensus       241 ~~rn~lfi~~prellv~dle~~~~l~vvpie--------r~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  241 HWRNILFITFPRELLVFDLEYECCLAVVPIE--------RGGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             hhhceEEEEeccceEEEcchhhceeEEEEec--------cCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence            7555555567888999999999998888532        233344555554  4679999999999887

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=5.8e-08  Score=74.88  Aligned_cols=210  Identities=11%  Similarity=0.006  Sum_probs=140.9

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      .|...|+.+.-..     .+++.+++.||.++.|.-..-+.                .+.+..++.|-+.+.+++.+-++
T Consensus         7 mhrd~i~hv~~tk-----a~fiiqASlDGh~KFWkKs~isG----------------vEfVKhFraHL~~I~sl~~S~dg   65 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-----AKFIIQASLDGHKKFWKKSRISG----------------VEFVKHFRAHLGVILSLAVSYDG   65 (558)
T ss_pred             cccceeeeEeeeh-----hheEEeeecchhhhhcCCCCccc----------------eeehhhhHHHHHHHHhhhccccc
Confidence            4777777776554     68999999999999998764111                35566778899999999999998


Q ss_pred             CceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC--eEEE-ec
Q 023643          103 EDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG--AIFS-AA  178 (279)
Q Consensus       103 ~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~-~~  178 (279)
                      -  ++.|.+. |..++++|+.+..-...+....-   .         .            --++..++...  .+++ ..
T Consensus        66 ~--L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l---P---------g------------~a~wv~skGd~~s~IAVs~~  119 (558)
T KOG0882|consen   66 W--LFRSVEDPDHSVKVFDVENFDMINMIKLVDL---P---------G------------FAEWVTSKGDKISLIAVSLF  119 (558)
T ss_pred             e--eEeeccCcccceeEEEeeccchhhhcccccC---C---------C------------ceEEecCCCCeeeeEEeecc
Confidence            7  8889777 99999999875321111000000   0         0            01112222111  3333 34


Q ss_pred             CCCeEEEEecCCCc-EE-EEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC------CceEEEecCCc-cccccC
Q 023643          179 GDSCAYCWDVESSR-IK-MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS------GKCIKVIDPVK-DKQLKG  249 (279)
Q Consensus       179 ~d~~i~i~d~~~~~-~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~------~~~~~~~~~~~-~~~~~~  249 (279)
                      .++.|.++|-...- +. ..-+-|..+|.++.+.+.+..+++....|.|.-|....      .+....+.... ...+..
T Consensus       120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence            57899999976543 33 33345999999999999999999999999999998762      11111111110 012233


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ......++.|+|++..+.+-+.|..|++++
T Consensus       200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             cccCccceEEccccCcccccCcccEEEEEE
Confidence            445678999999999999999999998863

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=1.2e-07  Score=79.39  Aligned_cols=180  Identities=13%  Similarity=0.140  Sum_probs=119.6

Q ss_pred             CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643           41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR  120 (279)
Q Consensus        41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~  120 (279)
                      +..++-|+-...+..+|+++.                   ...+...-..+.|.-++.  ++.  ++.+|...|+|.+-|
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~-------------------~e~r~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD  203 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTE-------------------KETRTTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRD  203 (1118)
T ss_pred             Ccceeecchhhheeeeecccc-------------------eeeeeeeccCCceEEEEe--cCc--EEEeecccceEEeec
Confidence            455666666666777777762                   222222222233555554  444  899999999999999


Q ss_pred             cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC---------CCeEEEEecCCC
Q 023643          121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG---------DSCAYCWDVESS  191 (279)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~  191 (279)
                      ++..   +.+..+..+. .                       .-.+|+-.|+.|++++.         |..|++||++..
T Consensus       204 ~~s~---~~iht~~aHs-~-----------------------siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  204 PNSF---ETIHTFDAHS-G-----------------------SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             CCcC---ceeeeeeccc-c-----------------------ceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            7654   3333333321 1                       12245667888888764         667899999988


Q ss_pred             cEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCC-Cce---EEEecCCccccccCcceeeeEEEEcCCCCEE
Q 023643          192 RIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKS-GKC---IKVIDPVKDKQLKGVISCVSCITLDASESWL  266 (279)
Q Consensus       192 ~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~-~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  266 (279)
                      +.+.-+.-+.++ .-+.|+|. ...++.++..|...+-|..+ +.+   +..+        ......+.++++++++..|
T Consensus       257 ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v--------~p~~s~i~~fDiSsn~~al  327 (1118)
T KOG1275|consen  257 RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV--------NPNGSGISAFDISSNGDAL  327 (1118)
T ss_pred             hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE--------ccCCCcceeEEecCCCceE
Confidence            777666555544 56778886 67788889999999988332 111   2222        2233458999999999999


Q ss_pred             EEEcCcceEEeCC
Q 023643          267 VRVRATNYVILFS  279 (279)
Q Consensus       267 ~~~~~d~~i~~wd  279 (279)
                      |.|..+|.|.+|.
T Consensus       328 afgd~~g~v~~wa  340 (1118)
T KOG1275|consen  328 AFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecccCcEeeec
Confidence            9999999999994

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.83  E-value=1.1e-06  Score=69.13  Aligned_cols=199  Identities=12%  Similarity=0.109  Sum_probs=119.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-----------CCCcEEEEeCCCCCcccccccC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-----------SDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-----------~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      ++.+++|.+-....  +.+.......=..+.|.+    .|++|+.--           ....+.|+++..          
T Consensus       201 pa~~~i~sIp~~s~--l~tk~lfk~~~~qLkW~~----~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e----------  264 (561)
T COG5354         201 PAMVRILSIPKNSV--LVTKNLFKVSGVQLKWQV----LGKYLLVLVMTHTKSNKSYFGESNLYLLRITE----------  264 (561)
T ss_pred             CcEEEEEEccCCCe--eeeeeeEeecccEEEEec----CCceEEEEEEEeeecccceeccceEEEEeecc----------
Confidence            45566776543322  222222223334678888    677665421           113455666553          


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                                +.+.....-.++|...+|.|.+++--+++|..+.++.++|++..    ...... ..             
T Consensus       265 ----------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~~~~P-e~-------------  316 (561)
T COG5354         265 ----------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LRFYFP-EQ-------------  316 (561)
T ss_pred             ----------cccceeccccccceeeeecccCCceeEEecccccceeecccccc----eEEecC-Cc-------------
Confidence                      22233335578999999999988334455568889999998642    111111 11             


Q ss_pred             CccccCCCCCCceeEEEcCCCCeEEEecCC---CeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEec------
Q 023643          151 GPWGALSPVPENNAIAVDPQGGAIFSAAGD---SCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGS------  220 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~------  220 (279)
                                .=+.+.|+|.+++++.++-|   |.|-+||......+. .+.+..  .+-+.|+|++.++.+..      
T Consensus       317 ----------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~  384 (561)
T COG5354         317 ----------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLR  384 (561)
T ss_pred             ----------ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccc
Confidence                      12567899999998887654   789999987554333 555433  34567999999987764      


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      .|..|+|||+...+ ..               ..+.+.|.|.+++..+.+.+
T Consensus       385 ~Dn~i~l~~v~g~~-~f---------------el~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         385 VDNSIKLWDVYGAK-VF---------------ELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             cCcceEEEEecCch-hh---------------hhhhccccCCcccceeeccC
Confidence            47889999975332 22               12455666666655555443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.4e-06  Score=69.31  Aligned_cols=182  Identities=10%  Similarity=0.038  Sum_probs=121.6

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      -+-+.|||    .|.+|++--.-| |.+|--.+                   ...++.+. |.+ |.-+.|+|..+  ||
T Consensus       213 etyv~wSP----~GTYL~t~Hk~G-I~lWGG~~-------------------f~r~~RF~-Hp~-Vq~idfSP~Ek--YL  264 (698)
T KOG2314|consen  213 ETYVRWSP----KGTYLVTFHKQG-IALWGGES-------------------FDRIQRFY-HPG-VQFIDFSPNEK--YL  264 (698)
T ss_pred             eeeEEecC----CceEEEEEeccc-eeeecCcc-------------------HHHHHhcc-CCC-ceeeecCCccc--eE
Confidence            35688999    899999987766 78897665                   34444443 655 88999999998  99


Q ss_pred             EEeeC-----------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643          108 LSCGD-----------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus       108 ~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      +|-+.           ...+.|||+.++........+...  ...                    -.-+.||.|++++|-
T Consensus       265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~--~~~--------------------WP~frWS~DdKy~Ar  322 (698)
T KOG2314|consen  265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP--YLK--------------------WPIFRWSHDDKYFAR  322 (698)
T ss_pred             EEecCCccccCcccCCCceEEEEEccccchhcceeccCCC--ccc--------------------cceEEeccCCceeEE
Confidence            98764           257899999876433322222111  111                    135689999999887


Q ss_pred             ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-----CCeEEEEeCCCCceEEEecCCccccccCcc
Q 023643          177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-----DGTARIWDCKSGKCIKVIDPVKDKQLKGVI  251 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  251 (279)
                      -.. ..|.||+..+..++..-.-.-..|....|+|.++.||-=..     -..+.+-.+.+++.+++-+        -+.
T Consensus       323 m~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfn  393 (698)
T KOG2314|consen  323 MTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFN  393 (698)
T ss_pred             ecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------cee
Confidence            665 67999998765444433334567888999999888775442     2346677777777766653        232


Q ss_pred             eeeeEEEEcCCCCEEEE
Q 023643          252 SCVSCITLDASESWLVR  268 (279)
Q Consensus       252 ~~v~~~~~~~~~~~l~~  268 (279)
                      -.=..+-|..+|.+|+.
T Consensus       394 VsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  394 VSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             eeccEEEeccCCcEEEE
Confidence            22334567788888765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=1.6e-05  Score=59.97  Aligned_cols=202  Identities=12%  Similarity=0.167  Sum_probs=124.5

Q ss_pred             EEEEECCCCCCCCCEEEEecCCCc-EEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           29 FRTVWGPSKDGSPDTIVIASSDGS-ITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        29 ~~~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      -.++.+|.   .+..++.+-.-|+ ..+||..++.....+.           ..+-+.|.+|      -.|+++++  +|
T Consensus         8 H~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~--~L   65 (305)
T PF07433_consen    8 HGVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGR--LL   65 (305)
T ss_pred             cceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCC--EE
Confidence            35566673   5556666665554 5678888743322211           2222445555      36999998  77


Q ss_pred             EEee-----CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec----
Q 023643          108 LSCG-----DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA----  178 (279)
Q Consensus       108 ~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----  178 (279)
                      ++.=     ..|.|-|||...  ....+..+..+-..                      -..+.+.|+++.|+++-    
T Consensus        66 ytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIG----------------------PHel~l~pDG~tLvVANGGI~  121 (305)
T PF07433_consen   66 YTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIG----------------------PHELLLMPDGETLVVANGGIE  121 (305)
T ss_pred             EEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcC----------------------hhhEEEcCCCCEEEEEcCCCc
Confidence            7753     358899999862  22333333333222                      24667888887777752    


Q ss_pred             --------------CCCeEEEEecCCCcEEEEee----cCCcceEEEEEcCCCcEEEEecCCCe-------EEEEeCCCC
Q 023643          179 --------------GDSCAYCWDVESSRIKMVFK----GHSDYLHCIVARNSTNQIVTGSEDGT-------ARIWDCKSG  233 (279)
Q Consensus       179 --------------~d~~i~i~d~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~d~~-------i~vwd~~~~  233 (279)
                                    .+.++...|..+++.+.+..    .|...|+.+++.++|..++..-..|.       |-+++  .+
T Consensus       122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g  199 (305)
T PF07433_consen  122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RG  199 (305)
T ss_pred             cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CC
Confidence                          24567778888998887743    37788999999999887776655443       34443  33


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      +.+..+.... .....-...+-+|++++++.++++.+ ..+.+.+||
T Consensus       200 ~~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  200 GALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             CcceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            3333332221 11133446789999999998776555 567788885

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.78  E-value=2.7e-07  Score=77.29  Aligned_cols=149  Identities=13%  Similarity=0.174  Sum_probs=107.8

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..|.-++.      +++++.+|...|+|.+-|.++                   .+.++++..|++.|..+..  .|+  
T Consensus       178 ~~v~imR~------Nnr~lf~G~t~G~V~LrD~~s-------------------~~~iht~~aHs~siSDfDv--~GN--  228 (1118)
T KOG1275|consen  178 SGVTIMRY------NNRNLFCGDTRGTVFLRDPNS-------------------FETIHTFDAHSGSISDFDV--QGN--  228 (1118)
T ss_pred             CceEEEEe------cCcEEEeecccceEEeecCCc-------------------Cceeeeeeccccceeeeec--cCC--
Confidence            34555554      558999999999999999998                   7889999999999987665  454  


Q ss_pred             EEEEeeC---------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEE
Q 023643          106 LLLSCGD---------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIF  175 (279)
Q Consensus       106 ~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  175 (279)
                      .|++||.         |.-|++||++..+....+....+                          ..-+.|.|.- ..++
T Consensus       229 lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--------------------------P~flrf~Psl~t~~~  282 (1118)
T KOG1275|consen  229 LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--------------------------PQFLRFHPSLTTRLA  282 (1118)
T ss_pred             eEEEeecccccccccccchhhhhhhhhhhccCCcccccC--------------------------chhhhhcccccceEE
Confidence            8999885         55678999886533322222222                          1234566643 3678


Q ss_pred             EecCCCeEEEEecCC-CcE-EE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          176 SAAGDSCAYCWDVES-SRI-KM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~-~~~-~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      +++..|...+.|..+ +.+ ..  .+......+..++++++++.++.|..+|.|.+|-
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            888889999999432 111 22  2233445699999999999999999999999997

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.75  E-value=2.6e-05  Score=57.82  Aligned_cols=218  Identities=14%  Similarity=0.116  Sum_probs=115.7

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC-ccCeEEEEe
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH-DGPAYDVKF   98 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~   98 (279)
                      .+.+-...+..+.|.|+   ++.++++....+.|..++.+.                    +.++.+.-. .+-...|++
T Consensus        16 ~l~g~~~e~SGLTy~pd---~~tLfaV~d~~~~i~els~~G--------------------~vlr~i~l~g~~D~EgI~y   72 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPD---TGTLFAVQDEPGEIYELSLDG--------------------KVLRRIPLDGFGDYEGITY   72 (248)
T ss_dssp             E-TT--S-EEEEEEETT---TTEEEEEETTTTEEEEEETT----------------------EEEEEE-SS-SSEEEEEE
T ss_pred             ECCCccCCccccEEcCC---CCeEEEEECCCCEEEEEcCCC--------------------CEEEEEeCCCCCCceeEEE
Confidence            44445567999999993   455777777888888777652                    333333211 245788889


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      ..++.  ++++.-.++.+.++++.............      -..+...        ...+..+..++|+|.++.|+++-
T Consensus        73 ~g~~~--~vl~~Er~~~L~~~~~~~~~~~~~~~~~~------~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~k  136 (248)
T PF06977_consen   73 LGNGR--YVLSEERDQRLYIFTIDDDTTSLDRADVQ------KISLGFP--------NKGNKGFEGLAYDPKTNRLFVAK  136 (248)
T ss_dssp             -STTE--EEEEETTTTEEEEEEE----TT--EEEEE------EEE---S-----------SS--EEEEEETTTTEEEEEE
T ss_pred             ECCCE--EEEEEcCCCcEEEEEEeccccccchhhce------EEecccc--------cCCCcceEEEEEcCCCCEEEEEe
Confidence            87775  66666678999999985432211111100      0000000        00112368999999988888887


Q ss_pred             CCCeEEEEecCC---CcEEEEe--e------cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccc-
Q 023643          179 GDSCAYCWDVES---SRIKMVF--K------GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK-  245 (279)
Q Consensus       179 ~d~~i~i~d~~~---~~~~~~~--~------~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-  245 (279)
                      ...-..+|.+..   ...+...  .      .....+.+++++|. +++++....+..|..+| .+|+.+..+...... 
T Consensus       137 E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~  215 (248)
T PF06977_consen  137 ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH  215 (248)
T ss_dssp             ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG
T ss_pred             CCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc
Confidence            666666666653   2222111  1      12335788999995 77888888899999999 678877766543210 


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          246 QLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+...-..--+|+|+++|++.+++ +-+..++|
T Consensus       216 gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  216 GLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             G-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             CcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            001111346789999999766554 55665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.72  E-value=2.2e-05  Score=63.29  Aligned_cols=107  Identities=14%  Similarity=0.178  Sum_probs=75.4

Q ss_pred             eeEEEcC-CCCeEEEe----cCCCe----EEEEecCCCcEEEE--e-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          163 NAIAVDP-QGGAIFSA----AGDSC----AYCWDVESSRIKMV--F-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       163 ~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~~~~~--~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      .++.|+- +...+.+.    +.+|.    -.+|+....+..+.  . -...+.+.|++++|+...++.|+.||+|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            5666665 33444443    22332    34666655443321  1 136678999999999999999999999999998


Q ss_pred             CCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+.....          ......+.++|+|+|..+++|+..|.+.+||
T Consensus       289 ~~~~t~~~----------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  289 TRGVTLLA----------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             CCCeeeee----------eecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            76633322          2224568899999999999999999999997

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=7.9e-06  Score=68.42  Aligned_cols=200  Identities=9%  Similarity=0.081  Sum_probs=116.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC-----cEEEEeCCCCCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG-----SITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      ||.|.+.+-   ....+..+..+...+...-|.-.   +.++|++.+.|+     .|+||+++.......        .+
T Consensus        44 ~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~---~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--------P~  109 (933)
T KOG2114|consen   44 DGRVVILNS---SFQLIRGFQAYEQSIVQFLYILN---KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--------PQ  109 (933)
T ss_pred             cccEEEecc---cceeeehheecchhhhhHhhccc---CceEEEEEeecCCCCceEEEEecccccCCCCC--------cc
Confidence            455555441   11334556666665333333331   446787766554     489999986421110        00


Q ss_pred             eeecccccc--ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           77 LLGIEPDGF--LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        77 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                      ....-.+..  ......++.+++.+.+-+  .+|.|-.+|.|..+.-+-.+...........                  
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~------------------  169 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDYSHR------------------  169 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceeeecc------------------
Confidence            000000111  112456788999998876  8999999999998874322111111111110                  


Q ss_pred             cCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcE-EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          155 ALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRI-KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                         ...+|+.+++..++.. +++++ -..|.+|.+....+ ...+..|...+.|..+++....+++++ +..+.+|+...
T Consensus       170 ---~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~  244 (933)
T KOG2114|consen  170 ---GKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG  244 (933)
T ss_pred             ---CCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence               1124899999888876 44444 46799999884443 344677888899999988655455554 45599999887


Q ss_pred             CceEEEec
Q 023643          233 GKCIKVID  240 (279)
Q Consensus       233 ~~~~~~~~  240 (279)
                      .++-..+.
T Consensus       245 ~~~cfaf~  252 (933)
T KOG2114|consen  245 RGPCFAFE  252 (933)
T ss_pred             cceeeeec
Confidence            66666663

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.71  E-value=5.3e-06  Score=66.50  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV  250 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  250 (279)
                      +..+++++.++.++.+|..+++.+...... . .....  ..+..++.++.+|.|..+|..+++.+......     .. 
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~~-  310 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----KY-  310 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----cC-
Confidence            457888888999999999999887766521 1 11122  24677888889999999999999887655211     11 


Q ss_pred             ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          251 ISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       ........  .+..|++++.+|.++++|
T Consensus       311 -~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       311 -RQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             -CccccCEE--ECCEEEEEeCCCEEEEEE
Confidence             11122222  356788888888888764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.70  E-value=5.4e-09  Score=83.87  Aligned_cols=208  Identities=14%  Similarity=0.161  Sum_probs=128.7

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...+.|+++.-.  .+...+++|..+|.|-+-.+....                 ........+|..++++++|++-.. 
T Consensus        56 tqy~kcva~~y~--~d~cIlavG~atG~I~l~s~r~~h-----------------dSs~E~tp~~ar~Ct~lAwneLDt-  115 (783)
T KOG1008|consen   56 TQYVKCVASFYG--NDRCILAVGSATGNISLLSVRHPH-----------------DSSAEVTPGYARPCTSLAWNELDT-  115 (783)
T ss_pred             CCCceeehhhcC--CchhhhhhccccCceEEeecCCcc-----------------cccceecccccccccccccccccH-
Confidence            345677776552  134578999999999998887531                 111233456888999999999754 


Q ss_pred             eEEEEee----CCCcEEEeecCCCcc-CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          105 ALLLSCG----DDGRICGWRWKEFTE-SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       105 ~~l~s~~----~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      +.||.|-    .|..+.|||+...-. ......+.+.                     ......+++|..+.+++.+|..
T Consensus       116 n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~---------------------~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen  116 NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS---------------------TLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             HHHHhhhhhhcccCCccceecccccCCCccccccccc---------------------cccCccccccccCcchhhcccc
Confidence            3566652    367899999865311 1111111110                     0112468888888889999999


Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEe-CCCC-ceEEEecCCccccccCcceeeeE
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWD-CKSG-KCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd-~~~~-~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      ...++++|++.. +.....-.+..+..+..+| .++|+++-. ||.|.+|| .+.- .++..+...+    ......+..
T Consensus       175 sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~----N~~~~~l~~  248 (783)
T KOG1008|consen  175 SRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE----NKKPKQLFA  248 (783)
T ss_pred             cchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCC----CCcccceee
Confidence            999999999843 2221222344567788888 788888766 99999999 4332 2333332111    111225889


Q ss_pred             EEEcCCCC-EEEEEc-CcceEEeCC
Q 023643          257 ITLDASES-WLVRVR-ATNYVILFS  279 (279)
Q Consensus       257 ~~~~~~~~-~l~~~~-~d~~i~~wd  279 (279)
                      ++|+|... .+++.+ ..++|+++|
T Consensus       249 ~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  249 LAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             EEeccCCcchhhhhccCcceEEEec
Confidence            99999532 344443 446777764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.5e-06  Score=71.92  Aligned_cols=161  Identities=12%  Similarity=0.132  Sum_probs=120.7

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      |...-.++.|+|     +.++|-|+.. .|.+-|..+                   .+.+..+.-|...|+.+.|.|..-
T Consensus        14 ~~sN~~A~Dw~~-----~GLiAygshs-lV~VVDs~s-------------------~q~iqsie~h~s~V~~VrWap~~~   68 (1062)
T KOG1912|consen   14 SRSNRNAADWSP-----SGLIAYGSHS-LVSVVDSRS-------------------LQLIQSIELHQSAVTSVRWAPAPS   68 (1062)
T ss_pred             CcccccccccCc-----cceEEEecCc-eEEEEehhh-------------------hhhhhccccCccceeEEEeccCCC
Confidence            344567788998     4577777665 688888887                   677888888999999999998653


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCC
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDS  181 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~  181 (279)
                        ...                                                         .++|  ..-.|+++...|
T Consensus        69 --p~~---------------------------------------------------------llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   69 --PRD---------------------------------------------------------LLSPSSSQLLIASADISG   89 (1062)
T ss_pred             --chh---------------------------------------------------------ccCccccceeEEeccccC
Confidence              110                                                         0111  123678888899


Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcC---CC-cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARN---ST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      .|.+||...+..+..+..|..++..++|-+   +. ..|++-....+|.+|+..+|+.....        ........|+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~ys~~iLs~f  161 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DYSHEILSCF  161 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------ccCCcceeee
Confidence            999999999999999998999999999976   23 56777788899999999999998887        3444567888


Q ss_pred             EEcC-CCCEEEEEcCcceEE
Q 023643          258 TLDA-SESWLVRVRATNYVI  276 (279)
Q Consensus       258 ~~~~-~~~~l~~~~~d~~i~  276 (279)
                      .++| |.+.+..-+..|.+.
T Consensus       162 ~~DPfd~rh~~~l~s~g~vl  181 (1062)
T KOG1912|consen  162 RVDPFDSRHFCVLGSKGFVL  181 (1062)
T ss_pred             eeCCCCcceEEEEccCceEE
Confidence            8888 555555555556554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.1e-06  Score=68.26  Aligned_cols=137  Identities=14%  Similarity=0.154  Sum_probs=94.0

Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      =+-+.|+|.|.  ||+|-..-| |.+|--...   .....+.  |                      ..|.-+.|||..+
T Consensus       213 etyv~wSP~GT--YL~t~Hk~G-I~lWGG~~f---~r~~RF~--H----------------------p~Vq~idfSP~Ek  262 (698)
T KOG2314|consen  213 ETYVRWSPKGT--YLVTFHKQG-IALWGGESF---DRIQRFY--H----------------------PGVQFIDFSPNEK  262 (698)
T ss_pred             eeeEEecCCce--EEEEEeccc-eeeecCccH---HHHHhcc--C----------------------CCceeeecCCccc
Confidence            45689999998  999988755 888973221   1111111  0                      0267889999999


Q ss_pred             eEEEecC-----------CCeEEEEecCCCcEEEEeecCC--cceE-EEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          173 AIFSAAG-----------DSCAYCWDVESSRIKMVFKGHS--DYLH-CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       173 ~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~--~~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      +|++=+.           ...+.|||+++|...+.|....  ..+. -..||.|++++|--.. .+|.||+..+..++..
T Consensus       263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~  341 (698)
T KOG2314|consen  263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK  341 (698)
T ss_pred             eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc
Confidence            9998543           2579999999999999887532  2222 3589999999987665 5699998776433322


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVR  268 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  268 (279)
                      -        .-.-..|....|+|.+..||-
T Consensus       342 K--------slki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  342 K--------SLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             c--------ccCCccccCcccCCCcceEEE
Confidence            1        122245778889998887764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.63  E-value=6.4e-07  Score=71.79  Aligned_cols=72  Identities=15%  Similarity=0.139  Sum_probs=60.8

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      ..+.|++++|+...++.|+.||.|.+||...+.....  ...-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            4588999999999999999999999999876633322  24456789999999999999999999999998644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.62  E-value=8.2e-05  Score=56.21  Aligned_cols=194  Identities=15%  Similarity=0.179  Sum_probs=112.1

Q ss_pred             EEECCCCCCCCCEEEEec-----CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           31 TVWGPSKDGSPDTIVIAS-----SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        31 ~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      -.|+|    ||++|.+.-     ..|.|-|||....                  .+.+..+..|.-.-..+.+.|+++  
T Consensus        56 g~fs~----dG~~LytTEnd~~~g~G~IgVyd~~~~------------------~~ri~E~~s~GIGPHel~l~pDG~--  111 (305)
T PF07433_consen   56 GVFSP----DGRLLYTTENDYETGRGVIGVYDAARG------------------YRRIGEFPSHGIGPHELLLMPDGE--  111 (305)
T ss_pred             EEEcC----CCCEEEEeccccCCCcEEEEEEECcCC------------------cEEEeEecCCCcChhhEEEcCCCC--
Confidence            57999    999998863     4578999999942                  566677777766667788999997  


Q ss_pred             EEEEeeC-------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643          106 LLLSCGD-------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus       106 ~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      .|+.+-.       .|..++ ++.+....-............-..+..         ..+...|+-++++++|..++..-
T Consensus       112 tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~---------~~~~lSiRHLa~~~~G~V~~a~Q  181 (305)
T PF07433_consen  112 TLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPP---------DLHQLSIRHLAVDGDGTVAFAMQ  181 (305)
T ss_pred             EEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCc---------cccccceeeEEecCCCcEEEEEe
Confidence            5655421       122222 222111111111000011110101100         11223478899999887655543


Q ss_pred             CCC-------eEEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCCCceEEEecCCc
Q 023643          179 GDS-------CAYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKSGKCIKVIDPVK  243 (279)
Q Consensus       179 ~d~-------~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~  243 (279)
                      ..|       .+-+++.  ++.+..+.       .-.+.+-+|++++++.++++. -.-+.+.+||..+++.+...... 
T Consensus       182 ~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-  258 (305)
T PF07433_consen  182 YQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-  258 (305)
T ss_pred             cCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-
Confidence            322       2333432  33233232       234678999999998877554 46778999999999998876432 


Q ss_pred             cccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          244 DKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                               .+..++-.+++ ++++.+.
T Consensus       259 ---------D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  259 ---------DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             ---------ceeeeeecCCc-eEEeCCC
Confidence                     35666666666 5555444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.61  E-value=5.4e-08  Score=78.35  Aligned_cols=184  Identities=15%  Similarity=0.164  Sum_probs=112.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----CCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----SDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      +|.|.+-........-....+++....++++|++.   |.+.||+|-    .|-.+.|||+.+.-...            
T Consensus        79 tG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL---Dtn~LAagldkhrnds~~~Iwdi~s~ltvP------------  143 (783)
T KOG1008|consen   79 TGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL---DTNHLAAGLDKHRNDSSLKIWDINSLLTVP------------  143 (783)
T ss_pred             cCceEEeecCCcccccceecccccccccccccccc---cHHHHHhhhhhhcccCCccceecccccCCC------------
Confidence            45555554433222222344567788999999995   788888874    45679999999852110            


Q ss_pred             eeccccccccC-CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHG-HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                         .....|.+ -.....+++|..+.+  ++.+|.....+.++|++...........+                      
T Consensus       144 ---ke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnTk----------------------  196 (783)
T KOG1008|consen  144 ---KESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNTK----------------------  196 (783)
T ss_pred             ---ccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhhh----------------------
Confidence               00011111 233455889987776  88899888899999987421111111111                      


Q ss_pred             CCCCCceeEEEcC-CCCeEEEecCCCeEEEEec-CCC-cEEEEeecCC----cceEEEEEcCC-CcEEEEec-CCCeEEE
Q 023643          157 SPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDV-ESS-RIKMVFKGHS----DYLHCIVARNS-TNQIVTGS-EDGTARI  227 (279)
Q Consensus       157 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~-~~~~~~~~~~----~~i~~i~~~~~-~~~l~~~~-~d~~i~v  227 (279)
                          .+..+.++| .++++++ ..||.|-+||. ++- .++..+....    ..+..++|.|. ...+++.+ ..++|++
T Consensus       197 ----~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl  271 (783)
T KOG1008|consen  197 ----YVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL  271 (783)
T ss_pred             ----hcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence                145667777 5566665 44999999993 332 2333332222    34899999995 33444444 5678999


Q ss_pred             EeCCC
Q 023643          228 WDCKS  232 (279)
Q Consensus       228 wd~~~  232 (279)
                      ||+..
T Consensus       272 ydi~~  276 (783)
T KOG1008|consen  272 YDICV  276 (783)
T ss_pred             ecccc
Confidence            99864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=2.4e-06  Score=71.55  Aligned_cols=71  Identities=14%  Similarity=0.292  Sum_probs=60.6

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      +++++|+|    ..-.|+.|-.-|.+.+|..++                   .+.......|..++..+.|+++|.  .+
T Consensus        62 atSLCWHp----e~~vLa~gwe~g~~~v~~~~~-------------------~e~htv~~th~a~i~~l~wS~~G~--~l  116 (1416)
T KOG3617|consen   62 ATSLCWHP----EEFVLAQGWEMGVSDVQKTNT-------------------TETHTVVETHPAPIQGLDWSHDGT--VL  116 (1416)
T ss_pred             hhhhccCh----HHHHHhhccccceeEEEecCC-------------------ceeeeeccCCCCCceeEEecCCCC--eE
Confidence            56799999    778889999999999999987                   233334456999999999999998  99


Q ss_pred             EEeeCCCcEEEeecCC
Q 023643          108 LSCGDDGRICGWRWKE  123 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~  123 (279)
                      +|+..=|.+.+|....
T Consensus       117 ~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEcCCCceeEEEEeee
Confidence            9999999999999863

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.51  E-value=4.3e-05  Score=60.93  Aligned_cols=220  Identities=13%  Similarity=0.125  Sum_probs=113.9

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc------ccc-------cCCcccceeee------------cc
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL------PLG-------LSNSKVQQLLG------------IE   81 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~-------~~~~~~~~~~~------------~~   81 (279)
                      .|+.+.|++    +..-|++|...|.|.||.......-.      ...       ..+. ...+..            ..
T Consensus         3 ~v~~vs~a~----~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAP----ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNS-PGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             -EEEEEEET----TTTEEEEEETTS-EEEEEEEE------------------S--GGGS-S-SEEE-GGG--TT-SEEEE
T ss_pred             eEEEEEecC----CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCC-CcceEEehhhCCcccccccC
Confidence            588999999    77889999999999999876532211      000       0000 111111            23


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      +...+....++|++++.+.-|   +++.|+.+|.+.|.|+|.. .......+..+..                .......
T Consensus        78 P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGP-avI~~~~i~~~~~----------------~~~~~~~  137 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGP-AVIYNENIRESFL----------------SKSSSSY  137 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-----------------SS----
T ss_pred             chhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCC-eEEeecccccccc----------------ccccccC
Confidence            344455568999999998666   8999999999999998632 1111111111000                0000112


Q ss_pred             ceeEEEcC-----CC---CeEEEecCCCeEEEEecC-C--Cc----EEEEeecCCcceEEEE-EcCC-C-----------
Q 023643          162 NNAIAVDP-----QG---GAIFSAAGDSCAYCWDVE-S--SR----IKMVFKGHSDYLHCIV-ARNS-T-----------  213 (279)
Q Consensus       162 i~~~~~~~-----~~---~~l~~~~~d~~i~i~d~~-~--~~----~~~~~~~~~~~i~~i~-~~~~-~-----------  213 (279)
                      ++++.|..     |+   -.+++|++.|.+.+|.+. .  +.    .......+.++|..|. ++.+ |           
T Consensus       138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~  217 (395)
T PF08596_consen  138 VTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQ  217 (395)
T ss_dssp             EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH
T ss_pred             eeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh
Confidence            56666652     33   378899999999999875 1  21    1122223556666654 3211 1           


Q ss_pred             --------cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc-----CCCCEEEEEcCcceEEeCC
Q 023643          214 --------NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-----ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       214 --------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~~wd  279 (279)
                              +-++....+..++++.+.+.+...+..        ........+++-     ..+..|++-..+|.+++|+
T Consensus       218 ~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S  288 (395)
T PF08596_consen  218 GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS  288 (395)
T ss_dssp             GGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred             ccccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence                    123333457789999998888776652        222233334442     3566788888999998874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=2e-05  Score=65.61  Aligned_cols=143  Identities=14%  Similarity=0.101  Sum_probs=93.9

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC---CCceEEEEeeCCCcE
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG---NEDALLLSCGDDGRI  116 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i  116 (279)
                      +|.++++++.||+|.|-.+.+.                   +....+. -..++.+++++|+   .....+++||..| +
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~-------------------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-l  140 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTD-------------------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-L  140 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCC-------------------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-E
Confidence            6999999999999999998873                   3333332 3467999999997   1113799999999 7


Q ss_pred             EEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE
Q 023643          117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV  196 (279)
Q Consensus       117 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  196 (279)
                      .++.-+-....... ..                      ....+.|.++.|.  |+++|-+..+| |++||+.+.+.+..
T Consensus       141 vL~er~wlgnk~~v-~l----------------------~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~  194 (846)
T KOG2066|consen  141 VLSERNWLGNKDSV-VL----------------------SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN  194 (846)
T ss_pred             EEehhhhhcCccce-ee----------------------ecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec
Confidence            77653211111111 00                      1112348999996  56888887666 89999998888777


Q ss_pred             eecCCcc------eEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          197 FKGHSDY------LHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       197 ~~~~~~~------i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      ++.....      ...+.|.++ ..|+.| ..-+|+|..++
T Consensus       195 i~~p~~~~R~e~fpphl~W~~~-~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  195 IPPPSQSVRPELFPPHLHWQDE-DRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             cCCCCCCCCcccCCCceEecCC-CeEEEe-cCCeEEEEEEe
Confidence            6543333      235667654 445555 44568888777

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=8.3e-05  Score=64.94  Aligned_cols=196  Identities=11%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC-CcccccccCCcccceeee-
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC-ISKLPLGLSNSKVQQLLG-   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~-   79 (279)
                      +|.|.+=|+.+....+   ...-...|.+++|+|    |++.++..+..+++.+-.-.-. ..+..+........+... 
T Consensus        89 ~G~iilvd~et~~~ei---vg~vd~GI~aaswS~----Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V  161 (1265)
T KOG1920|consen   89 LGDIILVDPETLELEI---VGNVDNGISAASWSP----DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV  161 (1265)
T ss_pred             CCcEEEEcccccceee---eeeccCceEEEeecC----CCcEEEEEeCCcEEEEEeccccchhcccccccccccccccee
Confidence            4666666665543322   223357899999999    9999999988888766543110 000011000000000000 


Q ss_pred             --ccccccccCCc---------------------cCeEEEEecCCCCceEEEEee----CC-CcEEEeecCCCccCccee
Q 023643           80 --IEPDGFLHGHD---------------------GPAYDVKFYGGNEDALLLSCG----DD-GRICGWRWKEFTESKVPI  131 (279)
Q Consensus        80 --~~~~~~~~~h~---------------------~~v~~~~~~~~~~~~~l~s~~----~d-g~i~iw~~~~~~~~~~~~  131 (279)
                        ++....+++..                     +.=++|+|--+|+  ++++..    .+ ..|++||-+ +.-.....
T Consensus       162 GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~RkirV~drE-g~Lns~se  238 (1265)
T KOG1920|consen  162 GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTRKIRVYDRE-GALNSTSE  238 (1265)
T ss_pred             cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCceeEEEeccc-chhhcccC
Confidence              11111121111                     1124589999998  888732    23 789999954 10000000


Q ss_pred             eeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe---cCCCeEEEEecCCCcEEEE----eecCCcce
Q 023643          132 NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA---AGDSCAYCWDVESSRIKMV----FKGHSDYL  204 (279)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~----~~~~~~~i  204 (279)
                      ...+                         .-.+++|-|.|..+++-   ++|+.|.++.- +|..-..    +......+
T Consensus       239 ~~~~-------------------------l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  239 PVEG-------------------------LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             cccc-------------------------cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccch
Confidence            0000                         12589999999988875   34667889874 3433322    23334458


Q ss_pred             EEEEEcCCCcEEEE---ecCCCeEEEEeCCCC
Q 023643          205 HCIVARNSTNQIVT---GSEDGTARIWDCKSG  233 (279)
Q Consensus       205 ~~i~~~~~~~~l~~---~~~d~~i~vwd~~~~  233 (279)
                      ..++|+.++..|+.   ......|++|-+.+-
T Consensus       293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             heeeecCCCCceeeeecccccceEEEEEecCe
Confidence            99999999998887   444555999987664

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.43  E-value=8.7e-06  Score=66.72  Aligned_cols=151  Identities=12%  Similarity=0.060  Sum_probs=97.3

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      +...|.--+++.    .+++++.|++-|.+.+|+-..+.                  -......+-.+.+..++.+++..
T Consensus        32 ~~~~v~lTc~ds----t~~~l~~GsS~G~lyl~~R~~~~------------------~~~~~~~~~~~~~~~~~vs~~e~   89 (726)
T KOG3621|consen   32 FPARVKLTCVDA----TEEYLAMGSSAGSVYLYNRHTGE------------------MRKLKNEGATGITCVRSVSSVEY   89 (726)
T ss_pred             CcceEEEEEeec----CCceEEEecccceEEEEecCchh------------------hhcccccCccceEEEEEecchhH
Confidence            344555556666    78999999999999999988642                  11122223445566677888876


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        ++|.|+..|.|.++.++.............+.                   .+...|++++|++++..+++|...|.|
T Consensus        90 --lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~-------------------~~~~rVTal~Ws~~~~k~ysGD~~Gkv  148 (726)
T KOG3621|consen   90 --LVAAGTASGRVSVFQLNKELPRDLDYVTPCDK-------------------SHKCRVTALEWSKNGMKLYSGDSQGKV  148 (726)
T ss_pred             --hhhhhcCCceEEeehhhccCCCcceeeccccc-------------------cCCceEEEEEecccccEEeecCCCceE
Confidence              88889999999999886532222211111111                   012248999999999999999999999


Q ss_pred             EEEecCCC----cEEEEeecCCcceEEEEEcCCCcEEEE
Q 023643          184 YCWDVESS----RIKMVFKGHSDYLHCIVARNSTNQIVT  218 (279)
Q Consensus       184 ~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~  218 (279)
                      ..-.+.+.    -..+.+..-.+.|-.+.+. ++..|++
T Consensus       149 ~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS  186 (726)
T KOG3621|consen  149 VLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS  186 (726)
T ss_pred             EEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence            99888762    1112222334566666654 3333443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=2.9e-06  Score=68.56  Aligned_cols=92  Identities=15%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceE-EEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH-CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++..|...++ +++|.|||+.|+.|-.||+|++.|..++..+....
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~  101 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL  101 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence            6788999999999999999999999988 778888887777777 99999999999999999999999999998887742


Q ss_pred             CCccccccCcceeeeEEEEcC
Q 023643          241 PVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~  261 (279)
                             ......|+++-|+|
T Consensus       102 -------~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  102 -------FSVETDISKGIWDR  115 (665)
T ss_pred             -------cccccchheeeccc
Confidence                   23345677777763

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.37  E-value=0.00075  Score=54.56  Aligned_cols=193  Identities=13%  Similarity=0.123  Sum_probs=98.7

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      .|+||+..+.   .+.......+.+.++.|+.    + ..|++...||.+++||+....   .+..          +..+
T Consensus        62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~----~-e~LvvV~~dG~v~vy~~~G~~---~fsl----------~~~i  120 (410)
T PF04841_consen   62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTD----D-EELVVVQSDGTVRVYDLFGEF---QFSL----------GEEI  120 (410)
T ss_pred             EEEEECCCCC---EeEEEEECCCCEEEEEECC----C-CeEEEEEcCCEEEEEeCCCce---eech----------hhhc
Confidence            4888998874   3444444448999999988    4 455566799999999987422   1110          1111


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      ....-....+....+..+|-  .+++.  ++.+.+-+  ............. ...            .+..........
T Consensus       121 ~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~--n~~~~~~~~~~~~-~p~------------~~~~~~~~~~~~  181 (410)
T PF04841_consen  121 EEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVN--NIDEPVKLRRLPE-IPG------------LWTKFHWWPSWT  181 (410)
T ss_pred             cccCcccccccccccCCCCE--EEECC--CCeEEEEe--Cccccchhhcccc-CCC------------cccccccccccc
Confidence            11111222233333443442  33332  33343322  2211100000000 000            000000000001


Q ss_pred             e-EEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          164 A-IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       164 ~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      . ..++.+....+....++.+.+.+....+.   +. ..+++..|+.||+++++|.-..+|.+.+....-.+....+.
T Consensus       182 ~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  182 VIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             cceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            1 23444455555555556666554332211   22 34689999999999999999999999998866666665554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=8.4e-06  Score=68.44  Aligned_cols=109  Identities=10%  Similarity=0.103  Sum_probs=84.9

Q ss_pred             EEEEecCCCCceEEEEeeC----CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643           94 YDVKFYGGNEDALLLSCGD----DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP  169 (279)
Q Consensus        94 ~~~~~~~~~~~~~l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  169 (279)
                      +-.+|+|..+  +|+.++.    .|+|.||-- ++.       ++.+...|+                   .+++++|+|
T Consensus        19 ti~SWHPseP--lfAVA~fS~er~GSVtIfad-tGE-------Pqr~Vt~P~-------------------hatSLCWHp   69 (1416)
T KOG3617|consen   19 TISSWHPSEP--LFAVASFSPERGGSVTIFAD-TGE-------PQRDVTYPV-------------------HATSLCWHP   69 (1416)
T ss_pred             cccccCCCCc--eeEEEEecCCCCceEEEEec-CCC-------CCcccccce-------------------ehhhhccCh
Confidence            4467999988  8887764    477777742 111       111222222                   267899999


Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      ..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.+.+|.+.
T Consensus        70 e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   70 EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            88888988888999999988877777777899999999999999999999999999999876

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.29  E-value=0.00026  Score=52.89  Aligned_cols=186  Identities=13%  Similarity=0.099  Sum_probs=97.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.+..||.++++.  +..... .+++..... .    .+..+++++.++.|..+|..+++.                  
T Consensus        45 ~~~l~~~d~~tG~~--~W~~~~-~~~~~~~~~-~----~~~~v~v~~~~~~l~~~d~~tG~~------------------   98 (238)
T PF13360_consen   45 DGNLYALDAKTGKV--LWRFDL-PGPISGAPV-V----DGGRVYVGTSDGSLYALDAKTGKV------------------   98 (238)
T ss_dssp             TSEEEEEETTTSEE--EEEEEC-SSCGGSGEE-E----ETTEEEEEETTSEEEEEETTTSCE------------------
T ss_pred             CCEEEEEECCCCCE--EEEeec-cccccceee-e----cccccccccceeeeEecccCCcce------------------
Confidence            56777888766543  222221 111111111 1    456667777888999999888532                  


Q ss_pred             ccccc-cCCc---cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCc---ccceEEeecCCCCCccc
Q 023643           82 PDGFL-HGHD---GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNH---VKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        82 ~~~~~-~~h~---~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  154 (279)
                       +-.. ....   ...........+.  .++.+..++.|..+|++++..   ........   ...+..+          
T Consensus        99 -~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~----------  162 (238)
T PF13360_consen   99 -LWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSF----------  162 (238)
T ss_dssp             -EEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEE----------
T ss_pred             -eeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeee----------
Confidence             2221 1110   0111111121244  788888899999999875422   11111110   0000000          


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                           ..+..-....++ .++.++.++.+..+|+.+++.+....  ...+..+ ..+.+..|+.++.++.|..||+++|+
T Consensus       163 -----~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  163 -----SDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             -----TTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             -----cccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence                 001111222234 77777777754434999998665333  2222221 33567777777799999999999998


Q ss_pred             eEEE
Q 023643          235 CIKV  238 (279)
Q Consensus       235 ~~~~  238 (279)
                      .+.+
T Consensus       234 ~~W~  237 (238)
T PF13360_consen  234 VVWQ  237 (238)
T ss_dssp             EEEE
T ss_pred             EEeE
Confidence            7653

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.25  E-value=0.00019  Score=58.16  Aligned_cols=146  Identities=12%  Similarity=0.093  Sum_probs=82.2

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      .+.........+.++|    +++.+++ +.||.-.|+.....                   +.     ...+......|.
T Consensus        27 ~lg~~~~~p~~ls~np----ngr~v~V-~g~geY~iyt~~~~-------------------r~-----k~~G~g~~~vw~   77 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNP----NGRFVLV-CGDGEYEIYTALAW-------------------RN-----KAFGSGLSFVWS   77 (443)
T ss_dssp             EEEE-SS--SEEEE-T----TSSEEEE-EETTEEEEEETTTT-------------------EE-----EEEEE-SEEEE-
T ss_pred             cCCCCCcCCeeEEECC----CCCEEEE-EcCCEEEEEEccCC-------------------cc-----cccCceeEEEEe
Confidence            3444445678999999    8998888 56778888874331                   11     123445678899


Q ss_pred             CCCCceEEEEeeCCCcEEEee-cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643          100 GGNEDALLLSCGDDGRICGWR-WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      +.+   .+|+-...+.|.|+. ++.. .. ....+.. .                        +..+-  + |.+|...+
T Consensus        78 ~~n---~yAv~~~~~~I~I~kn~~~~-~~-k~i~~~~-~------------------------~~~If--~-G~LL~~~~  124 (443)
T PF04053_consen   78 SRN---RYAVLESSSTIKIYKNFKNE-VV-KSIKLPF-S------------------------VEKIF--G-GNLLGVKS  124 (443)
T ss_dssp             TSS---EEEEE-TTS-EEEEETTEE--TT------SS--------------------------EEEEE----SSSEEEEE
T ss_pred             cCc---cEEEEECCCeEEEEEcCccc-cc-eEEcCCc-c------------------------cceEE--c-CcEEEEEC
Confidence            854   577777789999963 3211 00 0111110 0                        12221  1 77777666


Q ss_pred             CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      . +.|.+||..+++.++.+...  +|..+.|++++.+++..+.+ .+.|++..
T Consensus       125 ~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  125 S-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             T-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             C-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            4 48999999999999998733  48999999999999988755 57776643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=98.25  E-value=5.7e-06  Score=41.82  Aligned_cols=39  Identities=23%  Similarity=0.543  Sum_probs=34.6

Q ss_pred             CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       191 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      +++...+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.25  E-value=0.00022  Score=57.50  Aligned_cols=166  Identities=17%  Similarity=0.153  Sum_probs=95.6

Q ss_pred             cccceEEEEECCCCCCCCCEEEEec---CC-CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIAS---SD-GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      ....+..-+|+|    ++..++-..   .. ..+.+++++++.                 ...+..+.++.   ..-+|+
T Consensus       191 ~~~~~~~p~ws~----~~~~~~y~~f~~~~~~~i~~~~l~~g~-----------------~~~i~~~~g~~---~~P~fs  246 (425)
T COG0823         191 SGSLILTPAWSP----DGKKLAYVSFELGGCPRIYYLDLNTGK-----------------RPVILNFNGNN---GAPAFS  246 (425)
T ss_pred             cCcceeccccCc----CCCceEEEEEecCCCceEEEEeccCCc-----------------cceeeccCCcc---CCccCC
Confidence            345677788998    777665542   22 358889998753                 22223344443   356799


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      |+++ .++++...||...||-++.....  ...+.....                      .-..=.|+|+|+.++-.+.
T Consensus       247 pDG~-~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~g----------------------i~~~Ps~spdG~~ivf~Sd  301 (425)
T COG0823         247 PDGS-KLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFG----------------------INTSPSWSPDGSKIVFTSD  301 (425)
T ss_pred             CCCC-EEEEEECCCCCccEEEEcCCCCc--ceecccCCc----------------------cccCccCCCCCCEEEEEeC
Confidence            9998 56667777887666654322111  111110000                      0123478999997766543


Q ss_pred             -CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-Ce--EEEEeCCCCceEEEe
Q 023643          180 -DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-GT--ARIWDCKSGKCIKVI  239 (279)
Q Consensus       180 -d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~--i~vwd~~~~~~~~~~  239 (279)
                       .|  .|.++|.+.+...+ +......-..-.++|+|++|+..+.. |.  |.+.|+.++...+.+
T Consensus       302 r~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         302 RGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             CCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence             34  47777777655433 32222222266789999998877643 44  777777666544443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00033  Score=58.17  Aligned_cols=105  Identities=14%  Similarity=0.089  Sum_probs=70.2

Q ss_pred             ceeEEEcCCCCeEEEecC-CCeEEEEecCCCcE------------EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          162 NNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRI------------KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                      ...+.++|||+++++++. +.++.++|+.+.+.            +.+.+-- ......+|.++|+.+.+-..|..|..|
T Consensus       323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kw  401 (635)
T PRK02888        323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKW  401 (635)
T ss_pred             ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEE
Confidence            468899999998877654 88999999987542            3333322 234567899999988889999999999


Q ss_pred             eCCC----------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          229 DCKS----------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       229 d~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ++..          ...+.++..+-+   .+|.....+=.-.|+|++|++..
T Consensus       402 n~~~a~~~~~g~~~~~v~~k~dV~y~---pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        402 NIEAAIRAYKGEKVDPIVQKLDVHYQ---PGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             ehHHHHHHhccccCCcceecccCCCc---cceeeecCCCcCCCCCCEEEEcc
Confidence            9876          234444433221   34433333333467777777653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.19  E-value=2.1e-05  Score=64.58  Aligned_cols=109  Identities=11%  Similarity=0.133  Sum_probs=81.6

Q ss_pred             EEcCCCCeEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE-ecCCc
Q 023643          166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV-IDPVK  243 (279)
Q Consensus       166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~  243 (279)
                      +++..+++++.|+.-|.+++|+-..++... ...+..+.+..+..+++..++|.|+..|.|.++-+..+.+... +-.+.
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            455678899999999999999976554332 2333455666778888899999999999999998876432211 11111


Q ss_pred             cccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          244 DKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      +   ..|...|++++|++++..+++|...|+|..
T Consensus       120 d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen  120 D---KSHKCRVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             c---ccCCceEEEEEecccccEEeecCCCceEEE
Confidence            1   357889999999999999999999998764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.19  E-value=0.0011  Score=53.61  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=59.4

Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV  250 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  250 (279)
                      +..+++++.++.+..+|..+++.+......  ....+..  .+..++.++.+|.+..+|..+|+.+......      ..
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~------~~  325 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL------LH  325 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc------CC
Confidence            456777788999999999999887665421  1112222  4667777889999999999999876554211      00


Q ss_pred             ceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          251 ISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                       ....+...  .+.+|+.++.+|.+...
T Consensus       326 -~~~~sp~v--~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        326 -RLLTAPVL--YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             -CcccCCEE--ECCEEEEEeCCCEEEEE
Confidence             01111111  14456666777776654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.18  E-value=0.00043  Score=43.83  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=67.6

Q ss_pred             ceeEEEc---CCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          162 NNAIAVD---PQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       162 i~~~~~~---~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      |+++++.   .+| +.|++|+.|..|++|+-  .+.+.++.. .+.|.+++-... ..++.+..+|+|-+|+-  .+.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence            3455544   333 48999999999999984  467777763 456777776654 67888999999999985  34444


Q ss_pred             EecCCccccccCcceeeeEEE-EcCCC---CEEEEEcCcceEEe
Q 023643          238 VIDPVKDKQLKGVISCVSCIT-LDASE---SWLVRVRATNYVIL  277 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~-~~~~~---~~l~~~~~d~~i~~  277 (279)
                      .++        .. ..+.+++ ++.++   +-|++|-.+|.|-+
T Consensus        76 RiK--------SK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIK--------SK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eec--------cC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            442        11 2244554 44433   46899988888753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.18  E-value=0.00091  Score=54.09  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=64.6

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      .+..++.++.++.+..+|..+++.+.....-... ......  .+.+|+.++.+|.|.+.|..+|+.+...+..      
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~------  364 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD------  364 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC------
Confidence            3567888888999999999999877654321111 111111  2567888899999999999999988876421      


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          249 GVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                       .........+  .+..|+.++.||.+..+
T Consensus       365 -~~~~~s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        365 -SSGFLSEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             -CCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence             1111111222  24578888999988765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.00033  Score=56.78  Aligned_cols=136  Identities=14%  Similarity=0.088  Sum_probs=74.9

Q ss_pred             CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643           89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus        89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      ..-....+.++|++.  +++. ..||...|+.....   ....  .+                         .-....|.
T Consensus        31 ~~~~p~~ls~npngr--~v~V-~g~geY~iyt~~~~---r~k~--~G-------------------------~g~~~vw~   77 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGR--FVLV-CGDGEYEIYTALAW---RNKA--FG-------------------------SGLSFVWS   77 (443)
T ss_dssp             -SS--SEEEE-TTSS--EEEE-EETTEEEEEETTTT---EEEE--EE-------------------------E-SEEEE-
T ss_pred             CCcCCeeEEECCCCC--EEEE-EcCCEEEEEEccCC---cccc--cC-------------------------ceeEEEEe
Confidence            444578899999997  6666 55788888873211   1111  11                         12577899


Q ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      + .+.+++-.....|.++.--+.+....++.. ..+..|-.   |..|+..+.+ .|.+||..+++.+..+..       
T Consensus        78 ~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-------  144 (443)
T PF04053_consen   78 S-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-------  144 (443)
T ss_dssp             T-SSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-------
T ss_pred             c-CccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-------
Confidence            8 445777777888999732222222233321 12333322   7777766544 899999999999999842       


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          249 GVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                         .+|..+.|++++.+++..+.+.
T Consensus       145 ---~~vk~V~Ws~~g~~val~t~~~  166 (443)
T PF04053_consen  145 ---SAVKYVIWSDDGELVALVTKDS  166 (443)
T ss_dssp             ----E-EEEEE-TTSSEEEEE-S-S
T ss_pred             ---CCCcEEEEECCCCEEEEEeCCe
Confidence               1488999999999999887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=6.4e-06  Score=63.07  Aligned_cols=88  Identities=8%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      +++.+..+.+...-+..+...|+.++|+|..+ ++..++.+..|+|.|+++...+..+        ..+ ..+++++|+.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy--------~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY--------IAY-NQIWSCCWDL  245 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe--------ecc-CCceeeeecc
Confidence            66676666666666667888999999999755 7889999999999999999888877        344 6899999998


Q ss_pred             CC-CEEEEEcCcceEEeCC
Q 023643          262 SE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       262 ~~-~~l~~~~~d~~i~~wd  279 (279)
                      |. ++|.+|-..|.|.+||
T Consensus       246 de~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             CCcceeEEeccCceEEEEE
Confidence            64 6788888999999987

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.13  E-value=0.00021  Score=57.05  Aligned_cols=224  Identities=13%  Similarity=0.084  Sum_probs=106.4

Q ss_pred             eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc--cc-CCccCeEEEEe
Q 023643           22 EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF--LH-GHDGPAYDVKF   98 (279)
Q Consensus        22 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~~~~   98 (279)
                      ....++|++++.|.     =-++|+|..+|.+.|.|++...-..              ...+..  .. .....++++.|
T Consensus        83 ~~~~g~vtal~~S~-----iGFvaigy~~G~l~viD~RGPavI~--------------~~~i~~~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-----IGFVAIGYESGSLVVIDLRGPAVIY--------------NENIRESFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             ---S-SEEEEEE-B-----TSEEEEEETTSEEEEEETTTTEEEE--------------EEEGGG--T-SS----EEEEEE
T ss_pred             eccCCcEeEEecCC-----CcEEEEEecCCcEEEEECCCCeEEe--------------eccccccccccccccCeeEEEE
Confidence            34478999999975     5799999999999999997632111              111111  11 23456778888


Q ss_pred             cC---CCCc---eEEEEeeCCCcEEEeecCCCccCcceeeecc---CcccceEE---eecCCCCCccccCCCCCCceeEE
Q 023643           99 YG---GNED---ALLLSCGDDGRICGWRWKEFTESKVPINLQG---NHVKPVLD---LVNHQHKGPWGALSPVPENNAIA  166 (279)
Q Consensus        99 ~~---~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~  166 (279)
                      ..   .+++   -.++.|...|.+.+|.+-..........+.+   ....++..   +.............   .+..+.
T Consensus       144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~---~~~~l~  220 (395)
T PF08596_consen  144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS---AMQGLS  220 (395)
T ss_dssp             EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH---HHHGGG
T ss_pred             EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh---Hhhccc
Confidence            62   2211   3788899999999998742111111111111   11111111   10000000000000   000000


Q ss_pred             EcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEc-----CCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVAR-----NSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       167 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      =...-+.+++...+..++++...+.+..+......-....+.+-     ..+..|++-..+|.|++|.+..-+.+..+..
T Consensus       221 ~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  221 KGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             GT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             cCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            00001224444557889999998887766554222222333442     2467788888999999999999988888764


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ..    ......+....++++|..++-.+.
T Consensus       301 ~~----~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  301 PP----PLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             SS-------HHHHTT-EE-TTS-EEEE-SS
T ss_pred             CC----ccccccccccEECCCCCEEEEeCc
Confidence            32    222334556678888987766544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=98.09  E-value=1.6e-05  Score=40.03  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          248 KGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            56777899999999999999999999999997

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.05  E-value=0.00083  Score=42.57  Aligned_cols=68  Identities=10%  Similarity=0.056  Sum_probs=49.1

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      |++|++..-.....+.|++|+.|..||+|+-..                     .+..+. -.+.|.+++-...+   .|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------------------~~~Ei~-e~~~v~~L~~~~~~---~F   56 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------------------IVAEIT-ETDKVTSLCSLGGG---RF   56 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------------------EEEEEe-cccceEEEEEcCCC---EE
Confidence            677777663222336899999999999999764                     223333 24567888777664   79


Q ss_pred             EEeeCCCcEEEee
Q 023643          108 LSCGDDGRICGWR  120 (279)
Q Consensus       108 ~s~~~dg~i~iw~  120 (279)
                      +-+-.+|+|-+|+
T Consensus        57 ~Y~l~NGTVGvY~   69 (111)
T PF14783_consen   57 AYALANGTVGVYD   69 (111)
T ss_pred             EEEecCCEEEEEe
Confidence            9999999999997

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.03  E-value=0.00094  Score=48.83  Aligned_cols=71  Identities=17%  Similarity=0.069  Sum_probs=57.8

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      -|.+++.|+..|.+++.+..+|+....+.....-=......+++..+..|+.|++.+..|.++..++...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            36679999999999999999998888876443322233456789999999999999999999998888763

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.00  E-value=0.0018  Score=53.95  Aligned_cols=98  Identities=9%  Similarity=-0.013  Sum_probs=67.2

Q ss_pred             CCCeEEEecCCCeEEEEecCC-----CcEEEEeecCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCCCCce--------
Q 023643          170 QGGAIFSAAGDSCAYCWDVES-----SRIKMVFKGHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCKSGKC--------  235 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~--------  235 (279)
                      +|++...  .++.|.+.|..+     .+.+..+. -......++++|||+++++++ .+.++.|.|+.+.+.        
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            4554444  256799999887     34555444 334567899999999866554 599999999987553        


Q ss_pred             ----EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 ----IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                          ....+        - ...-...+|+++|....|-.-|..|..|+
T Consensus       364 ~~~vvaeve--------v-GlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        364 RDAVVAEPE--------L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             cceEEEeec--------c-CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence                22221        1 11223568999998777888899998886

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.97  E-value=0.0033  Score=50.96  Aligned_cols=40  Identities=10%  Similarity=0.034  Sum_probs=30.4

Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWK  122 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  122 (279)
                      ++++..+.-..+.+.++.|..+.   .|+....||.++++|+.
T Consensus        70 G~ll~~i~w~~~~iv~~~wt~~e---~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   70 GKLLSSIPWDSGRIVGMGWTDDE---ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEeEEEEECCCCEEEEEECCCC---eEEEEEcCCEEEEEeCC
Confidence            44555554444889999999865   57788899999999975

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.95  E-value=0.00035  Score=60.02  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=91.7

Q ss_pred             CCCEEEE-ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccC-eEEEEecCCCC-----ceEEEEeeC
Q 023643           40 SPDTIVI-ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGP-AYDVKFYGGNE-----DALLLSCGD  112 (279)
Q Consensus        40 ~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-----~~~l~s~~~  112 (279)
                      +.++|+. ......|+-.|++.                   ++.+..+..|... |.  .+.|+.+     ...-+.|-.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~-------------------GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls  550 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLER-------------------GKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLS  550 (794)
T ss_pred             ccceEeecCCCCCceEEEecCC-------------------CcEEEEeecCCCccee--EecccccccccCCCceEEEEC
Confidence            3344433 33456777777777                   5666667665543 44  3444321     124556667


Q ss_pred             CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc
Q 023643          113 DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR  192 (279)
Q Consensus       113 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  192 (279)
                      +..+..||+|-.. .+.. ....+.                  +......+|++-+.+| +||+|+.+|.||+||-...+
T Consensus       551 ~n~lfriDpR~~~-~k~v-~~~~k~------------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~  609 (794)
T PF08553_consen  551 DNSLFRIDPRLSG-NKLV-DSQSKQ------------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR  609 (794)
T ss_pred             CCceEEeccCCCC-Ccee-eccccc------------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh
Confidence            8889999988432 1111 101100                  0111124677766655 78999999999999954444


Q ss_pred             EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          193 IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       193 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      ....+.+-..+|.+|..+.||++|++.+ +..|-+++.
T Consensus       610 AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  610 AKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             hhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            4455667788999999999999988776 555666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=7.9e-05  Score=60.61  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=62.3

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE-EEEecCCCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY-DVKFYGGNE  103 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~  103 (279)
                      ...|.-+.|+|    .-.++|.+..+|.|-+..++-                    +.+-++.-|..+++ +++|.|+|+
T Consensus        20 ~~~i~~~ewnP----~~dLiA~~t~~gelli~R~n~--------------------qRlwtip~p~~~v~~sL~W~~DGk   75 (665)
T KOG4640|consen   20 PINIKRIEWNP----KMDLIATRTEKGELLIHRLNW--------------------QRLWTIPIPGENVTASLCWRPDGK   75 (665)
T ss_pred             ccceEEEEEcC----ccchhheeccCCcEEEEEecc--------------------ceeEeccCCCCccceeeeecCCCC
Confidence            45788899999    899999999999998888873                    44555665666677 999999998


Q ss_pred             ceEEEEeeCCCcEEEeecCCC
Q 023643          104 DALLLSCGDDGRICGWRWKEF  124 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~  124 (279)
                        .|+.|-.||+|++.|.+.+
T Consensus        76 --llaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   76 --LLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             --EEEEEecCCeEEEEEccCC
Confidence              9999999999999998754

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.89  E-value=5.4e-05  Score=53.93  Aligned_cols=104  Identities=12%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .++.|+.+|.|.+|+.+...............   +                    ...+.-..++.+..+++.++.|+.
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~---i--------------------~~~Ip~~~~~~~~c~~~~dg~ir~  128 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES---I--------------------DLGIPNGRDSSLGCVGAQDGRIRA  128 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhccccc---c--------------------eeccccccccceeEEeccCCceee
Confidence            79999999999999976221110000000000   0                    112222234558889999999999


Q ss_pred             EecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEe--cCCCeEEEEeCCC
Q 023643          186 WDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTG--SEDGTARIWDCKS  232 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~~  232 (279)
                      |++.-.+.+...-.|. .++........++.++.+  |.|..++.|++..
T Consensus       129 ~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  129 CNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9998777777666666 455555555566666666  6777777777654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.00024  Score=56.88  Aligned_cols=146  Identities=12%  Similarity=0.007  Sum_probs=92.3

Q ss_pred             EEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE-----EEeeCCCcEEE
Q 023643           44 IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-----LSCGDDGRICG  118 (279)
Q Consensus        44 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~i  118 (279)
                      |.++.....|+-.|++.                   ++.+..++-|.. |+-+.+.|+.+...|     +.|=.|..|.-
T Consensus       349 l~~~~~~~~l~klDIE~-------------------GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr  408 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIER-------------------GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFR  408 (644)
T ss_pred             eeCCCCcCcceeeeccc-------------------ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEE
Confidence            34455556677777776                   666677776665 777788887653333     23445788888


Q ss_pred             eecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643          119 WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       119 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  198 (279)
                      ||++-. ....+...+++....-.                  .-.|.+-..+ .++++|+.+|.|++||-...+....+.
T Consensus       409 iDpRv~-~~~kl~~~q~kqy~~k~------------------nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlP  468 (644)
T KOG2395|consen  409 IDPRVQ-GKNKLAVVQSKQYSTKN------------------NFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALP  468 (644)
T ss_pred             eccccc-Ccceeeeeecccccccc------------------ccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhccc
Confidence            998732 11111122221111100                  1245554444 479999999999999974444555677


Q ss_pred             cCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          199 GHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       199 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      +-..+|..|..+.+|++|+..+ +..+-+-++
T Consensus       469 gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  469 GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            8889999999999999988665 555666554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=2.2e-05  Score=66.39  Aligned_cols=153  Identities=12%  Similarity=0.125  Sum_probs=103.1

Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .+..++++.|...-+|++|+...+  .|+.|+..|.|+++++.++..   ......|                      .
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~--hL~vG~~~Geik~~nv~sG~~---e~s~ncH----------------------~ 1143 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN--HLAVGSHAGEIKIFNVSSGSM---EESVNCH----------------------Q 1143 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCc--eEEeeeccceEEEEEccCccc---ccccccc----------------------c
Confidence            566778888999999999999887  999999999999999865422   1222221                      1


Q ss_pred             CCceeEEEcCCCCeEEEecCCC--eEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDS--CAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      .+|+-+.-+.+|..+++.+.-.  ..-+|++.+ +.++++|...    .++.|+.....-+.|..-....+||+.++..+
T Consensus      1144 SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1144 SAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             cccccccccCCcceeeeeccccCchHHHhccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            2356666677888666654433  467899864 5566666532    46788776555555666667899999999887


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEE
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLV  267 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  267 (279)
                      .++-...    .+..-.-++..|+|+..+++
T Consensus      1220 ~tylt~~----~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1220 QTYLTDT----VTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HHhcCcc----hhhhhhccccccCCCcceEe
Confidence            7742211    12222236778999877664

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.82  E-value=0.0023  Score=50.18  Aligned_cols=175  Identities=11%  Similarity=0.127  Sum_probs=96.0

Q ss_pred             Cceeeeccccc-----cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            3 GDSTNWDEDAY-----RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         3 G~v~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      |.|.++++...     +...+... ...++|++++-..     +. |+++. .+.|.+|++.....              
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~-----~~-lv~~~-g~~l~v~~l~~~~~--------------  119 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN-----GR-LVVAV-GNKLYVYDLDNSKT--------------  119 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET-----TE-EEEEE-TTEEEEEEEETTSS--------------
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC-----CE-EEEee-cCEEEEEEccCccc--------------
Confidence            77888887763     22333333 3478899988665     34 44433 36899999987420              


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                        ......+. ..-.+.++...  ++  +++.|.....+.++.++..  ......... ...+.                
T Consensus       120 --l~~~~~~~-~~~~i~sl~~~--~~--~I~vgD~~~sv~~~~~~~~--~~~l~~va~-d~~~~----------------  173 (321)
T PF03178_consen  120 --LLKKAFYD-SPFYITSLSVF--KN--YILVGDAMKSVSLLRYDEE--NNKLILVAR-DYQPR----------------  173 (321)
T ss_dssp             --EEEEEEE--BSSSEEEEEEE--TT--EEEEEESSSSEEEEEEETT--TE-EEEEEE-ESS-B----------------
T ss_pred             --chhhheec-ceEEEEEEecc--cc--EEEEEEcccCEEEEEEEcc--CCEEEEEEe-cCCCc----------------
Confidence              01111121 12256666655  44  8999999899998876431  111111111 11111                


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-------C--cEEEEeec-CCcceEEE---EEcC--CC------cEE
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-------S--RIKMVFKG-HSDYLHCI---VARN--ST------NQI  216 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~--~~~~~~~~-~~~~i~~i---~~~~--~~------~~l  216 (279)
                         .++++.+-++++.++++..+|.+.++....       +  +....... ....|+++   .+.|  .+      ..+
T Consensus       174 ---~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i  250 (321)
T PF03178_consen  174 ---WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQI  250 (321)
T ss_dssp             ---EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEE
T ss_pred             ---cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceE
Confidence               267888876667899999999999987752       1  22222222 23556776   4444  12      247


Q ss_pred             EEecCCCeEEEE
Q 023643          217 VTGSEDGTARIW  228 (279)
Q Consensus       217 ~~~~~d~~i~vw  228 (279)
                      +.++.+|.|.+.
T Consensus       251 ~~~T~~G~Ig~l  262 (321)
T PF03178_consen  251 LYGTVDGSIGVL  262 (321)
T ss_dssp             EEEETTS-EEEE
T ss_pred             EEEecCCEEEEE
Confidence            778889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.82  E-value=0.0034  Score=49.29  Aligned_cols=106  Identities=12%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCc-EEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKV  238 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~  238 (279)
                      |++++-- .+ .|+++. .+.|.+|++...+ ....-.. ....+.++...  +++++.|..-..+.++..+. .+.+..
T Consensus        91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~  165 (321)
T PF03178_consen   91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL  165 (321)
T ss_dssp             EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred             ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE
Confidence            5666554 33 455444 4889999998777 4443221 22355665554  67999999888888875543 332333


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +..      .....+++++.|-++++.++++..+|.+.++
T Consensus       166 va~------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  166 VAR------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             EEE------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             EEe------cCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence            321      2335578889988776789999999998875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.77  E-value=0.0021  Score=52.02  Aligned_cols=164  Identities=12%  Similarity=0.083  Sum_probs=89.5

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEE-ecCCCcEEEE--eCCCCCcccccccCCcccceeeecc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSDGSITSY--SIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +.+++++..+...+....   +.-...+|+|    ||+.|+- ...||...||  |+....                   
T Consensus       220 i~~~~l~~g~~~~i~~~~---g~~~~P~fsp----DG~~l~f~~~rdg~~~iy~~dl~~~~-------------------  273 (425)
T COG0823         220 IYYLDLNTGKRPVILNFN---GNNGAPAFSP----DGSKLAFSSSRDGSPDIYLMDLDGKN-------------------  273 (425)
T ss_pred             EEEEeccCCccceeeccC---CccCCccCCC----CCCEEEEEECCCCCccEEEEcCCCCc-------------------
Confidence            566777766554444444   3344568999    7776654 5567765555  555421                   


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                       ...+..-.+.-..-.|+|+|+ .+..+.+..|.-.||-.+...............                        
T Consensus       274 -~~~Lt~~~gi~~~Ps~spdG~-~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~------------------------  327 (425)
T COG0823         274 -LPRLTNGFGINTSPSWSPDGS-KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG------------------------  327 (425)
T ss_pred             -ceecccCCccccCccCCCCCC-EEEEEeCCCCCcceEEECCCCCceeEeeccCCC------------------------
Confidence             111222222222567999998 445566667777777654332222222222211                        


Q ss_pred             ceeEEEcCCCCeEEEecC-CCe--EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAG-DSC--AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE  221 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  221 (279)
                      -..-.|+|+|++++..+. +|.  |.+.|+.++...+.+. .......-.+.++++.+...+.
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            124578999998877664 343  6777776665444443 2223334456677776655443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.76  E-value=0.0047  Score=53.44  Aligned_cols=92  Identities=23%  Similarity=0.363  Sum_probs=63.8

Q ss_pred             eEEEecCCCeEEEEecCCCc--EEE-Eee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc
Q 023643          173 AIFSAAGDSCAYCWDVESSR--IKM-VFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~--~~~-~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                      ..+.|-.+..+..||.|-..  ++. ..+  .......|++-..+ .+||.|+.+|.||+|| +.|+..++.       +
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd-~~g~~AKT~-------l  614 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYD-RLGKRAKTA-------L  614 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeec-ccchhhhhc-------C
Confidence            45667778899999998642  222 111  12344667766554 5789999999999999 455443333       2


Q ss_pred             cCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          248 KGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      .+-..+|.+|..+.||++|++.+..-
T Consensus       615 p~lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  615 PGLGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             CCCCCCeeEEEecCCCcEEEEeecce
Confidence            56678999999999999988776543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.005  Score=45.87  Aligned_cols=149  Identities=11%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             EEEEecCCCCceEEEEeeCCCc-EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643           94 YDVKFYGGNEDALLLSCGDDGR-ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus        94 ~~~~~~~~~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      ..+.|+|..+ .-++.+-.=|+ ..++|.+............+.|.-                       -.=.|+|+|.
T Consensus        71 Hgi~~~p~~~-ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy-----------------------GHGvfs~dG~  126 (366)
T COG3490          71 HGIAFHPALP-RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY-----------------------GHGVFSPDGR  126 (366)
T ss_pred             CCeecCCCCc-ceEEEEecCCceEEEECCCCCcCcEEEecccCceee-----------------------cccccCCCCc
Confidence            3567777665 34555555555 347887654433333333332211                       1125899999


Q ss_pred             eEEEecCC-----CeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecC------------------CCeEEEE
Q 023643          173 AIFSAAGD-----SCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSE------------------DGTARIW  228 (279)
Q Consensus       173 ~l~~~~~d-----~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------d~~i~vw  228 (279)
                      +|+..-+|     |.|-+||.+.+ +.+.++..|.-....+.+.+||+.++.+..                  .-++.+.
T Consensus       127 ~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll  206 (366)
T COG3490         127 LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL  206 (366)
T ss_pred             EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence            99876544     78999999854 456678788777888999999999887642                  1123344


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      |..+|+.+.+...+.    ..+...|..++..+||..++.+-
T Consensus       207 d~atG~liekh~Lp~----~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         207 DAATGNLIEKHTLPA----SLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             eccccchhhhccCch----hhhhcceeeeeeCCCCcEEEEEE
Confidence            444555444433221    24556788889999888766553

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.70  E-value=0.0001  Score=52.54  Aligned_cols=101  Identities=10%  Similarity=0.134  Sum_probs=68.7

Q ss_pred             CCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEE-cCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          171 GGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVA-RNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      +..+++|+.+|.|++|.... +.....+..-...|.++.- -.++.+..+++.||.|+.|++.-++.+...        .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--------g  141 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--------G  141 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee--------c
Confidence            45789999999999998762 1111111222233433322 224668899999999999999888877776        4


Q ss_pred             Ccc-eeeeEEEEcCCCCEEEEE--cCcceEEeCC
Q 023643          249 GVI-SCVSCITLDASESWLVRV--RATNYVILFS  279 (279)
Q Consensus       249 ~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~~wd  279 (279)
                      .|+ .++.....+..++.++.+  |.|..++.|+
T Consensus       142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             cccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence            555 556666666677777777  7788888875

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.017  Score=44.68  Aligned_cols=99  Identities=15%  Similarity=0.164  Sum_probs=67.1

Q ss_pred             ceeEEEcCCCCeEEEecC-CCeEEEEecCC--C----c-EEEEeecCCcceEEEEEcCCCcEEEEecCCC-eEEEEeCCC
Q 023643          162 NNAIAVDPQGGAIFSAAG-DSCAYCWDVES--S----R-IKMVFKGHSDYLHCIVARNSTNQIVTGSEDG-TARIWDCKS  232 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~----~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~  232 (279)
                      -+.|+||||++.|+.+.. .+.|+-|++..  +    + ....+....+..-.++...+|++.+++-.+| .|.+|+.. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            478999999988877755 47888887752  1    1 1222223446667788888888876555554 89999987 


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEc-CCCCEEEEE
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVRV  269 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  269 (279)
                      |+++..+..        ....+++++|- |+.+.|...
T Consensus       244 G~l~~~i~l--------P~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         244 GKLLGEIKL--------PVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             CcEEEEEEC--------CCCCCccceEeCCCcCEEEEE
Confidence            999988843        33567888885 444544433

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.63  E-value=0.02  Score=48.59  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=59.6

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEE---EecCCCcE-E---EEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYC---WDVESSRI-K---MVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~~-~---~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      .|..+.|+|||..++... ++.|++   -....++. +   +.+. .-...+..+.|.+++.++ .+..++.-.+|.+.-
T Consensus       449 ~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        449 PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEec
Confidence            489999999999887765 477777   44444541 1   1122 223346789999988855 444445444554432


Q ss_pred             -CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643          233 -GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI  276 (279)
Q Consensus       233 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  276 (279)
                       |.....+..      ......+..++-+++  .|+.+..++.+.
T Consensus       527 DG~~~~~~~~------~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        527 DGSNSDALPS------RNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             CCccccccCC------CCccCceEEEecCCc--eEEEEcCCceEE
Confidence             222222111      123456777777763  355555666443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.63  E-value=0.0073  Score=45.04  Aligned_cols=169  Identities=14%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             cccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           85 FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        85 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      .+.+-...+.+|+|.|+.. .++++....+.|...+.+ + .......+.+..                       ....
T Consensus        16 ~l~g~~~e~SGLTy~pd~~-tLfaV~d~~~~i~els~~-G-~vlr~i~l~g~~-----------------------D~Eg   69 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTG-TLFAVQDEPGEIYELSLD-G-KVLRRIPLDGFG-----------------------DYEG   69 (248)
T ss_dssp             E-TT--S-EEEEEEETTTT-EEEEEETTTTEEEEEETT----EEEEEE-SS-S-----------------------SEEE
T ss_pred             ECCCccCCccccEEcCCCC-eEEEEECCCCEEEEEcCC-C-CEEEEEeCCCCC-----------------------Ccee
Confidence            3444455699999999866 366777777777776643 1 111111122210                       1467


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEecCCC------cEEEEee-----cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-
Q 023643          165 IAVDPQGGAIFSAAGDSCAYCWDVESS------RIKMVFK-----GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-  232 (279)
Q Consensus       165 ~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-  232 (279)
                      |++..++.++++.-.++.+.++++...      .....+.     .+...+-.++|+|.++.|+.+-...-..+|.++. 
T Consensus        70 I~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~  149 (248)
T PF06977_consen   70 ITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF  149 (248)
T ss_dssp             EEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred             EEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence            888877766666666899999988432      1112222     2445688999999877777777766667776653 


Q ss_pred             --CceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          233 --GKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       233 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                        ...+.................+++++++|. +++++.......+..+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  150 PGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             T-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             cCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence              222222111000001223345788999985 55666666666665543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.023  Score=45.78  Aligned_cols=167  Identities=13%  Similarity=0.136  Sum_probs=107.0

Q ss_pred             ceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      .-..++++|    ++..+.++..   ++++.+.|..+.                   ........-..+ ..+++.|+++
T Consensus       117 ~P~~~~~~~----~~~~vYV~n~~~~~~~vsvid~~t~-------------------~~~~~~~vG~~P-~~~a~~p~g~  172 (381)
T COG3391         117 GPVGLAVDP----DGKYVYVANAGNGNNTVSVIDAATN-------------------KVTATIPVGNTP-TGVAVDPDGN  172 (381)
T ss_pred             CCceEEECC----CCCEEEEEecccCCceEEEEeCCCC-------------------eEEEEEecCCCc-ceEEECCCCC
Confidence            556788999    6766655544   678888888773                   333332222234 8899999998


Q ss_pred             ceEEEEe-eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--
Q 023643          104 DALLLSC-GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--  180 (279)
Q Consensus       104 ~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  180 (279)
                        .++.+ ..++.|.+.|.+......    ......  +     ....          .-..+.++|++..+++....  
T Consensus       173 --~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~--~-----~~~~----------~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         173 --KVYVTNSDDNTVSVIDTSGNSVVR----GSVGSL--V-----GVGT----------GPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             --eEEEEecCCCeEEEEeCCCcceec----cccccc--c-----ccCC----------CCceEEECCCCCEEEEEeccCC
Confidence              44444 578999999965321110    000000  0     0000          12578999999977765543  


Q ss_pred             -CeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCCCceEEEec
Q 023643          181 -SCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       181 -~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~  240 (279)
                       +.+...|..++..... ..........+..+|+|+.+.+. +..+.+.+-|..+.+....+.
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence             5899999988877665 22111156678999999988777 445889999998877777654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.62  E-value=0.019  Score=44.49  Aligned_cols=105  Identities=13%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             EEcCCCCeEEEecCCCeEEEEecCCCcEEE--EeecC----------CcceEEEEEcCCCcEEEEecC---CC-------
Q 023643          166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKM--VFKGH----------SDYLHCIVARNSTNQIVTGSE---DG-------  223 (279)
Q Consensus       166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~----------~~~i~~i~~~~~~~~l~~~~~---d~-------  223 (279)
                      ++...+..++-.+.+|.|+--|+.......  .+..-          .+.-.-+++++..+.|..-..   ++       
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            444445555557778999998887554222  22110          112334677775444433221   22       


Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEE-cCcceEEeCC
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRV-RATNYVILFS  279 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~d~~i~~wd  279 (279)
                      .|-++|+.+++.+.+++.         ..++.+|..+.+.+ +|++. ..++.+.+||
T Consensus       270 eVWv~D~~t~krv~Ri~l---------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL---------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE---------EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEEeC---------CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            277889999999999842         23577899988754 56544 5678898886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.59  E-value=0.0083  Score=50.84  Aligned_cols=102  Identities=8%  Similarity=0.057  Sum_probs=58.2

Q ss_pred             eeEEEcCCCCeEEEecCC------------CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE---
Q 023643          163 NAIAVDPQGGAIFSAAGD------------SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI---  227 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v---  227 (279)
                      +.-.|+|++..+++....            +.+.+.+++.++...   .....|..+.|+|||..++... ++.|.+   
T Consensus       400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence            566899998877666432            233333444333322   2345799999999999887765 577776   


Q ss_pred             EeCCCCceEEEecCCccccc-cCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          228 WDCKSGKCIKVIDPVKDKQL-KGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      -....|.  ..+....  .+ .+-...+..+.|..++.++ ++..++
T Consensus       476 vr~~~G~--~~l~~~~--~l~~~l~~~~~~l~W~~~~~L~-V~~~~~  517 (591)
T PRK13616        476 EQTEDGQ--YALTNPR--EVGPGLGDTAVSLDWRTGDSLV-VGRSDP  517 (591)
T ss_pred             EeCCCCc--eeecccE--EeecccCCccccceEecCCEEE-EEecCC
Confidence            4434454  2221000  00 1222335778999988855 444433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.035  Score=44.72  Aligned_cols=181  Identities=11%  Similarity=0.111  Sum_probs=110.4

Q ss_pred             EEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEE
Q 023643           30 RTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLL  108 (279)
Q Consensus        30 ~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  108 (279)
                      .++.++    .+. ..++...++.|.+.|..+.                   +......- ......+.+.|+++  .+.
T Consensus        78 ~i~v~~----~~~~vyv~~~~~~~v~vid~~~~-------------------~~~~~~~v-G~~P~~~~~~~~~~--~vY  131 (381)
T COG3391          78 GVAVNP----AGNKVYVTTGDSNTVSVIDTATN-------------------TVLGSIPV-GLGPVGLAVDPDGK--YVY  131 (381)
T ss_pred             ceeeCC----CCCeEEEecCCCCeEEEEcCccc-------------------ceeeEeee-ccCCceEEECCCCC--EEE
Confidence            456666    455 4555556688999996652                   22222211 11456789999987  444


Q ss_pred             EeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEE
Q 023643          109 SCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAY  184 (279)
Q Consensus       109 s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~  184 (279)
                      .+..   ++++.+.|..+......  ...+.  .                      -..++++|+++.+++.. .++.|.
T Consensus       132 V~n~~~~~~~vsvid~~t~~~~~~--~~vG~--~----------------------P~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         132 VANAGNGNNTVSVIDAATNKVTAT--IPVGN--T----------------------PTGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             EEecccCCceEEEEeCCCCeEEEE--EecCC--C----------------------cceEEECCCCCeEEEEecCCCeEE
Confidence            4433   67888887543211111  11111  0                      15789999999766655 789999


Q ss_pred             EEecCCCcEEE-E---eecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          185 CWDVESSRIKM-V---FKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       185 i~d~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      +.|.......+ .   ...-......+.++|++.++......   +.+...|..++.....-..      .+.. ....+
T Consensus       186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~~~~v  258 (381)
T COG3391         186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-APRGV  258 (381)
T ss_pred             EEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-CCCce
Confidence            99987666553 1   01122344678899998865554433   5899999988877665211      1111 34567


Q ss_pred             EEcCCCCEEEEE
Q 023643          258 TLDASESWLVRV  269 (279)
Q Consensus       258 ~~~~~~~~l~~~  269 (279)
                      .++|+|..+.+.
T Consensus       259 ~~~p~g~~~yv~  270 (381)
T COG3391         259 AVDPAGKAAYVA  270 (381)
T ss_pred             eECCCCCEEEEE
Confidence            889999887776

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.00093  Score=58.12  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             CCCeEEEecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      .+..++.|+..|.+-..|.... .+...-+.-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+.    .
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~----a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG----A  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC----C
Confidence            4557888888899988887643 2222223346799999999999999999999999999999999998884331    1


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          249 GVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      .+ ..|-.+.+..++..++++...|.
T Consensus       174 p~-t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  174 PV-TGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cc-ceEEEEEEeCCCcEEEEccCCCc
Confidence            12 22333344445567888777774

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0034  Score=54.84  Aligned_cols=65  Identities=25%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      .+..++.|++.|.+-..|+...                  ..+...-..-.++|++++|+.++.  .++.|-.+|.|.+|
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n------------------L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~  157 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN------------------LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVW  157 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc------------------cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEE
Confidence            3467889999999988888753                  122122222467999999999998  99999999999999


Q ss_pred             ecCCC
Q 023643          120 RWKEF  124 (279)
Q Consensus       120 ~~~~~  124 (279)
                      |+...
T Consensus       158 D~~~~  162 (1206)
T KOG2079|consen  158 DMHRA  162 (1206)
T ss_pred             EccCC
Confidence            98653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0057  Score=53.92  Aligned_cols=210  Identities=12%  Similarity=0.097  Sum_probs=115.5

Q ss_pred             EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCC-ccCeEEEEecCCCCceEEE
Q 023643           30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH-DGPAYDVKFYGGNEDALLL  108 (279)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~  108 (279)
                      .++.++    .-.++++++..+.+.|+-....-   .+....+....+++..+...++-| .-++..+...++..-..++
T Consensus        46 ~la~sn----~ysl~Fa~~nsk~L~vfgtknlL---i~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~  118 (1405)
T KOG3630|consen   46 NLAISN----SYSLFFAASNSKSLAVFGTKNLL---IDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVV  118 (1405)
T ss_pred             hhhccc----ccceEEEecCCcceeeeccccce---eecccccccccccccccccceeeeccccceEEEeccCCceEEEE
Confidence            345555    44556666666777766544310   001111111111112223334333 2345555556665522444


Q ss_pred             EeeCCCcEEEeecCCCccCcce--eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEE
Q 023643          109 SCGDDGRICGWRWKEFTESKVP--INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYC  185 (279)
Q Consensus       109 s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i  185 (279)
                      ..+.+-.|..||++........  ..+..+.. .+               .......++.|+|.-. ..++...|+.|++
T Consensus       119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t-s~---------------ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  119 STSNGEAVYSFDLEEFSESRYETTVPLKNSAT-SF---------------EKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             EecCCceEEEEehHhhhhhhhhhccccccccc-hh---------------ccccccccccccCCccchhhhhccccchhh
Confidence            5555567889998764322111  11111000 00               0001246788988644 4455667888888


Q ss_pred             EecCCCc-EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643          186 WDVESSR-IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES  264 (279)
Q Consensus       186 ~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  264 (279)
                      ..+.... .+..+. -....+|++|+|.|+.++.|-..|++.-|.. +++....+....    ......|.+++|-....
T Consensus       183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp----~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPP----VEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCC----cCCCcceeEEEEeccee
Confidence            8765332 222332 4566899999999999999999999998874 566556665433    12246799999987776


Q ss_pred             EEEE
Q 023643          265 WLVR  268 (279)
Q Consensus       265 ~l~~  268 (279)
                      +++.
T Consensus       257 flvv  260 (1405)
T KOG3630|consen  257 FLVV  260 (1405)
T ss_pred             EEEE
Confidence            6664

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.45  E-value=0.00052  Score=36.33  Aligned_cols=31  Identities=26%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP   59 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~   59 (279)
                      ..+|..++|+|    ..++||.++.+|.|.++.++
T Consensus        11 ~~~v~~~~w~P----~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCP----TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECC----CCCEEEEEECCCeEEEEECC
Confidence            46799999999    89999999999999999985

>PHA02713 hypothetical protein; Provisional

Probab=97.44  E-value=0.029  Score=47.61  Aligned_cols=82  Identities=7%  Similarity=-0.027  Sum_probs=42.2

Q ss_pred             eEEEEecCCCcE--EEEeecCCcceEEEEEcCCCcEEEEecCC------CeEEEEeCCC-CceEEEecCCccccccCcce
Q 023643          182 CAYCWDVESSRI--KMVFKGHSDYLHCIVARNSTNQIVTGSED------GTARIWDCKS-GKCIKVIDPVKDKQLKGVIS  252 (279)
Q Consensus       182 ~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  252 (279)
                      .+..||..+.+-  +..+....... +++ .-+++..+.|+.+      ..+..||..+ .+....-..      .....
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m------~~~r~  504 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT------ESRLS  504 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc------Ccccc
Confidence            477888876533  22222111111 122 2246777777754      2467899887 454322211      12222


Q ss_pred             eeeEEEEcCCCCEEEEEcCcc
Q 023643          253 CVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       253 ~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      ....+++  ++++.++|+.++
T Consensus       505 ~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        505 ALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             cceeEEE--CCEEEEEeeecc
Confidence            2333333  678888998887

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.42  E-value=0.00073  Score=35.76  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       201 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      ...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456899999999999999999999999998 5554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.013  Score=47.52  Aligned_cols=89  Identities=19%  Similarity=0.369  Sum_probs=60.6

Q ss_pred             EEecCCCeEEEEecCCC-c-EEEEeecCC----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          175 FSAAGDSCAYCWDVESS-R-IKMVFKGHS----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~-~-~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      ++|-.+..|.-||.+-. . .+..-++|+    ....|.+-. ...+|++||.+|.||+||. .+....+.-       +
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-------P  468 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTAL-------P  468 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcc-------c
Confidence            34666888999998842 2 222223332    223444443 3468999999999999996 665554442       5


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCc
Q 023643          249 GVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      +...+|..+..+.+|++|++.+..
T Consensus       469 gLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  469 GLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             ccCCceeeEEeeccCcEEEEeccc
Confidence            777899999999999998876654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.041  Score=42.63  Aligned_cols=69  Identities=14%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             ceeEEEcCCCCeEEEecC-----------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEe
Q 023643          162 NNAIAVDPQGGAIFSAAG-----------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWD  229 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd  229 (279)
                      .+.+...|+|.+.++...           -|.++.+|. .+..++.+..+-..-+.|+||||++.|..+ +..+.|.-|+
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            467788888876555333           144555554 566767666666667889999999766555 4558888887


Q ss_pred             CC
Q 023643          230 CK  231 (279)
Q Consensus       230 ~~  231 (279)
                      +.
T Consensus       192 ~d  193 (307)
T COG3386         192 LD  193 (307)
T ss_pred             cC
Confidence            75

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.35  E-value=0.0092  Score=43.87  Aligned_cols=98  Identities=11%  Similarity=0.020  Sum_probs=70.3

Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI  251 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  251 (279)
                      .+++.|++.+.+.-.|..+|+.+.+-. -..++.+-+.- -|++++.|+..|.+++.+..+|.....+....       .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-------~   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-------T   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-------h
Confidence            478889999999999999998876532 22333332221 47889999999999999999997777663211       1


Q ss_pred             eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          252 SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       252 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      -.+ ....++++..+.+|+.|++.+.-|
T Consensus        95 vk~-~a~~d~~~glIycgshd~~~yalD  121 (354)
T KOG4649|consen   95 VKV-RAQCDFDGGLIYCGSHDGNFYALD  121 (354)
T ss_pred             hcc-ceEEcCCCceEEEecCCCcEEEec
Confidence            112 234577899999999999887543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.34  E-value=0.042  Score=42.08  Aligned_cols=160  Identities=16%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      .++.|+.|+.+| |.+++....                  ..+....  +..+|..+...|+-+  .|+.-+ |+.+.++
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~------------------~~~~~i~--~~~~I~ql~vl~~~~--~llvLs-d~~l~~~   61 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDP------------------SKPTRIL--KLSSITQLSVLPELN--LLLVLS-DGQLYVY   61 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCC------------------ccceeEe--ecceEEEEEEecccC--EEEEEc-CCccEEE
Confidence            678999999998 899998321                  1122222  233499999999876  665554 5999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEE--EcCCC-CeEEEecCCCeEEEEecCCC-----
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIA--VDPQG-GAIFSAAGDSCAYCWDVESS-----  191 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~l~~~~~d~~i~i~d~~~~-----  191 (279)
                      ++.................. ....          .......+...+  -...+ ..|+++. ...|.+|.....     
T Consensus        62 ~L~~l~~~~~~~~~~~~~~~-~~~~----------~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~  129 (275)
T PF00780_consen   62 DLDSLEPVSTSAPLAFPKSR-SLPT----------KLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFS  129 (275)
T ss_pred             Echhhccccccccccccccc-cccc----------cccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCccccc
Confidence            98764333211100000000 0000          000000123333  11223 3444444 458888877642     


Q ss_pred             cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          192 RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       192 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +..+++. -...+.+++|.  ++.++.|..++ ..+.|+.++.....+
T Consensus       130 ~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  130 KLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             ceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence            4555555 34678899998  66777776554 777898877665444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.30  E-value=0.078  Score=44.35  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             CCCeEEEEecCCCcEEEEeecCC--------cceE--EEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHS--------DYLH--CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~--------~~i~--~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .+|.+.-.|+.+++.+-+.....        .+..  .+.  ..+..++.++.||.|+.+|.++|+.+.+.+.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            46889999999998887765331        1111  112  2467888999999999999999999988753

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.26  E-value=0.021  Score=45.55  Aligned_cols=192  Identities=13%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      +...+||+++.+...+   ......+....|+|    +|+.+|... ++.|.+++..++.... +.  ..+...+.-+.+
T Consensus        23 ~~y~i~d~~~~~~~~l---~~~~~~~~~~~~sP----~g~~~~~v~-~~nly~~~~~~~~~~~-lT--~dg~~~i~nG~~   91 (353)
T PF00930_consen   23 GDYYIYDIETGEITPL---TPPPPKLQDAKWSP----DGKYIAFVR-DNNLYLRDLATGQETQ-LT--TDGEPGIYNGVP   91 (353)
T ss_dssp             EEEEEEETTTTEEEES---S-EETTBSEEEE-S----SSTEEEEEE-TTEEEEESSTTSEEEE-SE--S--TTTEEESB-
T ss_pred             eeEEEEecCCCceEEC---cCCccccccceeec----CCCeeEEEe-cCceEEEECCCCCeEE-ec--cccceeEEcCcc
Confidence            4567788877543222   22257788999999    899988875 5689999887652211 11  111111111111


Q ss_pred             cccccCC-ccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           83 DGFLHGH-DGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        83 ~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      --..+.- -+.-..+-|+|+++  +|+.... +..|+.+.+-.....        ....+                    
T Consensus        92 dwvyeEEv~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~~~~~~~~--------~~~yp--------------------  141 (353)
T PF00930_consen   92 DWVYEEEVFDRRSAVWWSPDSK--YLAFLRFDEREVPEYPLPDYSPP--------DSQYP--------------------  141 (353)
T ss_dssp             -HHHHHHTSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEEEEEESSS--------TESS---------------------
T ss_pred             ceeccccccccccceEECCCCC--EEEEEEECCcCCceEEeeccCCc--------cccCC--------------------
Confidence            0000000 11124688999998  7766544 444544443211000        00000                    


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-Ee----ecCCcceEEEEEcCCCcEEEEec--CC---CeEEEEeC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VF----KGHSDYLHCIVARNSTNQIVTGS--ED---GTARIWDC  230 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~----~~~~~~i~~i~~~~~~~~l~~~~--~d---~~i~vwd~  230 (279)
                      .+..+.+-.-|....    .-.+.++|+.+++... ..    ......+..+.|.++++.|+..-  .+   ..+.++|.
T Consensus       142 ~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~  217 (353)
T PF00930_consen  142 EVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA  217 (353)
T ss_dssp             EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred             cccccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence            023333321122111    1236778888776532 11    23456788999999988444332  22   23677788


Q ss_pred             CCCceEEEe
Q 023643          231 KSGKCIKVI  239 (279)
Q Consensus       231 ~~~~~~~~~  239 (279)
                      .+++....+
T Consensus       218 ~tg~~~~~~  226 (353)
T PF00930_consen  218 STGETRVVL  226 (353)
T ss_dssp             CTTTCEEEE
T ss_pred             CCCceeEEE
Confidence            777665444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.23  E-value=0.0018  Score=51.55  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             cCCCCeEEEec---------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          168 DPQGGAIFSAA---------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       168 ~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      |||+++++...         ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.++++.+++..+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            46666665532         246789999998766554443 56788899999999998875 67899999887754433


Q ss_pred             ecCCccccccCc---------ceeeeEEEEcCCCCEEEEEcCc
Q 023643          239 IDPVKDKQLKGV---------ISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       239 ~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      -.......+.+-         -..-.++-||||+++||....|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            321111000000         0123567899999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.14  E-value=0.1  Score=44.44  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             CCCeEEEecCC------CeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEecCCCe-----EEEEeCCCCceE
Q 023643          170 QGGAIFSAAGD------SCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGT-----ARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-----i~vwd~~~~~~~  236 (279)
                      ++...++|+.+      .++..||..+.+-..  .+........ ++. -++..++.|+.|+.     |..||..+.+..
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence            56666777644      457788887764332  2322222222 222 35788888888773     777888877665


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      ..-..      ......+..+..  ++...++|+.||.
T Consensus       505 ~v~~m------~~~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  505 MVAPM------TSPRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             EcccC------ccccccccEEEE--CCEEEEEecccCc
Confidence            44211      112222222222  4677778877763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.05  E-value=0.061  Score=41.19  Aligned_cols=129  Identities=13%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .|+.|..+| +.+++++............                          .|..+...|+-+.+++-+ |+.+++
T Consensus         9 ~L~vGt~~G-l~~~~~~~~~~~~~i~~~~--------------------------~I~ql~vl~~~~~llvLs-d~~l~~   60 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDPSKPTRILKLS--------------------------SITQLSVLPELNLLLVLS-DGQLYV   60 (275)
T ss_pred             EEEEEECCC-EEEEEecCCccceeEeecc--------------------------eEEEEEEecccCEEEEEc-CCccEE
Confidence            888998888 8998872211111111111                          167888888777776665 599999


Q ss_pred             EecCCCcEEEEe--------------ecCCcceEEEE--EcCCCcEEEEecCCCeEEEEeCCCC-----ceEEEecCCcc
Q 023643          186 WDVESSRIKMVF--------------KGHSDYLHCIV--ARNSTNQIVTGSEDGTARIWDCKSG-----KCIKVIDPVKD  244 (279)
Q Consensus       186 ~d~~~~~~~~~~--------------~~~~~~i~~i~--~~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~  244 (279)
                      +++..-......              ......+...+  -...+...+.......|.+|.....     +..+.+..   
T Consensus        61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---  137 (275)
T PF00780_consen   61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL---  137 (275)
T ss_pred             EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc---
Confidence            998764433311              01122333333  1123444444445668988887653     34445432   


Q ss_pred             ccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          245 KQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                            ...+..++|.  ++.|+.|..++
T Consensus       138 ------p~~~~~i~~~--~~~i~v~~~~~  158 (275)
T PF00780_consen  138 ------PDPPSSIAFL--GNKICVGTSKG  158 (275)
T ss_pred             ------CCCcEEEEEe--CCEEEEEeCCc
Confidence                  2467788887  45566665544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=97.02  E-value=0.052  Score=46.51  Aligned_cols=174  Identities=13%  Similarity=0.109  Sum_probs=94.7

Q ss_pred             CCEEEEecCCCcEEEEeCCCCCcccc------cccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC
Q 023643           41 PDTIVIASSDGSITSYSIPSCISKLP------LGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG  114 (279)
Q Consensus        41 ~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg  114 (279)
                      .++|+++. .+.|.||++........      +...+......  .....+.. -...|+-|....-+....|+.|..||
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~--D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG  124 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTP--DRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDG  124 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccc--cccccCCC-CCceeeEEEecccCCeeEEEEEecCC
Confidence            45666654 56899999876433211      01111100000  01111111 12235666555444445999999999


Q ss_pred             cEEEeecCCCccCcceee------eccCcccceEEeecCCCCCccccCCCCCCceeEEEc--CCCCeEEEecCCCeEEEE
Q 023643          115 RICGWRWKEFTESKVPIN------LQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD--PQGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       115 ~i~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~i~  186 (279)
                      .|.+|.++..-.......      .......|.+.+..            ...+.+++++  ...+++|++++...|.+|
T Consensus       125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v------------~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV------------GASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec------------CCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            999998753211000000      00011112111111            1246888988  777899999988888887


Q ss_pred             ecCCC--cEEE-EeecCCcceEEEEEcCCC---c---EEEEecCCCeEEEEeC
Q 023643          187 DVESS--RIKM-VFKGHSDYLHCIVARNST---N---QIVTGSEDGTARIWDC  230 (279)
Q Consensus       187 d~~~~--~~~~-~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~vwd~  230 (279)
                      -....  +... .-..+...|.+|+|-++.   .   ++++++-.|.+-+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            65432  1111 111255678899987742   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.98  E-value=0.064  Score=39.05  Aligned_cols=104  Identities=12%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      -+.++|..+.+ .+.+.-+.+-+|.-||.+.....       -.....++++...   .+...+.+    -.+++..+|+
T Consensus       160 sNgl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~-------~snr~~i~dlrk~---~~~e~~~P----DGm~ID~eG~  224 (310)
T KOG4499|consen  160 SNGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGD-------LSNRKVIFDLRKS---QPFESLEP----DGMTIDTEGN  224 (310)
T ss_pred             CccccccccCc-EEEEEccCceEEeeeecCCCccc-------ccCcceeEEeccC---CCcCCCCC----CcceEccCCc
Confidence            45788887766 35566777888888885421110       0011122222221   11111111    2445577888


Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN  211 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  211 (279)
                      +.++.-+.++|...|..+|+.+.+++-....|++++|-.
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            888888889999999999999999999999999999964

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.93  E-value=0.11  Score=39.25  Aligned_cols=206  Identities=14%  Similarity=0.075  Sum_probs=115.9

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-CccCeEEEEecCC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDGPAYDVKFYGG  101 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~  101 (279)
                      +-...|.++.|+|    +.+.|++..+...-.|+--..                   ++.++++.- --.....+.+..+
T Consensus        83 g~~~nvS~LTynp----~~rtLFav~n~p~~iVElt~~-------------------GdlirtiPL~g~~DpE~Ieyig~  139 (316)
T COG3204          83 GETANVSSLTYNP----DTRTLFAVTNKPAAIVELTKE-------------------GDLIRTIPLTGFSDPETIEYIGG  139 (316)
T ss_pred             cccccccceeeCC----CcceEEEecCCCceEEEEecC-------------------CceEEEecccccCChhHeEEecC
Confidence            4455699999999    667676666666555554443                   344443321 1122456777777


Q ss_pred             CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC
Q 023643          102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS  181 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  181 (279)
                      ++  +.++--.++.+.++.+............    .-+   +....+        .+.....++|+|....|+.+-...
T Consensus       140 n~--fvi~dER~~~l~~~~vd~~t~~~~~~~~----~i~---L~~~~k--------~N~GfEGlA~d~~~~~l~~aKEr~  202 (316)
T COG3204         140 NQ--FVIVDERDRALYLFTVDADTTVISAKVQ----KIP---LGTTNK--------KNKGFEGLAWDPVDHRLFVAKERN  202 (316)
T ss_pred             CE--EEEEehhcceEEEEEEcCCccEEeccce----EEe---ccccCC--------CCcCceeeecCCCCceEEEEEccC
Confidence            76  7777778889988887643211111110    000   000000        012357899999999998888877


Q ss_pred             eEEEEecCCCc-E--EEEeecCC-------cceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcc-ccccC
Q 023643          182 CAYCWDVESSR-I--KMVFKGHS-------DYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD-KQLKG  249 (279)
Q Consensus       182 ~i~i~d~~~~~-~--~~~~~~~~-------~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~  249 (279)
                      -+.||...... .  +.....+.       ..|.++.|++. +.+++-+.+++.+.-.|. .|..+..+..... ..+..
T Consensus       203 P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~  281 (316)
T COG3204         203 PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSS  281 (316)
T ss_pred             CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcc
Confidence            77777765332 1  11111111       23567788874 667777778888887775 4554544432211 01111


Q ss_pred             cceeeeEEEEcCCCCEEEEE
Q 023643          250 VISCVSCITLDASESWLVRV  269 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~  269 (279)
                      .-..-.+++.+++|.+.+++
T Consensus       282 dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         282 DIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             cCCCcceeEECCCCCEEEEe
Confidence            12234677888887755544

>PHA02713 hypothetical protein; Provisional

Probab=96.85  E-value=0.059  Score=45.80  Aligned_cols=68  Identities=6%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             CCCeEEEecCC------CeEEEEecCC-C--cEEEEeecCCcceEEEEEcCCCcEEEEecCCC--eEEEEeCCCCceEEE
Q 023643          170 QGGAIFSAAGD------SCAYCWDVES-S--RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG--TARIWDCKSGKCIKV  238 (279)
Q Consensus       170 ~~~~l~~~~~d------~~i~i~d~~~-~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~  238 (279)
                      ++...+.|+.+      ..+..||..+ .  ..+..+.........+.+  +++..++|+.++  .+..||..+.+....
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence            45566666643      2467899886 3  333344333333333333  678899999888  788888887765544


Q ss_pred             e
Q 023643          239 I  239 (279)
Q Consensus       239 ~  239 (279)
                      -
T Consensus       541 ~  541 (557)
T PHA02713        541 C  541 (557)
T ss_pred             h
Confidence            3

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.80  E-value=0.00053  Score=58.53  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             Cceeeeccccccccceeeee-----ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            3 GDSTNWDEDAYRKSILKERE-----ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      |...||+++--+-++...+.     .-...+.-+.|+|.. .+..++..+-.+++|++.+.++.                
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~-~~~~~ic~~~~~~~i~lL~~~ra----------------  215 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA-VNKVYICYGLKGGEIRLLNINRA----------------  215 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc-cccceeeeccCCCceeEeeechH----------------
Confidence            56678886532212222222     223445666777632 25577778889999999888863                


Q ss_pred             eeccccccccCCccCeEEEE-----------ecCCCCceEEEEeeCCCcEEEeec
Q 023643           78 LGIEPDGFLHGHDGPAYDVK-----------FYGGNEDALLLSCGDDGRICGWRW  121 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~~l~s~~~dg~i~iw~~  121 (279)
                          ....+++|...+..++           .+|+|+  .|+.+..||.++.|.+
T Consensus       216 ----~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  216 ----LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ----HHHHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence                1244556766655554           467777  8888888888888775

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.80  E-value=0.2  Score=40.31  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=54.5

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCC-----cE--E-EEeec----CCcceEEEEEcCCCcEEEEecCC-------
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESS-----RI--K-MVFKG----HSDYLHCIVARNSTNQIVTGSED-------  222 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~--~-~~~~~----~~~~i~~i~~~~~~~~l~~~~~d-------  222 (279)
                      .+.+++.+++  |+++......++.|....     +.  + ..+..    +......++|.|+|.+.++-+..       
T Consensus        74 p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~  151 (367)
T TIGR02604        74 VTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR  151 (367)
T ss_pred             ccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence            3688888887  555554443344455321     21  1 12322    13447789999999877655521       


Q ss_pred             ------------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          223 ------------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       223 ------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                                  |.|.-++...++. ..+.       .++ .....++|+|+|+++++-.
T Consensus       152 ~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a-------~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       152 PGTSDESRQGLGGGLFRYNPDGGKL-RVVA-------HGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCccCcccccCceEEEEecCCCeE-EEEe-------cCc-CCCccceECCCCCEEEEcc
Confidence                        3344455444332 2221       232 2346899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.2  Score=42.88  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=32.2

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  198 (279)
                      ..+..+..+|+.++|+-=...|.|.+-+.+..+....+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            457788899999999988889999999888777766665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.78  E-value=0.17  Score=39.35  Aligned_cols=169  Identities=14%  Similarity=0.246  Sum_probs=92.1

Q ss_pred             CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE-EEEecCCCCceEEEEeeCCCcEEEe
Q 023643           41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY-DVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      +..+.+-+.||++.-..+.......              .+....|..-.+++. .-.+...+.  .++--+..|.|+--
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~--------------~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~  210 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEA--------------QKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSA  210 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEE--------------EEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEE
T ss_pred             CCceEEEecCCceEEEEECCCCCEe--------------EeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEE
Confidence            3568888999999988888532111              000112222222222 223333333  55556778888888


Q ss_pred             ecCCCccCcceeeeccCcccceEEeec-CCCCCccccCCCCCCceeEEEcCCCCeEEEecC--------C--CeEEEEec
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVN-HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--------D--SCAYCWDV  188 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d--~~i~i~d~  188 (279)
                      |+.... ......         +.+.. .+....|..    +.-.-+++++..+.|++.-+        |  ..|-++|+
T Consensus       211 dlsg~~-~~~~~~---------~~~~t~~e~~~~WrP----GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  211 DLSGDS-AKFGKP---------WSLLTDAEKADGWRP----GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EETTSS-EEEEEE---------EESS-HHHHHTTEEE-----SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eccCCc-ccccCc---------ccccCccccccCcCC----cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            765321 111000         00000 000001100    01245788877766666422        1  25788899


Q ss_pred             CCCcEEEEeecCCcceEEEEEcCCCc-EEEE-ecCCCeEEEEeCCCCceEEEec
Q 023643          189 ESSRIKMVFKGHSDYLHCIVARNSTN-QIVT-GSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~-~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+++.+..+.. ..++.+|+.+.+.+ +|++ ...++.|.+||..+|+.+.++.
T Consensus       277 ~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  277 KTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             TTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             CCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            99999998873 34577899988754 5544 4568999999999999999885

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.77  E-value=0.26  Score=41.32  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             CCCeEEEEecCCCcEEEEeecCCcc--------------------e-EEEEEcCCCcEEEEecCCC--------------
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHSDY--------------------L-HCIVARNSTNQIVTGSEDG--------------  223 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~~~--------------------i-~~i~~~~~~~~l~~~~~d~--------------  223 (279)
                      .++.+..+|..+++.+..++.....                    + ...++.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            3688999999999988877542110                    1 1234444566777777665              


Q ss_pred             ----eEEEEeCCCCceEEEec
Q 023643          224 ----TARIWDCKSGKCIKVID  240 (279)
Q Consensus       224 ----~i~vwd~~~~~~~~~~~  240 (279)
                          .|.-+|..+|+.+..++
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEee
Confidence                79999999999988874

The alignment model contains an 8-bladed beta-propeller.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.75  E-value=0.11  Score=43.06  Aligned_cols=111  Identities=8%  Similarity=0.083  Sum_probs=66.4

Q ss_pred             ceeEEEcCC----CCeEEEecCCCeEEEEecCC-----CcEEEEeec-CCc----ceEEEEEcCCCcEEEEecCCCeEEE
Q 023643          162 NNAIAVDPQ----GGAIFSAAGDSCAYCWDVES-----SRIKMVFKG-HSD----YLHCIVARNSTNQIVTGSEDGTARI  227 (279)
Q Consensus       162 i~~~~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~-~~~----~i~~i~~~~~~~~l~~~~~d~~i~v  227 (279)
                      |..+.|.|-    ...|++......|.+|-+.-     ++.+..-.. ...    -...+.|+|....|+.-.....=.+
T Consensus        59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~  138 (671)
T PF15390_consen   59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL  138 (671)
T ss_pred             eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence            688999984    33555566788999998852     232222111 111    1245679998877766555444445


Q ss_pred             EeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      ++++.....-..+       ....+.|.|.+|.+||+.|+.+- ..=.-++||
T Consensus       139 ~sV~~d~srVkaD-------i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  139 PSVHCDSSRVKAD-------IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             eeeeeCCceEEEe-------ccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            5655433222221       13346799999999999887663 333456776

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.74  E-value=0.086  Score=44.78  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=70.1

Q ss_pred             eeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEc--CCCcEEEEecCCCeEEEEeCC--------
Q 023643          163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVAR--NSTNQIVTGSEDGTARIWDCK--------  231 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~d~~i~vwd~~--------  231 (279)
                      .-+.-+.-++.-++-+....+.|||.+.+....+-. ...+.|.++.|.  |+++.+++.+..+.|.+|--.        
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            344444444444444445679999999887544332 356789999886  478999999999999998532        


Q ss_pred             -CCceEEEecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 -SGKCIKVIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 -~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       +-..+..+..      ..++ .+|....|.++|..++.++  +.+.++|
T Consensus       113 p~w~~i~~i~i------~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  113 PSWAPIRKIDI------SSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             cccceeEEEEe------ecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence             1123333321      3333 5788999999998666553  4455553

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.69  E-value=0.14  Score=42.50  Aligned_cols=122  Identities=16%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             cCeEEEEecCCCCc--eEEEEeeCCCcEEEeecCCCcc--CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEE
Q 023643           91 GPAYDVKFYGGNED--ALLLSCGDDGRICGWRWKEFTE--SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIA  166 (279)
Q Consensus        91 ~~v~~~~~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  166 (279)
                      ..|..++|.|-+..  ..|++......|.+|.+.....  .+.......+...+            +...     -..+.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~------------~pvL-----pQGCV  119 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREP------------FPVL-----PQGCV  119 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCC------------cccC-----CCccc
Confidence            45899999986321  1466666778999999853211  11111111111000            0000     14667


Q ss_pred             EcCCCCeEEEecCCCeEEEEecCC--CcEEEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeC
Q 023643          167 VDPQGGAIFSAAGDSCAYCWDVES--SRIKMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDC  230 (279)
Q Consensus       167 ~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~  230 (279)
                      |+|....|++-+....-.+++++.  .+....++ ..+.|.|.+|.+||+.|+.+ +..=.-++||-
T Consensus       120 WHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  120 WHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            999988887766655555666543  33444454 56889999999999876654 33444678884

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.68  E-value=0.013  Score=30.01  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             cceEEEEEcCC-C--cEEEEecCCCeEEEEeCCCC
Q 023643          202 DYLHCIVARNS-T--NQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       202 ~~i~~i~~~~~-~--~~l~~~~~d~~i~vwd~~~~  233 (279)
                      +.++++.|+|. +  .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46899999985 3  58888888999999999963

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.68  E-value=0.2  Score=38.73  Aligned_cols=111  Identities=9%  Similarity=-0.000  Sum_probs=59.9

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..+..+..++++.+++++..-....-||.-...-...-+.-...|..|.|.|++...+.+ ..|.|++=+..  .....+
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~--~~~~~w  221 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP--DDGETW  221 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T--TEEEEE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC--CCcccc
Confidence            457788889999999888766666778764322222222346789999999998776655 88888887621  122222


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      ..+. ..+....-.+..++|.+++...|+|+....
T Consensus       222 ~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l  255 (302)
T PF14870_consen  222 SEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTL  255 (302)
T ss_dssp             ---B--TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred             cccc-CCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence            1110 000122335789999999888887766543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.66  E-value=0.18  Score=37.86  Aligned_cols=199  Identities=11%  Similarity=0.019  Sum_probs=111.5

Q ss_pred             ceeeeeecc-cceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCe
Q 023643           17 ILKEREILT-RTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPA   93 (279)
Q Consensus        17 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v   93 (279)
                      ++++++... .-...+.|..    ++.++-+.+.-|  .|+.+|+.+++....                 ..+. ..-.-
T Consensus        35 vv~~ypHd~~aFTQGL~~~~----~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------------~~l~-~~~Fg   92 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLD----DGTLYESTGLYGQSSLRKVDLETGKVLQS-----------------VPLP-PRYFG   92 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEE----TTEEEEEECSTTEEEEEEEETTTSSEEEE-----------------EE-T-TT--E
T ss_pred             EEEECCCCCcccCccEEecC----CCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------------EECC-ccccc
Confidence            344444222 2345677866    688888877666  789999998532111                 1111 11223


Q ss_pred             EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe
Q 023643           94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA  173 (279)
Q Consensus        94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  173 (279)
                      ..++...+.   ...-.=.++...+||.++.+... ...+.+.                         =..++  .++..
T Consensus        93 EGit~~~d~---l~qLTWk~~~~f~yd~~tl~~~~-~~~y~~E-------------------------GWGLt--~dg~~  141 (264)
T PF05096_consen   93 EGITILGDK---LYQLTWKEGTGFVYDPNTLKKIG-TFPYPGE-------------------------GWGLT--SDGKR  141 (264)
T ss_dssp             EEEEEETTE---EEEEESSSSEEEEEETTTTEEEE-EEE-SSS---------------------------EEE--ECSSC
T ss_pred             eeEEEECCE---EEEEEecCCeEEEEccccceEEE-EEecCCc-------------------------ceEEE--cCCCE
Confidence            344444332   44444567888899976542211 1111110                         14455  46777


Q ss_pred             EEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccc--
Q 023643          174 IFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ--  246 (279)
Q Consensus       174 l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--  246 (279)
                      |+.......|+++|..+.+.++.+.-..     ..+..+.+- +|...|-.=....|...|..+|+....+.......  
T Consensus       142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~  220 (264)
T PF05096_consen  142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV  220 (264)
T ss_dssp             EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred             EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence            8888778899999999888777665321     245566675 67777777778888889999999988875432100  


Q ss_pred             -----ccCcceeeeEEEEcCCCC-EEEEE
Q 023643          247 -----LKGVISCVSCITLDASES-WLVRV  269 (279)
Q Consensus       247 -----~~~~~~~v~~~~~~~~~~-~l~~~  269 (279)
                           ......-.+.||++|... +++||
T Consensus       221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                 011135689999998654 55565

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.65  E-value=0.16  Score=43.30  Aligned_cols=115  Identities=14%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643           41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR  120 (279)
Q Consensus        41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~  120 (279)
                      +..-++-+...++.|||.....                 .+....+ ...+.|..+.|.....++.+++.|....|.++.
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~-----------------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGV-----------------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcE-----------------EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3444444445579999998743                 1122233 356789999997654444899999999999987


Q ss_pred             cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEec
Q 023643          121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV  188 (279)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  188 (279)
                      -....     ....+..-.++..+.-..+..        .+|.+..|.++|..++.++  ..+.++|-
T Consensus       103 Q~R~d-----y~~~~p~w~~i~~i~i~~~T~--------h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  103 QLRYD-----YTNKGPSWAPIRKIDISSHTP--------HPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             ccchh-----hhcCCcccceeEEEEeecCCC--------CCccceeEecCCeEEEEeC--CEEEEECC
Confidence            42110     000111112232222221111        1378889999886555443  56888774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.62  E-value=0.014  Score=29.90  Aligned_cols=31  Identities=16%  Similarity=0.115  Sum_probs=25.7

Q ss_pred             CceeEEEcCCCC---eEEEecCCCeEEEEecCCC
Q 023643          161 ENNAIAVDPQGG---AIFSAAGDSCAYCWDVESS  191 (279)
Q Consensus       161 ~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~  191 (279)
                      +++++.|+|...   +|+.+-.-+.|.++|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478999998544   8888888899999999953

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.027  Score=50.00  Aligned_cols=154  Identities=8%  Similarity=-0.007  Sum_probs=90.4

Q ss_pred             cceEEEEECCCCCCCCCEEEEe--cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIA--SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      -++..+...+    |+...++.  +.+-.|..||+.+-.........+        ....++.........++.|+|.-.
T Consensus       101 ~pi~~~v~~~----D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~p--------l~~s~ts~ek~vf~~~~~wnP~vp  168 (1405)
T KOG3630|consen  101 IPIVIFVCFH----DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVP--------LKNSATSFEKPVFQLKNVWNPLVP  168 (1405)
T ss_pred             ccceEEEecc----CCceEEEEEecCCceEEEEehHhhhhhhhhhccc--------cccccchhccccccccccccCCcc
Confidence            3455566666    65555443  333478899987632211100000        000111112234466788998765


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                       ...+.+..|+.|++..+...........+.                         ...++++|+|.|+.+++|...|++
T Consensus       169 -~n~av~l~dlsl~V~~~~~~~~~v~s~p~t-------------------------~~~Tav~WSprGKQl~iG~nnGt~  222 (1405)
T KOG3630|consen  169 -LNSAVDLSDLSLRVKSTKQLAQNVTSFPVT-------------------------NSQTAVLWSPRGKQLFIGRNNGTE  222 (1405)
T ss_pred             -chhhhhccccchhhhhhhhhhhhhcccCcc-------------------------cceeeEEeccccceeeEecCCCeE
Confidence             356777889999988865321111110000                         126899999999999999999999


Q ss_pred             EEEecCCCcEEEEeecC----CcceEEEEEcCCCcEEEE
Q 023643          184 YCWDVESSRIKMVFKGH----SDYLHCIVARNSTNQIVT  218 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~  218 (279)
                      .-|-.. .+.+..+.+.    ...|.+|+|-....++++
T Consensus       223 vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  223 VQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             EEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            999764 4444444321    367999999876666554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.61  E-value=0.2  Score=37.86  Aligned_cols=109  Identities=11%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEe-cCCCcEEE-Eeec--CCcceEEEEEcCCCcEEEEec---CCCeEEEEeCC---
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWD-VESSRIKM-VFKG--HSDYLHCIVARNSTNQIVTGS---EDGTARIWDCK---  231 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~-~~~~--~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~---  231 (279)
                      +..-.|++++...++...+...+++. ..++.... ....  -...|..+.++|||..++...   .++.|.+=-+.   
T Consensus        68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen   68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence            46678999977666666666666663 33332222 1211  112899999999998876655   35777766443   


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      .+.......+..  ........+..++|.+++.+++.+...
T Consensus       148 ~g~~~~l~~~~~--~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  148 DGVPRRLTGPRR--VAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             CCCcceeccceE--ecccccCcceeeeecCCCEEEEEeCCC
Confidence            221111111100  001234578999999999887766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.59  E-value=0.2  Score=43.17  Aligned_cols=113  Identities=10%  Similarity=0.044  Sum_probs=73.1

Q ss_pred             CceeEEEcC--CCCeEEEecCCCeEEEEecCC-------C-------------cEEEEeecCCcceEEEEEc--CCCcEE
Q 023643          161 ENNAIAVDP--QGGAIFSAAGDSCAYCWDVES-------S-------------RIKMVFKGHSDYLHCIVAR--NSTNQI  216 (279)
Q Consensus       161 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~i~~~--~~~~~l  216 (279)
                      .|+.+....  ....|+.+..||.|.+|.+++       .             ++...+. -....+.++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            466665543  445788899999999997631       0             0112222 23467899998  778889


Q ss_pred             EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC-----C-EEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-----S-WLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~-~l~~~~~d~~i~~wd  279 (279)
                      |+++....|.||-............ +    ..+...|.+|+|-++.     . .|++++-.|.+.+|+
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~-s----~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVP-S----HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEecCCceEEEEEEecccccccccc-c----cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            9998888888886654311111110 0    2355678999997643     2 788888889887763

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.55  E-value=0.22  Score=37.56  Aligned_cols=175  Identities=17%  Similarity=0.261  Sum_probs=93.6

Q ss_pred             EECCCCCCCCCEEEEecCC-----CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           32 VWGPSKDGSPDTIVIASSD-----GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        32 ~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      .|||    ||.+|.+.-+|     |.|-|||....                  ...+..+..|.-....+.|.+++.  .
T Consensus       120 vfs~----dG~~LYATEndfd~~rGViGvYd~r~~------------------fqrvgE~~t~GiGpHev~lm~DGr--t  175 (366)
T COG3490         120 VFSP----DGRLLYATENDFDPNRGVIGVYDAREG------------------FQRVGEFSTHGIGPHEVTLMADGR--T  175 (366)
T ss_pred             ccCC----CCcEEEeecCCCCCCCceEEEEecccc------------------cceecccccCCcCcceeEEecCCc--E
Confidence            5888    89998776443     67999999864                  556667777777778899999997  6


Q ss_pred             EEEeeCCCcEEEe-ecCCCccCcceeeeccCcccceEEeecCCC-----CCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643          107 LLSCGDDGRICGW-RWKEFTESKVPINLQGNHVKPVLDLVNHQH-----KGPWGALSPVPENNAIAVDPQGGAIFSAAGD  180 (279)
Q Consensus       107 l~s~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  180 (279)
                      ++.+.  |-|... |...     ....+  ...+|-+.+.....     +.......+.-.|+.++..+++...+.+-..
T Consensus       176 lvvan--GGIethpdfgR-----~~lNl--dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         176 LVVAN--GGIETHPDFGR-----TELNL--DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             EEEeC--CceecccccCc-----cccch--hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence            66553  445544 2211     00000  01111111111000     0001111122246777777777655543222


Q ss_pred             Ce-----EEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCceEEEe
Q 023643          181 SC-----AYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       181 ~~-----i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      |.     -.+=-...++++.-+.       .....|-+|+.+.+..++ +++-..+...+||..+|..+..-
T Consensus       247 G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         247 GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            11     1111112233333222       123467788887654554 44445566789999999877654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.53  E-value=0.083  Score=43.20  Aligned_cols=101  Identities=8%  Similarity=0.020  Sum_probs=62.2

Q ss_pred             ceeEEEcCCCCeEEEe-cC----CCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCC-----------Ce
Q 023643          162 NNAIAVDPQGGAIFSA-AG----DSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSED-----------GT  224 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~-~~----d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d-----------~~  224 (279)
                      +....++|++++++.+ +.    ...++++|+.+++.+... ...  .-..+.|.++++.|+....+           ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467899999987754 22    245999999999776532 221  12349999997776554432           23


Q ss_pred             EEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          225 ARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       225 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      |+.|++.+....  ..+..      .........+..++|+++|+..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~------~~~~~~~~~~~~s~d~~~l~i~~  245 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEE------PDEPFWFVSVSRSKDGRYLFISS  245 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-------TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred             EEEEECCCChHhCeeEEee------cCCCcEEEEEEecCcccEEEEEE
Confidence            788888776433  33322      12222255788899999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.50  E-value=0.19  Score=36.29  Aligned_cols=162  Identities=15%  Similarity=0.194  Sum_probs=82.6

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC------c
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG------R  115 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~  115 (279)
                      +.|+.+...+.|.+|++...+                 .++...|..- +.|..+.++..|+  +|+|-=.+.      .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~-----------------~~~~~~F~Tv-~~V~~l~y~~~GD--YlvTlE~k~~~~~~~f   88 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE-----------------CPLLCTFSTV-GRVLQLVYSEAGD--YLVTLEEKNKRSPVDF   88 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC-----------------CceeEEEcch-hheeEEEeccccc--eEEEEEeecCCccceE
Confidence            455454666789999998432                 3444455433 7899999999998  999864332      4


Q ss_pred             EEEe-ecCCC--ccCcceeeeccCcccceEEeecCCCCC--ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC
Q 023643          116 ICGW-RWKEF--TESKVPINLQGNHVKPVLDLVNHQHKG--PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES  190 (279)
Q Consensus       116 i~iw-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  190 (279)
                      +|+| +++..  ..........|+...+.   .......  .+-.+.....+.+++..|-..-|++|+ ++++.+|.+..
T Consensus        89 vR~Y~NWr~~~~~~~~v~vRiaG~~v~~~---~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen   89 VRAYFNWRSQKEENSPVRVRIAGHRVTPS---FNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEEEEEhhhhcccCCcEEEEEcccccccC---CCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence            5543 22221  11111112222111100   0000000  000111223468999988655666666 47789998764


Q ss_pred             CcE-EE-----Eee-----cCCc-ceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          191 SRI-KM-----VFK-----GHSD-YLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       191 ~~~-~~-----~~~-----~~~~-~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      ... ..     .|.     .|.+ .+..+++.  +.|+|..+ +-.++++.+
T Consensus       165 ~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  165 QTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            433 11     111     1111 23455554  56776655 445666554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.47  E-value=0.21  Score=36.51  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             eeEEEcCCCCeEE-EecCCCeEEEEe--cCCCc-----EEEEeecC---C-cceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          163 NAIAVDPQGGAIF-SAAGDSCAYCWD--VESSR-----IKMVFKGH---S-DYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       163 ~~~~~~~~~~~l~-~~~~d~~i~i~d--~~~~~-----~~~~~~~~---~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      +.++|+.+.+.++ +-+.+-.|.-||  ..+|.     .+..++..   . -..-.++...+|++.++.-..++|...|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            5788988777654 455677787777  55543     23333211   1 11234556678899888888999999999


Q ss_pred             CCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      .+|+.+..+.        -....|+++||--
T Consensus       241 ~tGK~L~eik--------lPt~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIK--------LPTPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEE--------cCCCceEEEEecC
Confidence            9999999984        4456799999964

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.46  E-value=0.27  Score=37.56  Aligned_cols=211  Identities=16%  Similarity=0.215  Sum_probs=118.2

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-----CCccCeEEEEecC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-----GHDGPAYDVKFYG  100 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~  100 (279)
                      ..-+.|+++|    .+.+-++....+...+||.+...+...        .    ...+-++.     ......+.+.|+.
T Consensus        23 ~N~WGia~~p----~~~~WVadngT~~~TlYdg~~~~~~g~--------~----~~L~vtiP~~~~~~~~~~PTGiVfN~   86 (336)
T TIGR03118        23 RNAWGLSYRP----GGPFWVANTGTGTATLYVGNPDTQPLV--------Q----DPLVVVIPAPPPLAAEGTPTGQVFNG   86 (336)
T ss_pred             cccceeEecC----CCCEEEecCCcceEEeecCCcccccCC--------c----cceEEEecCCCCCCCCCCccEEEEeC
Confidence            3457899999    788888888889999999973211100        0    00011111     1123456666664


Q ss_pred             CCC----------ceEEEEeeCCCcEEEeecCCCccC--cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643          101 GNE----------DALLLSCGDDGRICGWRWKEFTES--KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus       101 ~~~----------~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      ...          ...++.+++||+|.-|...-....  .....+.......++                    ..+++.
T Consensus        87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavY--------------------kGLAi~  146 (336)
T TIGR03118        87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVY--------------------KGLAVG  146 (336)
T ss_pred             CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCccee--------------------eeeEEe
Confidence            322          024788899999999996433221  111222221122222                    244444


Q ss_pred             --CCCCeEEEe-cCCCeEEEEecCCCcEEE--EeecC----------------CcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643          169 --PQGGAIFSA-AGDSCAYCWDVESSRIKM--VFKGH----------------SDYLHCIVARNSTNQIVTGSEDGTARI  227 (279)
Q Consensus       169 --~~~~~l~~~-~~d~~i~i~d~~~~~~~~--~~~~~----------------~~~i~~i~~~~~~~~l~~~~~d~~i~v  227 (279)
                        ..+.+|+.+ -..++|.+||-.-.+...  .|...                .-.|+-..-.++++.=+.|..-|.|-+
T Consensus       147 ~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~Vdv  226 (336)
T TIGR03118       147 PTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNV  226 (336)
T ss_pred             ecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEE
Confidence              335566554 457899999865322210  11100                001222222333444455666789999


Q ss_pred             EeCCCCceEEEecCCccccccCcceeeeEEEEcC------CCCEEEEEcCcceEEeCC
Q 023643          228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA------SESWLVRVRATNYVILFS  279 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~wd  279 (279)
                      ||+ .|+.++++..      .+.-..-+.|+..|      .+.+|+---.||+|..||
T Consensus       227 Fd~-~G~l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD  277 (336)
T TIGR03118       227 FTL-NGQLLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYD  277 (336)
T ss_pred             EcC-CCcEEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEec
Confidence            996 6888888743      34455667888766      467777777799999887

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.44  E-value=0.15  Score=44.53  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=52.1

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCC---------CcE---EEEe--------ecCCcceEEEEEcCC---CcEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVES---------SRI---KMVF--------KGHSDYLHCIVARNS---TNQI  216 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~---~~~~--------~~~~~~i~~i~~~~~---~~~l  216 (279)
                      -.|..|.++|+|.+++..+..|...+.=.+.         ++.   .+++        ..+...|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3589999999999999888766544432221         111   1111        123457899999995   5889


Q ss_pred             EEecCCCeEEEEeCCCC
Q 023643          217 VTGSEDGTARIWDCKSG  233 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~  233 (279)
                      +.-..|+++|+||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            99999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=96.44  E-value=0.39  Score=40.84  Aligned_cols=66  Identities=8%  Similarity=0.053  Sum_probs=34.8

Q ss_pred             CCCeEEEecCC------CeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEecCCC--------eEEEEeCCCC
Q 023643          170 QGGAIFSAAGD------SCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTGSEDG--------TARIWDCKSG  233 (279)
Q Consensus       170 ~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~--------~i~vwd~~~~  233 (279)
                      ++..++.|+.+      ..+..||+.+.+-..  .+....... +++ ..++..++.|+.++        .+.+||..++
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            45555666532      458889987654322  111111111 222 23566777776432        3888998877


Q ss_pred             ceEE
Q 023643          234 KCIK  237 (279)
Q Consensus       234 ~~~~  237 (279)
                      +...
T Consensus       467 ~W~~  470 (534)
T PHA03098        467 KWTE  470 (534)
T ss_pred             ceee
Confidence            6543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.39  E-value=0.6  Score=40.91  Aligned_cols=102  Identities=10%  Similarity=0.113  Sum_probs=56.9

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC-CCcccccccCCcccc-eeeeccccccccCCccCeEEEEecCCCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS-CISKLPLGLSNSKVQ-QLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      -.|..+..+|    +|.+||..+..|. .|-.+.. ......+.-...... .............+...|..+.|+|.+.
T Consensus        85 f~v~~i~~n~----~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~  159 (717)
T PF10168_consen   85 FEVHQISLNP----TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE  159 (717)
T ss_pred             eeEEEEEECC----CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence            4688888999    8999999888764 4444432 111100100000000 0000000011123456799999999751


Q ss_pred             -ceEEEEeeCCCcEEEeecCCCccCcceee
Q 023643          104 -DALLLSCGDDGRICGWRWKEFTESKVPIN  132 (279)
Q Consensus       104 -~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  132 (279)
                       +..|+.-..|+++|+||+...........
T Consensus       160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence             23888888999999999975444333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.38  E-value=0.15  Score=38.63  Aligned_cols=117  Identities=9%  Similarity=0.085  Sum_probs=78.7

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +.++.|+|+.+.|++..+...-.++=..+|+.++++.-. -...-.|.+..++++.++-=.++.+.++.+........+.
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~  167 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK  167 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence            689999999999998888777777766779999887521 1223467787788888887788888888776553322222


Q ss_pred             CCc-c-ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          241 PVK-D-KQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       241 ~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ... . ......+....+++|+|..+.|..+-+-.-+.+|
T Consensus       168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~  207 (316)
T COG3204         168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIF  207 (316)
T ss_pred             ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEE
Confidence            100 0 0001225677899999988888777655544443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.35  E-value=0.34  Score=37.52  Aligned_cols=155  Identities=12%  Similarity=0.050  Sum_probs=74.7

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      .+.+..+..++    ++.+++++..-....-|+.....                 .++  .-+.-..+|..+.|.|++. 
T Consensus       144 ~gs~~~~~r~~----dG~~vavs~~G~~~~s~~~G~~~-----------------w~~--~~r~~~~riq~~gf~~~~~-  199 (302)
T PF14870_consen  144 SGSINDITRSS----DGRYVAVSSRGNFYSSWDPGQTT-----------------WQP--HNRNSSRRIQSMGFSPDGN-  199 (302)
T ss_dssp             ---EEEEEE-T----TS-EEEEETTSSEEEEE-TT-SS------------------EE--EE--SSS-EEEEEE-TTS--
T ss_pred             cceeEeEEECC----CCcEEEEECcccEEEEecCCCcc-----------------ceE--EccCccceehhceecCCCC-
Confidence            46688888888    89999888776666677765310                 111  1122356799999999975 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                       +.+ ....|.|+.=+....     ...... ...+              .......+..++|.+++...++|+. |.+ 
T Consensus       200 -lw~-~~~Gg~~~~s~~~~~-----~~~w~~-~~~~--------------~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-  255 (302)
T PF14870_consen  200 -LWM-LARGGQIQFSDDPDD-----GETWSE-PIIP--------------IKTNGYGILDLAYRPPNEIWAVGGS-GTL-  255 (302)
T ss_dssp             -EEE-EETTTEEEEEE-TTE-----EEEE----B-T--------------TSS--S-EEEEEESSSS-EEEEEST-T-E-
T ss_pred             -EEE-EeCCcEEEEccCCCC-----cccccc-ccCC--------------cccCceeeEEEEecCCCCEEEEeCC-ccE-
Confidence             444 448888887661110     000000 0000              0000012678899988777776654 433 


Q ss_pred             EEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          185 CWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       185 i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                      +...+.|+.=..-   ..-...++.|.|.++.+-++.| .+|.|--|
T Consensus       256 ~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  256 LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            3344444433322   2234567888887665555554 67776544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.14  E-value=0.11  Score=42.07  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=58.8

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE----EEEcCC--------------Cc-EEEEec
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC----IVARNS--------------TN-QIVTGS  220 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~----i~~~~~--------------~~-~l~~~~  220 (279)
                      ..+.++..+|.+++.++..+-|.|.++|+.++..++.+++..+.=..    ..-...              .. +++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            35789999999998888888899999999999999988876543111    111000              11 234456


Q ss_pred             CCCeEEEEeCCCCceEEEec
Q 023643          221 EDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .-|.|.||.+++|..+..+.
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEE
Confidence            68889999999998888774

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.79  E-value=0.76  Score=36.67  Aligned_cols=113  Identities=13%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             eEEEcCCCCeEEE-----ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---------------
Q 023643          164 AIAVDPQGGAIFS-----AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---------------  223 (279)
Q Consensus       164 ~~~~~~~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---------------  223 (279)
                      -=-|.|+|..+.-     ++.+..|.-+|+.+++.......  .+....-.+++|++++-=+.|.               
T Consensus       242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~  319 (386)
T PF14583_consen  242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND  319 (386)
T ss_dssp             EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE------------------
T ss_pred             cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence            3358888885543     23355688889888765443221  2334555667888876544332               


Q ss_pred             -eEEEEeCCCCceEEEecCCcc-ccccCcce-eeeEEEEcCCCCEEE-EEcCcceEEeC
Q 023643          224 -TARIWDCKSGKCIKVIDPVKD-KQLKGVIS-CVSCITLDASESWLV-RVRATNYVILF  278 (279)
Q Consensus       224 -~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d~~i~~w  278 (279)
                       .|+++++..++.......... ..+.++.. .=....|+||+++++ ++...|...||
T Consensus       320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence             466788876654322111000 00011110 114578999999766 55556765554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.70  E-value=1.2  Score=38.22  Aligned_cols=66  Identities=14%  Similarity=0.154  Sum_probs=38.3

Q ss_pred             CCCeEEEecCCC-----eEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCC------eEEEEeCCCCceE
Q 023643          170 QGGAIFSAAGDS-----CAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDG------TARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~d~-----~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~  236 (279)
                      +|...++|+.||     ++-.||..+.+  .+..+.......-.+.  -+|...++|+.++      ++..||..+++..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            566778888875     46778877643  2222221111111122  2578888888554      4778888877654


Q ss_pred             E
Q 023643          237 K  237 (279)
Q Consensus       237 ~  237 (279)
                      .
T Consensus       458 ~  458 (571)
T KOG4441|consen  458 L  458 (571)
T ss_pred             e
Confidence            3

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.62  E-value=0.68  Score=34.88  Aligned_cols=133  Identities=15%  Similarity=0.147  Sum_probs=75.3

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeec
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRW  121 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~  121 (279)
                      .+..-.-.++...+||..+                   .+.+..+. ..+.=..++  .+++  .|+.......++++|.
T Consensus       101 ~l~qLTWk~~~~f~yd~~t-------------------l~~~~~~~-y~~EGWGLt--~dg~--~Li~SDGS~~L~~~dP  156 (264)
T PF05096_consen  101 KLYQLTWKEGTGFVYDPNT-------------------LKKIGTFP-YPGEGWGLT--SDGK--RLIMSDGSSRLYFLDP  156 (264)
T ss_dssp             EEEEEESSSSEEEEEETTT-------------------TEEEEEEE--SSS--EEE--ECSS--CEEEE-SSSEEEEE-T
T ss_pred             EEEEEEecCCeEEEEcccc-------------------ceEEEEEe-cCCcceEEE--cCCC--EEEEECCccceEEECC
Confidence            4445556788999999987                   44444443 234556676  3444  5665555778999997


Q ss_pred             CCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--
Q 023643          122 KEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--  199 (279)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--  199 (279)
                      .+......+......  .++.                  .++-+.|- +|...|=.=....|...|..+|+.+..+..  
T Consensus       157 ~~f~~~~~i~V~~~g--~pv~------------------~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~  215 (264)
T PF05096_consen  157 ETFKEVRTIQVTDNG--RPVS------------------NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSG  215 (264)
T ss_dssp             TT-SEEEEEE-EETT--EE---------------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred             cccceEEEEEEEECC--EECC------------------CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence            765433322222211  1111                  24556665 455555555677888999999988876521  


Q ss_pred             ----------C---CcceEEEEEcCC-CcEEEEe
Q 023643          200 ----------H---SDYLHCIVARNS-TNQIVTG  219 (279)
Q Consensus       200 ----------~---~~~i~~i~~~~~-~~~l~~~  219 (279)
                                +   ..-...||+.|. +++++||
T Consensus       216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             hhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                      1   245789999986 4556666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=95.59  E-value=1.3  Score=37.81  Aligned_cols=64  Identities=8%  Similarity=0.092  Sum_probs=34.7

Q ss_pred             CCCeEEEecCC--------CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCc
Q 023643          170 QGGAIFSAAGD--------SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGK  234 (279)
Q Consensus       170 ~~~~l~~~~~d--------~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  234 (279)
                      ++..++.|+.+        ..+.+||..+.+-...  +.........+.+  +++.++.|+.+     +.+.+||..+.+
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            44555556532        2388899876543321  1111111112222  56777777754     468888887765


Q ss_pred             e
Q 023643          235 C  235 (279)
Q Consensus       235 ~  235 (279)
                      .
T Consensus       515 W  515 (534)
T PHA03098        515 W  515 (534)
T ss_pred             E
Confidence            4

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.46  E-value=1.2  Score=36.57  Aligned_cols=159  Identities=8%  Similarity=0.075  Sum_probs=80.2

Q ss_pred             eEEEEECCCCCCCCCEEEEe-cCCC----cEEEEeCCCCCcccccccCCcccceeeeccccc-cccCCccCeEEEEecCC
Q 023643           28 VFRTVWGPSKDGSPDTIVIA-SSDG----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG-FLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~  101 (279)
                      +....++|    +++++|.+ +..|    .|+++|+.++                   +.+. .+..  .....+.|.++
T Consensus       126 ~~~~~~Sp----dg~~la~~~s~~G~e~~~l~v~Dl~tg-------------------~~l~d~i~~--~~~~~~~W~~d  180 (414)
T PF02897_consen  126 LGGFSVSP----DGKRLAYSLSDGGSEWYTLRVFDLETG-------------------KFLPDGIEN--PKFSSVSWSDD  180 (414)
T ss_dssp             EEEEEETT----TSSEEEEEEEETTSSEEEEEEEETTTT-------------------EEEEEEEEE--EESEEEEECTT
T ss_pred             eeeeeECC----CCCEEEEEecCCCCceEEEEEEECCCC-------------------cCcCCcccc--cccceEEEeCC
Confidence            34678899    89988865 3333    5999999984                   2221 1111  11223999999


Q ss_pred             CCceEEEEeeCC----------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643          102 NEDALLLSCGDD----------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG  171 (279)
Q Consensus       102 ~~~~~l~s~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  171 (279)
                      ++ .++.+...+          ..|+.|++.+.... ....+.......                    ....+..++++
T Consensus       181 ~~-~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~--------------------~~~~~~~s~d~  238 (414)
T PF02897_consen  181 GK-GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPF--------------------WFVSVSRSKDG  238 (414)
T ss_dssp             SS-EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTT--------------------SEEEEEE-TTS
T ss_pred             CC-EEEEEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCc--------------------EEEEEEecCcc
Confidence            87 234443222          12566666432211 112221111110                    02577889999


Q ss_pred             CeEEEecC---C-CeEEEEecCCC-----cEEEEeecCCcceEEEEEcCCCcEEEEe---cCCCeEEEEeCCCCc
Q 023643          172 GAIFSAAG---D-SCAYCWDVESS-----RIKMVFKGHSDYLHCIVARNSTNQIVTG---SEDGTARIWDCKSGK  234 (279)
Q Consensus       172 ~~l~~~~~---d-~~i~i~d~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~---~~d~~i~vwd~~~~~  234 (279)
                      ++++....   + ..+.+.|+..+     ..........+....+... .+.+++..   ...+.|.-.++....
T Consensus       239 ~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  239 RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence            98765322   3 46888898864     3333333223333334333 34444333   234567777777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.45  E-value=1.8  Score=38.67  Aligned_cols=102  Identities=5%  Similarity=0.083  Sum_probs=61.3

Q ss_pred             eEEEcCC-CCeEEEecC----------CCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          164 AIAVDPQ-GGAIFSAAG----------DSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       164 ~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      ++.|..| +.++++|+.          .|.|.++.......++....  -.+.+.++..- +|+++|  +-...|++|+.
T Consensus       779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA--~In~~vrLye~  855 (1096)
T KOG1897|consen  779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA--GINQSVRLYEW  855 (1096)
T ss_pred             eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE--ecCcEEEEEEc
Confidence            3345555 446666643          46777777665333332221  23445554321 456655  35778999999


Q ss_pred             CCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643          231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI  276 (279)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  276 (279)
                      .+.+.++.-        ..+..++..+...-.|..++.|.--+.+.
T Consensus       856 t~~~eLr~e--------~~~~~~~~aL~l~v~gdeI~VgDlm~Sit  893 (1096)
T KOG1897|consen  856 TTERELRIE--------CNISNPIIALDLQVKGDEIAVGDLMRSIT  893 (1096)
T ss_pred             cccceehhh--------hcccCCeEEEEEEecCcEEEEeeccceEE
Confidence            888666554        45666777777777888888886555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.44  E-value=0.13  Score=37.93  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             EcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc-ccc-------CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          209 ARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK-QLK-------GVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       209 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +..+++++++-+.+|.+++||+.+++.+..-.  ... -+.       .....|..+.++.+|.-|++=+ +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            34468899999999999999999887654320  100 011       3556788899998888777654 46667765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.42  E-value=0.75  Score=37.97  Aligned_cols=79  Identities=13%  Similarity=0.067  Sum_probs=53.5

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecC---------CCcEEEEee-----------cCCcceEEEEEcCCC---cEEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVE---------SSRIKMVFK-----------GHSDYLHCIVARNST---NQIV  217 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~~-----------~~~~~i~~i~~~~~~---~~l~  217 (279)
                      .|..+..++.|..++.++.+|.+.++=.+         .++..-..+           ...-.+..++|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            36778899999999999989977665322         233222111           111245678899964   6777


Q ss_pred             EecCCCeEEEEeCCCCceEEEe
Q 023643          218 TGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       218 ~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      .-+.|+.||+||+.....+...
T Consensus       185 iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             EEecCcEEEEEecCCcchhhcc
Confidence            7888999999999876655443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.32  E-value=0.29  Score=36.03  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             EEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-------e-------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-------K-------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      .+...+.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            34557788999999999999999987665432       1       2446788888888888877765 5788999876


Q ss_pred             CCceEEEe
Q 023643          232 SGKCIKVI  239 (279)
Q Consensus       232 ~~~~~~~~  239 (279)
                      -+.-+...
T Consensus        96 L~~W~~vs  103 (219)
T PF07569_consen   96 LGCWIRVS  103 (219)
T ss_pred             cceeEEec
Confidence            55544433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.13  E-value=0.98  Score=35.76  Aligned_cols=104  Identities=10%  Similarity=0.058  Sum_probs=55.0

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE---EEEe----ecCCcceEEEEEcCC----CcEEEEecCC--------
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI---KMVF----KGHSDYLHCIVARNS----TNQIVTGSED--------  222 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~----~~~~~~i~~i~~~~~----~~~l~~~~~d--------  222 (279)
                      .+.|+|.|+++++++ ...|.|++++ ..+..   +..+    ......+..++++|+    +...++.+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            478999999876664 5599999999 33433   2222    123457899999994    4444443321        


Q ss_pred             CeEEEEeCCCC-------ceEE-EecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          223 GTARIWDCKSG-------KCIK-VIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       223 ~~i~vwd~~~~-------~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      ..|.-|.+..+       +.+. .+....   ...|  .-..|+|.|||.+.++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~---~~~H--~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTS---SGNH--NGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-C---SSSS---EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCC---CCCC--CCccccCCCCCcEEEEeCCC
Confidence            23433443332       1111 111100   0233  34569999999776665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.07  E-value=1.4  Score=35.23  Aligned_cols=81  Identities=17%  Similarity=0.230  Sum_probs=40.1

Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC----CCe-EEEEeCCC-CceEEEecCCccccccCccee
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE----DGT-ARIWDCKS-GKCIKVIDPVKDKQLKGVISC  253 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d~~-i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~  253 (279)
                      ...|.-.|+.+|+....+. -...+..+.|+|....+++-+.    +.. -|||-+++ +.....+..+.      ....
T Consensus       167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~------~~e~  239 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM------EGES  239 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---------TTEE
T ss_pred             CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC------CCcc
Confidence            3567777888887766665 4567889999996444444333    222 36665543 44444443221      1234


Q ss_pred             eeEEEEcCCCCEEE
Q 023643          254 VSCITLDASESWLV  267 (279)
Q Consensus       254 v~~~~~~~~~~~l~  267 (279)
                      +..=-|.|||..|.
T Consensus       240 ~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  240 VGHEFWVPDGSTIW  253 (386)
T ss_dssp             EEEEEE-TTSS-EE
T ss_pred             cccccccCCCCEEE
Confidence            44445777776554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.90  E-value=0.0049  Score=49.36  Aligned_cols=145  Identities=15%  Similarity=0.179  Sum_probs=95.4

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      -....|-|    .+.-++.++.+..+..||-..                    +.+... ...+....++|..+++ ..+
T Consensus        37 pi~~~w~~----e~~nlavaca~tiv~~YD~ag--------------------q~~le~-n~tg~aldm~wDkegd-vla   90 (615)
T KOG2247|consen   37 PIIHRWRP----EGHNLAVACANTIVIYYDKAG--------------------QVILEL-NPTGKALDMAWDKEGD-VLA   90 (615)
T ss_pred             cceeeEec----CCCceehhhhhhHHHhhhhhc--------------------ceeccc-CCchhHhhhhhccccc-hhh
Confidence            33456777    555588888888899998664                    111111 1345566788887776 355


Q ss_pred             EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEe
Q 023643          108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWD  187 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  187 (279)
                      +.+-..+.+.+||++.....+  ....+.+..                       .-+.|++....++.+...|.+.+|+
T Consensus        91 vlAek~~piylwd~n~eytqq--LE~gg~~s~-----------------------sll~wsKg~~el~ig~~~gn~viyn  145 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQ--LESGGTSSK-----------------------SLLAWSKGTPELVIGNNAGNIVIYN  145 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHH--HhccCcchH-----------------------HHHhhccCCccccccccccceEEEe
Confidence            667778999999986532211  122222221                       2257888888888888999999999


Q ss_pred             cCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643          188 VESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  224 (279)
                      ..+.+.+-..-.|...++++++.+.+. .+.++.|..
T Consensus       146 hgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  146 HGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             ccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            887766655545888899999988654 444444443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.86  E-value=1.8  Score=35.37  Aligned_cols=146  Identities=9%  Similarity=0.001  Sum_probs=76.4

Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCCe
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDSC  182 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~  182 (279)
                      ..+++||..|.++||+...........-+..+-..|+..+.                  +=.|.+  +...|++ =.-..
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~------------------~G~F~s~~~~~~LaV-LhP~k   98 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVE------------------CGKFVSGSEDLQLAV-LHPRK   98 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEE------------------eccccCCCCcceEEE-ecCCE
Confidence            48999999999999998543212111222222222332221                  112211  2223443 33466


Q ss_pred             EEEEecCC--Cc-------EEEEeecCC--cceEEEEEcC----C-CcEEEEecCCCeEEEEeCCCCceEEEecCCcccc
Q 023643          183 AYCWDVES--SR-------IKMVFKGHS--DYLHCIVARN----S-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ  246 (279)
Q Consensus       183 i~i~d~~~--~~-------~~~~~~~~~--~~i~~i~~~~----~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  246 (279)
                      +.+|.+..  +.       .+..+..|.  .....++.-|    . ..+|+.-+.||.+.+|+-+.-.....++.     
T Consensus        99 l~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----  173 (418)
T PF14727_consen   99 LSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----  173 (418)
T ss_pred             EEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----
Confidence            77776631  11       111222222  2223333333    2 36788899999999999665443444421     


Q ss_pred             ccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          247 LKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       247 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                          .---..++|.+....+++++.+..+.-|
T Consensus       174 ----~llPgPl~Y~~~tDsfvt~sss~~l~~Y  201 (418)
T PF14727_consen  174 ----FLLPGPLCYCPRTDSFVTASSSWTLECY  201 (418)
T ss_pred             ----CCCCcCeEEeecCCEEEEecCceeEEEe
Confidence                1112345778877888888877766654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.81  E-value=1.8  Score=35.29  Aligned_cols=193  Identities=11%  Similarity=0.215  Sum_probs=99.2

Q ss_pred             CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEE
Q 023643           41 PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICG  118 (279)
Q Consensus        41 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  118 (279)
                      .+++.+=+.||.+.+|+-+..                   ...+.+..  ..+   .+.|++..+  .|++++.+..+..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~-------------------~f~~~lp~~llPg---Pl~Y~~~tD--sfvt~sss~~l~~  200 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESF-------------------AFSRFLPDFLLPG---PLCYCPRTD--SFVTASSSWTLEC  200 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcE-------------------EEEEEcCCCCCCc---CeEEeecCC--EEEEecCceeEEE
Confidence            467888899999999998762                   11112221  233   467888877  8999999999998


Q ss_pred             eecCCCccCccee---------eeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC
Q 023643          119 WRWKEFTESKVPI---------NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE  189 (279)
Q Consensus       119 w~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  189 (279)
                      |............         ...+....+-|.+.-.+..-         .|..+.++.....+++-+ ...+.+.+. 
T Consensus       201 Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l---------~i~v~~~~~~~~~IvvLg-er~Lf~l~~-  269 (418)
T PF14727_consen  201 YKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL---------DIQVVRFSSSESDIVVLG-ERSLFCLKD-  269 (418)
T ss_pred             ecHHHhhhccccccccccccccccccccccceeEEECCceeE---------EEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence            8864321111100         00222333333333222211         133444443333444433 356666665 


Q ss_pred             CCcEEEEeecCCcceEEEE-EcC----CC---cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          190 SSRIKMVFKGHSDYLHCIV-ARN----ST---NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       190 ~~~~~~~~~~~~~~i~~i~-~~~----~~---~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      +|+.....+- +....|++ |..    .+   ..++.++.++++.||.  ..+.+..-..      ..-.-.|.-..|..
T Consensus       270 ~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l------~~~PVal~v~~~~~  340 (418)
T PF14727_consen  270 NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQL------PHVPVALSVANFNG  340 (418)
T ss_pred             CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCC------CCCCEEEEecccCC
Confidence            4655544442 32223332 221    22   2588899999999996  3444443321      11111222222333


Q ss_pred             CCCEEEEEcCcceEEe
Q 023643          262 SESWLVRVRATNYVIL  277 (279)
Q Consensus       262 ~~~~l~~~~~d~~i~~  277 (279)
                      -...|++=+.+|.+.+
T Consensus       341 ~~G~IV~Ls~~G~L~v  356 (418)
T PF14727_consen  341 LKGLIVSLSDEGQLSV  356 (418)
T ss_pred             CCceEEEEcCCCcEEE
Confidence            3455666677777654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.72  E-value=1.4  Score=33.42  Aligned_cols=148  Identities=15%  Similarity=0.116  Sum_probs=84.2

Q ss_pred             ceEEEEECCCCCCCCCEEEEec---CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           27 TVFRTVWGPSKDGSPDTIVIAS---SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      .+.+.+.++    +++.+|...   ....+.++....                    .....+.+  ..+..-.|.+++.
T Consensus        25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~~~~--------------------~~~~~~~g--~~l~~PS~d~~g~   78 (253)
T PF10647_consen   25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGPAGG--------------------PVRPVLTG--GSLTRPSWDPDGW   78 (253)
T ss_pred             cccceEECC----CCCeEEEEEEcCCCCEEEEEcCCC--------------------cceeeccC--CccccccccCCCC
Confidence            688999999    888777655   333455554432                    11111222  2577788999975


Q ss_pred             ceEEEEeeCCCcEEEee-cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec---C
Q 023643          104 DALLLSCGDDGRICGWR-WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA---G  179 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~  179 (279)
                        ..+....+...+++. .......  .........                    ...|..+.++|||..++...   .
T Consensus        79 --~W~v~~~~~~~~~~~~~~~g~~~--~~~v~~~~~--------------------~~~I~~l~vSpDG~RvA~v~~~~~  134 (253)
T PF10647_consen   79 --VWTVDDGSGGVRVVRDSASGTGE--PVEVDWPGL--------------------RGRITALRVSPDGTRVAVVVEDGG  134 (253)
T ss_pred             --EEEEEcCCCceEEEEecCCCcce--eEEeccccc--------------------CCceEEEEECCCCcEEEEEEecCC
Confidence              555555566666664 1111100  011110000                    00379999999999876655   3


Q ss_pred             CCeEEEEecC---CC------cEEEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643          180 DSCAYCWDVE---SS------RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       180 d~~i~i~d~~---~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  224 (279)
                      ++.|.+--+.   .+      .++.........+..+.|.+++.+++.+...+.
T Consensus       135 ~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  135 GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            5777766543   22      112222233467899999999888776655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.72  E-value=0.34  Score=41.32  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             CCCCeEEEecCCCeEEEEecCC----CcEEEEe--ec--------------------CCcceEEEEEcC----CCcEEEE
Q 023643          169 PQGGAIFSAAGDSCAYCWDVES----SRIKMVF--KG--------------------HSDYLHCIVARN----STNQIVT  218 (279)
Q Consensus       169 ~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~--~~--------------------~~~~i~~i~~~~----~~~~l~~  218 (279)
                      ++...++++..||.+.......    +......  ..                    ..+....+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667888888999988887664    2221111  00                    123345566665    6789999


Q ss_pred             ecCCCeEEEEeCCCCceEEEec
Q 023643          219 GSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       219 ~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA02790 Kelch-like protein; Provisional

Probab=94.53  E-value=2.5  Score=35.52  Aligned_cols=90  Identities=9%  Similarity=-0.052  Sum_probs=44.7

Q ss_pred             CCCeEEEecCC---CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643          170 QGGAIFSAAGD---SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD  244 (279)
Q Consensus       170 ~~~~l~~~~~d---~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  244 (279)
                      ++...+.|+.+   ..+..||.++.+-...  +....... +++ .-+++..+.|+   .+.+||.++++....-..   
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m---  433 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDP---  433 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEcCCC---
Confidence            46666666654   3467888876543221  11111111 221 23466666664   577899887765432211   


Q ss_pred             ccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          245 KQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                         .........+.+  +++..+.|+.+
T Consensus       434 ---~~~r~~~~~~v~--~~~IYviGG~~  456 (480)
T PHA02790        434 ---IYPRDNPELIIV--DNKLLLIGGFY  456 (480)
T ss_pred             ---CCCccccEEEEE--CCEEEEECCcC
Confidence               111112222222  57778888754

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.47  E-value=1.9  Score=34.05  Aligned_cols=110  Identities=9%  Similarity=0.103  Sum_probs=69.7

Q ss_pred             CceeEEEcCCCCeEEEecCCCe------EEEEecCC--C--cEEE-----EeecCCc--------ceEEEEEcCCCcEEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSC------AYCWDVES--S--RIKM-----VFKGHSD--------YLHCIVARNSTNQIV  217 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~------i~i~d~~~--~--~~~~-----~~~~~~~--------~i~~i~~~~~~~~l~  217 (279)
                      .+..|.+.|++..+++.+.++.      +..+++..  +  ..+.     .+....+        -.-+|++.+++.+++
T Consensus        21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i  100 (326)
T PF13449_consen   21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI  100 (326)
T ss_pred             cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence            4688999976667777777777      66666543  1  1111     1111111        233678867888888


Q ss_pred             EecCC------CeEEEEeCCCCceEEEecCCccc-------cccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          218 TGSED------GTARIWDCKSGKCIKVIDPVKDK-------QLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       218 ~~~~d------~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      +.=.+      -.|.-++.. |+....+..+...       .-...+....+++++|+|+.|+++.+
T Consensus       101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen  101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            77667      788888876 7777766433211       11234567899999999997766543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.38  E-value=0.82  Score=38.74  Aligned_cols=60  Identities=15%  Similarity=0.258  Sum_probs=42.4

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +.|.-+|+.+++.+-..+......... ..-.+..++.++.+|.++.+|.++|+.+..++.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            567888888888887765322111111 112456777888899999999999999998854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=1  Score=41.29  Aligned_cols=71  Identities=24%  Similarity=0.328  Sum_probs=49.1

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEE--EEecCCC---c-E----------------EEEee-cCCcceEEEEEcCCCcEEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAY--CWDVESS---R-I----------------KMVFK-GHSDYLHCIVARNSTNQIV  217 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~--i~d~~~~---~-~----------------~~~~~-~~~~~i~~i~~~~~~~~l~  217 (279)
                      .|+|+....+|+.+++|- ||.|+  .|....+   + +                +-.+. .+..+|..+......+.+.
T Consensus       180 ~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY  258 (1311)
T KOG1900|consen  180 SVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILY  258 (1311)
T ss_pred             eEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceee
Confidence            378898788888777655 55443  2222211   1 1                11122 4567999999998889999


Q ss_pred             EecCCCeEEEEeCCC
Q 023643          218 TGSEDGTARIWDCKS  232 (279)
Q Consensus       218 ~~~~d~~i~vwd~~~  232 (279)
                      +-+..|+|++||+..
T Consensus       259 ~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  259 VLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeccCceEEEEEccC
Confidence            999999999999976

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.29  E-value=1.4  Score=36.42  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      ...++++++..|-|++||--..+....+.+-...|..+..+.+|+++++.+ ...+-+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            455899999999999999765555566677778899999999999988766 4456666664

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.24  E-value=2.4  Score=34.18  Aligned_cols=60  Identities=13%  Similarity=0.245  Sum_probs=37.0

Q ss_pred             ceeEEEcCCCCeEEEecC-------------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          162 NNAIAVDPQGGAIFSAAG-------------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      ...+.|.|+|.+.++-+.                   .+.|.-+|...++....-.++ .....++|+|+|+++++-..+
T Consensus       126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            578899999876554331                   145666666654433222232 334689999999888765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=3.7  Score=35.70  Aligned_cols=40  Identities=8%  Similarity=0.038  Sum_probs=32.7

Q ss_pred             CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       201 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+.+..|..||+.++|+--..+|.|.+-+....+....++
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            3567788999999999999999999998887777666665

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.04  E-value=1.8  Score=35.20  Aligned_cols=99  Identities=9%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE----EEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce-
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK----MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC-  235 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-  235 (279)
                      +|.++.|++|.+.+++--.+..|-+++..-.+..    .+.+.....|....|+.+ .-++.-+..| +-+|-+...+. 
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs  145 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS  145 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh
Confidence            4899999999999999999999999997432222    233334556888888765 4455444444 56665543322 


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      ++..        +.|...|.-..|.++.+.+.-+
T Consensus       146 lRlV--------ks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  146 LRLV--------KSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhh--------hhcccCccEEEEccccceEeee
Confidence            2222        4666778888888887654433

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=94.03  E-value=2.3  Score=33.15  Aligned_cols=97  Identities=12%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             CCeEEEEecCCCcEEEEeec--C-------------------------CcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          180 DSCAYCWDVESSRIKMVFKG--H-------------------------SDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~--~-------------------------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      |+.+.-.|+.+++.+.+...  |                         ---+.+|...++|.+|++.-.-..|.+.|.++
T Consensus        95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t  174 (299)
T PF14269_consen   95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST  174 (299)
T ss_pred             cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence            55666777777877765421  0                         01266777778899999999999999999999


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |+.+..+.+.....+..   .-...++-.+-+++-.+..++.|.+||
T Consensus       175 G~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  175 GKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             CcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEEEc
Confidence            99999985542111111   112244445555555556677777775

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.93  E-value=0.97  Score=36.63  Aligned_cols=123  Identities=11%  Similarity=0.024  Sum_probs=50.5

Q ss_pred             Cceeeeccccccccceeeeeec--ccceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeC-CCCC--cccccccCCcccce
Q 023643            3 GDSTNWDEDAYRKSILKEREIL--TRTVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSI-PSCI--SKLPLGLSNSKVQQ   76 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~-~~~~--~~~~~~~~~~~~~~   76 (279)
                      ..+.+||+...+.  ++++..-  ......+.|...+  +..+-++| .-..+|..|-- ..+.  .+..+...+.....
T Consensus       222 ~~l~vWD~~~r~~--~Q~idLg~~g~~pLEvRflH~P--~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  222 HSLHVWDWSTRKL--LQTIDLGEEGQMPLEVRFLHDP--DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             -EEEEEETTTTEE--EEEEES-TTEEEEEEEEE-SST--T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             CeEEEEECCCCcE--eeEEecCCCCCceEEEEecCCC--CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence            3689999988754  4444432  2346677776532  33443333 23344444433 2211  00011111100000


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCccee
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPI  131 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~  131 (279)
                      -.....++.+..-..-|+.|..+.+.+  +| +++=..|.|+.||+.+....+...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~g  351 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVG  351 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred             ccccccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEe
Confidence            000111122222345688999999998  55 455569999999998754444433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.84  E-value=0.96  Score=31.95  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=22.6

Q ss_pred             eeeeEEEEcCCC------CEEEEEcCcceEEeC
Q 023643          252 SCVSCITLDASE------SWLVRVRATNYVILF  278 (279)
Q Consensus       252 ~~v~~~~~~~~~------~~l~~~~~d~~i~~w  278 (279)
                      ..+.+++|||.|      .+|++-+.++.|.+|
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~  118 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY  118 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
Confidence            378899999954      578888999999987

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.78  E-value=0.44  Score=24.15  Aligned_cols=40  Identities=13%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             CCCCeEEEec-CCCeEEEEecCCCcEEEEeecCCcceEEEEE
Q 023643          169 PQGGAIFSAA-GDSCAYCWDVESSRIKMVFKGHSDYLHCIVA  209 (279)
Q Consensus       169 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~  209 (279)
                      |+++.|+++. .++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            4667666654 5789999999988888877652 33344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=93.51  E-value=5.3  Score=35.72  Aligned_cols=67  Identities=12%  Similarity=-0.025  Sum_probs=49.1

Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe----ec---------------CCcceEEEEEcCCCcEEEEec
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF----KG---------------HSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~---------------~~~~i~~i~~~~~~~~l~~~~  220 (279)
                      +.|.++....-+..++....||+|.++|..+.+.+...    ..               +...+..++|||.+--++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45777877777778999999999999998877555443    10               111344578999888888888


Q ss_pred             CCCeEE
Q 023643          221 EDGTAR  226 (279)
Q Consensus       221 ~d~~i~  226 (279)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.48  E-value=4.3  Score=34.56  Aligned_cols=74  Identities=16%  Similarity=0.260  Sum_probs=51.3

Q ss_pred             eEEEcCCCCeEEEecCC----------------CeEEEEecCCCcEEEEeecCCcce---------EEEEEcCCCc---E
Q 023643          164 AIAVDPQGGAIFSAAGD----------------SCAYCWDVESSRIKMVFKGHSDYL---------HCIVARNSTN---Q  215 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~~~~---~  215 (279)
                      .++++|...+++.+..+                .+|.-.|+++|+.+-.++.....+         .-+.+..+|+   .
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~  317 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL  317 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence            45777777777766522                267888999999998887422211         1122223555   7


Q ss_pred             EEEecCCCeEEEEeCCCCceEE
Q 023643          216 IVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       216 l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      ++.+..+|.+.+.|.++|+.+.
T Consensus       318 v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       318 LAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             EEEeCCCceEEEEECCCCceec
Confidence            8899999999999999999863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.35  E-value=3.3  Score=32.87  Aligned_cols=65  Identities=11%  Similarity=0.019  Sum_probs=37.6

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      +..+.+.|++..++ ++.+|.+.. ....++.-....   .-....+.+.|..+++.++ .+..|.|--|+
T Consensus       262 l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        262 YLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             eeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            57788888776554 555675543 334343322222   2224577788776666555 45678777665

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.12  E-value=6.4  Score=35.49  Aligned_cols=97  Identities=8%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC--CceEEEecCCccccc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS--GKCIKVIDPVKDKQL  247 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~  247 (279)
                      +|+++|  +-...|++|+..+.+.++.-..+..++..+...-.|..++.|..-+++.+...+.  |.....-+       
T Consensus       839 ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-------  909 (1096)
T KOG1897|consen  839 NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-------  909 (1096)
T ss_pred             CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-------
Confidence            455554  3357899999998888887777888999999988999999999888877765543  33444332       


Q ss_pred             cCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643          248 KGVISCVSCITLDASESWLVRVRATNYVI  276 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  276 (279)
                      ..+..+++++.+-.+.. ++.+..+|.+.
T Consensus       910 D~~p~Wmtaveil~~d~-ylgae~~gNlf  937 (1096)
T KOG1897|consen  910 DYNPNWMTAVEILDDDT-YLGAENSGNLF  937 (1096)
T ss_pred             hhCccceeeEEEecCce-EEeecccccEE
Confidence            45667888888765444 44444555543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.09  E-value=3  Score=31.65  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=64.6

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .....|++.|++-+++.. |.---.|.. ...+..+... ....+.|+..|+|..-++.-.++.|-..|..++.. ..+.
T Consensus       150 let~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p  226 (353)
T COG4257         150 LETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVP  226 (353)
T ss_pred             ccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceec
Confidence            567889999998888763 111111211 1223333322 23457788889999888877788888888877733 3333


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+     ......-..+--+|.|+.-+|....+.+..||
T Consensus       227 ~P-----~~~~~gsRriwsdpig~~wittwg~g~l~rfd  260 (353)
T COG4257         227 QP-----NALKAGSRRIWSDPIGRAWITTWGTGSLHRFD  260 (353)
T ss_pred             CC-----CcccccccccccCccCcEEEeccCCceeeEeC
Confidence            22     22222334455567777777766666665553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.06  E-value=0.18  Score=40.99  Aligned_cols=91  Identities=14%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .|.+.+||++......+..-..|....  +.|++    ....++.+...|.+.|++..+                   .+
T Consensus        96 ~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK----g~~el~ig~~~gn~viynhgt-------------------sR  150 (615)
T KOG2247|consen   96 TGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK----GTPELVIGNNAGNIVIYNHGT-------------------SR  150 (615)
T ss_pred             CCCeeechhhhhhHHHHhccCcchHHH--Hhhcc----CCccccccccccceEEEeccc-------------------hh
Confidence            367889997764433332222233333  78999    788899999999999999987                   34


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEee
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWR  120 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~  120 (279)
                      .+..+-.|..++.++++.+.+   +.+.++.|..+.+-.
T Consensus       151 ~iiv~Gkh~RRgtq~av~lEd---~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  151 RIIVMGKHQRRGTQIAVTLED---YVILCDCDNTLSVTT  186 (615)
T ss_pred             hhhhhcccccceeEEEecccc---eeeecCcHHHHHHhh
Confidence            444444499999999999987   688888777665544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.94  E-value=4.4  Score=33.10  Aligned_cols=135  Identities=16%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             EEEEee-CCCcEEEeecCCCccCcceeeeccC-cccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-----
Q 023643          106 LLLSCG-DDGRICGWRWKEFTESKVPINLQGN-HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-----  178 (279)
Q Consensus       106 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----  178 (279)
                      +|+..+ ..+.|.|.|+.+......+...... ....-..+.               .-..+..-|+|+.++++-     
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s---------------~PHT~Hclp~G~imIS~lGd~~G  153 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLS---------------RPHTVHCLPDGRIMISALGDADG  153 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EE---------------EEEEEEE-SS--EEEEEEEETTS
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCC---------------CCceeeecCCccEEEEeccCCCC
Confidence            666655 7889999998754433332222111 110000000               013445567888777742     


Q ss_pred             -CCCeEEEEecCCCcEEEEeecC---CcceEEEEEcCCCcEEEEec--------------------CCCeEEEEeCCCCc
Q 023643          179 -GDSCAYCWDVESSRIKMVFKGH---SDYLHCIVARNSTNQIVTGS--------------------EDGTARIWDCKSGK  234 (279)
Q Consensus       179 -~d~~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~~~~~~l~~~~--------------------~d~~i~vwd~~~~~  234 (279)
                       .-|-+.++|-++.+.+...+..   ...-+.+.|.|..+.++|..                    ...++.+||+.+.+
T Consensus       154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~  233 (461)
T PF05694_consen  154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK  233 (461)
T ss_dssp             -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred             CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence             2356888998888887776542   23456788888888888875                    25579999999999


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      .++++....      .......+.|..
T Consensus       234 ~~Q~idLg~------~g~~pLEvRflH  254 (461)
T PF05694_consen  234 LLQTIDLGE------EGQMPLEVRFLH  254 (461)
T ss_dssp             EEEEEES-T------TEEEEEEEEE-S
T ss_pred             EeeEEecCC------CCCceEEEEecC
Confidence            999997532      122344566654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.76  E-value=5  Score=33.29  Aligned_cols=52  Identities=8%  Similarity=0.038  Sum_probs=36.2

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE--EEEee-----cCCcceEEEEEcCCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI--KMVFK-----GHSDYLHCIVARNST  213 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~-----~~~~~i~~i~~~~~~  213 (279)
                      .+.|+|.|++++|++--..|.|++++..++..  +..+.     ...+.+..|+++|+-
T Consensus        32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            47899999998777665569999998665432  21111     135778999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.56  E-value=0.97  Score=38.61  Aligned_cols=36  Identities=17%  Similarity=0.356  Sum_probs=28.3

Q ss_pred             ceeEEEcC----CCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643          162 NNAIAVDP----QGGAIFSAAGDSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       162 i~~~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~  197 (279)
                      ...+++++    +..++++.+.|+.+|+||+.+++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            45566666    6678999999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.48  E-value=5.2  Score=32.79  Aligned_cols=160  Identities=10%  Similarity=0.075  Sum_probs=84.7

Q ss_pred             ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce-e
Q 023643           86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN-A  164 (279)
Q Consensus        86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~  164 (279)
                      +..--..|..+-..|+++  .+..-+. ..+.++++.+..-...  .+.......        ...         .|+ .
T Consensus       216 L~~~~~~v~qllL~Pdg~--~LYv~~g-~~~~v~~L~~r~l~~r--kl~~dspg~--------~~~---------~Vte~  273 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGK--TLYVRTG-SELVVALLDKRSLQIR--KLVDDSPGD--------SRH---------QVTEQ  273 (733)
T ss_pred             cCCCccchHhhEECCCCC--EEEEecC-CeEEEEeecccccchh--hhhhcCCCc--------hHH---------HHHHH
Confidence            333445677788889998  5554443 6788888754221111  111000000        000         011 2


Q ss_pred             EEEcCCCCeEEEecCCCeEEEE-ecCCC-----cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          165 IAVDPQGGAIFSAAGDSCAYCW-DVESS-----RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       165 ~~~~~~~~~l~~~~~d~~i~i~-d~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      +..-..+.-+.+++.||.|.-| |.+.+     ..++.++-....+..+.-..+.+-+++-+..|++.++.....+.+-.
T Consensus       274 l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~  353 (733)
T COG4590         274 LYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF  353 (733)
T ss_pred             HHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh
Confidence            2222345567788889988766 55432     22333333334444443333455677888888888887554444332


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      -         .--....-+++||++.+|++-.. |.+++
T Consensus       354 ~---------~~~~~~~~~~~Sp~~~~Ll~e~~-gki~~  382 (733)
T COG4590         354 E---------RAYQAPQLVAMSPNQAYLLSEDQ-GKIRL  382 (733)
T ss_pred             h---------hhhcCcceeeeCcccchheeecC-CceEE
Confidence            2         11124567889999998887533 44554

>PRK10115 protease 2; Provisional

Probab=92.47  E-value=2.7  Score=37.10  Aligned_cols=70  Identities=9%  Similarity=-0.014  Sum_probs=46.1

Q ss_pred             ceeEEEcCCCCeEEEecC-----CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC------CeEEEEeC
Q 023643          162 NNAIAVDPQGGAIFSAAG-----DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED------GTARIWDC  230 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~  230 (279)
                      +..+.++|++++|+.+..     ...|++.|+.+++.+...-....  ..++|.++++.|+....+      ..|..+++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            567889999998776532     24589999988864322211111  458999988766554332      35788888


Q ss_pred             CCC
Q 023643          231 KSG  233 (279)
Q Consensus       231 ~~~  233 (279)
                      .++
T Consensus       207 gt~  209 (686)
T PRK10115        207 GTP  209 (686)
T ss_pred             CCC
Confidence            877

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.38  E-value=5.7  Score=33.08  Aligned_cols=53  Identities=21%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          212 STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       212 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      ...+++.+|..|-|++||. -|....+.-       .+....|..+..+.+|.++++.+..
T Consensus       572 esGyIa~as~kGDirLyDR-ig~rAKtal-------P~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDR-IGKRAKTAL-------PGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             cCceEEEecCCCceeeehh-hcchhhhcC-------cccccceeeeEeecCCcEEEEeecc
Confidence            4679999999999999994 444443332       4666788889999999988776653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.32  E-value=3.4  Score=33.75  Aligned_cols=37  Identities=14%  Similarity=0.031  Sum_probs=30.6

Q ss_pred             eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC
Q 023643           21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC   61 (279)
Q Consensus        21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   61 (279)
                      +......+.+++.+|    ++.+.|+..+-|.|.++|+.++
T Consensus       303 l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~  339 (415)
T PF14655_consen  303 LPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARG  339 (415)
T ss_pred             eccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCC
Confidence            333455688999999    8999999888899999999983

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.25  E-value=2.8  Score=29.62  Aligned_cols=32  Identities=13%  Similarity=0.116  Sum_probs=25.9

Q ss_pred             cCeEEEEecCCCC----ceEEEEeeCCCcEEEeecC
Q 023643           91 GPAYDVKFYGGNE----DALLLSCGDDGRICGWRWK  122 (279)
Q Consensus        91 ~~v~~~~~~~~~~----~~~l~s~~~dg~i~iw~~~  122 (279)
                      ..+..++|+|.|-    +-+|++...++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3688999999543    2479999999999999854

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.86  E-value=5.2  Score=35.73  Aligned_cols=70  Identities=13%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCCcc--------eEEEEEcC----------------CCcEEEEecCCCeEE
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY--------LHCIVARN----------------STNQIVTGSEDGTAR  226 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~----------------~~~~l~~~~~d~~i~  226 (279)
                      +..+++++.++.|.-.|..+++.+-++......        .+.+++..                ++..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            557888888999999999999998887543211        12233321                345788889999999


Q ss_pred             EEeCCCCceEEEec
Q 023643          227 IWDCKSGKCIKVID  240 (279)
Q Consensus       227 vwd~~~~~~~~~~~  240 (279)
                      -.|.++|+....+.
T Consensus       274 ALDA~TGk~~W~fg  287 (764)
T TIGR03074       274 ALDADTGKLCEDFG  287 (764)
T ss_pred             EEECCCCCEEEEec
Confidence            99999999987763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.75  E-value=0.11  Score=45.27  Aligned_cols=89  Identities=11%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             CeEEEEecC--CCcEEEEee-----cCCcceEEEEEcC---CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643          181 SCAYCWDVE--SSRIKMVFK-----GHSDYLHCIVARN---STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV  250 (279)
Q Consensus       181 ~~i~i~d~~--~~~~~~~~~-----~~~~~i~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  250 (279)
                      |.+.+||+.  .|+....+.     .....+.-+.|.|   ..-++..+-.++.+++........ ..+        .+|
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rsH  223 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RSH  223 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHH--------Hhc
Confidence            667888875  344333322     2234455566665   566777788888888877654322 222        334


Q ss_pred             ceeeeEEE-----------EcCCCCEEEEEcCcceEEeC
Q 023643          251 ISCVSCIT-----------LDASESWLVRVRATNYVILF  278 (279)
Q Consensus       251 ~~~v~~~~-----------~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ..++..++           .+|||..++++..||.+++|
T Consensus       224 s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  224 SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            44444333           58999999999999999887

>PHA02790 Kelch-like protein; Provisional

Probab=91.69  E-value=7.3  Score=32.81  Aligned_cols=60  Identities=10%  Similarity=-0.009  Sum_probs=31.2

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEE--EEeecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIK--MVFKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGK  234 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  234 (279)
                      ++...+.|   |.+.+||.++.+-.  ..+.........+.  -+++..+.|+.+     ..+.+||..+++
T Consensus       407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            34444545   34678888765432  22221122222222  357788888754     346677766554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.53  E-value=10  Score=34.16  Aligned_cols=190  Identities=12%  Similarity=0.073  Sum_probs=103.0

Q ss_pred             ecccceEEEEEC---CCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC---CccCeEEE
Q 023643           23 ILTRTVFRTVWG---PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG---HDGPAYDV   96 (279)
Q Consensus        23 ~~~~~v~~~~~~---~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~   96 (279)
                      ....+|..++|.   ........+|++- ....+.|+...-.......   ... ...+...++..+..   -..+...+
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~---~~~-~s~i~~~~l~~i~~~~tgg~~~aDv  151 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSI---RSR-PSRIDPNPLLTISSSDTGGFPHADV  151 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccc---cCC-ccccccceeEEechhhcCCCccceE
Confidence            346789999998   3211233465554 4456778774332210000   000 00011233334432   23467789


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCc-cCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFT-ESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      +|+|... ..||.....|...||++.... .............+.+  +......         ..-..+.|.++...|+
T Consensus       152 ~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi--~~d~~e~---------s~w~rI~W~~~~~~lL  219 (765)
T PF10214_consen  152 AFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI--IFDPEEL---------SNWKRILWVSDSNRLL  219 (765)
T ss_pred             EeccCcc-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc--cCCCccc---------CcceeeEecCCCCEEE
Confidence            9999776 489999999999999992111 1111222222222222  0111111         1235788988888887


Q ss_pred             EecCCCeEEEEecCCCcEEE-Ee-ecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCC
Q 023643          176 SAAGDSCAYCWDVESSRIKM-VF-KGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~-~~-~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~  232 (279)
                      +.+ ...+.++|+++..... .. ......|..+.-+|.  +..++-  ....|...++..
T Consensus       220 v~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~  277 (765)
T PF10214_consen  220 VCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS  277 (765)
T ss_pred             EEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence            766 4678999998775533 21 224567888888886  233222  235677777665

These proteins are found in fungi.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.49  E-value=5.9  Score=31.37  Aligned_cols=168  Identities=17%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             ccCeEEEEecCCCCceEEEEeeCCCc------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           90 DGPAYDVKFYGGNEDALLLSCGDDGR------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      -+.+..|.+.|++.  .+++.+.+|.      +...++............     .....+.... ..++..  ......
T Consensus        19 ~GGlSgl~~~~~~~--~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~~~~-G~~~~~--~~~D~E   88 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG--RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-----LDMIPLRDPD-GQPFPK--NGLDPE   88 (326)
T ss_pred             cCcEeeEEEeCCCC--EEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-----ccceeccCCC-CCcCCc--CCCChh
Confidence            35678899997665  7777788887      655555431110000000     0000111111 111100  001246


Q ss_pred             eEEEcCCCCeEEEecCC------CeEEEEecCCCcEEEEee---------------cCCcceEEEEEcCCCcEEEEecC-
Q 023643          164 AIAVDPQGGAIFSAAGD------SCAYCWDVESSRIKMVFK---------------GHSDYLHCIVARNSTNQIVTGSE-  221 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---------------~~~~~i~~i~~~~~~~~l~~~~~-  221 (279)
                      +|++.+++.++++.-.+      ..|+.++.. ++.+..+.               ......-+|+++|+|+.|+++.+ 
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~  167 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES  167 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence            78887777777766666      788888876 66555441               12345789999999996666543 


Q ss_pred             ----CCe---------EEE--EeCCC-CceEEEecCCccc-cccCcceeeeEEEEcCCCCEEEE
Q 023643          222 ----DGT---------ARI--WDCKS-GKCIKVIDPVKDK-QLKGVISCVSCITLDASESWLVR  268 (279)
Q Consensus       222 ----d~~---------i~v--wd~~~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  268 (279)
                          |+.         +++  ||..+ ++....+...... ........++.+.+-+++++|+-
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                221         344  45444 3222222111000 00014567888999999887664

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.22  E-value=11  Score=33.95  Aligned_cols=160  Identities=12%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             CCccCeEEEEec---CC-CCceEEEEeeCCCcEEEeecCCCccCccee-eeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           88 GHDGPAYDVKFY---GG-NEDALLLSCGDDGRICGWRWKEFTESKVPI-NLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        88 ~h~~~v~~~~~~---~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      .-..+|..|+|.   .. +....++..-....+.|+...-.+...... ....-...++..+......+        ...
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--------~~~  148 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--------FPH  148 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--------Ccc
Confidence            456789999998   21 110134555556778887743211100000 00000112222222111111        134


Q ss_pred             eeEEEcCC-CCeEEEecCCCeEEEEecCCC-----cEEEEeecCCc----------ceEEEEEcCCCcEEEEecCCCeEE
Q 023643          163 NAIAVDPQ-GGAIFSAAGDSCAYCWDVESS-----RIKMVFKGHSD----------YLHCIVARNSTNQIVTGSEDGTAR  226 (279)
Q Consensus       163 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~----------~i~~i~~~~~~~~l~~~~~d~~i~  226 (279)
                      ..++|+|. ...||+....|...|||+...     ........+.+          .-..+.|.++.+.|+.++ ...+.
T Consensus       149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~  227 (765)
T PF10214_consen  149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLM  227 (765)
T ss_pred             ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceE
Confidence            68999984 458999999999999999211     11111111122          223677888777777765 44578


Q ss_pred             EEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ++|+++......+-.      ......|..+.-+|.
T Consensus       228 ~~d~~~~~~~~~l~~------~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  228 LIDFESNWQTEYLVT------AKTWSWILDVKRSPD  257 (765)
T ss_pred             EEECCCCCccchhcc------CCChhheeeEEecCC
Confidence            889887655332211      233456777776665

These proteins are found in fungi.

>smart00564 PQQ beta-propeller repeat

Probab=91.10  E-value=0.83  Score=21.64  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEe
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~  197 (279)
                      .+++++.++.++.+|.++++.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6788888999999999999887653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.88  E-value=6.1  Score=30.42  Aligned_cols=142  Identities=13%  Similarity=0.036  Sum_probs=85.3

Q ss_pred             CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643           92 PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG  171 (279)
Q Consensus        92 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  171 (279)
                      -+..+.++.+    +...+..+.-++|.|+.+..+......+.-.+.                       -.++..  .|
T Consensus        88 l~~Dv~vse~----yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy-----------------------aygv~v--sG  138 (370)
T COG5276          88 LFADVRVSEE----YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY-----------------------AYGVYV--SG  138 (370)
T ss_pred             hhheeEeccc----EEEEEcCCCceEEEeccCCCCcceeccccCCce-----------------------EEEEEe--cC
Confidence            3455666543    777778888899999976544333333222111                       234444  57


Q ss_pred             CeEEEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          172 GAIFSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      ++.+++..|.-..++|+.+.   .+...+.........++.|  |++-..+..|+-+.+-|+.......-+. +     .
T Consensus       139 n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-~-----~  210 (370)
T COG5276         139 NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-S-----Y  210 (370)
T ss_pred             CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-E-----E
Confidence            88888886666778888654   3344444444444667766  7777777789989999987643322221 0     1


Q ss_pred             CcceeeeEEEEcCCCCEEEEEc
Q 023643          249 GVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      .....+.++..+++.-+++...
T Consensus       211 n~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         211 NTGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             ecCCceEEEEecCCeeEEEEcc
Confidence            1122567777777766655543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.70  E-value=5  Score=29.16  Aligned_cols=101  Identities=12%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             cCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CC---cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          168 DPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HS---DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       168 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      ..++..|+.+....++++-|..+.....+..-  ..   ..+..+.| -+|...+-.-.+..|...|..+|+.+..++..
T Consensus       137 t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS  215 (262)
T COG3823         137 TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLS  215 (262)
T ss_pred             ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence            34556677777777888888776544333221  11   12233344 25666665556666777788888877776533


Q ss_pred             cc----ccccCcceeeeEEEEcCCC-CEEEEE
Q 023643          243 KD----KQLKGVISCVSCITLDASE-SWLVRV  269 (279)
Q Consensus       243 ~~----~~~~~~~~~v~~~~~~~~~-~~l~~~  269 (279)
                      ..    ..-..+..-.+.+++.|++ ++++||
T Consensus       216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCchhcCccccccccccceeecCcCCeEEEec
Confidence            21    0113345577899999987 666666

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.49  E-value=1.4  Score=22.26  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=22.7

Q ss_pred             CCCcEEEE-ecCCCeEEEEeCCCCceEEEec
Q 023643          211 NSTNQIVT-GSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       211 ~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      |++++|++ .-.+++|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            45665554 4468899999999988888774

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.15  E-value=9.4  Score=31.41  Aligned_cols=104  Identities=12%  Similarity=0.036  Sum_probs=62.1

Q ss_pred             CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643           88 GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV  167 (279)
Q Consensus        88 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  167 (279)
                      ..+++|.++.|+++.+  .|+.--.|.+|.+++....+.. ....... ..                   ....|....|
T Consensus        64 ~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~-l~~~~~c-k~-------------------k~~~IlGF~W  120 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQ-LEYTQEC-KT-------------------KNANILGFCW  120 (657)
T ss_pred             cCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchh-hHHHHHh-cc-------------------CcceeEEEEE
Confidence            3567999999999998  9999999999999986321111 1111000 00                   0012567778


Q ss_pred             cCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEE
Q 023643          168 DPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQI  216 (279)
Q Consensus       168 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l  216 (279)
                      +.. .-++..+..| +-+|-... .+.++..+.|...|.=-.|.++.+.+
T Consensus       121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence            765 4455554434 55554432 34555556676667666777765553

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.15  E-value=6.8  Score=32.76  Aligned_cols=92  Identities=11%  Similarity=0.019  Sum_probs=47.4

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc-eeee-ccccccccCCccCeEEEEecCCC-
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ-QLLG-IEPDGFLHGHDGPAYDVKFYGGN-  102 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~h~~~v~~~~~~~~~-  102 (279)
                      -.|..+..++    .|..++-.+.+|.+..+=.........++-...... .+.. +..+.+-. ..-.+...+|+|+. 
T Consensus       104 feV~~vl~s~----~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~  178 (741)
T KOG4460|consen  104 FEVYQVLLSP----TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSI  178 (741)
T ss_pred             EEEEEEEecC----CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCcc
Confidence            3567777788    899999999999765544332111111100000000 0000 11111111 12236677888875 


Q ss_pred             -CceEEEEeeCCCcEEEeecCC
Q 023643          103 -EDALLLSCGDDGRICGWRWKE  123 (279)
Q Consensus       103 -~~~~l~s~~~dg~i~iw~~~~  123 (279)
                       . ..|..-+.|..||+|++..
T Consensus       179 ~D-~hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  179 LD-PHLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             CC-ceEEEEecCcEEEEEecCC
Confidence             2 2667777788888888754

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.11  E-value=7  Score=36.13  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=27.3

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS   60 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~   60 (279)
                      ......++|+|    ...++|.+..+|.|+++-...
T Consensus        35 ~~~~~~~afD~----~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDP----TQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeecc----ccceEEEEEecccEEEecccc
Confidence            34667789999    889999999999999998764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.86  E-value=14  Score=33.10  Aligned_cols=61  Identities=16%  Similarity=0.275  Sum_probs=42.7

Q ss_pred             CCeEEEEecCCCcEEEEeecCCcce---------EEEEEcC-CCc---EEEEecCCCeEEEEeCCCCceEEEec
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYL---------HCIVARN-STN---QIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~-~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+.|.-.|.++++.+-.++.....+         .=+.+.. +|+   .++.++.+|.+.++|.++|+.+..++
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            3667888999999988886521111         1112222 453   78999999999999999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.59  E-value=15  Score=33.00  Aligned_cols=75  Identities=12%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe----cCCc------ccccc-CcceeeeEEEEcCCCCEEEEEc
Q 023643          202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI----DPVK------DKQLK-GVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       202 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~----~~~~------~~~~~-~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ..|.+++...-+..++..-.||+|.++|..+.+.+...    ....      +..+. .....+..++|||.+..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45677777666788999999999999999887666554    2111      00010 0111445689999999898888


Q ss_pred             CcceEE
Q 023643          271 ATNYVI  276 (279)
Q Consensus       271 ~d~~i~  276 (279)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888743

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.50  E-value=1.6  Score=21.68  Aligned_cols=27  Identities=15%  Similarity=0.414  Sum_probs=23.3

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeec
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      .++.++.+|.|+-.|.++|+.+-.++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            466779999999999999999988864

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=89.44  E-value=1.2  Score=20.28  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=21.1

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEe
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYS   57 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~   57 (279)
                      +.|.+++..+      .+++++.+.+.+|+|.
T Consensus         2 E~i~aia~g~------~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGD------SWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccC------CEEEEEeCCCeEEecC
Confidence            4577888776      7899999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=6.6  Score=28.58  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc
Q 023643           47 ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE  126 (279)
Q Consensus        47 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  126 (279)
                      .-.+|.-..+|.++.                   +.+..+. -++.-..++  .++.  .|+.++...+++.-|.++...
T Consensus       107 Tw~egvaf~~d~~t~-------------------~~lg~~~-y~GeGWgLt--~d~~--~LimsdGsatL~frdP~tfa~  162 (262)
T COG3823         107 TWKEGVAFKYDADTL-------------------EELGRFS-YEGEGWGLT--SDDK--NLIMSDGSATLQFRDPKTFAE  162 (262)
T ss_pred             EeccceeEEEChHHh-------------------hhhcccc-cCCcceeee--cCCc--ceEeeCCceEEEecCHHHhhh
Confidence            356778888888873                   3333332 223334444  3444  466555566777777665433


Q ss_pred             Ccceeee-ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe--------
Q 023643          127 SKVPINL-QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF--------  197 (279)
Q Consensus       127 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------  197 (279)
                      ...+... .+.....                     ++-+.|- +|...+-.=.+..|...|..+|+.+.-+        
T Consensus       163 ~~~v~VT~~g~pv~~---------------------LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~  220 (262)
T COG3823         163 LDTVQVTDDGVPVSK---------------------LNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKE  220 (262)
T ss_pred             cceEEEEECCeeccc---------------------ccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchh
Confidence            3332222 2211111                     2233332 3433333333444555555566554433        


Q ss_pred             ----ecCCcceEEEEEcCCC-cEEEEe
Q 023643          198 ----KGHSDYLHCIVARNST-NQIVTG  219 (279)
Q Consensus       198 ----~~~~~~i~~i~~~~~~-~~l~~~  219 (279)
                          ..|.+-...+++.|++ +++++|
T Consensus       221 ~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         221 LNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCccccccccccceeecCcCCeEEEec
Confidence                2345567889999976 556665

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.31  E-value=9.6  Score=30.29  Aligned_cols=71  Identities=10%  Similarity=0.019  Sum_probs=43.2

Q ss_pred             cceEEEEEcC-------CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          202 DYLHCIVARN-------STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       202 ~~i~~i~~~~-------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      ..+..+.|..       .+.++++.-..+.|....+..+..+.....    .+......+..+++.|||.++++...+|.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~  328 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE----FLGGFGGRPRDVAQGPDGALYVSDDSDGK  328 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE----ECTTSSS-EEEEEEETTSEEEEEE-TTTT
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE----ccccCCCCceEEEEcCCCeEEEEECCCCe
Confidence            4556666653       355677666677788777765533222110    01334447899999999999998888887


Q ss_pred             EE
Q 023643          275 VI  276 (279)
Q Consensus       275 i~  276 (279)
                      |.
T Consensus       329 iy  330 (331)
T PF07995_consen  329 IY  330 (331)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.97  E-value=2.9  Score=30.43  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=40.2

Q ss_pred             CeEEEecCCCeEEEEecCC--CcEEEEeecCCcceEEEEEcCCCcEEEEecC---C---CeEEEE
Q 023643          172 GAIFSAAGDSCAYCWDVES--SRIKMVFKGHSDYLHCIVARNSTNQIVTGSE---D---GTARIW  228 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d---~~i~vw  228 (279)
                      ..|+.+.....|.+|++.+  .+++..|.. -+.|..+.++..|+||++-=.   .   ..+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            3454546678899999883  456667764 378999999999999998532   2   256775

>smart00564 PQQ beta-propeller repeat

Probab=88.68  E-value=1.6  Score=20.60  Aligned_cols=26  Identities=31%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             cEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          214 NQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       214 ~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..++.++.+|.+..+|.++|+.+..+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            36777889999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.12  E-value=10  Score=29.24  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec------CCCeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS------EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      ..|++||..+.+-..--.+-.+.|++|.|..+.+.++.|.      ....+..||+.+.... .+.....   ..-..+|
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s---~~ipgpv   91 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSS---NSIPGPV   91 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCccc---ccCCCcE
Confidence            4599999877655554444567899999986667777664      4556889998766432 2321000   1123567


Q ss_pred             eEEEEc
Q 023643          255 SCITLD  260 (279)
Q Consensus       255 ~~~~~~  260 (279)
                      +.+.+.
T Consensus        92 ~a~~~~   97 (281)
T PF12768_consen   92 TALTFI   97 (281)
T ss_pred             EEEEee
Confidence            777664

>PRK10115 protease 2; Provisional

Probab=88.09  E-value=18  Score=32.08  Aligned_cols=30  Identities=13%  Similarity=0.064  Sum_probs=21.3

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCC-----CcEEEEeCCC
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSD-----GSITSYSIPS   60 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~   60 (279)
                      .+..+.++|    ++++|+.+...     -.|++.|+.+
T Consensus       128 ~l~~~~~Sp----dg~~la~~~d~~G~E~~~l~v~d~~t  162 (686)
T PRK10115        128 TLGGMAITP----DNTIMALAEDFLSRRQYGIRFRNLET  162 (686)
T ss_pred             EEeEEEECC----CCCEEEEEecCCCcEEEEEEEEECCC
Confidence            366678899    88888775332     2578888876

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.71  E-value=12  Score=35.12  Aligned_cols=169  Identities=11%  Similarity=0.085  Sum_probs=81.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEEC-CCCC---CCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWG-PSKD---GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      |..+.+|+.++...  ...+.+-...|..+..- |.+.   +.=++++....--.|.++-+.-.+.......        
T Consensus        98 Dn~L~lWny~~~~e--~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~--------  167 (1311)
T KOG1900|consen   98 DNNLFLWNYESDNE--LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI--------  167 (1311)
T ss_pred             CCeEEEEEcCCCCc--cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc--------
Confidence            77899999877432  44444555667666542 2110   0223333333334566766543221111000        


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee--eccCcccceEEeecCCCCCcccc
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN--LQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                        ......+....-.|.++....+|.   +.-+|.||  .+|.+-..........  -+-...+.+.....+.   -...
T Consensus       168 --f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~  237 (1311)
T KOG1900|consen  168 --FNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSV  237 (1311)
T ss_pred             --cccceeeecCCceEEEEEeccCCc---EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcC
Confidence              000011222244688888777775   55555666  4555422111100000  0000000000000000   0000


Q ss_pred             -CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC
Q 023643          156 -LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES  190 (279)
Q Consensus       156 -~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  190 (279)
                       .....+|..+.+......+++-+..++|.+||+..
T Consensus       238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             12234689999998888999999999999999975

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.66  E-value=6.4  Score=26.32  Aligned_cols=100  Identities=8%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             EEEcCCCCeEEEecCCCeEEEEecCCC--------cEEEEeecCCcceEEEEEcC-----CCcEEEEecCCCeEEEEeCC
Q 023643          165 IAVDPQGGAIFSAAGDSCAYCWDVESS--------RIKMVFKGHSDYLHCIVARN-----STNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       165 ~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~  231 (279)
                      -.|......|+.++.-++|.|++....        ..++.+. -...|++++-.+     ....|+.|+ ...|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            356666678888888999999987633        2334343 345677775433     245566665 5568899998


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcC----CCCEEEEEcCcceEE
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDA----SESWLVRVRATNYVI  276 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~  276 (279)
                      ...-+..-         .-...|.++.+-.    +.+++++|+ +..|.
T Consensus        82 ~N~d~Fyk---------e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~  120 (136)
T PF14781_consen   82 NNSDLFYK---------EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQ  120 (136)
T ss_pred             cCchhhhh---------hCccceeEEEEEecCCCCCcEEEECc-eEEEE
Confidence            76554332         2234566666532    234444543 34443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.57  E-value=20  Score=31.92  Aligned_cols=70  Identities=13%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             eeEEEcCCCCeEEEecCCC-----eEEEEecCCCcEEEEe---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          163 NAIAVDPQGGAIFSAAGDS-----CAYCWDVESSRIKMVF---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      ..++|-|+|..+++-..||     .|.++.. +|-.-..+   .+....+..++|+-....++ .+..+.|++|-..+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceE
Confidence            4689999999999876554     3455542 22111111   11233445556654433333 3456779999766543

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=87.18  E-value=15  Score=30.00  Aligned_cols=82  Identities=12%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ....|.++.|.-    |--+++|--...-+.+.|+...+....                +..++   -+-.+--.+|-+.
T Consensus       426 ~gERIYAvRf~g----dv~yiVTfrqtDPlfviDlsNPenPkv----------------lGeLK---IPGfS~YLHpige  482 (603)
T COG4880         426 PGERIYAVRFVG----DVLYIVTFRQTDPLFVIDLSNPENPKV----------------LGELK---IPGFSEYLHPIGE  482 (603)
T ss_pred             CCceEEEEEEeC----ceEEEEEEeccCceEEEEcCCCCCCce----------------eEEEe---cCCchhhccccCC
Confidence            457899999988    777888876666788888876432211                11111   1112223456555


Q ss_pred             ceEEEEeeCCCcEE--EeecCCCccCc
Q 023643          104 DALLLSCGDDGRIC--GWRWKEFTESK  128 (279)
Q Consensus       104 ~~~l~s~~~dg~i~--iw~~~~~~~~~  128 (279)
                      +.+|-.|..+|.++  ++|+.+....+
T Consensus       483 n~~lGvG~~~g~vKiSLFdiSdl~~Pk  509 (603)
T COG4880         483 NRLLGVGAYQGGVKISLFDISDLAAPK  509 (603)
T ss_pred             CcEEEeecccCCceEEEEeccCCCCch
Confidence            44677777777654  78887654433

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.97  E-value=5.3  Score=24.61  Aligned_cols=41  Identities=5%  Similarity=0.131  Sum_probs=27.6

Q ss_pred             cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          178 AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                      ..+|.+..||..+++....+.+ -.....|++++++.+++.+
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            3468999999998876554443 3456889999999876654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.90  E-value=13  Score=28.95  Aligned_cols=90  Identities=14%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcC------CCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARN------STNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~------~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      ++...=+.|..-|.|-+||+. ++.++.+.  +.-...+.|+..|      .+.+|+---.||+|..||..+++.+..+.
T Consensus       210 ~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       210 ADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             CcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence            333333445556899999986 88888774  2334567787765      35666666679999999999999888886


Q ss_pred             CCccccccCcceeeeEEEEcC
Q 023643          241 PVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      ......+.  ...++.++|..
T Consensus       289 ~~~G~pi~--i~GLWgL~fGn  307 (336)
T TIGR03118       289 DPDNHPVK--VDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEE--ecCeEEeeeCC
Confidence            54321111  23568888864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.87  E-value=2.6  Score=20.93  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             EEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          215 QIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       215 ~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .+..++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355669999999999999999988854

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.77  E-value=15  Score=29.69  Aligned_cols=190  Identities=15%  Similarity=0.181  Sum_probs=0.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .+-+.+||+++   +.++.+..-.-.-..+.+.-.......-||+++.-    .+|++|.+...                
T Consensus        77 ~~GL~VYdL~G---k~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~----------------  137 (381)
T PF02333_consen   77 KGGLYVYDLDG---KELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD----------------  137 (381)
T ss_dssp             TTEEEEEETTS----EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT----------------
T ss_pred             CCCEEEEcCCC---cEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC----------------


Q ss_pred             eeccccccccCCccCe---------EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643           78 LGIEPDGFLHGHDGPA---------YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ  148 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (279)
                        ...+..+.....++         .|+--+|.....+++..+.+|.+..|.+...........+-......-       
T Consensus       138 --~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-------  208 (381)
T PF02333_consen  138 --TGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-------  208 (381)
T ss_dssp             --TTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------
T ss_pred             --CCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-------


Q ss_pred             CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-----CCcEEEEeec--CCcceEEEEE----cCCCcEEE
Q 023643          149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-----SSRIKMVFKG--HSDYLHCIVA----RNSTNQIV  217 (279)
Q Consensus       149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~--~~~~i~~i~~----~~~~~~l~  217 (279)
                                  ++..+........|+.+-.+.-|.-|+.+     .++.+....+  ....|-.|+.    ...|.+|+
T Consensus       209 ------------Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLiv  276 (381)
T PF02333_consen  209 ------------QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIV  276 (381)
T ss_dssp             -------------EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEE
T ss_pred             ------------cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEE


Q ss_pred             EecCCCeEEEEeCC
Q 023643          218 TGSEDGTARIWDCK  231 (279)
Q Consensus       218 ~~~~d~~i~vwd~~  231 (279)
                      +.-.+++..||+.+
T Consensus       277 SsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  277 SSQGDNSFAVYDRE  290 (381)
T ss_dssp             EEGGGTEEEEEESS
T ss_pred             EcCCCCeEEEEecC

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.52  E-value=18  Score=30.21  Aligned_cols=62  Identities=13%  Similarity=0.199  Sum_probs=38.1

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGN  102 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  102 (279)
                      .-..-+.|+|.|    ++++|++--..|.|++++..+.......            .-+ .... .-.+....|+++|+-
T Consensus        28 GL~~Pw~maflP----DG~llVtER~~G~I~~v~~~~~~~~~~~------------~l~-~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGP----DNQLWVTERATGKILRVNPETGEVKVVF------------TLP-EIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcC----CCeEEEEEecCCEEEEEeCCCCceeeee------------cCC-ceeccCCCCceeeEEECCCc
Confidence            345678999999    8887777655799999876543211100            000 0111 125668999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.35  E-value=14  Score=28.57  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=36.8

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec------CCCcEEEEeCCC
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS------SDGSITSYSIPS   60 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~------~dg~i~iw~~~~   60 (279)
                      -.|.+||.++.+...+-  ..-.+.|+++.|..    +.++++.|.      ....+..||..+
T Consensus        16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~----~~~Llv~G~ft~~~~~~~~la~yd~~~   73 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWAS----NNQLLVGGNFTLNGTNSSNLATYDFKN   73 (281)
T ss_pred             CEEEEEECCCCEeecCC--CCceEEEEEEEEec----CCEEEEEEeeEECCCCceeEEEEecCC
Confidence            45788998887653332  22457899999987    677777774      455688888876

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.24  E-value=19  Score=29.47  Aligned_cols=107  Identities=9%  Similarity=0.012  Sum_probs=62.4

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCc-----EEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-----IKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      +..+.+.+++..++++ ..|.+.. ....++     .......  ....+..+.|.+++..+++| ..|.+.... ..|+
T Consensus       283 l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~  358 (398)
T PLN00033        283 IQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGK  358 (398)
T ss_pred             eeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCc
Confidence            6788999888877665 4565443 333343     2222221  12358889998877766555 677666543 4455


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .-......     ..-...+..+.|.++++.+++| .+|.|.-|
T Consensus       359 tW~~~~~~-----~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        359 SWKRDKGA-----DNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             ceeEcccc-----CCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            43333210     1223457789998877766665 66777654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.21  E-value=9.5  Score=31.37  Aligned_cols=174  Identities=10%  Similarity=0.121  Sum_probs=90.9

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cC-CccCeE-EE
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HG-HDGPAY-DV   96 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~-~~   96 (279)
                      .+......|..+-..|    |++.|..-+. .++.++++.+.....               +.+... .+ ....|+ .+
T Consensus       215 ~L~~~~~~v~qllL~P----dg~~LYv~~g-~~~~v~~L~~r~l~~---------------rkl~~dspg~~~~~Vte~l  274 (733)
T COG4590         215 LLSVPFSDVSQLLLTP----DGKTLYVRTG-SELVVALLDKRSLQI---------------RKLVDDSPGDSRHQVTEQL  274 (733)
T ss_pred             hcCCCccchHhhEECC----CCCEEEEecC-CeEEEEeecccccch---------------hhhhhcCCCchHHHHHHHH
Confidence            3444556778888889    8998877655 578899987642111               000000 00 001111 11


Q ss_pred             EecCCCCceEEEEeeCCCcEEEe-ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGW-RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      .....+.  .+..++.||-|.-| |.+.....         +...+..+....           ..+..+.-..+.+-++
T Consensus       275 ~lL~Gg~--SLLv~~~dG~vsQWFdvr~~~~p---------~l~h~R~f~l~p-----------a~~~~l~pe~~rkgF~  332 (733)
T COG4590         275 YLLSGGF--SLLVVHEDGLVSQWFDVRRDGQP---------HLNHIRNFKLAP-----------AEVQFLLPETNRKGFY  332 (733)
T ss_pred             HHHhCce--eEEEEcCCCceeeeeeeecCCCC---------cceeeeccccCc-----------ccceeeccccccceEE
Confidence            1222343  67788889988866 44322111         100000000000           0112222222334566


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      +-+..|++..+.....+.+- ++.-...+.-+++||.+.++++- ..|.|+++.+.+..+.-
T Consensus       333 ~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei  392 (733)
T COG4590         333 SLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEI  392 (733)
T ss_pred             EEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCc
Confidence            67777877776654433332 22223356778999999998875 46679999887755433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=84.84  E-value=18  Score=29.22  Aligned_cols=69  Identities=16%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecCC--cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHS--DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      ..++++..+|.|.-.|..+++.+.....-.  ..+..-.+..+|+ ++.++.++.+..+|.++|+.+.....
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~  139 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNV  139 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEec
Confidence            356666788899999999888765433221  1122212222555 77788899999999989998887753

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=84.23  E-value=0.69  Score=39.17  Aligned_cols=89  Identities=11%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccc---cC-cceeeeEE
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQL---KG-VISCVSCI  257 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~  257 (279)
                      +.+=|..+...+..|+.|..++..++|.+.+..+++++..|. |.++.  ....+.+.........   .+ -...+..+
T Consensus       297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfR--imet~~t~~~~~qs~~~s~ra~t~aviqdi  374 (788)
T KOG2109|consen  297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFR--IMETVCTVNVSDQSLVVSPRANTAAVIQDI  374 (788)
T ss_pred             EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEE--eccccccccccccccccchhcchHHHHHHH
Confidence            555677777888889999999999999999999999987773 44443  3332222221110000   11 12345667


Q ss_pred             EEcCCCCEEEEEcCcc
Q 023643          258 TLDASESWLVRVRATN  273 (279)
Q Consensus       258 ~~~~~~~~l~~~~~d~  273 (279)
                      +|+....+++.++.+|
T Consensus       375 cfs~~s~~r~~gsc~G  390 (788)
T KOG2109|consen  375 CFSEVSTIRTAGSCEG  390 (788)
T ss_pred             hhhhhcceEeecccCC
Confidence            8888888888777665

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=83.37  E-value=33  Score=30.73  Aligned_cols=73  Identities=8%  Similarity=0.077  Sum_probs=47.5

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      +.+.++..|   ++.++.+|.|.++...+......+..   |...|++|.+...+-+++..+.|- ++.++..+-.-.+.
T Consensus       629 vrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~-~rlfhtetl~hlqd  704 (925)
T KOG3522|consen  629 VRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE-ERLFHTETLWHLQD  704 (925)
T ss_pred             ccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE-EEEecccccCCccc
Confidence            566666543   55677799999999887655555443   456789999887776666665443 55555555443333

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=82.26  E-value=16  Score=33.02  Aligned_cols=59  Identities=7%  Similarity=0.017  Sum_probs=41.1

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEE-ecCCC-----eEEEEeCCC
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVT-GSEDG-----TARIWDCKS  232 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~-~~~d~-----~i~vwd~~~  232 (279)
                      +.++....+.|.+-|.....+... ++ +..+|.+-+|||||+.|+- .+.++     .|++-|+++
T Consensus       321 iAfv~~~~~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t  386 (912)
T TIGR02171       321 LAFRNDVTGNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA  386 (912)
T ss_pred             EEEEEcCCCeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence            334333335788888776555544 44 6788889999999999987 55554     488888876

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=81.32  E-value=4  Score=18.64  Aligned_cols=25  Identities=16%  Similarity=0.276  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          204 LHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       204 i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                      ...++.+++|+.+++=+....|++|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3566666667766666666666553

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=80.94  E-value=3.4  Score=36.08  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       202 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      ..++++.-+|.+..++.++.||+|++|+.-....
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q   48 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ   48 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence            4567788889999999999999999999765443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.53  E-value=25  Score=31.36  Aligned_cols=50  Identities=4%  Similarity=-0.062  Sum_probs=29.0

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS  212 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  212 (279)
                      ...++|+-....++++ ....+.+|-..+-.-.......-..+.-+.|+|.
T Consensus       298 ~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         298 AFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             hhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence            4566776655555544 3577999987654333222223344566778885

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.15  E-value=11  Score=23.18  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=27.0

Q ss_pred             EecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          218 TGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       218 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      .+..+|.+.-||..+++..-.+.         .-..-++|++++|+.+++.+
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~---------~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLD---------GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEE---------EESSEEEEEE-TTSSEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehh---------CCCccCeEEEcCCCCEEEEE
Confidence            34567888899998876543331         12245889999999977765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-10
2h9l_A	329	Wdr5delta23 Length = 329		8e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
           +++   P G  + S++ D     W     + +    GH   +  +   + +N +V+ S+D
Sbjct: 49  SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 108
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            T +IWD  SGKC+K         LKG  + V C   +   + +V
Sbjct: 109 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 145

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
           +++   P G  + S++ D     W     + +    GH   +  +   + +N +V+ S+D
Sbjct: 51  SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 110
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            T +IWD  SGKC+K         LKG  + V C   +   + +V
Sbjct: 111 KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 147

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES 190
           +  QG   KP     N+  K      +     +++   P G  + S++ D     W    
Sbjct: 14  LYFQGTQSKPTPVKPNYALKFTLAGHTKAV--SSVKFSPNGEWLASSSADKLIKIWGAYD 71
Query: 191 SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV 250
            + +    GH   +  +   + +N +V+ S+D T +IWD  SGKC+K         LKG 
Sbjct: 72  GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--------LKGH 123
Query: 251 ISCVSCITLDASESWLV 267
            + V C   +   + +V
Sbjct: 124 SNYVFCCNFNPQSNLIV 140

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 71  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPV 152

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 71  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPV 152

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 67  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPV 148

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 77  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPV 158

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 70  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPV 151

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
           +++   P G  + S++ D     W     + +    GH   +  +   + +N +V+ S+D
Sbjct: 33  SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            T +IWD  SGKC+K         LKG  + V C   +   + +V
Sbjct: 93  KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 129

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 72  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPV 153

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 77  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPV 158

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 76  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPV 157

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+GKC+K +    DPV
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPV 155

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
           +++   P G  + S++ D     W     + +    GH   +  +   + +N +V+ S+D
Sbjct: 30  SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            T +IWD  SGKC+K         LKG  + V C   +   + +V
Sbjct: 90  KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 126

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
           +++   P G  + S++ D     W     + +    GH   +  +   + +N +V+ S+D
Sbjct: 30  SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
            T +IWD  SGKC+K         LKG  + V C   +   + +V
Sbjct: 90  KTLKIWDVSSGKCLKT--------LKGHSNYVFCCNFNPQSNLIV 126

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+G C+K +    DPV
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPV 155

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 165 IAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGT 224
           +A       + SA+ D     WDV S +     KGHS+Y+ C      +N IV+GS D +
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 225 ARIWDCKSGKCIKVI----DPV 242
            RIWD K+G C+K +    DPV
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPV 155

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
           ++   P G  + + A D     WD+E+ +I M+ +GH   ++ +    S +++V+GS D 
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 224 TARIWDCKSGKC 235
           T RIWD ++G+C
Sbjct: 188 TVRIWDLRTGQC 199

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI 216
           S  P   A+A+ P     FS   D     WD+ +  +   F+GH+D   CI   N   ++
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 217 VTGSEDGTARIWDCKSGKCIKVID 240
            TG  D T R WD + G+ ++  D
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHD 222

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
            VD     I SA+GD     W+  +        GH   + C+  R+    +V+GS D T 
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTI 318
Query: 226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD 260
           R+WD + G C++V        L+G    V CI  D
Sbjct: 319 RLWDIECGACLRV--------LEGHEELVRCIRFD 345

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC--IVARNSTNQIVTGSEDGTARIWDCK 231
           I +A+GD     WDVES ++   F GH   + C  +    + N  V+G  D  A +WD +
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 232 SGKCIKVID 240
           SG+C++  +
Sbjct: 229 SGQCVQAFE 237

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
           N   ++   G  + S + D+    WDVE+        GH      +  ++  N +V+G+ 
Sbjct: 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA 337
Query: 222 DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS 262
           D T +IWD K+G+C++ +      Q     S V+C+  + +
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQ-----SAVTCLQFNKN 373

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84  GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
           G L GH+G    +    G  + LLLS   D  +  W+            L G+  K   P
Sbjct: 11  GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
           V     H H         + ++  +  D  G    SA+ D     WDV +      F GH
Sbjct: 58  VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              +  +      + I++GS D T ++W  K G+C+  +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84  GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
           G L GH+G    +    G  + LLLS   D  +  W+            L G+  K   P
Sbjct: 11  GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
           V     H H         + ++  +  D  G    SA+ D     WDV +      F GH
Sbjct: 58  VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              +  +      + I++GS D T ++W  K G+C+  +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84  GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
           G L GH+G    +    G  + LLLS   D  +  W+            L G+  K   P
Sbjct: 5   GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 51
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
           V     H H         + ++  +  D  G    SA+ D     WDV +      F GH
Sbjct: 52  VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              +  +      + I++GS D T ++W  K G+C+  +
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84  GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
           G L GH+G    +    G  + LLLS   D  +  W+            L G+  K   P
Sbjct: 11  GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
           V     H H         + ++  +  D  G    SA+ D     WDV +      F GH
Sbjct: 58  VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              +  +      + I++GS D T ++W  K G+C+  +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84  GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
           G L GH+G    +    G  + LLLS   D  +  W+            L G+  K   P
Sbjct: 11  GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
           V     H H         + ++  +  D  G    SA+ D     WDV +      F GH
Sbjct: 58  VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              +  +      + I++GS D T ++W  K G+C+  +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 32/170 (18%)
Query: 86  LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
           L GH     D+ F   +   LL SC  D  I  W ++ F              + +  + 
Sbjct: 146 LKGHTDSVQDISF--DHSGKLLASCSADMTIKLWDFQGF--------------ECIRTMH 189
Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
            H H             +++++ P G  I SA+ D     W+V++      F GH +++ 
Sbjct: 190 GHDHNV-----------SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255
            +        I + S D T R+W   + +C   +     ++ + V+ C+S
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL-----REHRHVVECIS 283

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 28/159 (17%)
Query: 84  GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVK---P 140
           G L GH+G    +    G  + LLLS   D  +  W+            L G+  K   P
Sbjct: 11  GTLEGHNGWVTSLATSAGQPN-LLLSASRDKTLISWK------------LTGDDQKFGVP 57
Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
           V     H H         + ++  +  D  G    SA+ D     WDV +      F GH
Sbjct: 58  VRSFKGHSH---------IVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              +  +      + I++GS D T ++W  K G+C+  +
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
            V   G  + S + D+    WDV   +   +  GH+D ++  +  +   + ++ S D T 
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 226 RIWDCKSGKCIKVI 239
           RIWD ++G+ +  +
Sbjct: 335 RIWDLENGELMYTL 348

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
            V   G  + S + D+    WDV   +   +  GH+D ++  +  +   + ++ S D T 
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 226 RIWDCKSGKC 235
           RIWD ++G+ 
Sbjct: 335 RIWDLENGEL 344

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
           ++++ P      S A D+ A  WDV     +  F GH   ++ I    + N   TGS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
           T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
           ++++ P      S A D+ A  WDV     +  F GH   ++ I    + N   TGS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
           T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
           ++++ P      S A D+ A  WDV     +  F GH   ++ I    + N   TGS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
           T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
           ++++ P      S A D+ A  WDV     +  F GH   ++ I    + N   TGS+D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 224 TARIWDCKSGK 234
           T R++D ++ +
Sbjct: 249 TCRLFDLRADQ 259

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
           ++++ P      S A D+ A  WDV     +  F GH   ++ I    + N   TGS+D 
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 224 TARIWDCKSGK 234
           T R++D ++ +
Sbjct: 260 TCRLFDLRADQ 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.43
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.13
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.1
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.96
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.92
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.87
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.7
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.52
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.47
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.43
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.41
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.31
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.29
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.29
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.28
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.22
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.19
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.11
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.98
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.81
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.8
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.78
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.52
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.41
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.31
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.2
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.16
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.76
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.66
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.65
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.64
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.59
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.56
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.4
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.28
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.17
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.07
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.94
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.66
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.97
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.56
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.37
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.59
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.39
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.77
3ott_A	758	Two-component system sensor histidine kinase; beta	92.42
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.41
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.99
3ott_A	758	Two-component system sensor histidine kinase; beta	90.0
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.29
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.96
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.93
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.59
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	85.98
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.49
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.4
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.23

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-45  Score=285.84  Aligned_cols=223  Identities=17%  Similarity=0.122  Sum_probs=185.3

Q ss_pred             CCCceeeeccccccccce--eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSIL--KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|+|||++..+....  ....+|.+.|++++|+|    ++++|++|+.||+|++||+.+                  
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp----dg~~l~sgs~d~~i~iwd~~~------------------  158 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS----SGTQAVSGSKDICIKVWDLAQ------------------  158 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT------------------
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC----CCCEEEEEeCCCeEEEEECCC------------------
Confidence            489999999887653222  23457999999999999    999999999999999999998                  


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       ++++..+.+|.+.|.+++|+|++. .+|++++.|++|++||+++.+.   ...+....                    +
T Consensus       159 -~~~~~~~~~h~~~V~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~--------------------~  213 (344)
T 4gqb_B          159 -QVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRILLWDTRCPKP---ASQIGCSA--------------------P  213 (344)
T ss_dssp             -TEEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSCEEEEETTSSSC---EEECC------------------------
T ss_pred             -CcEEEEEcCcCCceEEEEecCCCC-Cceeeeccccccccccccccce---eeeeecce--------------------e
Confidence             677888999999999999999875 3889999999999999875422   11111110                    0


Q ss_pred             CCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceE
Q 023643          159 VPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       159 ~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      ...+.+++|+|+ +++|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||++++++.
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF  293 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence            113689999995 4578899999999999999999999999999999999999987 67999999999999999988765


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd  279 (279)
                      . +        .+|...|++++|+|+++ +|++|+.|++|++|+
T Consensus       294 ~-~--------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          294 R-S--------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             E-E--------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             E-E--------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            3 4        68999999999999986 567899999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-44  Score=276.30  Aligned_cols=219  Identities=15%  Similarity=0.257  Sum_probs=195.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++||++..+  .+..+..|...+.+++|+|    ++++|++|+.||.|++|++.+                   +
T Consensus       100 ~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~sp----dg~~l~~g~~dg~v~i~~~~~-------------------~  154 (321)
T 3ow8_A          100 LDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSP----DSQYLATGTHVGKVNIFGVES-------------------G  154 (321)
T ss_dssp             TTSEEEEEETTTTE--EEEEEECCTTCCCCEEECT----TSSEEEEECTTSEEEEEETTT-------------------C
T ss_pred             CCCcEEEEECCCCC--EEEEEeCCCccEEEEEECC----CCCEEEEEcCCCcEEEEEcCC-------------------C
Confidence            48999999988764  4667788889999999999    999999999999999999998                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +....+..|...|.+++|+|+++  +|++++.||.|++||+++.   +....+.++.                      .
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg~--~lasg~~dg~i~iwd~~~~---~~~~~~~~h~----------------------~  207 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDGK--YLASGAIDGIINIFDIATG---KLLHTLEGHA----------------------M  207 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT---EEEEEECCCS----------------------S
T ss_pred             ceeEEecCCCceEEEEEECCCCC--EEEEEcCCCeEEEEECCCC---cEEEEEcccC----------------------C
Confidence            55566778889999999999998  9999999999999998653   2222222211                      1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|++++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++++..+ 
T Consensus       208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-  286 (321)
T 3ow8_A          208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-  286 (321)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred             ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|...|.+++|+|++++|++++.||.|++||
T Consensus       287 -------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          287 -------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             -------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             -------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence                   68889999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.3e-44  Score=277.79  Aligned_cols=221  Identities=15%  Similarity=0.160  Sum_probs=197.0

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++|+.+..+......+.+|...|.+++|+|    ++.++++++.|++|++||+.+                   +
T Consensus        56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~----~~~~l~s~s~D~~i~lWd~~~-------------------~  112 (321)
T 3ow8_A           56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH----TLPIAASSSLDAHIRLWDLEN-------------------G  112 (321)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTT-------------------T
T ss_pred             CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC----CCCEEEEEeCCCcEEEEECCC-------------------C
Confidence            48999999988765555667889999999999999    899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+..|...+.+++|+|+++  +|++++.||.|++|+++...   ....+..+                      ..
T Consensus       113 ~~~~~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~---~~~~~~~~----------------------~~  165 (321)
T 3ow8_A          113 KQIKSIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGK---KEYSLDTR----------------------GK  165 (321)
T ss_dssp             EEEEEEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCS---EEEEEECS----------------------SS
T ss_pred             CEEEEEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCc---eeEEecCC----------------------Cc
Confidence            66677788888999999999998  99999999999999986532   12222111                      11


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+.+++|+|++++|++++.|+.|++||+++++++..+++|..+|.+++|+|++++|++++.|+.|++||+++++....+ 
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-  244 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-  244 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-
Confidence            3789999999999999999999999999999999999999999999999999999999999999999999999998888 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|...|.+++|+|++.+|++|+.|++|++||
T Consensus       245 -------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          245 -------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD  276 (321)
T ss_dssp             -------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence                   78889999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-43  Score=281.68  Aligned_cols=219  Identities=18%  Similarity=0.289  Sum_probs=196.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++||+.+..  ....+.+|...|.+++|+|    ++++|++|+.||+|++||+.+                   .
T Consensus       128 ~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~----~~~~l~sgs~D~~i~iwd~~~-------------------~  182 (410)
T 1vyh_C          128 EDATIKVWDYETGD--FERTLKGHTDSVQDISFDH----SGKLLASCSADMTIKLWDFQG-------------------F  182 (410)
T ss_dssp             SSSCEEEEETTTCC--CCEEECCCSSCEEEEEECT----TSSEEEEEETTSCCCEEETTS-------------------S
T ss_pred             CCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCC-------------------C
Confidence            48999999988774  4678889999999999999    899999999999999999987                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|...|.+++|+|++.  +|++++.|++|++||+++.   .....+.++.                      .
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~----------------------~  235 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTG---YCVKTFTGHR----------------------E  235 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------S
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEeCCC----------------------c
Confidence            66778889999999999999998  9999999999999998653   2222333221                      1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC--------------------CcEEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS--------------------TNQIVTGS  220 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~  220 (279)
                      .|.++.++|++.++++++.|+.|++||++++++...+.+|...|.+++|+|+                    +.+|++|+
T Consensus       236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            3789999999999999999999999999999999999999999999999996                    67899999


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .|+.|++||+++++++..+        .+|...|.+++|+|++++|++|+.|+.|++||
T Consensus       316 ~D~~i~iwd~~~~~~~~~~--------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd  366 (410)
T 1vyh_C          316 RDKTIKMWDVSTGMCLMTL--------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWD  366 (410)
T ss_dssp             TTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred             CCCeEEEEECCCCceEEEE--------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999888        68889999999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-43  Score=281.33  Aligned_cols=219  Identities=20%  Similarity=0.323  Sum_probs=195.5

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++||+++.  ..+..+.+|...|.+++|+|    ++++|++|+.|++|++||+.+                   +
T Consensus       170 ~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p----~~~~l~s~s~D~~i~~wd~~~-------------------~  224 (410)
T 1vyh_C          170 ADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTIKMWEVQT-------------------G  224 (410)
T ss_dssp             TTSCCCEEETTSS--CEEECCCCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTT-------------------C
T ss_pred             CCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence            4899999998876  44778889999999999999    899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .++..+.+|...|.++.|+|++.  +|++++.|++|++||+++.   .....+.++.                      .
T Consensus       225 ~~~~~~~~h~~~v~~~~~~~~g~--~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~----------------------~  277 (410)
T 1vyh_C          225 YCVKTFTGHREWVRMVRPNQDGT--LIASCSNDQTVRVWVVATK---ECKAELREHR----------------------H  277 (410)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTC---CEEEEECCCS----------------------S
T ss_pred             cEEEEEeCCCccEEEEEECCCCC--EEEEEcCCCeEEEEECCCC---ceeeEecCCC----------------------c
Confidence            66778889999999999999998  9999999999999998643   2222222211                      1


Q ss_pred             CceeEEEcCC--------------------CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643          161 ENNAIAVDPQ--------------------GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       161 ~i~~~~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  220 (279)
                      .|.+++|+|+                    +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++|+
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence            3678888885                    66899999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .||.|++||+++++++..+        .+|...|++++|+|++.+|++|+.||+|++|+
T Consensus       358 ~D~~i~vwd~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          358 DDKTLRVWDYKNKRCMKTL--------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             TTTEEEEECCTTSCCCEEE--------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCeEEEEECCCCceEEEE--------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            9999999999999998888        68889999999999999999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-43  Score=277.74  Aligned_cols=223  Identities=13%  Similarity=0.138  Sum_probs=183.5

Q ss_pred             CCCceeeecccccccccee--eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILK--EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||+|+|||+...+.....  ...+|...|++++|+|    ++++|++|+.||+|++||+.+                  
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp----dg~~l~sgs~dg~v~iwd~~~------------------  170 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS----DGTQAVSGGKDFSVKVWDLSQ------------------  170 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTT------------------
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC----CCCEEEEEeCCCeEEEEECCC------------------
Confidence            4899999998876533322  3447899999999999    999999999999999999998                  


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       ++.+..+.+|...|.+++|+|++. .++++++.|+.|++||+++....... ....                      +
T Consensus       171 -~~~~~~~~~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~----------------------~  225 (357)
T 4g56_B          171 -KAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRI-DFCA----------------------S  225 (357)
T ss_dssp             -TEEEEEECCCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBC-CCTT----------------------C
T ss_pred             -CcEEEEEcCCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeee-eecc----------------------c
Confidence             677788889999999999999875 37999999999999998754221111 1111                      1


Q ss_pred             CCCceeEEEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceE
Q 023643          159 VPENNAIAVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       159 ~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      ...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++.+
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            1237899999975 578899999999999999999999999999999999999986 67999999999999999999887


Q ss_pred             EEecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+         +|...|++++|+| ++.+|++|+.||+|++|+
T Consensus       306 ~~~---------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          306 RDL---------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EEC---------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEC---------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            654         7889999999998 799999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.6e-43  Score=270.25  Aligned_cols=220  Identities=16%  Similarity=0.258  Sum_probs=190.5

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++..  .+..+..|..+|.+++|+|    ++++|++|+.|++|++||+.+                   +
T Consensus        33 ~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~----~~~~l~s~s~d~~i~vwd~~~-------------------~   87 (304)
T 2ynn_A           33 YSGRVELWNYETQV--EVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNT-------------------G   87 (304)
T ss_dssp             TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTT-------------------C
T ss_pred             CCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeC----CCCEEEEECCCCEEEEEECCC-------------------C
Confidence            48999999988763  4778888999999999999    899999999999999999998                   6


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|.+.|.+++|+|+++  +|++|+.|++|++||++...  .....+.++                      ..
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h----------------------~~  141 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNW--ALEQTFEGH----------------------EH  141 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTT--EEEEEECCC----------------------CS
T ss_pred             cEEEEEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCc--chhhhhccc----------------------CC
Confidence            67778899999999999999998  99999999999999986421  111122221                      12


Q ss_pred             CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcC--CCcEEEEecCCCeEEEEeCCCCceE
Q 023643          161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARN--STNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      .|.+++|+| ++..|++|+.|+.|++||++++.+...+. +|...+..++|+|  ++.+|++|+.|++|++||+++++++
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~  221 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc
Confidence            479999999 57899999999999999998877665554 4667899999987  6789999999999999999999999


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+        .+|...|.+++|+|++++|++|+.||+|++||
T Consensus       222 ~~~--------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          222 ATL--------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             EEE--------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             eee--------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            998        78889999999999999999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-41  Score=259.97  Aligned_cols=230  Identities=16%  Similarity=0.211  Sum_probs=184.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|+|||+++.....+..+.+|.++|++++|+|.  .++++||+|+.||+|++||+.++.                 .
T Consensus        29 ~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~--~~g~~l~s~s~D~~v~iWd~~~~~-----------------~   89 (297)
T 2pm7_B           29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--KFGTILASCSYDGKVMIWKEENGR-----------------W   89 (297)
T ss_dssp             TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG--GGCSEEEEEETTTEEEEEEBSSSC-----------------B
T ss_pred             CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC--CcCCEEEEEcCCCEEEEEEcCCCc-----------------e
Confidence            489999999876544567788999999999999861  137899999999999999998632                 1


Q ss_pred             cccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      ..+..+.+|...|.+++|+|+  +.  +|++++.|+.|++||++...... ...+.++                      
T Consensus        90 ~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h----------------------  144 (297)
T 2pm7_B           90 SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTS-PIIIDAH----------------------  144 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBC-CEEEECC----------------------
T ss_pred             EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCcee-eeeeecc----------------------
Confidence            344566789999999999997  66  99999999999999987532111 1111111                      


Q ss_pred             CCCceeEEEcCC-------------CCeEEEecCCCeEEEEecCCCc----EEEEeecCCcceEEEEEcCCC---cEEEE
Q 023643          159 VPENNAIAVDPQ-------------GGAIFSAAGDSCAYCWDVESSR----IKMVFKGHSDYLHCIVARNST---NQIVT  218 (279)
Q Consensus       159 ~~~i~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~---~~l~~  218 (279)
                      ...|.+++|+|+             +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence            123789999986             4689999999999999998765    667888999999999999984   89999


Q ss_pred             ecCCCeEEEEeCCCCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          219 GSEDGTARIWDCKSGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       219 ~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.|++|++||++...  .......     ...|...|.+++|+|++++||+++.|+.|++|+
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLK-----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESS-----SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             EECCCcEEEEEeCCCCCccceeeee-----cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            9999999999998743  1222211     036778899999999999999999999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-41  Score=265.15  Aligned_cols=220  Identities=16%  Similarity=0.214  Sum_probs=190.0

Q ss_pred             CCCceeeecccccc--ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|++|++....  ......+.+|...|.++.|++    ++ .+++++.|++|++||+.+                  
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~-~l~s~s~d~~i~~wd~~~------------------  173 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD----DN-QIVTSSGDTTCALWDIET------------------  173 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE----TT-EEEEEETTSCEEEEETTT------------------
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC----CC-cEEEEECCCcEEEEECCC------------------
Confidence            48999999987643  234567788999999999998    54 589999999999999998                  


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       ++.+..+.+|.+.|.+++|+|++.  +|++++.|++|++||+++.   .....+.++                      
T Consensus       174 -~~~~~~~~~h~~~v~~~~~~~~~~--~l~sg~~d~~v~~wd~~~~---~~~~~~~~h----------------------  225 (340)
T 1got_B          174 -GQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREG---MCRQTFTGH----------------------  225 (340)
T ss_dssp             -TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTC---SEEEEECCC----------------------
T ss_pred             -CcEEEEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCC---eeEEEEcCC----------------------
Confidence             566778889999999999999998  9999999999999998653   222222221                      


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      ...|++++|+|++++|++|+.|+.|++||+++++.+..+..  +...|.+++|+|++++|++|+.|+.|++||+.+++.+
T Consensus       226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence            12479999999999999999999999999999888877753  3357999999999999999999999999999999998


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+        .+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus       306 ~~~--------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 GVL--------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEE--------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEe--------ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            888        78999999999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.9e-41  Score=261.88  Aligned_cols=247  Identities=13%  Similarity=0.160  Sum_probs=196.5

Q ss_pred             CCCceeeeccccccc---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .||+|++|++.....   ..+..+.+|...|.+++|+|    ++.+|++|+.|++|++||+.+                 
T Consensus        38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----dg~~l~s~s~D~~v~~wd~~~-----------------   96 (319)
T 3frx_A           38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA----DGAYALSASWDKTLRLWDVAT-----------------   96 (319)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred             CCccEEEecCCCCCccccccceEEeCCcccEEEEEECC----CCCEEEEEeCCCEEEEEECCC-----------------
Confidence            489999999865432   23567889999999999999    999999999999999999998                 


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee------------
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV------------  145 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------------  145 (279)
                        ++.+..+.+|..+|.+++|+|++.  +|++++.|++|++||++..    ....+.++ ...+..+.            
T Consensus        97 --~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~----~~~~~~~h-~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           97 --GETYQRFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQ----CLATLLGH-NDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             --TEEEEEEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSC----EEEEECCC-SSCEEEEEECCC------CC
T ss_pred             --CCeeEEEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCC----eEEEEecc-CCcEEEEEEccCCCCCCCcc
Confidence              667778889999999999999998  9999999999999998632    12222211 11111110            


Q ss_pred             ------cCCCCCcc---------ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEc
Q 023643          146 ------NHQHKGPW---------GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVAR  210 (279)
Q Consensus       146 ------~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  210 (279)
                            ....-..|         ....+...|.+++|+|++++|++++.|+.|++||+.+++.+..+.. ...|.+++|+
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s  246 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFS  246 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEc
Confidence                  01111111         1234567899999999999999999999999999999999998875 4689999999


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          211 NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       211 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |++.+|++++.+ .+++|++..+..+..+..........|...+.+++|+|+|++|++|+.||.|++||
T Consensus       247 p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          247 PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             SSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            999999988755 59999999888877776543222345677899999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.7e-41  Score=257.28  Aligned_cols=218  Identities=16%  Similarity=0.197  Sum_probs=185.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++..+  .+..+.+|...|.+++|+|    ++.+|++|+.||+|++||+.+.                  .
T Consensus        75 ~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~----~~~~l~sgs~D~~v~lWd~~~~------------------~  130 (304)
T 2ynn_A           75 DDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHP----TKPYVLSGSDDLTVKLWNWENN------------------W  130 (304)
T ss_dssp             TTSEEEEEETTTCC--EEEEEECCSSCEEEEEECS----SSSEEEEEETTSCEEEEEGGGT------------------T
T ss_pred             CCCEEEEEECCCCc--EEEEEeCCCCcEEEEEEcC----CCCEEEEECCCCeEEEEECCCC------------------c
Confidence            48999999988774  4778889999999999999    8999999999999999999863                  2


Q ss_pred             cccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .....+.+|...|.+++|+|. +.  +|++|+.|++|++||++....   ...+...+.                     
T Consensus       131 ~~~~~~~~h~~~v~~v~~~p~~~~--~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~---------------------  184 (304)
T 2ynn_A          131 ALEQTFEGHEHFVMCVAFNPKDPS--TFASGCLDRTVKVWSLGQSTP---NFTLTTGQE---------------------  184 (304)
T ss_dssp             EEEEEECCCCSCEEEEEECTTCTT--EEEEEETTSEEEEEETTCSSC---SEEEECCCT---------------------
T ss_pred             chhhhhcccCCcEEEEEECCCCCC--EEEEEeCCCeEEEEECCCCCc---cceeccCCc---------------------
Confidence            444667889999999999994 55  999999999999999864321   111211111                     


Q ss_pred             CCceeEEEcC--CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          160 PENNAIAVDP--QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       160 ~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      ..+..+.|+|  ++.+|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+.
T Consensus       185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence            1367888876  67799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCC--EEEEEcCcceEE
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASES--WLVRVRATNYVI  276 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~  276 (279)
                      .+        ..|...+.+++|+|++.  ++++|+.||.+.
T Consensus       265 ~~--------~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          265 TL--------NVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             EE--------CCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             ec--------cCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            98        67778899999999875  688888877554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.6e-41  Score=261.25  Aligned_cols=224  Identities=18%  Similarity=0.302  Sum_probs=191.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||.....  .+..+..|...|.+++|+|    ++++|++|+.|+.|++|++.+....               .
T Consensus        75 ~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~d~~v~iw~~~~~~~~---------------~  133 (340)
T 1got_B           75 QDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAP----SGNYVACGGLDNICSIYNLKTREGN---------------V  133 (340)
T ss_dssp             TTTEEEEEETTTCC--EEEEEECSSSCEEEEEECT----TSSEEEEEETTCEEEEEETTTCSBS---------------C
T ss_pred             CCCcEEEEECCCCC--cceEeecCCccEEEEEECC----CCCEEEEEeCCCeEEEEECccCCCc---------------c
Confidence            48999999987764  4667888999999999999    8999999999999999999864211               1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+.+|.+.|.++.|++++   .+++++.|++|++||+++.   .....+.++.                      .
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~----------------------~  185 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETG---QQTTTFTGHT----------------------G  185 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTT---EEEEEECCCS----------------------S
T ss_pred             eeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCC---cEEEEEcCCC----------------------C
Confidence            3345677899999999999876   6999999999999998653   2222222221                      2


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999998887764


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .      ..+...|++++|+|++++|++|+.|+.|++||
T Consensus       266 ~------~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          266 H------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             C------TTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             c------CCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence            2      23445799999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-41  Score=263.51  Aligned_cols=231  Identities=14%  Similarity=0.238  Sum_probs=177.9

Q ss_pred             CCCceeeeccccccccceeee-ee-cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILKER-EI-LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|++||++......+..+ .. |...|.+++|+|    ++++|++|+.|++|++|++......            ..
T Consensus        32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp----~~~~las~s~D~~v~iw~~~~~~~~------------~~   95 (330)
T 2hes_X           32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP----HTSLLAAGSFDSTVSIWAKEESADR------------TF   95 (330)
T ss_dssp             SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT----TSSEEEEEETTSCEEEEEC-------------------C
T ss_pred             CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC----CCCEEEEEeCCCcEEEEEcccCcCc------------cc
Confidence            489999999876533334444 33 999999999999    8999999999999999998642100            00


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc-CcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE-SKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      ..+.+..+.+|.++|.+++|+|+++  +|++++.|++|++||++.... ......+.++                     
T Consensus        96 ~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h---------------------  152 (330)
T 2hes_X           96 EMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISVLQEH---------------------  152 (330)
T ss_dssp             CCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEEECCC---------------------
T ss_pred             cceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEEeccC---------------------
Confidence            0344567789999999999999998  999999999999999853211 1122222221                     


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcCC--CcEEEEecCCCeEEEEeCCCC
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNS--TNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~  233 (279)
                       ...|.+++|+|++.+|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++.|++|++||++.+
T Consensus       153 -~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          153 -SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             -SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             -CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence             124799999999999999999999999999876  678889999999999999998  778999999999999998754


Q ss_pred             --------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          234 --------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 --------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .+...+.       ..|...|.+++|++++ +|++++.||.|++||
T Consensus       232 ~~~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~  277 (330)
T 2hes_X          232 DEDDQQEWVCEAILP-------DVHKRQVYNVAWGFNG-LIASVGADGVLAVYE  277 (330)
T ss_dssp             CTTSCEEEEEEEECC-------SCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred             CccccceeEEeeecc-------cccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence                    2333331       2388899999999765 799999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-40  Score=261.52  Aligned_cols=223  Identities=15%  Similarity=0.192  Sum_probs=190.3

Q ss_pred             CCCceeeecccccc----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            1 MCGDSTNWDEDAYR----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         1 ~dG~v~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      .||.+++|++....    ......+..|...|.+++|+|    ++..|++++.|++|++||+++                
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~t~s~D~~v~lwd~~~----------------  185 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN----SDMQILTASGDGTCALWDVES----------------  185 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS----SSSEEEEEETTSEEEEEETTT----------------
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC----CCCEEEEEeCCCcEEEEeCCC----------------
Confidence            47899999875321    234556778999999999999    899999999999999999998                


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                         ++.+..+.+|...|.+++|+|+..+.+|++|+.||+|++||+++.   .....+.++                    
T Consensus       186 ---~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h--------------------  239 (354)
T 2pbi_B          186 ---GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETH--------------------  239 (354)
T ss_dssp             ---CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCC--------------------
T ss_pred             ---CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCC--------------------
Confidence               667788889999999999998533349999999999999998753   222222221                    


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                        ...|++++|+|++.+|++++.|++|++||+++++.+..+..+  ...+.+++|+|++++|++|+.|+.|++||+.+++
T Consensus       240 --~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          240 --ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             --SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             --CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence              124799999999999999999999999999998887776543  3478999999999999999999999999999999


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..+        .+|...|++++|+|++++|++|+.|++|++|+
T Consensus       318 ~~~~l--------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          318 RVSIL--------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEE--------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eEEEE--------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            88888        68999999999999999999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=264.56  Aligned_cols=227  Identities=19%  Similarity=0.216  Sum_probs=185.4

Q ss_pred             CCCceeeecccccccccee-eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILK-EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .||.|+|||+++....... ...+|...|.+++|+|    ++++|++|+.|++|++|++....                 
T Consensus        36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~-----------------   94 (345)
T 3fm0_A           36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP----CGNYLASASFDATTCIWKKNQDD-----------------   94 (345)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEECCC------------------
T ss_pred             CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC----CCCEEEEEECCCcEEEEEccCCC-----------------
Confidence            4899999998876432222 3367999999999999    99999999999999999987632                 


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .+.+..+.+|..+|.+++|+|+++  +|++++.|++|++||++..........+.++                      .
T Consensus        95 ~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h----------------------~  150 (345)
T 3fm0_A           95 FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSH----------------------T  150 (345)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCC----------------------C
T ss_pred             eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCc----------------------C
Confidence            245667889999999999999998  9999999999999998754222222222221                      1


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC----
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG----  233 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~----  233 (279)
                      ..|.+++|+|++.+|++++.|+.|++||.++++  +...+.+|...|++++|+|++++|++++.|++|++||....    
T Consensus       151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence            247899999999999999999999999998775  45678899999999999999999999999999999996432    


Q ss_pred             -----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          234 -----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                                 +++..+.       ..|...|.+++|+|++..|++++.|+.|++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLS-------GFHSRTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             CCCCC---CEEEEEEEEC-------SSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             cceeeccCCccceeEEec-------CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence                       1222331       23788999999999999999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.7e-42  Score=264.22  Aligned_cols=230  Identities=17%  Similarity=0.205  Sum_probs=182.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|+|||++......+..+.+|..+|++++|+|.  .++++|++|+.|++|++||+.++.                 .
T Consensus        33 ~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~--~~~~~l~s~s~D~~v~iWd~~~~~-----------------~   93 (316)
T 3bg1_A           33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP--MYGNILASCSYDRKVIIWREENGT-----------------W   93 (316)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG--GGSSCEEEEETTSCEEEECCSSSC-----------------C
T ss_pred             CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC--CCCCEEEEEECCCEEEEEECCCCc-----------------c
Confidence            489999999887654456788899999999999861  137899999999999999998631                 1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+.+|...|.+++|+|+..+.+|++++.|++|++||++............+ +                     ..
T Consensus        94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h---------------------~~  151 (316)
T 3bg1_A           94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-H---------------------TI  151 (316)
T ss_dssp             CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-S---------------------SS
T ss_pred             eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-c---------------------cC
Confidence            3345677899999999999983223999999999999999864311100111111 1                     12


Q ss_pred             CceeEEEcCC-----------------CCeEEEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCC----cEE
Q 023643          161 ENNAIAVDPQ-----------------GGAIFSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNST----NQI  216 (279)
Q Consensus       161 ~i~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~----~~l  216 (279)
                      .+.+++|+|+                 +.+|++|+.|+.|++||++..   +++..+.+|...|.+++|+|++    ++|
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence            3678888886                 468999999999999999754   4677889999999999999986    899


Q ss_pred             EEecCCCeEEEEeCCCCc----eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGK----CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++.|++|++||+++..    ....+        ..|...|.+++|+|++++|++++.|+.|++|+
T Consensus       232 as~s~D~~v~iw~~~~~~~~~~~~~~~--------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDDASSNTWSPKLL--------HKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             EEEETTCEEEEEECSSTTCCCCBCCEE--------EECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             EEEcCCCeEEEEEccCccccchhhhhh--------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            999999999999987631    11223        46778999999999999999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.4e-40  Score=258.70  Aligned_cols=223  Identities=15%  Similarity=0.221  Sum_probs=175.0

Q ss_pred             CCceeeeccccc---------cccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc
Q 023643            2 CGDSTNWDEDAY---------RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         2 dG~v~iw~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      |+++|+||....         ..........+...|.+++|+|    + ..|++|+.||+|+|||+.+++...       
T Consensus        50 d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----d-~~l~~~s~dg~v~lWd~~~~~~~~-------  117 (344)
T 4gqb_B           50 SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG----E-RGILVASDSGAVELWELDENETLI-------  117 (344)
T ss_dssp             CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET----T-TEEEEEETTSEEEEEEECTTSSCE-------
T ss_pred             CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC----C-CeEEEEECCCEEEEEeccCCCcee-------
Confidence            567888873211         0111222334667899999999    6 578899999999999998843211       


Q ss_pred             ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           73 KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                              .....+.+|.+.|.+++|+|+++  +|++|+.|++|++||+++.   .....+.++.               
T Consensus       118 --------~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~---------------  169 (344)
T 4gqb_B          118 --------VSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQ---VVLSSYRAHA---------------  169 (344)
T ss_dssp             --------EEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT---EEEEEECCCS---------------
T ss_pred             --------EeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEcCcC---------------
Confidence                    11123458999999999999998  9999999999999998653   3333333321               


Q ss_pred             cccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCC-CcEEEEecCCCeEEEE
Q 023643          153 WGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNS-TNQIVTGSEDGTARIW  228 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vw  228 (279)
                             ..|++++|+|++. +|++++.|+.|++||++++++...+.  .+...+.+++|+|+ +++|++|+.||+|++|
T Consensus       170 -------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w  242 (344)
T 4gqb_B          170 -------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV  242 (344)
T ss_dssp             -------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             -------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence                   2479999999885 67899999999999999999888775  35567999999995 6789999999999999


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      |+++++++..+        .+|...|++++|+|++ ++|++|+.|++|++||
T Consensus       243 d~~~~~~~~~~--------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd  286 (344)
T 4gqb_B          243 DTKSTSCVLSS--------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD  286 (344)
T ss_dssp             ESCC--CCEEE--------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             ECCCCcEEEEE--------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence            99999999988        7899999999999998 5799999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.9e-39  Score=253.35  Aligned_cols=227  Identities=16%  Similarity=0.250  Sum_probs=189.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++||.....  ....+..|...|.+++|+|    ++.+|++|+.|+.+++|++........             .
T Consensus        84 ~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp----~g~~lasg~~d~~i~v~~~~~~~~~~~-------------~  144 (354)
T 2pbi_B           84 QDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAP----SGCAIACGGLDNKCSVYPLTFDKNENM-------------A  144 (354)
T ss_dssp             TTSEEEEEETTTCC--EEEEEECSSSCCCEEEECT----TSSEEEEESTTSEEEEEECCCCTTCCS-------------G
T ss_pred             CCCeEEEEECCCCC--cceEEecCCCCEEEEEECC----CCCEEEEeeCCCCEEEEEEeccccccc-------------c
Confidence            48999999977653  3556777889999999999    999999999999999999875321110             2


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+.+|.+.|.+++|+|++.  .|++++.|++|++||+++.   .....+.++.                      .
T Consensus       145 ~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~----------------------~  197 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESG---QLLQSFHGHG----------------------A  197 (354)
T ss_dssp             GGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------S
T ss_pred             ccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCC---eEEEEEcCCC----------------------C
Confidence            33455678999999999999998  9999999999999998653   2233333221                      1


Q ss_pred             CceeEEEcC--CCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          161 ENNAIAVDP--QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       161 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      .|.+++|+|  ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++.++.+..
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            378889987  467999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +..      ..+...+.+++|+|++++|++|+.|+.|++||
T Consensus       278 ~~~------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd  312 (354)
T 2pbi_B          278 YSK------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWD  312 (354)
T ss_dssp             ECC------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EcC------CCcccceeEEEEeCCCCEEEEEECCCcEEEEE
Confidence            642      23445789999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.4e-40  Score=259.96  Aligned_cols=227  Identities=11%  Similarity=0.209  Sum_probs=186.5

Q ss_pred             CCCceeeecccccc-----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643            1 MCGDSTNWDEDAYR-----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         1 ~dG~v~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      .||.+++|++....     ......+.+|.+.|.++.|+|.   ++.+|++|+.|++|++||+.++              
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~---~~~~l~s~s~D~~i~~wd~~~~--------------  190 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD---QETRLITGSGDQTCVLWDVTTG--------------  190 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS---SSSCEEEECTTSCEEEECTTTC--------------
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC---CCCEEEEECCCCcEEEEEcCCC--------------
Confidence            48999999976432     2345567899999999999993   4678999999999999999984              


Q ss_pred             eeeeccccccc-----cCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           76 QLLGIEPDGFL-----HGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        76 ~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                           +.+..+     .+|...|.+++|+| ++.  +|++|+.|++|++||++...  .....+.++             
T Consensus       191 -----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h-------------  248 (380)
T 3iz6_a          191 -----QRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLWDLRITS--RAVRTYHGH-------------  248 (380)
T ss_dssp             -----CEEEEECCCSSSSCCSCEEEEEECSSSCC--EEEEEETTSCEEEEETTTTC--CCCEEECCC-------------
T ss_pred             -----cEEEEeecccCCCCccCeEEEEeecCCCC--EEEEEECCCeEEEEECCCCC--cceEEECCc-------------
Confidence                 222222     57999999999987 555  99999999999999986321  122222221             


Q ss_pred             CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-------cceEEEEEcCCCcEEEEecCC
Q 023643          150 KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-------DYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~d  222 (279)
                               ...|++++|+|++.+|++|+.|++|++||+++++.+..+..+.       ..|++++|+|++++|++|+.|
T Consensus       249 ---------~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  319 (380)
T 3iz6_a          249 ---------EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN  319 (380)
T ss_dssp             ---------SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred             ---------CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC
Confidence                     1248999999999999999999999999999999988876543       248999999999999999999


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |.|++||+.+++.+..+....    .+|...|++++|+|++.+|++|+.|++|++|+
T Consensus       320 g~i~vwd~~~~~~~~~~~~~~----~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVLNLGTLQ----NSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SCEEEEETTTCCEEEEECCSC----SSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CCEEEEECCCCceEEEEeccc----CCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            999999999998887764322    57889999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-39  Score=272.76  Aligned_cols=228  Identities=18%  Similarity=0.265  Sum_probs=190.0

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCcccce
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      .||+|+|||+..........+.+|.++|.+++|+|    ++++|++++.+    +.|++||..                 
T Consensus        79 ~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~----dg~~l~~~~~~~~~~~~v~~wd~~-----------------  137 (611)
T 1nr0_A           79 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS----ESKRIAAVGEGRERFGHVFLFDTG-----------------  137 (611)
T ss_dssp             TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT----TSCEEEEEECCSSCSEEEEETTTC-----------------
T ss_pred             CCCCEEEeECCCCcceeeEeecccCCceEEEEECC----CCCEEEEEECCCCceeEEEEeeCC-----------------
Confidence            48999999987554444567888999999999999    89999988765    478888843                 


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                          +....+.+|.+.|.+++|+|++. ..|++++.|++|++||.+..   +....+.++.                   
T Consensus       138 ----~~~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~-------------------  190 (611)
T 1nr0_A          138 ----TSNGNLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIFEGPPF---KFKSTFGEHT-------------------  190 (611)
T ss_dssp             ----CBCBCCCCCSSCEEEEEECSSSS-CEEEEEETTSCEEEEETTTB---EEEEEECCCS-------------------
T ss_pred             ----CCcceecCCCCCceEEEECCCCC-eEEEEEeCCCeEEEEECCCC---eEeeeecccc-------------------
Confidence                34567789999999999999986 36999999999999996532   2222333221                   


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                         ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.       +|.+.|.+++|+|++++|++++.|++|++||
T Consensus       191 ---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          191 ---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             ---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence               237999999999999999999999999999999988884       7999999999999999999999999999999


Q ss_pred             CCCCceEEEecCCc-----------------------------------cccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          230 CKSGKCIKVIDPVK-----------------------------------DKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       230 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      +++++++..+....                                   ...+.+|...|++++|+|++++|++++.|+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence            99988877664221                                   1123578999999999999999999999999


Q ss_pred             EEeCC
Q 023643          275 VILFS  279 (279)
Q Consensus       275 i~~wd  279 (279)
                      |++||
T Consensus       348 v~~Wd  352 (611)
T 1nr0_A          348 INSWD  352 (611)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-39  Score=271.22  Aligned_cols=214  Identities=20%  Similarity=0.347  Sum_probs=188.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||..+   ..+..+..|...|.+++|+|    ++++|++++.|+.|++||..                    +
T Consensus       364 ~dg~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~----dg~~l~~~~~d~~v~~~~~~--------------------~  416 (577)
T 2ymu_A          364 DDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKLWNRN--------------------G  416 (577)
T ss_dssp             TTSEEEEEETTC---CEEEEEECCSSCEEEEEECT----TSSCEEEEETTSEEEEECTT--------------------C
T ss_pred             CCCEEEEEcCCC---CEEEEecCCCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCC--------------------C
Confidence            378999999765   45677888999999999999    99999999999999999965                    4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|..+|.+++|+|+++  +|++++.|+.|++||...    .....+.++.                      .
T Consensus       417 ~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~v~~w~~~~----~~~~~~~~~~----------------------~  468 (577)
T 2ymu_A          417 QLLQTLTGHSSSVWGVAFSPDDQ--TIASASDDKTVKLWNRNG----QLLQTLTGHS----------------------S  468 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTS----CEEEEEECCS----------------------S
T ss_pred             CEEEEecCCCCCeEEEEECCCCC--EEEEEcCCCEEEEEECCC----CEEEEEcCCC----------------------C
Confidence            55667888999999999999998  999999999999999632    2222222211                      2


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|++++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.||.|++||. +++++..+ 
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-  545 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-  545 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-
Confidence            3789999999999999999999999995 68899999999999999999999999999999999999995 68888887 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|...|++++|+||+++|++++.|++|++||
T Consensus       546 -------~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          546 -------TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence                   78999999999999999999999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-39  Score=257.21  Aligned_cols=225  Identities=14%  Similarity=0.222  Sum_probs=184.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.  ..+..+.+|...|.+++|+|    ++.+|++++.|++|++||+.+                   +
T Consensus       143 ~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p----~~~~l~s~s~d~~v~iwd~~~-------------------~  197 (393)
T 1erj_A          143 EDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFP----SGDKLVSGSGDRTVRIWDLRT-------------------G  197 (393)
T ss_dssp             TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-------------------T
T ss_pred             CCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcC----CCCEEEEecCCCcEEEEECCC-------------------C
Confidence            4899999998876  34677889999999999999    899999999999999999987                   3


Q ss_pred             cccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      +....+. +...+.+++|+| ++.  +|++++.|+.|++||+++..   ....+.....               ....+.
T Consensus       198 ~~~~~~~-~~~~v~~~~~~~~~~~--~l~~~s~d~~v~iwd~~~~~---~~~~~~~~~~---------------~~~~h~  256 (393)
T 1erj_A          198 QCSLTLS-IEDGVTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGF---LVERLDSENE---------------SGTGHK  256 (393)
T ss_dssp             EEEEEEE-CSSCEEEEEECSTTCC--EEEEEETTSCEEEEETTTCC---EEEEEC---------------------CCCS
T ss_pred             eeEEEEE-cCCCcEEEEEECCCCC--EEEEEcCCCcEEEEECCCCc---EEEeeccccc---------------CCCCCC
Confidence            3334443 556799999999 676  99999999999999986532   1111110000               001122


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCC------------cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESS------------RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI  227 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v  227 (279)
                      ..|.+++|+|++++|++++.|+.|++||+++.            .+...+.+|...|.+++|+|++.+|++|+.|+.|++
T Consensus       257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~i  336 (393)
T 1erj_A          257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF  336 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            35899999999999999999999999999753            345677889999999999999999999999999999


Q ss_pred             EeCCCCceEEEecCCccccccCcceeeeEEEEcC------CCCEEEEEcCcceEEeCC
Q 023643          228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA------SESWLVRVRATNYVILFS  279 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~wd  279 (279)
                      ||+++++++..+        .+|...|.+++|++      ++.+|++|+.||+|++|+
T Consensus       337 wd~~~~~~~~~l--------~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          337 WDKKSGNPLLML--------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             EETTTCCEEEEE--------ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             EECCCCeEEEEE--------CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            999999999888        78889999999886      688999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=254.29  Aligned_cols=211  Identities=18%  Similarity=0.290  Sum_probs=175.6

Q ss_pred             cceeeeeeccc-ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE
Q 023643           16 SILKEREILTR-TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY   94 (279)
Q Consensus        16 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~   94 (279)
                      .++..+.+|.. .|++++|+|    ++++||+|+.|++|+||++.+...                ........+|...|.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp----~g~~las~~~D~~i~iw~~~~~~~----------------~~~~~~~~~h~~~v~   65 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNP----AGTLLASCGGDRRIRIWGTEGDSW----------------ICKSVLSEGHQRTVR   65 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECT----TSSCEEEEETTSCEEEEEEETTEE----------------EEEEEECSSCSSCEE
T ss_pred             EEeeeecCCCCCcEEEEEECC----CCCEEEEEcCCCeEEEEEcCCCcc----------------eeeeeeccccCCcEE
Confidence            45677888987 999999999    999999999999999999986310                001122367999999


Q ss_pred             EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643           95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      +++|+|+++  +|++++.|+++++|+++... ......+.++                      ...|.+++|+|++++|
T Consensus        66 ~~~~sp~g~--~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h----------------------~~~v~~v~~sp~~~~l  120 (345)
T 3fm0_A           66 KVAWSPCGN--YLASASFDATTCIWKKNQDD-FECVTTLEGH----------------------ENEVKSVAWAPSGNLL  120 (345)
T ss_dssp             EEEECTTSS--EEEEEETTSCEEEEEECCC--EEEEEEECCC----------------------SSCEEEEEECTTSSEE
T ss_pred             EEEECCCCC--EEEEEECCCcEEEEEccCCC-eEEEEEccCC----------------------CCCceEEEEeCCCCEE
Confidence            999999998  99999999999999976421 1112222221                      1247999999999999


Q ss_pred             EEecCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE--EEecCCccccccC
Q 023643          175 FSAAGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI--KVIDPVKDKQLKG  249 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~  249 (279)
                      ++++.|+.|++||++++   +.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++..  ..+        .+
T Consensus       121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~--------~~  192 (345)
T 3fm0_A          121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL--------EG  192 (345)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE--------CC
T ss_pred             EEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe--------cC
Confidence            99999999999999876   346678889999999999999999999999999999999887543  455        68


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |...|.+++|+|++++|++|+.|++|++||
T Consensus       193 h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          193 HESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            999999999999999999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-39  Score=257.44  Aligned_cols=225  Identities=15%  Similarity=0.256  Sum_probs=178.7

Q ss_pred             CCceeeeccccccccceeeeeec------------------ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCc
Q 023643            2 CGDSTNWDEDAYRKSILKEREIL------------------TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCIS   63 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~   63 (279)
                      |+.+++|++.....  +..+..|                  ...|.+++|+|    ++++|++|+.|++|++||+.+   
T Consensus        84 ~~~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~----dg~~l~s~~~d~~i~iwd~~~---  154 (393)
T 1erj_A           84 NKTTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIEN---  154 (393)
T ss_dssp             BSCEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEECT----TSSEEEEEETTSCEEEEETTT---
T ss_pred             CCcEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEECC----CCCEEEEEcCCCeEEEEECCC---
Confidence            67899999876542  3333322                  22499999999    999999999999999999998   


Q ss_pred             ccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEE
Q 023643           64 KLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLD  143 (279)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  143 (279)
                                      .+.+..+.+|...|.+++|+|++.  +|++++.|++|++||+++..   ....+...       
T Consensus       155 ----------------~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~---~~~~~~~~-------  206 (393)
T 1erj_A          155 ----------------RKIVMILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQ---CSLTLSIE-------  206 (393)
T ss_dssp             ----------------TEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE---EEEEEECS-------
T ss_pred             ----------------CcEEEEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCe---eEEEEEcC-------
Confidence                            566778889999999999999998  99999999999999987532   11111110       


Q ss_pred             eecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEe-------ecCCcceEEEEEcCCCcE
Q 023643          144 LVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVF-------KGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~  215 (279)
                                      ..+.+++|+| ++.+|++++.|+.|++||+++++.+..+       .+|...|.+++|+|++++
T Consensus       207 ----------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~  270 (393)
T 1erj_A          207 ----------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  270 (393)
T ss_dssp             ----------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             ----------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence                            1368999999 8899999999999999999999888776       578999999999999999


Q ss_pred             EEEecCCCeEEEEeCCCCceEEEecC----CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          216 IVTGSEDGTARIWDCKSGKCIKVIDP----VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       216 l~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |++|+.|+.|++||+++.........    .....+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  338 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999986433211110    00112368889999999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.9e-39  Score=252.45  Aligned_cols=220  Identities=16%  Similarity=0.166  Sum_probs=178.5

Q ss_pred             CCCceeeecccccc-----ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643            1 MCGDSTNWDEDAYR-----KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         1 ~dG~v~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      .||+|++||+....     ......+.+|...|.+++|+|    ++.+|++|+.|++|++||+.+               
T Consensus        47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~----~~~~l~s~s~D~~v~lwd~~~---------------  107 (343)
T 2xzm_R           47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ----ENCFAISSSWDKTLRLWDLRT---------------  107 (343)
T ss_dssp             TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS----STTEEEEEETTSEEEEEETTS---------------
T ss_pred             CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCC---------------
Confidence            48999999976432     123557789999999999999    899999999999999999998               


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                          ++.+..+.+|..+|.+++|+|++.  +|++++.|++|++||+...    .......                   .
T Consensus       108 ----~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~----~~~~~~~-------------------~  158 (343)
T 2xzm_R          108 ----GTTYKRFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGE----CKFSSAE-------------------K  158 (343)
T ss_dssp             ----SCEEEEEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSC----EEEECCT-------------------T
T ss_pred             ----CcEEEEEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCC----ceeeeec-------------------c
Confidence                566778889999999999999998  9999999999999998521    1111110                   0


Q ss_pred             CCCCCCceeEEEcCCC----------CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          156 LSPVPENNAIAVDPQG----------GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                      ..+...|.+++|+|++          .++++++.|+.|++|| ...+....+.+|...|.+++|+|++++|++|+.||.|
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL  237 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence            0112247899999876          6899999999999999 4567788899999999999999999999999999999


Q ss_pred             EEEeCCC-CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          226 RIWDCKS-GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       226 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++||++. ......+         .+...|.+++|+|++.+++++ .|+.|++||
T Consensus       238 ~iwd~~~~~~~~~~~---------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~  282 (343)
T 2xzm_R          238 LIWDILNLTYPQREF---------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFN  282 (343)
T ss_dssp             EEEESSCCSSCSEEE---------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEE
T ss_pred             EEEECCCCcccceee---------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEE
Confidence            9999954 3343333         233469999999999887755 577899995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-40  Score=267.53  Aligned_cols=236  Identities=9%  Similarity=0.031  Sum_probs=184.5

Q ss_pred             CCCceeeeccccccccc--eeeeeecccceEEEEECCCCC--CCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            1 MCGDSTNWDEDAYRKSI--LKEREILTRTVFRTVWGPSKD--GSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      .||+|+||++++.....  ...+..|.+.|.+++|+|...  +++.+||+++.||+|++||+..........        
T Consensus       181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--------  252 (524)
T 2j04_B          181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--------  252 (524)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------
T ss_pred             CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------
Confidence            47899999987754221  234567789999999999311  125799999999999999998643210000        


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      ....++...+.+|...|.+++|+|++   .|++|+.||+|++||+++...  ....+.++ .                  
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~--~~~~~~~H-~------------------  308 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEV--PSFYDQVH-D------------------  308 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSS--CSEEEECS-S------------------
T ss_pred             eeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCC--ceEEeecc-c------------------
Confidence            00023445678899999999999863   899999999999999875311  11112221 1                  


Q ss_pred             CCCCCceeE--EEcCCC-CeEEEecCCCeEEEEecCCCcEEEEeecCCc--ceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          157 SPVPENNAI--AVDPQG-GAIFSAAGDSCAYCWDVESSRIKMVFKGHSD--YLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       157 ~~~~~i~~~--~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                         ..|+++  +|+|++ .+|++++.|++|++||+++++++..+.+|..  .|.+++|+|+++.+++++.|++|++||++
T Consensus       309 ---~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~  385 (524)
T 2j04_B          309 ---SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR  385 (524)
T ss_dssp             ---SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred             ---ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence               237888  578887 8999999999999999999887777776653  58899999999999999999999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++++..+        .+|...|++++|+|++++|++|+.||+|++||
T Consensus       386 ~~~~~~~l--------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          386 AAFAVHPL--------VSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             CTTCCEEE--------EECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ccccceee--------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            99888877        68999999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.2e-39  Score=270.96  Aligned_cols=225  Identities=12%  Similarity=0.148  Sum_probs=187.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ++.|++|+++..  .....+.+|...|++++|+|    ++++||+|+.||+|+|||+.+..                 ..
T Consensus        38 ~~~v~l~~~~~~--~~~~~~~~h~~~v~~~~~sp----dg~~lasg~~d~~v~lWd~~~~~-----------------~~   94 (611)
T 1nr0_A           38 GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTT-----------------HI   94 (611)
T ss_dssp             TTEEEEEETTCS--SCCEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEESSSTT-----------------CC
T ss_pred             CCEEEEecCCCc--ccCeEecCCCCceEEEEECC----CCcEEEEEeCCCCEEEeECCCCc-----------------ce
Confidence            457999998765  34667889999999999999    99999999999999999997531                 22


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      ....+.+|.++|.+++|+|+++  +|++++.+    +.|++||...     ....+.++                     
T Consensus        95 ~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd~~~-----~~~~l~gh---------------------  146 (611)
T 1nr0_A           95 LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGT-----SNGNLTGQ---------------------  146 (611)
T ss_dssp             EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCC-----BCBCCCCC---------------------
T ss_pred             eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEeeCCC-----CcceecCC---------------------
Confidence            2346778999999999999998  88888765    4788888432     11122221                     


Q ss_pred             CCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          158 PVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                       ...|++++|+|++. .|++++.|++|++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.+
T Consensus       147 -~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          147 -ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             -SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             -CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence             12479999999987 5999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+.... ....+|...|.+++|+|++++|++++.|++|++||
T Consensus       226 ~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          226 GVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             EECBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeecccc-ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            8773110 00127899999999999999999999999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-38  Score=255.22  Aligned_cols=243  Identities=15%  Similarity=0.193  Sum_probs=190.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV------   74 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------   74 (279)
                      +|++|+|||.++++...+..+..|...|++++|+|    ++++||+|+.||+|+|||+.++.....+.......      
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp----dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~  198 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN  198 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC----CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC
Confidence            38999999999876544445567888999999999    99999999999999999998875443222111110      


Q ss_pred             ------------ceeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643           75 ------------QQLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV  138 (279)
Q Consensus        75 ------------~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  138 (279)
                                  ...+.    ...+..+.+|...+..+.|+|++.  ++++++.|+.+++|+................+ 
T Consensus       199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~--~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-  275 (420)
T 4gga_A          199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-  275 (420)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEESSCCSSCSCCSEEECCC-
T ss_pred             CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC--eeeeeeccccceEEeeccccccceeeeeeccc-
Confidence                        00000    233456678999999999999998  99999999999999987543322211111111 


Q ss_pred             cceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEE--ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643          139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFS--AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  215 (279)
                                          ...|.+++|+|.+. .+++  |+.|+.|++||+.++++...+..| ..+.++.|+|+++.
T Consensus       276 --------------------~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~  334 (420)
T 4gga_A          276 --------------------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE  334 (420)
T ss_dssp             --------------------SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred             --------------------CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence                                12478999999766 4444  467999999999999999988754 56889999999988


Q ss_pred             EEEec--CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          216 IVTGS--EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       216 l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++++  .|+.|+|||+++++++..+        .+|...|++++|+|+|++|+||+.|++|++||
T Consensus       335 lv~~sg~~d~~I~iwd~~~~~~v~~l--------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTMAKVAEL--------KGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            87654  7999999999999999998        78999999999999999999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-38  Score=244.71  Aligned_cols=207  Identities=17%  Similarity=0.263  Sum_probs=171.9

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ..+.+|...|.+++|+|    ++++||+|+.|++|+||++....                 .+.+..+.+|.++|.+++|
T Consensus         3 ~~~~~h~~~V~~~~~s~----~g~~las~s~D~~v~iw~~~~~~-----------------~~~~~~l~gH~~~V~~v~~   61 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDY----YGKRMATCSSDKTIKIFEVEGET-----------------HKLIDTLTGHEGPVWRVDW   61 (297)
T ss_dssp             EECCSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEBCSSC-----------------BCCCEEECCCSSCEEEEEE
T ss_pred             eeccCCcCceEEEEECC----CCCEEEEEeCCCEEEEEecCCCC-----------------cEEEEEEccccCCeEEEEe
Confidence            35678999999999999    99999999999999999997521                 3566788999999999999


Q ss_pred             cCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeE
Q 023643           99 YGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAI  174 (279)
Q Consensus        99 ~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l  174 (279)
                      +|+  +.  +|++++.|++|++||+++... .....+.+                      +...|.+++|+|+  +.+|
T Consensus        62 s~~~~g~--~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~----------------------h~~~v~~v~~~p~~~g~~l  116 (297)
T 2pm7_B           62 AHPKFGT--ILASCSYDGKVMIWKEENGRW-SQIAVHAV----------------------HSASVNSVQWAPHEYGPML  116 (297)
T ss_dssp             CCGGGCS--EEEEEETTTEEEEEEBSSSCB-CCCEEECC----------------------CSSCEEEEEECCGGGCSEE
T ss_pred             cCCCcCC--EEEEEcCCCEEEEEEcCCCce-EEEEEeec----------------------CCCceeEEEeCcCCCCcEE
Confidence            864  55  999999999999999864311 11111111                      1124799999997  7899


Q ss_pred             EEecCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCC-------------CcEEEEecCCCeEEEEeCCCCc----e
Q 023643          175 FSAAGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNS-------------TNQIVTGSEDGTARIWDCKSGK----C  235 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~-------------~~~l~~~~~d~~i~vwd~~~~~----~  235 (279)
                      ++++.|+.|++||++++.  ....+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    .
T Consensus       117 ~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~  196 (297)
T 2pm7_B          117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (297)
T ss_dssp             EEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence            999999999999998763  24567889999999999996             5799999999999999998776    4


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCC---CEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASE---SWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~wd  279 (279)
                      ...+        .+|...|.+++|+|++   .+|++++.|++|++||
T Consensus       197 ~~~l--------~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          197 ESTL--------EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             EEEE--------CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             EEEe--------cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            4455        7899999999999984   8999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-38  Score=244.80  Aligned_cols=207  Identities=23%  Similarity=0.316  Sum_probs=182.6

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      .....+.+|...|++++|+|    ++++|++++.||.|++|++.+                   ++....+.+|...|.+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~----~~~~l~s~~~dg~i~iw~~~~-------------------~~~~~~~~~h~~~v~~   70 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYD-------------------GKFEKTISGHKLGISD   70 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEE
T ss_pred             eeEEEEcccCCcEEEEEECC----CCCEEEEeeCCCeEEEEeCCC-------------------cccchhhccCCCceEE
Confidence            33557789999999999999    899999999999999999987                   5556678889999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      ++|+|+++  +|++++.|+.|++||+++.   .....+.++                      ...|.+++|+|++++|+
T Consensus        71 ~~~~~~~~--~l~s~~~d~~i~vwd~~~~---~~~~~~~~~----------------------~~~v~~~~~~~~~~~l~  123 (312)
T 4ery_A           71 VAWSSDSN--LLVSASDDKTLKIWDVSSG---KCLKTLKGH----------------------SNYVFCCNFNPQSNLIV  123 (312)
T ss_dssp             EEECTTSS--EEEEEETTSEEEEEETTTC---CEEEEEECC----------------------SSCEEEEEECSSSSEEE
T ss_pred             EEEcCCCC--EEEEECCCCEEEEEECCCC---cEEEEEcCC----------------------CCCEEEEEEcCCCCEEE
Confidence            99999998  9999999999999998653   222222221                      11378999999999999


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      +++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+.       ..+...+.
T Consensus       124 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------~~~~~~~~  196 (312)
T 4ery_A          124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-------DDDNPPVS  196 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-------CSSCCCEE
T ss_pred             EEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe-------ccCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999888774       35567899


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .++|+|++++|++++.|+.|++||
T Consensus       197 ~~~~~~~~~~l~~~~~d~~i~iwd  220 (312)
T 4ery_A          197 FVKFSPNGKYILAATLDNTLKLWD  220 (312)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEE
Confidence            999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-38  Score=247.01  Aligned_cols=211  Identities=15%  Similarity=0.213  Sum_probs=180.3

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      .+..++.+|.+.|++++|+|.   ++++|++|+.|++|++|++......              .+.++..+.+|...|.+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~   70 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQK--------------FGVPVRSFKGHSHIVQD   70 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTE--------------EEEEEEEEECCSSCEEE
T ss_pred             EEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCcc--------------ccccceEEeCCcccEEE
Confidence            445678899999999999993   4589999999999999998742110              03456778899999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      ++|+|++.  +|++++.|++|++||+++.   .....+.++.                      ..|.+++|+|++.+|+
T Consensus        71 ~~~s~dg~--~l~s~s~D~~v~~wd~~~~---~~~~~~~~h~----------------------~~v~~~~~~~~~~~l~  123 (319)
T 3frx_A           71 CTLTADGA--YALSASWDKTLRLWDVATG---ETYQRFVGHK----------------------SDVMSVDIDKKASMII  123 (319)
T ss_dssp             EEECTTSS--EEEEEETTSEEEEEETTTT---EEEEEEECCS----------------------SCEEEEEECTTSCEEE
T ss_pred             EEECCCCC--EEEEEeCCCEEEEEECCCC---CeeEEEccCC----------------------CcEEEEEEcCCCCEEE
Confidence            99999998  9999999999999998653   2222333221                      2379999999999999


Q ss_pred             EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCC------CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          176 SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS------TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                      +++.|+.|++||++ ++.+..+.+|...|.+++++|.      +..+++++.|+.|++||+++++....+        .+
T Consensus       124 s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--------~~  194 (319)
T 3frx_A          124 SGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--------IG  194 (319)
T ss_dssp             EEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE--------CC
T ss_pred             EEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee--------cC
Confidence            99999999999996 6678888899999999999985      448999999999999999999888887        68


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |...|.+++|+|++++|++|+.||.|++||
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWN  224 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-39  Score=256.39  Aligned_cols=246  Identities=16%  Similarity=0.257  Sum_probs=188.4

Q ss_pred             eeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc
Q 023643            6 TNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF   85 (279)
Q Consensus         6 ~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (279)
                      ..|+....  .+...+.+|.+.|++++|+|    ++++|++|+.||+|+|||+.+                   ++....
T Consensus        49 ~~~~~~~~--~~~~~l~gH~~~V~~~~~sp----~~~~l~s~s~D~~v~iWd~~~-------------------~~~~~~  103 (380)
T 3iz6_a           49 VSFNPTDL--VCCRTLQGHSGKVYSLDWTP----EKNWIVSASQDGRLIVWNALT-------------------SQKTHA  103 (380)
T ss_dssp             CCCCCCCC--EEEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEETTT-------------------TEEEEE
T ss_pred             ccccccee--EEeecccccccEEEEEEEcC----CCCEEEEEeCCCeEEEEECCC-------------------CccceE
Confidence            34554433  44678899999999999999    899999999999999999988                   566677


Q ss_pred             ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC----cceeeeccC-----------------------cc
Q 023643           86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES----KVPINLQGN-----------------------HV  138 (279)
Q Consensus        86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~-----------------------~~  138 (279)
                      +..|...|.+++|+|+++  +|++++.|+.+++|++......    .....+.++                       ..
T Consensus       104 ~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~  181 (380)
T 3iz6_a          104 IKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT  181 (380)
T ss_dssp             EECCCTTCCCCEECTTSS--EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred             EecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence            888999999999999998  9999999999999998642110    011111111                       01


Q ss_pred             cceEEeecCCCCCcc---ccCCCCCCceeEEEcC-CCCeEEEecCCCeEEEEecC-CCcEEEEeecCCcceEEEEEcCCC
Q 023643          139 KPVLDLVNHQHKGPW---GALSPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVE-SSRIKMVFKGHSDYLHCIVARNST  213 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~  213 (279)
                      ..++++........+   ....+...|.+++|++ ++.+|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++
T Consensus       182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~  261 (380)
T 3iz6_a          182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG  261 (380)
T ss_dssp             EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred             EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence            111111111000000   0023456789999987 78899999999999999998 457888999999999999999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          214 NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       214 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++|++|+.||+|++||+++++.+..+..+.. ....+...|++++|+|+|++|++|+.||.|++||
T Consensus       262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPD-RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             SEEEEECSSSCEEEEETTTTEEEEEECCCCS-SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CeEEEEcCCCeEEEEECCCCcEEEEeccccc-ccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            9999999999999999999999888754321 0012334589999999999999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=243.74  Aligned_cols=243  Identities=14%  Similarity=0.174  Sum_probs=188.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV------   74 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------   74 (279)
                      +|++|+|||+++++.........|...|++++|+|    ++++||+|+.||+|++|++.+++....+.......      
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~----~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~  118 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN  118 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC----CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC
Confidence            48999999998875433334567888999999999    99999999999999999999876544322111110      


Q ss_pred             ------------ceeee----ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc
Q 023643           75 ------------QQLLG----IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV  138 (279)
Q Consensus        75 ------------~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  138 (279)
                                  .....    ...+..+.+|...+..+.+.+++.  +|++++.|+.|++||+++.............+ 
T Consensus       119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-  195 (318)
T 4ggc_A          119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-  195 (318)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEESSCBTTBSCCSEEECCC-
T ss_pred             CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC--EEEEEecCcceeEEECCCCcccccceeeeccc-
Confidence                        00000    233456678999999999999998  99999999999999987643322222111111 


Q ss_pred             cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE---EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643          139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI---FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  215 (279)
                                          ...|.++.++|++..+   ++++.++.|++||.+......... +...+..+.|+|+++.
T Consensus       196 --------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  254 (318)
T 4ggc_A          196 --------------------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE  254 (318)
T ss_dssp             --------------------CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             --------------------CCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence                                1236888999877643   467788999999999887776655 6778999999999888


Q ss_pred             EEEe--cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          216 IVTG--SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       216 l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++  +.|+.|++||+++++++..+        .+|...|++++|+|++++|++|+.||+|++||
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~~~~~~l--------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTMAKVAEL--------KGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            7664  48999999999999999998        78999999999999999999999999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-38  Score=246.23  Aligned_cols=220  Identities=21%  Similarity=0.296  Sum_probs=187.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++..  ..+..+..|...|.+++|+|    ++++|++|+.||.|++||+.+                   +
T Consensus        85 ~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~-------------------~  139 (312)
T 4ery_A           85 DDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKT-------------------G  139 (312)
T ss_dssp             TTSEEEEEETTTC--CEEEEEECCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTT-------------------C
T ss_pred             CCCEEEEEECCCC--cEEEEEcCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCC-------------------C
Confidence            4899999998876  34677889999999999999    899999999999999999987                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+..|..+|.+++|+|++.  +|++++.||.|++||+++..   ....+...+.                     .
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~---------------------~  193 (312)
T 4ery_A          140 KCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQ---CLKTLIDDDN---------------------P  193 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCC---EEEEECCSSC---------------------C
T ss_pred             EEEEEecCCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCc---eeeEEeccCC---------------------C
Confidence            66677888999999999999998  99999999999999986532   1222211111                     1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEE--EEEc-CCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC--IVAR-NSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~--i~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      .+.+++|+|++++|++++.|+.|++||+++++.+..+.+|.....+  ..++ +++.+|++|+.||.|++||+++++.+.
T Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            3688999999999999999999999999999999999888765433  2333 578999999999999999999999998


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEc--CcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVR--ATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd  279 (279)
                      .+        .+|...|.+++|+|++++|++++  .|+.|++|+
T Consensus       274 ~~--------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          274 KL--------QGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             EE--------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             hh--------hccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            88        68889999999999999999986  699999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-39  Score=258.33  Aligned_cols=226  Identities=12%  Similarity=0.067  Sum_probs=180.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.....+..+.+|...|.+++|+|    ++++|++++.||+|++||+.+...                .
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~d~~v~vwd~~~~~~----------------~   90 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP----KSNRIVTCSQDRNAYVYEKRPDGT----------------W   90 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT----TTCCEEEEETTSSEEEC------C----------------C
T ss_pred             CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC----CCCEEEEEeCCCeEEEEEcCCCCc----------------e
Confidence            48999999998764445777889999999999999    899999999999999999987320                1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .+...+.+|...|.+++|+|+++  +|++++.|+.|++||++..........+...+                     ..
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h---------------------~~  147 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPL---------------------RS  147 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSC---------------------CS
T ss_pred             eeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeeccc---------------------CC
Confidence            24556678999999999999998  99999999999999987543222223332211                     12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecC------------------CCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVE------------------SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      .|.+++|+|++++|++++.|+.|++||++                  .++++..+ +|...|.+++|+|++++|++++.|
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence            47999999999999999999999999985                  35566777 899999999999999999999999


Q ss_pred             CeEEEEeCCCCce----EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          223 GTARIWDCKSGKC----IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       223 ~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      |.|++||+++++.    +..+        .+|...|.+++|+|++++|++|+.++.+.+|
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITV--------KLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCE--------ECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             CcEEEEECCCCCCcceeeEee--------cCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence            9999999999887    5555        6888899999999999999999888777544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=246.36  Aligned_cols=209  Identities=17%  Similarity=0.255  Sum_probs=170.6

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cC-CccCe
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HG-HDGPA   93 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v   93 (279)
                      ..+..+.+|.++|++++|+|    +  +||+|+.|++|++|++....                 ......+ .+ |.++|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~----~--~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v   61 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQ----G--ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAI   61 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEET----T--EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCE
T ss_pred             ccceeeccCCCceeeeccCC----C--EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCE
Confidence            34677889999999999999    5  99999999999999998631                 1222333 34 99999


Q ss_pred             EEEEecCCCCceEEEEeeCCCcEEEeecCCCcc----CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643           94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE----SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP  169 (279)
Q Consensus        94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  169 (279)
                      .+++|+|+++  +|++++.|++|++|+++....    ......+.+                      +...|.+++|+|
T Consensus        62 ~~v~~sp~~~--~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~----------------------h~~~V~~v~~sp  117 (330)
T 2hes_X           62 RSVAWRPHTS--LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG----------------------HENEVKGVAWSN  117 (330)
T ss_dssp             EEEEECTTSS--EEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------------CEEEEEECT
T ss_pred             EEEEECCCCC--EEEEEeCCCcEEEEEcccCcCccccceeEEEEcC----------------------CCCcEEEEEECC
Confidence            9999999998  999999999999999853211    011111111                      222489999999


Q ss_pred             CCCeEEEecCCCeEEEEecCC----CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC--ceEEEecCCc
Q 023643          170 QGGAIFSAAGDSCAYCWDVES----SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG--KCIKVIDPVK  243 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~  243 (279)
                      ++++|++++.|+.|++||++.    .+++..+.+|...|.+++|+|++.+|++++.|++|++||.+++  +++..+    
T Consensus       118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~----  193 (330)
T 2hes_X          118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL----  193 (330)
T ss_dssp             TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE----
T ss_pred             CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc----
Confidence            999999999999999999943    2567788999999999999999999999999999999998876  566666    


Q ss_pred             cccccCcceeeeEEEEcCC--CCEEEEEcCcceEEeCC
Q 023643          244 DKQLKGVISCVSCITLDAS--ESWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~wd  279 (279)
                          .+|...|.+++|+|+  +.+|++|+.|++|++||
T Consensus       194 ----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          194 ----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK  227 (330)
T ss_dssp             ----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred             ----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence                789999999999998  77899999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-37  Score=243.72  Aligned_cols=255  Identities=18%  Similarity=0.206  Sum_probs=186.4

Q ss_pred             eeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc
Q 023643            6 TNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF   85 (279)
Q Consensus         6 ~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (279)
                      .++.....+..+..++++|.+.|++++|+|.   ++++||+|+.||+|+|||+.+.....              ..+...
T Consensus        19 ~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~---~~~~l~S~s~D~~i~vWd~~~~~~~~--------------~~~~~~   81 (340)
T 4aow_A           19 YFQSMMTEQMTLRGTLKGHNGWVTQIATTPQ---FPDMILSASRDKTIIMWKLTRDETNY--------------GIPQRA   81 (340)
T ss_dssp             -------CEEEEEEEECCCSSCEEEEEECTT---CTTEEEEEETTSCEEEEEECCSSSCS--------------EEEEEE
T ss_pred             EEEEccCCceEEEEEECCccCCEEEEEEeCC---CCCEEEEEcCCCeEEEEECCCCCccc--------------ceeeEE
Confidence            3344444444455678999999999999993   47899999999999999998643211              334567


Q ss_pred             ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeecc--------CcccceEEeecCCC--------
Q 023643           86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQG--------NHVKPVLDLVNHQH--------  149 (279)
Q Consensus        86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--------  149 (279)
                      +.+|...|.+++|+|+++  +|++++.|+.|++|+...............        .....+........        
T Consensus        82 l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~  159 (340)
T 4aow_A           82 LRGHSHFVSDVVISSDGQ--FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG  159 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             EeCCCCCEEEEEECCCCC--EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence            889999999999999998  999999999999999865322111100000        00000100000000        


Q ss_pred             --CCccccCCCCCCceeEEEcCCC--CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          150 --KGPWGALSPVPENNAIAVDPQG--GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       150 --~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                        ........+...+.+++|++++  .++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.||.|
T Consensus       160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i  239 (340)
T 4aow_A          160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA  239 (340)
T ss_dssp             CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence              0011123345678899998865  467889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEecCCcc-----------------------------------------ccccCcceeeeEEEEcCCCC
Q 023643          226 RIWDCKSGKCIKVIDPVKD-----------------------------------------KQLKGVISCVSCITLDASES  264 (279)
Q Consensus       226 ~vwd~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~  264 (279)
                      ++||+++.+.+..+..+..                                         ....+|...|++++|+|+++
T Consensus       240 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  319 (340)
T 4aow_A          240 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ  319 (340)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred             EEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence            9999998877766543321                                         01235778899999999999


Q ss_pred             EEEEEcCcceEEeCC
Q 023643          265 WLVRVRATNYVILFS  279 (279)
Q Consensus       265 ~l~~~~~d~~i~~wd  279 (279)
                      +|++|+.||.|++||
T Consensus       320 ~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          320 TLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCEEEEEe
Confidence            999999999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.9e-38  Score=248.51  Aligned_cols=221  Identities=8%  Similarity=0.017  Sum_probs=171.6

Q ss_pred             CCceeeecccccccc--cee-----eeeecccceEEEEECCCCCCCCCEEEE--ecCCCcEEEEeCCCCCcccccccCCc
Q 023643            2 CGDSTNWDEDAYRKS--ILK-----EREILTRTVFRTVWGPSKDGSPDTIVI--ASSDGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         2 dG~v~iw~~~~~~~~--~~~-----~~~~~~~~v~~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      |+.+|+|+++.....  ...     ....+...+.+++|+|    ||+++|+  ++.|++|+|||+.+            
T Consensus       103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp----Dg~~la~as~~~d~~i~iwd~~~------------  166 (365)
T 4h5i_A          103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR----EGTVAAIASSKVPAIMRIIDPSD------------  166 (365)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT----TSSCEEEEESCSSCEEEEEETTT------------
T ss_pred             CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC----CCCEEEEEECCCCCEEEEeECCC------------
Confidence            678999987654311  111     1123345688999999    9998765  45789999999998            


Q ss_pred             ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           73 KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                             ++++..+. |.+.|.+++|+|+++  +|++++.+ .+++|+..+..  .........+.              
T Consensus       167 -------~~~~~~~~-~~~~V~~v~fspdg~--~l~s~s~~-~~~~~~~~~~~--~~~~~~~~~~~--------------  219 (365)
T 4h5i_A          167 -------LTEKFEIE-TRGEVKDLHFSTDGK--VVAYITGS-SLEVISTVTGS--CIARKTDFDKN--------------  219 (365)
T ss_dssp             -------TEEEEEEE-CSSCCCEEEECTTSS--EEEEECSS-CEEEEETTTCC--EEEEECCCCTT--------------
T ss_pred             -------CcEEEEeC-CCCceEEEEEccCCc--eEEeccce-eEEEEEeccCc--ceeeeecCCCC--------------
Confidence                   45555554 778899999999998  99998855 45666644321  11111111111              


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCC----eEEEEecCCCcE----EEEeecCCcceEEEEEcCCCcEEEEecCCCe
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDS----CAYCWDVESSRI----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  224 (279)
                             ..|.+++|+|++..+++++.|+    .+++||+.....    ...+.+|...|++++|+|+|++|++|+.|++
T Consensus       220 -------~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          220 -------WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             -------EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             -------CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence                   1378999999999999998876    688999876643    3467789999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |+|||+++++++..+.       .+|...|++++|+|||++||+||.|++|+|||
T Consensus       293 V~iwd~~~~~~~~~~~-------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          293 IALVKLKDLSMSKIFK-------QAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             EEEEETTTTEEEEEET-------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEEECCCCcEEEEec-------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999999998863       68999999999999999999999999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=247.04  Aligned_cols=227  Identities=16%  Similarity=0.226  Sum_probs=187.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCC--CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGS--PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|++||++......+..+..|...|++++|+|    +  +++|++++.||.|++||+.+..                
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~v~iwd~~~~~----------------   90 (379)
T 3jrp_A           31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH----PKFGTILASCSYDGKVLIWKEENGR----------------   90 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC----GGGCSEEEEEETTSCEEEEEEETTE----------------
T ss_pred             CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC----CCCCCEEEEeccCCEEEEEEcCCCc----------------
Confidence            48999999998555466778889999999999997    5  8999999999999999998731                


Q ss_pred             eccccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                       ...+..+..|...|.+++|+|+  +.  +|++++.|+.|++||++..... ....+..                     
T Consensus        91 -~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~---------------------  145 (379)
T 3jrp_A           91 -WSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTT-SPIIIDA---------------------  145 (379)
T ss_dssp             -EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCC-CEEEEEC---------------------
T ss_pred             -eeEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCce-eeEEecC---------------------
Confidence             1255677789999999999999  77  9999999999999998754221 1111111                     


Q ss_pred             CCCCCceeEEEcC-------------CCCeEEEecCCCeEEEEecCCCc----EEEEeecCCcceEEEEEcCC---CcEE
Q 023643          157 SPVPENNAIAVDP-------------QGGAIFSAAGDSCAYCWDVESSR----IKMVFKGHSDYLHCIVARNS---TNQI  216 (279)
Q Consensus       157 ~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~---~~~l  216 (279)
                       +...|.+++|+|             ++.++++++.|+.|++||+++++    ....+.+|...|.+++|+|+   +++|
T Consensus       146 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          146 -HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             -CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             -CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence             112378999999             68999999999999999998764    55677889999999999999   8999


Q ss_pred             EEecCCCeEEEEeCCCCce---EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGKC---IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++.||.|++||+++++.   ...+..      ..|...|++++|+|++++|++++.||.|++|+
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKE------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSS------SCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeecc------ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            9999999999999998642   222211      45788999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.1e-38  Score=252.63  Aligned_cols=241  Identities=15%  Similarity=0.135  Sum_probs=192.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++...  ....+..|...|.+++|+|    ++++|++|+.||+|++||+.+                   +
T Consensus       117 ~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~-------------------~  171 (420)
T 3vl1_A          117 TEGDIKVLDSNFNL--QREIDQAHVSEITKLKFFP----SGEALISSSQDMQLKIWSVKD-------------------G  171 (420)
T ss_dssp             TTSCEEEECTTSCE--EEEETTSSSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-------------------C
T ss_pred             CCCCEEEEeCCCcc--eeeecccccCccEEEEECC----CCCEEEEEeCCCeEEEEeCCC-------------------C
Confidence            48999999988763  3556678999999999999    899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeecc--CcccceEEeecCCCCCccccCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQG--NHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      +.+..+.+|...|.+++|+|++.  +|++++.|+.|++||+++..   ....+..  .+...+..+.............+
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  246 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRGR--NVLSASLDGTIRLWECGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEIS  246 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEETTTTE---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred             cCceEEcCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEeECCCCc---eeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence            66778889999999999999998  99999999999999987542   2222222  22333333322111111111223


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCce-
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKC-  235 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~-  235 (279)
                      ...+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|+.||.|++||+++++. 
T Consensus       247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~  326 (420)
T 3vl1_A          247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP  326 (420)
T ss_dssp             CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred             cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence            3457889999999999999999999999999998877765 4788999999999988 999999999999999998754 


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +..+.       ..|...|.++.+ +++.+|++++.|+.|++||
T Consensus       327 ~~~~~-------~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          327 VGEFL-------INEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             SEEEE-------ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             hhhhh-------ccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence            56663       236677888855 5788999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-38  Score=267.60  Aligned_cols=222  Identities=16%  Similarity=0.258  Sum_probs=186.0

Q ss_pred             CCCceeeeccccccc---cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .||+|++|++.....   .....+.+|...|.+++|+|    ++++|++|+.||+|+|||+.+                 
T Consensus       403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~g~~l~sgs~Dg~v~vwd~~~-----------------  461 (694)
T 3dm0_A          403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS----DGQFALSGSWDGELRLWDLAA-----------------  461 (694)
T ss_dssp             TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred             CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC----CCCEEEEEeCCCcEEEEECCC-----------------
Confidence            489999999875432   23456789999999999999    999999999999999999998                 


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                        +.....+.+|...|.+++|+|++.  +|++++.|++|++||+...    ........                  ...
T Consensus       462 --~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~----~~~~~~~~------------------~~~  515 (694)
T 3dm0_A          462 --GVSTRRFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGE----CKYTISEG------------------GEG  515 (694)
T ss_dssp             --TEEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSC----EEEEECSS------------------TTS
T ss_pred             --CcceeEEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCC----cceeeccC------------------CCC
Confidence              566678889999999999999998  9999999999999997431    11111000                  011


Q ss_pred             CCCCceeEEEcCCC--CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          158 PVPENNAIAVDPQG--GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       158 ~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      +...|.+++|+|++  ..+++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.||.|++||+++++.
T Consensus       516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence            22248999999986  5799999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +..+.         +...|.+++|+|++.+|++++ ++.|++||
T Consensus       596 ~~~~~---------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd  629 (694)
T 3dm0_A          596 LYSLE---------ANSVIHALCFSPNRYWLCAAT-EHGIKIWD  629 (694)
T ss_dssp             EECCB---------CSSCEEEEEECSSSSEEEEEE-TTEEEEEE
T ss_pred             EEEec---------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEE
Confidence            87762         335799999999998888775 45699996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.1e-37  Score=240.98  Aligned_cols=212  Identities=16%  Similarity=0.191  Sum_probs=173.8

Q ss_pred             cceeeeeecccceEEEEE-----CCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc
Q 023643           16 SILKEREILTRTVFRTVW-----GPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD   90 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~   90 (279)
                      .....+.+|...|++++|     ++   .++.+|++|+.|++|++||+.........            +.+...+.+|.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~---~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~   76 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKEN---EDSPVLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHN   76 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTT---CCCCEEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCS
T ss_pred             eeeeeeccchhhhhheeeEEEeecC---CCCCEEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCC
Confidence            345678899999999999     54   27899999999999999999763211100            34456788999


Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ..|.+++|+|++.  ++++++.|++|++||+++.   .....+.++                      ...|.+++|+|+
T Consensus        77 ~~V~~~~~~~~~~--~l~s~s~D~~v~lwd~~~~---~~~~~~~~h----------------------~~~v~~v~~sp~  129 (343)
T 2xzm_R           77 HFVSDLALSQENC--FAISSSWDKTLRLWDLRTG---TTYKRFVGH----------------------QSEVYSVAFSPD  129 (343)
T ss_dssp             SCEEEEEECSSTT--EEEEEETTSEEEEEETTSS---CEEEEEECC----------------------CSCEEEEEECSS
T ss_pred             CceEEEEECCCCC--EEEEEcCCCcEEEEECCCC---cEEEEEcCC----------------------CCcEEEEEECCC
Confidence            9999999999998  9999999999999998753   222223222                      124799999999


Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCCC----------cEEEEecCCCeEEEEeCCCCceEE
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNST----------NQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~----------~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      +++|++++.|+.|++||+.. .......   .|...|.+++|+|++          .+|++++.|+.|++|| ...+...
T Consensus       130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~  207 (343)
T 2xzm_R          130 NRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRY  207 (343)
T ss_dssp             TTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEE
T ss_pred             CCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeE
Confidence            99999999999999999984 3433333   688999999999986          7999999999999999 4566666


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+        .+|...|.+++|+|++++|++|+.||.|++||
T Consensus       208 ~~--------~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          208 TF--------KAHESNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             EE--------ECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             EE--------cCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence            66        68889999999999999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-38  Score=256.76  Aligned_cols=211  Identities=13%  Similarity=0.133  Sum_probs=171.5

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      .....+|...|++|+|+|.   ++++||+|+.||+|+|||+.+..                 ......+.+|.++|++|+
T Consensus       112 ~~~~~~~~~~V~~l~~~P~---~~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~  171 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPT---HPSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLK  171 (435)
T ss_dssp             CCEEEECSSCEEEEEECSS---CTTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEE
T ss_pred             cccCCCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEE
Confidence            3456678899999999994   67899999999999999998742                 222345568999999999


Q ss_pred             ecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           98 FYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        98 ~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      |+| ++.  +|++++.||+|++||++..    ....+...+..                   ...+.+++|+|++.+|++
T Consensus       172 f~p~~~~--~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~  226 (435)
T 4e54_B          172 FNPLNTN--QFYASSMEGTTRLQDFKGN----ILRVFASSDTI-------------------NIWFCSLDVSASSRMVVT  226 (435)
T ss_dssp             ECSSCTT--EEEEECSSSCEEEEETTSC----EEEEEECCSSC-------------------SCCCCCEEEETTTTEEEE
T ss_pred             EeCCCCC--EEEEEeCCCEEEEeeccCC----ceeEEeccCCC-------------------CccEEEEEECCCCCEEEE
Confidence            998 455  9999999999999998632    11111111111                   113678999999999999


Q ss_pred             ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      |+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+...     .+|...|+
T Consensus       227 g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~-----~~h~~~v~  300 (435)
T 4e54_B          227 GDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS-----LPHRHPVN  300 (435)
T ss_dssp             ECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC-----CBCSSCEE
T ss_pred             EeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe-----eecccccc
Confidence            9999999999986 566778889999999999999865 7889999999999999987655444221     57889999


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++|+|++.+|++++.||.|++||
T Consensus       301 ~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          301 AACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             ECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             ceeECCCCCeeEEEcCCCEEEEEE
Confidence            999999999999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.4e-38  Score=247.05  Aligned_cols=226  Identities=10%  Similarity=0.102  Sum_probs=190.8

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.....+..+..|...|.+++|+|    ++++|++++.||.|++||+.+..                 .
T Consensus        28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~-----------------~   86 (372)
T 1k8k_C           28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGRT-----------------W   86 (372)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET----TTTEEEEEETTSCEEEEEEETTE-----------------E
T ss_pred             CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC----CCCEEEEEcCCCeEEEEECCCCe-----------------e
Confidence            37999999998875446778889999999999999    89999999999999999998732                 1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+..|...|.+++|+|+++  +|++++.|+.|++||++..............+                     ..
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---------------------~~  143 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPI---------------------RS  143 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTC---------------------CS
T ss_pred             eeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeeccc---------------------CC
Confidence            12233466899999999999998  99999999999999987542211111111111                     12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEec------------------CCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDV------------------ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      .|.+++|+|++++|++++.|+.|++||+                  ..++.+..+..|...|.+++|+|++++|++++.|
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            4799999999999999999999999995                  4678899999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.|++||+++++++..+        ..|...|.+++|+|++.+|++| .|+.|++|+
T Consensus       224 ~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~  271 (372)
T 1k8k_C          224 STVCLADADKKMAVATL--------ASETLPLLAVTFITESSLVAAG-HDCFPVLFT  271 (372)
T ss_dssp             TEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             CEEEEEECCCCceeEEE--------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence            99999999999999988        6778899999999999988888 899999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.2e-37  Score=239.53  Aligned_cols=218  Identities=14%  Similarity=0.154  Sum_probs=188.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++.........+..|...|.+++|+|    ++++|++++.||.|++||+.+                   .
T Consensus       117 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~v~~~d~~~-------------------~  173 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISP----DSKVCFSCCSDGNIAVWDLHN-------------------Q  173 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------T
T ss_pred             CCCcEEEEECCCCCcceeeecccCCCceEEEEECC----CCCEEEEEeCCCcEEEEeCCC-------------------C
Confidence            37999999998876555677888999999999999    899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+..|...|.+++|+|+++  +|++++.||.|++||++...   .......                       ..
T Consensus       174 ~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~---~~~~~~~-----------------------~~  225 (337)
T 1gxr_A          174 TLVRQFQGHTDGASCIDISNDGT--KLWTGGLDNTVRSWDLREGR---QLQQHDF-----------------------TS  225 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE---EEEEEEC-----------------------SS
T ss_pred             ceeeeeecccCceEEEEECCCCC--EEEEEecCCcEEEEECCCCc---eEeeecC-----------------------CC
Confidence            66677888999999999999998  99999999999999987532   1111110                       11


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++|+|++++|++++.||.|++||+++++.+... 
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-  303 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-  303 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-
Confidence            3789999999999999999999999999987754 56779999999999999999999999999999999999887554 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .|...|.+++|+|++++|++++.||.|++|+
T Consensus       304 --------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          304 --------KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             --------ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             --------cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence                    5677899999999999999999999999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.4e-37  Score=241.39  Aligned_cols=245  Identities=14%  Similarity=0.109  Sum_probs=190.0

Q ss_pred             CCCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|++||++....  .....+..|...|.+++|+|.  .++++|++++.||.|++||+.+........          
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~----------   98 (351)
T 3f3f_A           31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP--EYGRIIASASYDKTVKLWEEDPDQEECSGR----------   98 (351)
T ss_dssp             TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCG--GGCSEEEEEETTSCEEEEEECTTSCTTSSC----------
T ss_pred             CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCC--CCCCEEEEEcCCCeEEEEecCCCccccccc----------
Confidence            489999999875432  346677889999999999991  028999999999999999998743211000          


Q ss_pred             eccccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      ..+++..+..|...|.+++|+|+  +.  +|++++.||.|++||+++............     .       ........
T Consensus        99 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~-------~~~~~~~~  164 (351)
T 3f3f_A           99 RWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWTLTSE-----M-------KVLSIPPA  164 (351)
T ss_dssp             SEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCEEEEE-----E-------ESCSCCCS
T ss_pred             CcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccccccc-----c-------cccccccC
Confidence            01445677789999999999999  77  999999999999999876533221111000     0       00011111


Q ss_pred             CCCCCceeEEEcCC---CCeEEEecCCCeEEEEecCCCcE--EEEeecCCcceEEEEEcCCC----cEEEEecCCCeEEE
Q 023643          157 SPVPENNAIAVDPQ---GGAIFSAAGDSCAYCWDVESSRI--KMVFKGHSDYLHCIVARNST----NQIVTGSEDGTARI  227 (279)
Q Consensus       157 ~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~----~~l~~~~~d~~i~v  227 (279)
                      .+...+.+++|+|+   +..+++++.++.+.+|+...++.  +..+.+|...|++++|+|++    ++|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            23345899999997   88999999999998888887765  67788899999999999998    89999999999999


Q ss_pred             EeCCCC----------------------------------------------ceEEEecCCccccccCcceeeeEEEEcC
Q 023643          228 WDCKSG----------------------------------------------KCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       228 wd~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      ||++.+                                              +.+..+        .+|...|++++|+|
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH--------DDHNGEVWSVSWNL  316 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEE--------CTTSSCEEEEEECS
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE--------ecccccEEEEEEcC
Confidence            999875                                              333333        67889999999999


Q ss_pred             CCCEEEEEcCcceEEeCC
Q 023643          262 SESWLVRVRATNYVILFS  279 (279)
Q Consensus       262 ~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++|++|+.||.|++||
T Consensus       317 ~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          317 TGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             SSCCEEEEETTSCEEEEE
T ss_pred             CCCEEEEecCCCcEEEEe
Confidence            999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.8e-37  Score=257.09  Aligned_cols=214  Identities=19%  Similarity=0.320  Sum_probs=186.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||.++.   .+..+..|...|.+++|+|    ++++|++++.||.|++|+..                    +
T Consensus       323 ~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~dg~v~~~~~~--------------------~  375 (577)
T 2ymu_A          323 DDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSP----DGQTIASASDDKTVKLWNRN--------------------G  375 (577)
T ss_dssp             TTSCEEEEETTSC---EEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETT--------------------C
T ss_pred             CCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECC----CCCEEEEEeCCCEEEEEcCC--------------------C
Confidence            3799999998763   3566778999999999999    99999999999999999965                    4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|..+|.+++|+|+++  +|++++.|+.|++||...    +....+.++                      ..
T Consensus       376 ~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~d~~v~~~~~~~----~~~~~~~~~----------------------~~  427 (577)
T 2ymu_A          376 QLLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG----QLLQTLTGH----------------------SS  427 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTC----CEEEEEECC----------------------SS
T ss_pred             CEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCEEEEEeCCC----CEEEEecCC----------------------CC
Confidence            55667788999999999999998  999999999999999531    222222221                      12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++++..+ 
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-  504 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-  504 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-
Confidence            3789999999999999999999999996 57888899999999999999999999999999999999994 68888888 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|...|++++|+|++++|++++.||.|++||
T Consensus       505 -------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          505 -------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             -------ECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence                   68889999999999999999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-37  Score=244.23  Aligned_cols=223  Identities=14%  Similarity=0.177  Sum_probs=172.8

Q ss_pred             CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ||.|++|+......  ........|...|.+++|+|    ++. +++++.||+|+|||+.++....              
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~----d~~-~l~~s~dg~v~lWd~~~~~~~~--------------  129 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS----EKG-ILVASDSGAVELWEILEKESLL--------------  129 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET----TTE-EEEEETTSCEEEC--------C--------------
T ss_pred             cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC----CCC-EEEEECCCEEEEeeccccceeE--------------
Confidence            67888888654431  23345567889999999999    665 5567889999999998743211              


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                       .......+|.+.|.+++|+|+++  +|++++.|+.|++||+++.   .....+.++.                      
T Consensus       130 -~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~---~~~~~~~~h~----------------------  181 (357)
T 4g56_B          130 -VNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQK---AVLKSYNAHS----------------------  181 (357)
T ss_dssp             -CCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTT---EEEEEECCCS----------------------
T ss_pred             -EEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEcCCC----------------------
Confidence             11123347999999999999998  9999999999999998643   2233333221                      


Q ss_pred             CCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCce
Q 023643          160 PENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       160 ~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      ..|++++|+|++. ++++++.|+.|++||+++++++..+.  .+...+.+++|+|+ +.+|++|+.|+.|++||++++++
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence            2379999999875 78899999999999999988776554  46778999999997 57899999999999999999999


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      +..+        .+|...|++++|+|++ ++|++|+.|++|++||
T Consensus       262 ~~~~--------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd  298 (357)
T 4g56_B          262 AQTS--------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLD  298 (357)
T ss_dssp             CEEE--------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             eEEE--------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence            9888        6888899999999987 6799999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-37  Score=246.78  Aligned_cols=257  Identities=15%  Similarity=0.107  Sum_probs=194.8

Q ss_pred             CCCceeeecccccc----ccceeeeeecccceEEEEECCCCCCC----C---CEEEEecCCCcEEEEeCCCCCccccccc
Q 023643            1 MCGDSTNWDEDAYR----KSILKEREILTRTVFRTVWGPSKDGS----P---DTIVIASSDGSITSYSIPSCISKLPLGL   69 (279)
Q Consensus         1 ~dG~v~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~----~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~   69 (279)
                      .||.|++|+++...    ...+..+..|...|.+++|+|    +    +   .+|++++.||.|++|++.+.....    
T Consensus        34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~----  105 (397)
T 1sq9_A           34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ----AIERDAFELCLVATTSFSGDLLFYRITREDETK----  105 (397)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE----EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC----
T ss_pred             CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec----ccccCCccccEEEEEcCCCCEEEEEccCCcccc----
Confidence            48999999988765    335777889999999999999    8    8   999999999999999998732100    


Q ss_pred             CCcccceeeeccccccccCC-----ccCeEEEEec----CCCCceE-EEEeeCCCcEEEeecCC------CccCcce--e
Q 023643           70 SNSKVQQLLGIEPDGFLHGH-----DGPAYDVKFY----GGNEDAL-LLSCGDDGRICGWRWKE------FTESKVP--I  131 (279)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~~~-l~s~~~dg~i~iw~~~~------~~~~~~~--~  131 (279)
                                ......+..|     ...|.+++|+    |++.  + |++++.||.|++||++.      .......  .
T Consensus       106 ----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  173 (397)
T 1sq9_A          106 ----------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  173 (397)
T ss_dssp             ----------CEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             ----------cccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence                      0015566677     5899999999    9888  8 99999999999999976      3222200  0


Q ss_pred             eec------cCcccceEEee-------------------cCCCCCccc-cCC---C---CCCceeEEEcCCCCeEEEecC
Q 023643          132 NLQ------GNHVKPVLDLV-------------------NHQHKGPWG-ALS---P---VPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       132 ~~~------~~~~~~~~~~~-------------------~~~~~~~~~-~~~---~---~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      .+.      ..+...+..+.                   ......... ...   +   ...|.+++|+|++.+|++++.
T Consensus       174 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~  253 (397)
T 1sq9_A          174 ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD  253 (397)
T ss_dssp             EEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             eeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence            110      00111111110                   000011111 122   4   678999999999999999999


Q ss_pred             C---CeEEEEecCCCcEEEEeec-------------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCc
Q 023643          180 D---SCAYCWDVESSRIKMVFKG-------------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVK  243 (279)
Q Consensus       180 d---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  243 (279)
                      |   +.|++||+++++.+..+..             |...|.+++|+|++++|++++.||.|++||+++++.+..+....
T Consensus       254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  333 (397)
T 1sq9_A          254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC  333 (397)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence            9   9999999999999999998             99999999999999999999999999999999999999885110


Q ss_pred             cccccCc---------------ceeeeEEEEcCCC----------CEEEEEcCcceEEeCC
Q 023643          244 DKQLKGV---------------ISCVSCITLDASE----------SWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ~~~~~~~---------------~~~v~~~~~~~~~----------~~l~~~~~d~~i~~wd  279 (279)
                      ..  .+|               ...|.+++|+|++          ++|++++.||.|++||
T Consensus       334 ~~--~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          334 DD--IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             GG--CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             Cc--ccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            00  044               8899999999998          7999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-38  Score=257.89  Aligned_cols=231  Identities=11%  Similarity=0.066  Sum_probs=178.6

Q ss_pred             CCCceeeecccccccc---------ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCC
Q 023643            1 MCGDSTNWDEDAYRKS---------ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      .||+|++||++.....         ....+.+|...|++++|+|    + ..|++|+.||+|++||+++.          
T Consensus       233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~----~-~~lasgs~DgtV~lWD~~~~----------  297 (524)
T 2j04_B          233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS----P-TTVVCGFKNGFVAEFDLTDP----------  297 (524)
T ss_dssp             TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS----S-SEEEEEETTSEEEEEETTBC----------
T ss_pred             cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC----C-CeEEEEeCCCEEEEEECCCC----------
Confidence            4899999998764311         1236778999999999998    4 48999999999999999863          


Q ss_pred             cccceeeeccccccccCCccCeEEE--EecCCC-CceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643           72 SKVQQLLGIEPDGFLHGHDGPAYDV--KFYGGN-EDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ  148 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (279)
                              ..+...+.+|.++|.++  .|+|++ .  +|+|++.|++|+|||+++...   ...+.++...         
T Consensus       298 --------~~~~~~~~~H~~~V~sv~~~~s~~g~~--~laS~S~D~tvklWD~~~~~~---~~~~~~~~~~---------  355 (524)
T 2j04_B          298 --------EVPSFYDQVHDSYILSVSTAYSDFEDT--VVSTVAVDGYFYIFNPKDIAT---TKTTVSRFRG---------  355 (524)
T ss_dssp             --------SSCSEEEECSSSCEEEEEEECCTTSCC--EEEEEETTSEEEEECGGGHHH---HCEEEEECSC---------
T ss_pred             --------CCceEEeecccccEEEEEEEcCCCCCe--EEEEeccCCeEEEEECCCCCc---cccccccccc---------
Confidence                    23445678899999999  577876 6  999999999999999875322   1111111100         


Q ss_pred             CCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       149 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                                 ..|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.||+|++|
T Consensus       356 -----------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          356 -----------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT  424 (524)
T ss_dssp             -----------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred             -----------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence                       025789999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             eCCCC-----c---------eEEEecC----------------------CccccccCcceeeeEEEEcCCCC---EEEEE
Q 023643          229 DCKSG-----K---------CIKVIDP----------------------VKDKQLKGVISCVSCITLDASES---WLVRV  269 (279)
Q Consensus       229 d~~~~-----~---------~~~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~~~---~l~~~  269 (279)
                      |+..+     +         .+..+..                      .....+.+|...|.+++|+|++.   +||+|
T Consensus       425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg  504 (524)
T 2j04_B          425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS  504 (524)
T ss_dssp             BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred             echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence            97432     0         1111110                      11134567889999999999964   99999


Q ss_pred             cCcceEEeCC
Q 023643          270 RATNYVILFS  279 (279)
Q Consensus       270 ~~d~~i~~wd  279 (279)
                      +.||.|+||+
T Consensus       505 ~~~g~vrlw~  514 (524)
T 2j04_B          505 NSAGLLTLEY  514 (524)
T ss_dssp             CTTSEEEEEE
T ss_pred             ccCceEEEEE
Confidence            9999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=245.24  Aligned_cols=253  Identities=9%  Similarity=0.098  Sum_probs=187.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCC---CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGS---PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      ||.|++||+++....... ...|...|.+++|+|    +   +.+|++|+.||.|++||+.+.                 
T Consensus        43 d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~-----------------  100 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGA----TSLQQRYLATGDFGGNLHIWNLEAP-----------------  100 (357)
T ss_dssp             CEEEEEEEECSSSEEEEE-EEEESSCEEEEECTT----CCTTTCCEEEEETTSCEEEECTTSC-----------------
T ss_pred             CcEEEEEeCCCCccccee-eecccCcEEEEEEcC----CCCCCceEEEecCCCeEEEEeCCCC-----------------
Confidence            899999998876533232 336899999999999    6   699999999999999999983                 


Q ss_pred             eccccccccCCccCeEEEEe------cCCCCceEEEEeeCCCcEEEeecCCCccCcceee-eccCcccceEEee------
Q 023643           79 GIEPDGFLHGHDGPAYDVKF------YGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-LQGNHVKPVLDLV------  145 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~------~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~------  145 (279)
                       ..++..+.+|...|.++.|      +|+++  +|++++.||.|++||++.......... ..++....+..+.      
T Consensus       101 -~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (357)
T 3i2n_A          101 -EMPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN  177 (357)
T ss_dssp             -SSCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred             -CccEEEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence             2267778899999999965      57777  999999999999999986542211111 1111111222221      


Q ss_pred             ------------------cCCCCCccccCCCCCCceeEEEcC---CCCeEEEecCCCeEEEEecCCCcEEEEee-----c
Q 023643          146 ------------------NHQHKGPWGALSPVPENNAIAVDP---QGGAIFSAAGDSCAYCWDVESSRIKMVFK-----G  199 (279)
Q Consensus       146 ------------------~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~  199 (279)
                                        ............+...|.+++|+|   ++.++++++.|+.|++||+++++.+..+.     +
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  257 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA  257 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence                              000011111133456799999999   89999999999999999998876554444     8


Q ss_pred             CCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEecCC-----------ccccccCcceeeeEEEEcCCCCEEE
Q 023643          200 HSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVIDPV-----------KDKQLKGVISCVSCITLDASESWLV  267 (279)
Q Consensus       200 ~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~  267 (279)
                      |...|++++|+|+++ +|++++.||.|++||++.+.........           ....+.+|...|++++|+|++++|+
T Consensus       258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence            999999999999988 8999999999999999865322111000           0011267889999999999999998


Q ss_pred             -EEcCcceEEeCC
Q 023643          268 -RVRATNYVILFS  279 (279)
Q Consensus       268 -~~~~d~~i~~wd  279 (279)
                       +++.||.|++||
T Consensus       338 ~s~~~d~~i~iw~  350 (357)
T 3i2n_A          338 VCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEETTSEEEEEE
T ss_pred             EEecCCCcEEEEE
Confidence             899999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=239.72  Aligned_cols=239  Identities=13%  Similarity=0.108  Sum_probs=195.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+...  ..+..+..|...|.+++|+|    ++++|++++.||.|++||+.+                   +
T Consensus        52 ~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~-------------------~  106 (369)
T 3zwl_B           52 KDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDC----FTKYCVTGSADYSIKLWDVSN-------------------G  106 (369)
T ss_dssp             SSSCEEEEETTTC--CEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTT-------------------C
T ss_pred             CCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence            3899999998876  44777888999999999999    899999999999999999998                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCC-----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD-----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                      +.+..+. |..++.+++|+|++.  +|++++.+     +.|++||++...............   +..+.....      
T Consensus       107 ~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~------  174 (369)
T 3zwl_B          107 QCVATWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP---IHKIITHEG------  174 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC---SEEEECCTT------
T ss_pred             cEEEEee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccccce---eeeccCCcC------
Confidence            5555555 788999999999998  99999998     999999987643332222222111   111111111      


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                         ...+.+++|+|++++|++++.|+.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus       175 ---~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          175 ---LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             ---CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ---ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence               11489999999999999999999999999998 78889999999999999999999999999999999999999988


Q ss_pred             eEEEecCCc-----------------------------------------------cccccCcceeeeEEEEcCCCCEEE
Q 023643          235 CIKVIDPVK-----------------------------------------------DKQLKGVISCVSCITLDASESWLV  267 (279)
Q Consensus       235 ~~~~~~~~~-----------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~  267 (279)
                      .+..+....                                               ...+.+|...|++++|+|++++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  331 (369)
T 3zwl_B          252 VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA  331 (369)
T ss_dssp             EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence            776654211                                               012346888999999999999999


Q ss_pred             EEcCcceEEeCC
Q 023643          268 RVRATNYVILFS  279 (279)
Q Consensus       268 ~~~~d~~i~~wd  279 (279)
                      +++.||.|++|+
T Consensus       332 s~~~dg~v~iw~  343 (369)
T 3zwl_B          332 SGGEDGFIRLHH  343 (369)
T ss_dssp             EEETTSEEEEEE
T ss_pred             EEcCCCeEEEEE
Confidence            999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.6e-38  Score=250.62  Aligned_cols=247  Identities=9%  Similarity=-0.018  Sum_probs=166.7

Q ss_pred             CCCceeeeccccccc---cceeeeeecccceEEEEECCCC----CCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc
Q 023643            1 MCGDSTNWDEDAYRK---SILKEREILTRTVFRTVWGPSK----DGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK   73 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   73 (279)
                      .|++|||||.+....   ..+..+.+|.+.|++++|+|..    ..++++||+|+.|++|+|||+.+             
T Consensus       109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~-------------  175 (393)
T 4gq1_A          109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD-------------  175 (393)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET-------------
T ss_pred             CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC-------------
Confidence            489999999887643   2345678999999999998721    12678999999999999999987             


Q ss_pred             cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc
Q 023643           74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW  153 (279)
Q Consensus        74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (279)
                            ..++..+..|..+|.+++|+|++. .+|++++.|++|++||+++..............................
T Consensus       176 ------~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          176 ------EGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             ------TEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             ------CceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence                  455566777889999999999875 4899999999999999976533222221111111111111111111111


Q ss_pred             ccCCCCCCceeEEEc-CCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEE------------------EcC--C
Q 023643          154 GALSPVPENNAIAVD-PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIV------------------ARN--S  212 (279)
Q Consensus       154 ~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~------------------~~~--~  212 (279)
                      ....+...+.++.|. |+++.+++++.|+.+++||+..++....+..|...+..+.                  ++|  +
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence            122344568899987 7999999999999999999998877666655554444333                  333  3


Q ss_pred             CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643          213 TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV  275 (279)
Q Consensus       213 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  275 (279)
                      +.++++|+.||.|++||+.+++.....        ..|..+|.+++|+|||++||+++.+|.+
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~--------~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIP--------IQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEE--------EECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEe--------cCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            457788999999999999999888776        5777899999999999999999988864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.8e-37  Score=249.39  Aligned_cols=245  Identities=16%  Similarity=0.133  Sum_probs=184.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc------------ccc
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL------------PLG   68 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~   68 (279)
                      .||.|+|||++.........+.+|.+.|++++|+|.   ++++|++|+.||+|++||+++.....            .+.
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD  216 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence            489999999987765556667789999999999984   78999999999999999997643211            111


Q ss_pred             cCCcc----------cceee--eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC
Q 023643           69 LSNSK----------VQQLL--GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN  136 (279)
Q Consensus        69 ~~~~~----------~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  136 (279)
                      +.+..          .-.++  .++.+..+.+|..+|.+++|+|++. .+|++++.|+.|++||++............+ 
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~-  294 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLP-  294 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCB-
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeee-
Confidence            11111          00111  1456677889999999999999876 4789999999999999876433222222111 


Q ss_pred             cccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCc------ceEEEEEc
Q 023643          137 HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSD------YLHCIVAR  210 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~i~~i~~~  210 (279)
                                           +...|++++|+|++.+|++++.|+.|++||+.+++....+..|..      .+....|+
T Consensus       295 ---------------------h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          295 ---------------------HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             ---------------------CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             ---------------------ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence                                 122478999999999999999999999999999988877765542      23345677


Q ss_pred             CCCcEEEEec------------CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE-EEcCCCCEEEEEcCcceEEe
Q 023643          211 NSTNQIVTGS------------EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI-TLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       211 ~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~  277 (279)
                      |++.++++++            .++.|++||..+++.+..+.       .+|...|.++ +|+|+|++|++|+ |+.|+|
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------~~~~~~v~s~~~fspdg~~lasg~-d~~i~i  425 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------DPESSGISSLNEFNPMGDTLASAM-GYHILI  425 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence            7666666554            34679999999999988874       4677788887 6999999999886 789999


Q ss_pred             CC
Q 023643          278 FS  279 (279)
Q Consensus       278 wd  279 (279)
                      ||
T Consensus       426 W~  427 (435)
T 4e54_B          426 WS  427 (435)
T ss_dssp             CC
T ss_pred             EE
Confidence            97

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-37  Score=245.65  Aligned_cols=241  Identities=12%  Similarity=0.134  Sum_probs=186.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++..  ..+..+..|...|.+++|+|.   ++.+|++++.||.|++||+.+                   +
T Consensus        93 ~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~-------------------~  148 (366)
T 3k26_A           93 SRGIIRIINPITM--QCIKHYVGHGNAINELKFHPR---DPNLLLSVSKDHALRLWNIQT-------------------D  148 (366)
T ss_dssp             TTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSS---CTTEEEEEETTSCEEEEETTT-------------------T
T ss_pred             CCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCC---CCCEEEEEeCCCeEEEEEeec-------------------C
Confidence            4899999998876  346778889999999999994   689999999999999999987                   3


Q ss_pred             cccccc---cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-----eccCcccceEEeecCCCCCc
Q 023643           81 EPDGFL---HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-----LQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        81 ~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  152 (279)
                      +.+..+   .+|...|.+++|+|++.  +|++++.||.|++||++..........     ..+.. ........ .....
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~  224 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGE--KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN-RPFISQKI-HFPDF  224 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSS--EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS-SCCCCEEE-CCCSE
T ss_pred             eEEEEecccccccCceeEEEECCCCC--EEEEecCCCCEEEEECCCCccccccceeEEecCCCCc-ccccceee-ccCcc
Confidence            444444   67999999999999998  999999999999999875422111000     00000 00000000 00000


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE--------------EEEeecCCcceEEEEEcCC--CcEE
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI--------------KMVFKGHSDYLHCIVARNS--TNQI  216 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~i~~i~~~~~--~~~l  216 (279)
                      .....+...|.+++|+  ++++++++.|+.|++||+++++.              +..+..|...|.+++|+|+  +++|
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence            0011244568999998  67999999999999999987643              7788899999999999999  9999


Q ss_pred             EEecCCCeEEEEeCCCCceE----EEecCCccccccCc--ceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGKCI----KVIDPVKDKQLKGV--ISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++.||.|++||+++++..    ..+        ..|  ...|++++|+|++++|++++.||.|++||
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTL--------THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEE--------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEecCCcEEEEECCCCCCccccceEE--------cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence            99999999999999987643    345        444  78999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.7e-37  Score=247.60  Aligned_cols=218  Identities=14%  Similarity=0.168  Sum_probs=180.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.|++||......  ...+..| ..+....|+|    ++++|++|+.||.|++||+.+                   .+
T Consensus        77 d~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~-------------------~~  130 (420)
T 3vl1_A           77 DGHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKL----QMRRFILGTTEGDIKVLDSNF-------------------NL  130 (420)
T ss_dssp             TTEEEEEECCSEET--TTTSCSC-CEEEEEEECS----SSCEEEEEETTSCEEEECTTS-------------------CE
T ss_pred             CCcEEEEEecccce--eeEEecC-CceEEEEEec----CCCEEEEEECCCCEEEEeCCC-------------------cc
Confidence            78999999887643  3344444 4455557888    899999999999999999987                   56


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ....+.+|.+.|.+++|+|+++  +|++++.|+.|++||+++..   ....+.++                      ...
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~---~~~~~~~h----------------------~~~  183 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGS---NPRTLIGH----------------------RAT  183 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC---CCEEEECC----------------------SSC
T ss_pred             eeeecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCc---CceEEcCC----------------------CCc
Confidence            6667788999999999999998  99999999999999987542   22222221                      124


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---CCcceEE---------------------EEEcCCCcEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---HSDYLHC---------------------IVARNSTNQIV  217 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------i~~~~~~~~l~  217 (279)
                      |.+++|+|++++|++++.|+.|++||+++++.+..+..   +...+.+                     ++|+|++++|+
T Consensus       184 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (420)
T 3vl1_A          184 VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI  263 (420)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence            79999999999999999999999999999999998875   3344444                     45578899999


Q ss_pred             EecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643          218 TGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS  279 (279)
Q Consensus       218 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd  279 (279)
                      +++.||.|++||+++++....+.       ..|...|.+++|+|++. +|++|+.||.|++||
T Consensus       264 ~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          264 AGHVSGVITVHNVFSKEQTIQLP-------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC-------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             EEcCCCeEEEEECCCCceeEEcc-------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999998888774       46788999999999998 999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-36  Score=246.21  Aligned_cols=238  Identities=15%  Similarity=0.209  Sum_probs=187.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.+  .+..+.+|...|.+++|+|    ++ +|++|+.||+|++||+.+                   +
T Consensus       140 ~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~----~~-~l~s~s~dg~i~vwd~~~-------------------~  193 (464)
T 3v7d_B          140 DDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAH----GG-ILVSGSTDRTVRVWDIKK-------------------G  193 (464)
T ss_dssp             TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECS----TT-EEEEEETTSCEEEEETTT-------------------T
T ss_pred             CCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcC----CC-EEEEEeCCCCEEEEECCC-------------------C
Confidence            48999999988774  4778889999999999999    66 999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC-CccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK-GPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  159 (279)
                      +.+..+.+|.++|.+++|++...+.+|++++.||.|++||++...........   ...+.......... .......+.
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE---HDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc---CCcceEeeccCCCeEEEEEccCcc
Confidence            67778889999999999995332249999999999999998754322111000   00000000000000 000011122


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..+.++  +++++++++++.|+.|++||+++++++..+.+|...|.+++|+|+++++++|+.||.|++||+++++++..+
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            234554  677889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .+|...|.+++|+  +.+|++|+.||.|++||
T Consensus       349 --------~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          349 --------QGHTALVGLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             --------CCCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             --------eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence                    6888999999997  58999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-36  Score=242.77  Aligned_cols=231  Identities=18%  Similarity=0.171  Sum_probs=186.0

Q ss_pred             CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ||.|+||+++....  ..+..+.+|...|.+++|+|.   ++++|++|+.||+|++|++.+.......            
T Consensus        56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~---~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------  120 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPL------------  120 (402)
T ss_dssp             SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT---CTTEEEEEETTSEEEEEECCTTCCSSCB------------
T ss_pred             CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC---CCCEEEEEeCCCeEEEEEccCCCCcccc------------
Confidence            79999999754321  345567889999999999994   6889999999999999999874211100            


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeec-cCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      .+++..+.+|...|.+++|+|++. .+|++++.||.|++||+++.   .....+. ..+                     
T Consensus       121 ~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~---------------------  175 (402)
T 2aq5_A          121 REPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTG---AAVLTLGPDVH---------------------  175 (402)
T ss_dssp             CSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTT---EEEEEECTTTC---------------------
T ss_pred             CCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCC---CccEEEecCCC---------------------
Confidence            156677889999999999999973 29999999999999998753   2222221 111                     


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcc-eEEEEEcCCCcEEEEe---cCCCeEEEEeCCCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDY-LHCIVARNSTNQIVTG---SEDGTARIWDCKSG  233 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~l~~~---~~d~~i~vwd~~~~  233 (279)
                      ...|.+++|+|++.+|++++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++++|++|   +.|+.|++||++++
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            124799999999999999999999999999999999988 678776 8999999999999999   89999999999987


Q ss_pred             ce-EEEecCCccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeCC
Q 023643          234 KC-IKVIDPVKDKQLKGVISCVSCITLDASESWLV-RVRATNYVILFS  279 (279)
Q Consensus       234 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd  279 (279)
                      +. +....       ..|...+.+++|+|++++|+ +|+.||.|++||
T Consensus       256 ~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d  296 (402)
T 2aq5_A          256 EEPLSLQE-------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE  296 (402)
T ss_dssp             SSCSEEEE-------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred             cCCceEEe-------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence            64 33331       25667799999999999986 566899999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.1e-38  Score=242.22  Aligned_cols=206  Identities=16%  Similarity=0.198  Sum_probs=164.0

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      .+.+|.+.|++++|+|    ++++||+|+.|++|+|||+.++.                 ...+..+.+|.++|.+++|+
T Consensus         8 ~~~~H~~~V~~v~~s~----~g~~lasgs~D~~v~lwd~~~~~-----------------~~~~~~l~gH~~~V~~v~~~   66 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY----YGTRLATCSSDRSVKIFDVRNGG-----------------QILIADLRGHEGPVWQVAWA   66 (316)
T ss_dssp             ------CCEEEEEECG----GGCEEEEEETTTEEEEEEEETTE-----------------EEEEEEEECCSSCEEEEEEC
T ss_pred             ecccccCeEEEeeEcC----CCCEEEEEeCCCeEEEEEecCCC-----------------cEEEEEEcCCCccEEEEEeC
Confidence            4568999999999999    89999999999999999998631                 12456788999999999998


Q ss_pred             CC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeEE
Q 023643          100 GG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAIF  175 (279)
Q Consensus       100 ~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  175 (279)
                      |.  +.  +|++++.|++|++||+++.. ......+.++                      ...|++++|+|+  +.+|+
T Consensus        67 ~~~~~~--~l~s~s~D~~v~iWd~~~~~-~~~~~~~~~h----------------------~~~V~~v~~~p~~~g~~la  121 (316)
T 3bg1_A           67 HPMYGN--ILASCSYDRKVIIWREENGT-WEKSHEHAGH----------------------DSSVNSVCWAPHDYGLILA  121 (316)
T ss_dssp             CGGGSS--CEEEEETTSCEEEECCSSSC-CCEEEEECCC----------------------SSCCCEEEECCTTTCSCEE
T ss_pred             CCCCCC--EEEEEECCCEEEEEECCCCc-ceEEEEccCC----------------------CCceEEEEECCCCCCcEEE
Confidence            64  55  99999999999999986431 1111122221                      124799999998  77999


Q ss_pred             EecCCCeEEEEecCCCcE---EEEeecCCcceEEEEEcCC-----------------CcEEEEecCCCeEEEEeCCCC--
Q 023643          176 SAAGDSCAYCWDVESSRI---KMVFKGHSDYLHCIVARNS-----------------TNQIVTGSEDGTARIWDCKSG--  233 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~-----------------~~~l~~~~~d~~i~vwd~~~~--  233 (279)
                      +|+.|+.|++||++.+..   ...+.+|...+.+++|+|+                 +++|++|+.|++|++||++.+  
T Consensus       122 sgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~  201 (316)
T 3bg1_A          122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ  201 (316)
T ss_dssp             EECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC
T ss_pred             EEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc
Confidence            999999999999987632   3456789999999999997                 478999999999999999765  


Q ss_pred             -ceEEEecCCccccccCcceeeeEEEEcCCC----CEEEEEcCcceEEeCC
Q 023643          234 -KCIKVIDPVKDKQLKGVISCVSCITLDASE----SWLVRVRATNYVILFS  279 (279)
Q Consensus       234 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd  279 (279)
                       +++..+        .+|...|.+++|+|++    .+|++|+.|++|++||
T Consensus       202 ~~~~~~l--------~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          202 WKEEQKL--------EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             EEEEECC--------BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             cceeeec--------ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence             344444        7899999999999986    8899999999999995

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.3e-36  Score=243.63  Aligned_cols=231  Identities=16%  Similarity=0.256  Sum_probs=185.9

Q ss_pred             CCCceeeeccccc--------cccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCC
Q 023643            1 MCGDSTNWDEDAY--------RKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         1 ~dG~v~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      .||.|++|++...        ....+..+.+|...|++++|+|    ++. +|++|+.||.|++|++........     
T Consensus       149 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----  219 (430)
T 2xyi_A          149 PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP----NLNGYLLSASDDHTICLWDINATPKEHR-----  219 (430)
T ss_dssp             SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT----TSTTEEEEECTTSCEEEEETTSCCBGGG-----
T ss_pred             CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC----CCCCeEEEEeCCCeEEEEeCCCCCCCCc-----
Confidence            3799999998762        2345667889999999999999    666 999999999999999987321100     


Q ss_pred             cccceeeeccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           72 SKVQQLLGIEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                           .  ..+...+.+|...|.+++|+| ++.  +|++++.||.|++||++..........+..+              
T Consensus       220 -----~--~~~~~~~~~h~~~v~~v~~~p~~~~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~--------------  276 (430)
T 2xyi_A          220 -----V--IDAKNIFTGHTAVVEDVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDAH--------------  276 (430)
T ss_dssp             -----E--EECSEEECCCSSCEEEEEECSSCTT--EEEEEETTSEEEEEETTCSCSSSCSEEEECC--------------
T ss_pred             -----e--eccceeecCCCCCEeeeEEeCCCCC--EEEEEeCCCeEEEEECCCCCCCcceeEeecC--------------
Confidence                 0  123456678999999999999 454  9999999999999999864322222222211              


Q ss_pred             CccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEE
Q 023643          151 GPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARI  227 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~v  227 (279)
                              ...|++++|+|++. ++++|+.||.|++||+++ ..++..+..|...|.+++|+|++ .+|++++.|+.|+|
T Consensus       277 --------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          277 --------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             --------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             --------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence                    12479999999987 688999999999999998 56788899999999999999987 57999999999999


Q ss_pred             EeCCCC--------------ceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643          228 WDCKSG--------------KCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILFS  279 (279)
Q Consensus       228 wd~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd  279 (279)
                      ||+...              +.+..+        .+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIH--------GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEEC--------CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EeCCCCccccCccccccCCcceEEEc--------CCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            999872              444444        68888999999999999 899999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-37  Score=245.31  Aligned_cols=229  Identities=19%  Similarity=0.284  Sum_probs=185.9

Q ss_pred             CCceeeecccccccc-ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKS-ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||.|++||+++.... .+..+ .|...|.+++|+|    ++.+|++++.||.|++|++.+....               .
T Consensus        44 d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~----~~~~l~~~~~dg~v~vw~~~~~~~~---------------~  103 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH----NNKIIAGALDNGSLELYSTNEANNA---------------I  103 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS----SSSCEEEEESSSCEEEECCSSTTSC---------------C
T ss_pred             CCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC----CCCeEEEEccCCeEEEeeccccccc---------------c
Confidence            789999998876532 23333 5889999999999    8999999999999999999862110               2


Q ss_pred             cccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCccCc---ceeeeccCcccceEEeecCCCCCccccC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESK---VPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      +.+..+.+|..+|.+++|+|+ +.  +|++++.|+.|++||++......   ......                   ...
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------------------~~~  162 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-------------------QSM  162 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-------------------CSC
T ss_pred             cchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccccccccc-------------------ccc
Confidence            355677889999999999998 66  99999999999999987643110   000000                   001


Q ss_pred             CCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecC------CcceEEEEEcCCC-cEEEEecCCC---eE
Q 023643          157 SPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGH------SDYLHCIVARNST-NQIVTGSEDG---TA  225 (279)
Q Consensus       157 ~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~-~~l~~~~~d~---~i  225 (279)
                      .+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            12234899999998 789999999999999999999999988876      7899999999986 6899999999   99


Q ss_pred             EEEeCCCC-ceEEEecCCcccccc-CcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          226 RIWDCKSG-KCIKVIDPVKDKQLK-GVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       226 ~vwd~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                      ++||++++ +.+..+        . +|...|.+++|+| ++++|++++.|+.|++||
T Consensus       243 ~~~d~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          243 LIWDLRNANTPLQTL--------NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CEEETTSTTSCSBCC--------CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             EEEeCCCCCCCcEEe--------ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence            99999986 455555        5 7888999999999 999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-36  Score=240.40  Aligned_cols=241  Identities=13%  Similarity=0.128  Sum_probs=189.3

Q ss_pred             CCCceeeecc----ccccc----cceeeeee----------cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCC
Q 023643            1 MCGDSTNWDE----DAYRK----SILKEREI----------LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCI   62 (279)
Q Consensus         1 ~dG~v~iw~~----~~~~~----~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~   62 (279)
                      .||.|++|++    .+...    .....+..          |...|.+++|+|    ++++|++++.||.|++|+..   
T Consensus        66 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~i~~~~---  138 (425)
T 1r5m_A           66 KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH----DGNSIVTGVENGELRLWNKT---  138 (425)
T ss_dssp             TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT----TSSEEEEEETTSCEEEEETT---
T ss_pred             CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC----CCCEEEEEeCCCeEEEEeCC---
Confidence            3799999999    65541    01222222          678999999999    89999999999999999933   


Q ss_pred             cccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc----
Q 023643           63 SKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV----  138 (279)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----  138 (279)
                                       ++.+..+..|..+|.+++|+|+++  +|++++.|+.|++||+++....   ..+..+..    
T Consensus       139 -----------------~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~  196 (425)
T 1r5m_A          139 -----------------GALLNVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVM---QHFELKETGGSS  196 (425)
T ss_dssp             -----------------SCEEEEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEE---EEECCC------
T ss_pred             -----------------CCeeeeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEE---EEeeccccCccc
Confidence                             456677888999999999999998  9999999999999998754221   11111100    


Q ss_pred             ------------------------------cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEec
Q 023643          139 ------------------------------KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV  188 (279)
Q Consensus       139 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  188 (279)
                                                    ..+.-+.............+...|.+++|+|++++|++++.|+.|++||+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred             eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                                          00111111111111122345567999999999999999999999999999


Q ss_pred             CCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643          189 ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVR  268 (279)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  268 (279)
                      ++++.+..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+        ..|...|.+++|+|++++|++
T Consensus       277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS--------IVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE--------ECTTCCEEEEEECTTSSEEEE
T ss_pred             CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec--------ccCCccEEEEEEcCCCCEEEE
Confidence            9999999999999999999999999 9999999999999999999998888        677889999999999999999


Q ss_pred             EcCcceEEeCC
Q 023643          269 VRATNYVILFS  279 (279)
Q Consensus       269 ~~~d~~i~~wd  279 (279)
                      ++.||.|++||
T Consensus       348 ~~~dg~i~i~~  358 (425)
T 1r5m_A          348 AFMDGQVNVYD  358 (425)
T ss_dssp             EETTSCEEEEE
T ss_pred             EECCCeEEEEE
Confidence            99999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-36  Score=241.48  Aligned_cols=223  Identities=11%  Similarity=0.056  Sum_probs=178.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.....+.....|...|.+++|+|    ++.+|++|+.||.|++||+.                    .
T Consensus       139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~--------------------~  194 (383)
T 3ei3_B          139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV----SRQMLATGDSTGRLLLLGLD--------------------G  194 (383)
T ss_dssp             TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET----TTTEEEEEETTSEEEEEETT--------------------S
T ss_pred             CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC----CCCEEEEECCCCCEEEEECC--------------------C
Confidence            48999999998754333434445568899999999    89999999999999999994                    4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +++..+.+|...|.+++|+|+++ .+|++++.|+.|++||++............+ +                     ..
T Consensus       195 ~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~---------------------~~  251 (383)
T 3ei3_B          195 HEIFKEKLHKAKVTHAEFNPRCD-WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H---------------------EK  251 (383)
T ss_dssp             CEEEEEECSSSCEEEEEECSSCT-TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C---------------------SS
T ss_pred             CEEEEeccCCCcEEEEEECCCCC-CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C---------------------CC
Confidence            56677888999999999999985 4899999999999999876432211111111 1                     11


Q ss_pred             CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCC-----------------cceEEEEEcCCCcEEEEecCC
Q 023643          161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----------------DYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      .|.+++|+| ++.+|++++.|+.|++||+++++....+..|.                 ..+..++|+|++++  +++.|
T Consensus       252 ~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d  329 (383)
T 3ei3_B          252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK  329 (383)
T ss_dssp             CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence            379999999 99999999999999999999887777666543                 34455677777766  78899


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.|++||+.+++.+..+..      ..|...+..++|+|++++|++|+ |+.|++||
T Consensus       330 ~~i~iwd~~~~~~~~~l~~------~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          330 RTIDIYDANSGGLVHQLRD------PNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             CCEEEEETTTCCEEEEECB------TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             CeEEEEecCCCceeeeecC------CCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence            9999999999999998843      23567788889999999999997 99999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-36  Score=241.39  Aligned_cols=236  Identities=14%  Similarity=0.189  Sum_probs=192.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc-------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK-------   73 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------   73 (279)
                      .||.|++||.++   ..+..+..|...|.+++|+|    ++++|++++.||.|++||+.+......+......       
T Consensus       128 ~dg~i~i~~~~~---~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  200 (425)
T 1r5m_A          128 ENGELRLWNKTG---ALLNVLNFHRAPIVSVKWNK----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE  200 (425)
T ss_dssp             TTSCEEEEETTS---CEEEEECCCCSCEEEEEECT----TSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred             CCCeEEEEeCCC---CeeeeccCCCccEEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence            379999999544   45667788999999999999    8999999999999999999876543322221111       


Q ss_pred             ----------------cce-----------ee---eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC
Q 023643           74 ----------------VQQ-----------LL---GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE  123 (279)
Q Consensus        74 ----------------~~~-----------~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  123 (279)
                                      ...           ++   ..+++..+..|..+|.+++|+|+++  +|++++.|+.|++||++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~  278 (425)
T 1r5m_A          201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRIWHGGN  278 (425)
T ss_dssp             -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEECSSS
T ss_pred             cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC--EEEEEcCCCEEEEEECCC
Confidence                            000           00   0345556778999999999999998  999999999999999875


Q ss_pred             CccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc
Q 023643          124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY  203 (279)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  203 (279)
                      ..   ....+..+                      ...|.+++|+|++ .+++++.|+.|++||+++++.+..+..|...
T Consensus       279 ~~---~~~~~~~~----------------------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          279 GN---SQNCFYGH----------------------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             BS---CSEEECCC----------------------SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred             Cc---cceEecCC----------------------CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence            32   11222211                      1237899999999 9999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEecCCCeEEEEeCCCCc--------------------eEEEecCCccccccCcce--eeeEEEEcC
Q 023643          204 LHCIVARNSTNQIVTGSEDGTARIWDCKSGK--------------------CIKVIDPVKDKQLKGVIS--CVSCITLDA  261 (279)
Q Consensus       204 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~--------------------~~~~~~~~~~~~~~~~~~--~v~~~~~~~  261 (279)
                      |.+++|+|++++|++++.||.|++||+++++                    .+..+        ..|..  .|++++|+|
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY--------QSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE--------CCTTCCCCEEEEEECT
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh--------cCcccCCceEEEEccC
Confidence            9999999999999999999999999999887                    67776        67755  999999999


Q ss_pred             CCCEEEEEcCcceEEeCC
Q 023643          262 SESWLVRVRATNYVILFS  279 (279)
Q Consensus       262 ~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++|++++.||.|++||
T Consensus       405 ~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          405 AGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             TSSEEEEEESSSCCEEEE
T ss_pred             CCceEEEEecCceEEEEe
Confidence            999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-37  Score=246.19  Aligned_cols=236  Identities=11%  Similarity=0.142  Sum_probs=189.3

Q ss_pred             CCCceeeecccccc--ccceeeeeecccceEEEEECCCCCCC-CCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYR--KSILKEREILTRTVFRTVWGPSKDGS-PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .||.|++||+....  ...+..+..|...|.+++|+|    + +.+|++++.||.|++||+.+........       . 
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~-  154 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA----KQDNVLASGGNNGEIFIWDMNKCTESPSNY-------T-  154 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS----SSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------C-
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcC----CCCCEEEEEcCCCeEEEEECCCCccccccc-------c-
Confidence            38999999987721  235667888999999999999    6 8999999999999999998743110000       0 


Q ss_pred             eeccccccccCCccCeEEEEecCC-CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        ......+..|...|.+++|+|+ +.  +|++++.||.|++||++..   .....+..+..                ..
T Consensus       155 --~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~----------------~~  211 (416)
T 2pm9_A          155 --PLTPGQSMSSVDEVISLAWNQSLAH--VFASAGSSNFASIWDLKAK---KEVIHLSYTSP----------------NS  211 (416)
T ss_dssp             --CBCCCCSCCSSCCCCEEEECSSCTT--EEEEESSSSCEEEEETTTT---EEEEEECCCCC----------------SS
T ss_pred             --ccccccccCCCCCeeEEEeCCCCCc--EEEEEcCCCCEEEEECCCC---CcceEEecccc----------------cc
Confidence              1112334679999999999999 55  9999999999999998753   22222221100                00


Q ss_pred             CCCCCceeEEEcCCC-CeEEEecCCC---eEEEEecCCC-cEEEEee-cCCcceEEEEEcC-CCcEEEEecCCCeEEEEe
Q 023643          157 SPVPENNAIAVDPQG-GAIFSAAGDS---CAYCWDVESS-RIKMVFK-GHSDYLHCIVARN-STNQIVTGSEDGTARIWD  229 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d~~~~-~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd  229 (279)
                      .+...|.+++|+|++ .++++++.|+   .|++||++++ +++..+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus       212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence            112248999999997 5899999998   9999999986 6777888 8999999999999 899999999999999999


Q ss_pred             CCCCceEEEecCCccccccCcceeeeEEEEcCCC-CEEEEEcCcceEEeCC
Q 023643          230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE-SWLVRVRATNYVILFS  279 (279)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd  279 (279)
                      +++++.+..+        ..|...|.+++|+|++ .+|++++.|+.|++||
T Consensus       292 ~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~  334 (416)
T 2pm9_A          292 PESAEQLSQF--------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQT  334 (416)
T ss_dssp             SSSCCEEEEE--------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred             CCCCccceee--------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence            9999999988        6788899999999998 8999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.5e-36  Score=255.05  Aligned_cols=230  Identities=17%  Similarity=0.208  Sum_probs=182.8

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|++||+....  .+..+.+|...|.+++|+|    ++++|++|+.|++|++||......                .
T Consensus       450 ~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~D~~i~iwd~~~~~~----------------~  507 (694)
T 3dm0_A          450 WDGELRLWDLAAGV--STRRFVGHTKDVLSVAFSL----DNRQIVSASRDRTIKLWNTLGECK----------------Y  507 (694)
T ss_dssp             TTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT----TSSCEEEEETTSCEEEECTTSCEE----------------E
T ss_pred             CCCcEEEEECCCCc--ceeEEeCCCCCEEEEEEeC----CCCEEEEEeCCCEEEEEECCCCcc----------------e
Confidence            48999999988763  4677889999999999999    899999999999999999864210                1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .......+|...|.+++|+|++....|++++.|++|++||++..   .....+.++                      ..
T Consensus       508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h----------------------~~  562 (694)
T 3dm0_A          508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGH----------------------TG  562 (694)
T ss_dssp             EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCC----------------------SS
T ss_pred             eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCC----------------------CC
Confidence            11223357999999999999874348999999999999998643   222222222                      12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|++++|+|++++|++++.|+.|++||+++++.+..+. +...|.+++|+|++.++++++ ++.|++||+++++.+..+.
T Consensus       563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence            37999999999999999999999999999999988876 456799999999998888765 5669999999999888775


Q ss_pred             CCccc-----------cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDK-----------QLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+...           ....+...+++++|+|+|++|++|+.||.|++||
T Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             CCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence            43210           0011223478999999999999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-35  Score=230.47  Aligned_cols=220  Identities=14%  Similarity=0.244  Sum_probs=184.5

Q ss_pred             CCceeeeccccccc-cceeeee--ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRK-SILKERE--ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      ||.|++||++.... ..+..+.  .|...|.+++|+|    ++++|++++.||.|++||+.+..                
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~----------------  130 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPT----------------  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC-----------------
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC----CCCEEEEEcCCCcEEEEECCCCC----------------
Confidence            78999999876532 2233333  6889999999999    89999999999999999998732                


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       ......+..|...|.+++|+|+++  +|++++.||.|++||+++.   .....+..+                      
T Consensus       131 -~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~~~d~~~~---~~~~~~~~~----------------------  182 (337)
T 1gxr_A          131 -PRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQ---TLVRQFQGH----------------------  182 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT---EEEEEECCC----------------------
T ss_pred             -cceeeecccCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCC---ceeeeeecc----------------------
Confidence             124456778999999999999998  9999999999999998643   222222221                      


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ...+.+++|+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||+++++.. .
T Consensus       183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~  260 (337)
T 1gxr_A          183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-Q  260 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-E
T ss_pred             cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-E
Confidence            1237899999999999999999999999999999888876 7888999999999999999999999999999987754 3


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +        ..|...|.+++|+|++++|++++.||.|++||
T Consensus       261 ~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          261 L--------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             E--------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             E--------cCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            4        57888999999999999999999999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=259.62  Aligned_cols=230  Identities=16%  Similarity=0.199  Sum_probs=188.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCC--CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGS--PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|++||+.+.....+..+.+|..+|++++|+|    +  +++|++|+.||.|++||+.++.                
T Consensus        29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~----~~~~~~l~s~s~Dg~I~vwd~~~~~----------------   88 (753)
T 3jro_A           29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH----PKFGTILASCSYDGKVLIWKEENGR----------------   88 (753)
T ss_dssp             TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC----TTSCSEEEEEETTSCEEEEEEETTE----------------
T ss_pred             CCCcEEEEecCCCCCccceeccCCcCceEEEEecC----CCCCCEEEEEeCCCeEEEEECCCCc----------------
Confidence            48999999988555466778889999999999998    6  8999999999999999998731                


Q ss_pred             eccccccccCCccCeEEEEecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                       ...+..+.+|..+|.+++|+|+  +.  ++++++.||.|++||++...... .....++                    
T Consensus        89 -~~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~-~~~~~~~--------------------  144 (753)
T 3jro_A           89 -WSQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS-PIIIDAH--------------------  144 (753)
T ss_dssp             -EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCC-CEEEECC--------------------
T ss_pred             -ccccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcc-eeEeecC--------------------
Confidence             1255677789999999999999  77  99999999999999987542211 1111111                    


Q ss_pred             CCCCCceeEEEcC-------------CCCeEEEecCCCeEEEEecCCC----cEEEEeecCCcceEEEEEcCC---CcEE
Q 023643          157 SPVPENNAIAVDP-------------QGGAIFSAAGDSCAYCWDVESS----RIKMVFKGHSDYLHCIVARNS---TNQI  216 (279)
Q Consensus       157 ~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~i~~~~~---~~~l  216 (279)
                        ...|.+++|+|             ++..+++|+.||.|++||++++    .+...+.+|...|++++|+|+   +++|
T Consensus       145 --~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l  222 (753)
T 3jro_A          145 --AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  222 (753)
T ss_dssp             --SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             --CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence              12378999999             5889999999999999999876    566778899999999999999   9999


Q ss_pred             EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++.||.|++||+++++.......   .....|...|++++|+|++++|++|+.||.|++||
T Consensus       223 ~s~s~Dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          223 ASVSQDRTCIIWTQDNEQGPWKKTL---LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             EEEESSSCEEEEEESSSSSCCBCCB---SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             EEEecCCEEEEecCCCCCCcceeEE---eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            9999999999999988642211110   01146788999999999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=227.32  Aligned_cols=236  Identities=19%  Similarity=0.257  Sum_probs=187.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.  .....+..|...|.+++|+|    ++.+|++++.||.|++|++.....                .
T Consensus        37 ~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~----------------~   94 (313)
T 3odt_A           37 RDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDS----EKELLLFGGKDTMINGVPLFATSG----------------E   94 (313)
T ss_dssp             TTSEEEEEEESSS--EEEEEEEECSSCEEEEEEET----TTTEEEEEETTSCEEEEETTCCTT----------------S
T ss_pred             cCCcEEEEECCCC--EEEEEeecCCccEEEEEECC----CCCEEEEecCCCeEEEEEeeecCC----------------C
Confidence            4899999998775  34667788999999999999    899999999999999999976321                3


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEee-------------cC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV-------------NH  147 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~  147 (279)
                      +++..+.+|...|.+++|.  +.  +|++++.||.|++||...     ....+.. +..++..+.             ..
T Consensus        95 ~~~~~~~~~~~~i~~~~~~--~~--~l~~~~~d~~i~~~d~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           95 DPLYTLIGHQGNVCSLSFQ--DG--VVISGSWDKTAKVWKEGS-----LVYNLQA-HNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             CC-CEECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTE-----EEEEEEC-CSSCEEEEEEEETTTTEEEEEETT
T ss_pred             CcccchhhcccCEEEEEec--CC--EEEEEeCCCCEEEEcCCc-----EEEeccc-CCCceeEEEEccCCCCEEEEEECC
Confidence            5566778899999999993  44  999999999999999321     1111111 111111110             00


Q ss_pred             CCCCccc--------cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          148 QHKGPWG--------ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       148 ~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                      ..-..|+        ...+...+.+++|+|++. +++++.|+.|++||+++++++..+..|...|.+++|+|++ .|+++
T Consensus       165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~  242 (313)
T 3odt_A          165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC  242 (313)
T ss_dssp             SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred             CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence            0000110        112556799999999988 9999999999999999999999999999999999999998 68899


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.||.|++||+++++.+..+        ..|...|.+++|+|+++ +++++.||.|++||
T Consensus       243 ~~dg~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          243 GEDRTVRIWSKENGSLKQVI--------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             ETTSEEEEECTTTCCEEEEE--------ECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             ecCCEEEEEECCCCceeEEE--------eccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            99999999999999999988        67778999999999998 66789999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-37  Score=244.32  Aligned_cols=214  Identities=10%  Similarity=0.072  Sum_probs=165.0

Q ss_pred             eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           20 EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      .+..+.++|++++|+|    ++++||+|+.||.|++|++.+..                 .+.+..+.+|.++|.+++|+
T Consensus         6 ~~~~~~~~v~~~~~s~----~g~~l~~~~~d~~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~~~~~s   64 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNS----QRTEFVTTTATNQVELYEQDGNG-----------------WKHARTFSDHDKIVTCVDWA   64 (377)
T ss_dssp             EEEECSSCCSCCEECS----SSSEEECCCSSSCBCEEEEETTE-----------------EEECCCBCCCSSCEEEEEEC
T ss_pred             eEecCCCcEEEEEECC----CCCEEEEecCCCEEEEEEccCCc-----------------eEEEEEEecCCceEEEEEEe
Confidence            3455678999999999    99999999999999999998721                 16678888999999999999


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      |+++  +|++++.|+.|++||++..........+.+                      +...|.+++|+|++++|++++.
T Consensus        65 ~~~~--~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~----------------------~~~~v~~~~~~~~~~~l~~~~~  120 (377)
T 3dwl_C           65 PKSN--RIVTCSQDRNAYVYEKRPDGTWKQTLVLLR----------------------LNRAATFVRWSPNEDKFAVGSG  120 (377)
T ss_dssp             TTTC--CEEEEETTSSEEEC------CCCCEEECCC----------------------CSSCEEEEECCTTSSCCEEEES
T ss_pred             CCCC--EEEEEeCCCeEEEEEcCCCCceeeeeEecc----------------------cCCceEEEEECCCCCEEEEEec
Confidence            9998  999999999999999875431112222222                      1224799999999999999999


Q ss_pred             CCeEEEEecCCCc---EEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC----------Cccc
Q 023643          180 DSCAYCWDVESSR---IKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP----------VKDK  245 (279)
Q Consensus       180 d~~i~i~d~~~~~---~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~~~  245 (279)
                      |+.|++||+++++   ....+.. |...|.+++|+|++++|++++.|+.|++||++..+.......          ....
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA  200 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred             CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence            9999999999876   4677777 999999999999999999999999999999864321110000          0001


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          246 QLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+ +|...|.+++|+|++++|++++.||.|++||
T Consensus       201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            12 7888999999999999999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-35  Score=237.59  Aligned_cols=216  Identities=18%  Similarity=0.225  Sum_probs=181.8

Q ss_pred             CCceeeeccccccccceeeeee-cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREI-LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||.|++||+++...  ...... |...|.+++|+|    ++++|++|+.||.|++||+.+                   +
T Consensus       112 d~~v~lw~~~~~~~--~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~dg~i~iwd~~~-------------------~  166 (401)
T 4aez_A          112 ERNVYVWNADSGSV--SALAETDESTYVASVKWSH----DGSFLSVGLGNGLVDIYDVES-------------------Q  166 (401)
T ss_dssp             TTEEEEEETTTCCE--EEEEECCTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------C
T ss_pred             CCeEEEeeCCCCcE--eEeeecCCCCCEEEEEECC----CCCEEEEECCCCeEEEEECcC-------------------C
Confidence            79999999988754  333333 789999999999    899999999999999999988                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|...|.+++|.+  .  +|++++.||.|++||++...  .....+.++                      ..
T Consensus       167 ~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~----------------------~~  218 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWNR--H--VLSSGSRSGAIHHHDVRIAN--HQIGTLQGH----------------------SS  218 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSS--CEEEEEECC----------------------SS
T ss_pred             eEEEEecCCCCceEEEEECC--C--EEEEEcCCCCEEEEecccCc--ceeeEEcCC----------------------CC
Confidence            66777889999999999954  4  99999999999999986421  112222221                      12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEec--CCCeEEEEeCCCCceEE
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGS--EDGTARIWDCKSGKCIK  237 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~--~d~~i~vwd~~~~~~~~  237 (279)
                      .|.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++ .++++++  .|+.|++||+++++.+.
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence            47999999999999999999999999999999999999999999999999975 5666655  79999999999999988


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEE--EcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVR--VRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~wd  279 (279)
                      .+.         +...|.+++|+|++++|++  |+.||.|++||
T Consensus       299 ~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~  333 (401)
T 4aez_A          299 TVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS  333 (401)
T ss_dssp             EEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred             EEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence            873         4467999999999999999  45899999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-35  Score=233.26  Aligned_cols=246  Identities=11%  Similarity=0.033  Sum_probs=184.5

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++............|...|.+++|+|    ++++|++++.||.|++||+......               .
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~~~---------------~  132 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP----NEKKFAVGSGSRVISICYFEQENDW---------------W  132 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT----TSSEEEEEETTSSEEEEEEETTTTE---------------E
T ss_pred             CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC----CCCEEEEEeCCCEEEEEEecCCCcc---------------e
Confidence            48999999998765433444567899999999999    8999999999999999999874210               0


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee-c---cCcccceEEeecCCCCCccccC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL-Q---GNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      .......+|...|.+++|+|++.  +|++++.||.|++||++........... .   ......+..+           .
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  199 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSV--LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-----------S  199 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSS--EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-----------C
T ss_pred             eeeeeecccCCCeeEEEEcCCCC--EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-----------C
Confidence            01223356899999999999998  9999999999999997532111000000 0   0000111111           1


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC--Cc
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS--GK  234 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~--~~  234 (279)
                      .+...|.+++|+|++++|++++.|+.|++||+++++++..+..|...|.+++|+|++.+++++ .|+.|++|+++.  ++
T Consensus       200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~  278 (372)
T 1k8k_C          200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK  278 (372)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence            223358999999999999999999999999999999999999999999999999999988888 899999999987  53


Q ss_pred             e--EEEecC----------------------Ccc------ccc-cCcceeeeEEEEc-CCC---CEEEEEcCcceEEeCC
Q 023643          235 C--IKVIDP----------------------VKD------KQL-KGVISCVSCITLD-ASE---SWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~--~~~~~~----------------------~~~------~~~-~~~~~~v~~~~~~-~~~---~~l~~~~~d~~i~~wd  279 (279)
                      .  +..+..                      ...      ..+ .+|...|++++|. ++|   .+|++|+.||.|++||
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence            1  111100                      000      112 4899999999966 666   9999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=236.18  Aligned_cols=240  Identities=14%  Similarity=0.167  Sum_probs=182.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++.........+..|...|.+++|+|    ++++|++++.||.|++||+.+.                   
T Consensus        62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~-------------------  118 (368)
T 3mmy_A           62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD----DGSKVFTASCDKTAKMWDLSSN-------------------  118 (368)
T ss_dssp             TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTT-------------------
T ss_pred             CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc----CCCEEEEEcCCCcEEEEEcCCC-------------------
Confidence            48999999988643344467888999999999999    8999999999999999999973                   


Q ss_pred             cccccccCCccCeEEEEe--cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCc-------------------cc
Q 023643           81 EPDGFLHGHDGPAYDVKF--YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNH-------------------VK  139 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------------------~~  139 (279)
                      +.+. +..|..+|.+++|  +|++.  +|++++.||.|++||+++....   ..+..+.                   ..
T Consensus       119 ~~~~-~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i  192 (368)
T 3mmy_A          119 QAIQ-IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPM---MVLQLPERCYCADVIYPMAVVATAERGL  192 (368)
T ss_dssp             EEEE-EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCS---EEEECSSCEEEEEEETTEEEEEEGGGCE
T ss_pred             Ccee-eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEE---EEEecCCCceEEEecCCeeEEEeCCCcE
Confidence            3333 4569999999999  77776  9999999999999998764322   1111111                   00


Q ss_pred             ceEEeecCCCCCccccCCCCCCceeEEEcCCCCe----EEEecCCCeEEEEecCCC---cEEEEeecCCc----------
Q 023643          140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA----IFSAAGDSCAYCWDVESS---RIKMVFKGHSD----------  202 (279)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~----------  202 (279)
                      .++++.................+.++.+.++...    +++++.|+.|++||++..   +.+..+..|..          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD  272 (368)
T ss_dssp             EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred             EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence            1111111100000001111233566666655554    999999999999999987   56777777776          


Q ss_pred             --ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          203 --YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       203 --~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                        .|.+++|+|++++|++++.||.|++||+++++++..+        ..|...|++++|+|++++|++++.|+..+.
T Consensus       273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS--------EQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC--------CCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe--------cCCCCCceEEEECCCCCeEEEEeccccccc
Confidence              7999999999999999999999999999999999888        688889999999999999999998875433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-35  Score=236.47  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=173.1

Q ss_pred             cceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc--cCCccC
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL--HGHDGP   92 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~   92 (279)
                      .....+.+|...|.+++|+|    ++ ++|++|+.||.|++||+.+.                   +....+  .+|...
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~~~~h~~~  120 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHP----THPTTVAVGSKGGDIILWDYDVQ-------------------NKTSFIQGMGPGDA  120 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECS----SCTTEEEEEEBTSCEEEEETTST-------------------TCEEEECCCSTTCB
T ss_pred             ceEEeccCCCCCEEEEEECC----CCCCEEEEEcCCCeEEEEeCCCc-------------------ccceeeecCCcCCc
Confidence            34567788999999999999    77 99999999999999999973                   333333  469999


Q ss_pred             eEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643           93 AYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG  171 (279)
Q Consensus        93 v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  171 (279)
                      |.+++|+| ++.  +|++++.|+.|++||++.    .....+....                   .+...|.+++|+|++
T Consensus       121 v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~----~~~~~~~~~~-------------------~~~~~v~~~~~~~~~  175 (383)
T 3ei3_B          121 ITGMKFNQFNTN--QLFVSSIRGATTLRDFSG----SVIQVFAKTD-------------------SWDYWYCCVDVSVSR  175 (383)
T ss_dssp             EEEEEEETTEEE--EEEEEETTTEEEEEETTS----CEEEEEECCC-------------------CSSCCEEEEEEETTT
T ss_pred             eeEEEeCCCCCC--EEEEEeCCCEEEEEECCC----CceEEEeccC-------------------CCCCCeEEEEECCCC
Confidence            99999999 555  999999999999999863    1222221111                   011247999999999


Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCC----CceEEEecCCcccc
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKS----GKCIKVIDPVKDKQ  246 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~~  246 (279)
                      ++|++++.|+.|++||+ +++++..+..|...|.+++|+|+++ +|++++.|+.|++||+++    ++.+..+       
T Consensus       176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------  247 (383)
T 3ei3_B          176 QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------  247 (383)
T ss_dssp             TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-------
T ss_pred             CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-------
Confidence            99999999999999999 5888899999999999999999998 999999999999999998    5555554       


Q ss_pred             ccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          247 LKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       247 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                        +|...|.+++|+| ++.+|++++.|+.|++||
T Consensus       248 --~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          248 --PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             --ECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             --cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence              5778999999999 999999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-35  Score=235.72  Aligned_cols=219  Identities=15%  Similarity=0.181  Sum_probs=182.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++...  .+..+..|...|.+++|++      ++|++|+.||.|++||+...                  .
T Consensus       154 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~------------------~  207 (401)
T 4aez_A          154 GNGLVDIYDVESQT--KLRTMAGHQARVGCLSWNR------HVLSSGSRSGAIHHHDVRIA------------------N  207 (401)
T ss_dssp             TTSCEEEEETTTCC--EEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSS------------------S
T ss_pred             CCCeEEEEECcCCe--EEEEecCCCCceEEEEECC------CEEEEEcCCCCEEEEecccC------------------c
Confidence            48999999988763  4677889999999999965      69999999999999999853                  4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+.+|.+.|.+++|+|++.  +|++++.|+.|++||++..   .....+..+                      ..
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~---~~~~~~~~~----------------------~~  260 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDGL--QLASGGNDNVVQIWDARSS---IPKFTKTNH----------------------NA  260 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCS---SEEEEECCC----------------------SS
T ss_pred             ceeeEEcCCCCCeeEEEEcCCCC--EEEEEeCCCeEEEccCCCC---CccEEecCC----------------------cc
Confidence            55667788999999999999988  9999999999999998642   222222211                      12


Q ss_pred             CceeEEEcCCCC-eEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEE--ecCCCeEEEEeCCCCce
Q 023643          161 ENNAIAVDPQGG-AIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT--GSEDGTARIWDCKSGKC  235 (279)
Q Consensus       161 ~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~--~~~d~~i~vwd~~~~~~  235 (279)
                      .|.+++|+|++. ++++++  .|+.|++||+++++++..+. +...|.+++|+|+++++++  |+.||.|++||+.+++.
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence            479999999776 455544  79999999999999999887 6678999999999999999  55899999999998766


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .....      +.+|...|.+++|+|++++|++++.||.|++||
T Consensus       340 ~~~~~------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          340 TKQVD------IPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEE------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eeEEE------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            65542      168889999999999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.8e-37  Score=241.13  Aligned_cols=223  Identities=16%  Similarity=0.210  Sum_probs=179.6

Q ss_pred             CCceeeeccccccccceeeeee-----cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYRKSILKEREI-----LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      +|.|++||.+....  +..+..     |...|.+++|+|....++.+|++|+.||.|++||+.+                
T Consensus        43 ~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~----------------  104 (366)
T 3k26_A           43 SNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----------------  104 (366)
T ss_dssp             TTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT----------------
T ss_pred             CCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh----------------
Confidence            67899999886542  333332     5678999999993222267999999999999999998                


Q ss_pred             eeeccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                         ++.+..+.+|..+|.+++|+| ++.  +|++++.||.|++||+++..   ....+..                   .
T Consensus       105 ---~~~~~~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~---~~~~~~~-------------------~  157 (366)
T 3k26_A          105 ---MQCIKHYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDT---LVAIFGG-------------------V  157 (366)
T ss_dssp             ---CCEEEEEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTE---EEEEECS-------------------T
T ss_pred             ---ceEeeeecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCe---EEEEecc-------------------c
Confidence               566777889999999999999 777  99999999999999986532   2222210                   0


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee----------------------------cCCcceEEE
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK----------------------------GHSDYLHCI  207 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~~~~~i~~i  207 (279)
                      ..+...|.+++|+|++.+|++++.|+.|++||+++++.+..+.                            .|...|.++
T Consensus       158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  237 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV  237 (366)
T ss_dssp             TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred             ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence            0112248999999999999999999999999999876554433                            389999999


Q ss_pred             EEcCCCcEEEEecCCCeEEEEeCCCCce--------------EEEecCCccccccCcceeeeEEEEcCC--CCEEEEEcC
Q 023643          208 VARNSTNQIVTGSEDGTARIWDCKSGKC--------------IKVIDPVKDKQLKGVISCVSCITLDAS--ESWLVRVRA  271 (279)
Q Consensus       208 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  271 (279)
                      +|+  +++|++++.|+.|++||+++++.              +..+        ..|...|++++|+|+  +++|++|+.
T Consensus       238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF--------DYSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE--------ECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc--------cccCCcEEEEEEcCCCCCcEEEEEec
Confidence            998  78999999999999999988654              4444        678889999999999  999999999


Q ss_pred             cceEEeCC
Q 023643          272 TNYVILFS  279 (279)
Q Consensus       272 d~~i~~wd  279 (279)
                      ||.|++||
T Consensus       308 dg~i~vwd  315 (366)
T 3k26_A          308 VGKLYVWD  315 (366)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=235.42  Aligned_cols=263  Identities=14%  Similarity=0.132  Sum_probs=188.2

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ++.+++|+.+...  ....+.+|.+.|++++|+|.   ++++|++|+.||.|++|++.+......+......      ..
T Consensus        22 ~~~~~v~~~~~~~--~~~~~~~h~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------~~   90 (408)
T 4a11_B           22 ESTRRVLGLELNK--DRDVERIHGGGINTLDIEPV---EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC------SI   90 (408)
T ss_dssp             HHHHHHHTEEECT--TEEECCCCSSCEEEEEECTT---TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE------EE
T ss_pred             cCcceeeccccCc--ceeeeeccCCcEEEEEEecC---CCCEEEEEcCCCeEEEEECCCCcccceEeccccc------cc
Confidence            4568899987764  35667789999999999994   6899999999999999999985433221110000      01


Q ss_pred             ccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCccee--------eec-------------cCccc
Q 023643           82 PDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPI--------NLQ-------------GNHVK  139 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~~~-------------~~~~~  139 (279)
                      ......+|...|.+++|+| ++.  +|++++.||.|++||++.........        ...             .....
T Consensus        91 ~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (408)
T 4a11_B           91 GRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV  168 (408)
T ss_dssp             CTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred             cccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence            1112246999999999999 555  99999999999999987542211110        000             00011


Q ss_pred             ceEEeecCCCCCccccCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCc-EEEEe---------------ecCCc
Q 023643          140 PVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSR-IKMVF---------------KGHSD  202 (279)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~~  202 (279)
                      .++++.  ..........+...|.+++|+|++.. +++++.|+.|++||++++. ++..+               ..|..
T Consensus       169 ~~~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          169 QLCDLK--SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             EEEESS--SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             EEEeCC--CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence            111111  11111122345678999999999984 8899999999999998765 33333               56889


Q ss_pred             ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC---------------------------------------c
Q 023643          203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV---------------------------------------K  243 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---------------------------------------~  243 (279)
                      .|.+++|+|++++|++++.||.|++||+++++....+...                                       .
T Consensus       247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            9999999999999999999999999999876543322110                                       0


Q ss_pred             cccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          244 DKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       244 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ...+.+|...|++++|+|++++|++|+.||.|++||
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~  362 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV  362 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence            123467889999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=244.00  Aligned_cols=246  Identities=13%  Similarity=0.184  Sum_probs=179.2

Q ss_pred             CCCceeeeccccccc---------cceeeeeecc------------cceEEEEECCCCCCCC--CEEEEecCCCcEEEEe
Q 023643            1 MCGDSTNWDEDAYRK---------SILKEREILT------------RTVFRTVWGPSKDGSP--DTIVIASSDGSITSYS   57 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~~~~~~~~~--~~l~~~~~dg~i~iw~   57 (279)
                      .||.|+|||+.....         .....+.+|.            ..|.+++|+|    ++  .+|++++.||+|++|+
T Consensus        48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~----~~~~~~l~s~s~d~~i~iw~  123 (447)
T 3dw8_B           48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP----QKNAAQFLLSTNDKTIKLWK  123 (447)
T ss_dssp             TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC----CCSSSEEEEEECSSCEEEEE
T ss_pred             CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC----CCCcceEEEeCCCCeEEEEe
Confidence            489999999876531         2366778898            8899999999    76  7999999999999999


Q ss_pred             CCCCCcccc-cccCCc------------------cc-ceeeecccccc-ccCCccCeEEEEecCCCCceEEEEeeCCCcE
Q 023643           58 IPSCISKLP-LGLSNS------------------KV-QQLLGIEPDGF-LHGHDGPAYDVKFYGGNEDALLLSCGDDGRI  116 (279)
Q Consensus        58 ~~~~~~~~~-~~~~~~------------------~~-~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  116 (279)
                      +.+...... +.....                  .. .......+... ..+|...|.+++|+|+++  +|+++ .|+.|
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i  200 (447)
T 3dw8_B          124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE--TYLSA-DDLRI  200 (447)
T ss_dssp             EEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--EEEEE-CSSEE
T ss_pred             cccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--EEEEe-CCCeE
Confidence            976332100 000000                  00 00000111223 367999999999999998  99998 79999


Q ss_pred             EEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC-CeEEEecCCCeEEEEecCCCcE--
Q 023643          117 CGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG-GAIFSAAGDSCAYCWDVESSRI--  193 (279)
Q Consensus       117 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--  193 (279)
                      ++||++.............                 .....+...|++++|+|++ .+|++++.|+.|++||+++++.  
T Consensus       201 ~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          201 NLWHLEITDRSFNIVDIKP-----------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             EEEETTEEEEEEEEEECCC-----------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EEEECCCCCceeeeeeccc-----------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999863211111110000                 0111223358999999998 8999999999999999999886  


Q ss_pred             --EEEeecCCc------------ceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEEecCCccccccCcce------
Q 023643          194 --KMVFKGHSD------------YLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKVIDPVKDKQLKGVIS------  252 (279)
Q Consensus       194 --~~~~~~~~~------------~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~------  252 (279)
                        +..+..|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.        +|..      
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~  334 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLC  334 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHH
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--------cccccccccc
Confidence              788888876            8999999999999999999 9999999997 88877774        3432      


Q ss_pred             ---------eeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          253 ---------CVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       253 ---------~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                               .+..++|+|++++|++|+.||.|++||
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence                     133489999999999999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=239.87  Aligned_cols=234  Identities=9%  Similarity=0.133  Sum_probs=181.4

Q ss_pred             eeccccccccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccc
Q 023643            7 NWDEDAYRKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF   85 (279)
Q Consensus         7 iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (279)
                      .|+.++   ..+..+ .+|.+.|++++|+|.   ++.+||+|+.||+|++||+.+......             .+....
T Consensus        47 ~w~~~g---~~~~~~~~~h~~~V~~~~~s~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------~~~~~~  107 (437)
T 3gre_A           47 MGNLRG---KLIATLMENEPNSITSSAVSPG---ETPYLITGSDQGVIKIWNLKEIIVGEV-------------YSSSLT  107 (437)
T ss_dssp             GGGCCC---CEEEEECTTTTSCEEEEEEECS---SSCEEEEEETTSEEEEEEHHHHHTTCC-------------CSCSEE
T ss_pred             cccccc---eEEeeeccCCCCceEEEEECCC---CCCEEEEecCCceEEEeECcccccCcc-------------cceeee
Confidence            577655   446666 789999999999993   688999999999999999875210000             111222


Q ss_pred             ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643           86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI  165 (279)
Q Consensus        86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  165 (279)
                      + +|.++|.+++|+|++.  +|++++.||.|++||++.............+   .+..+......       ....+.++
T Consensus       108 ~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~-------~~~~~~~~  174 (437)
T 3gre_A          108 Y-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKNFG-------KNEYAVRM  174 (437)
T ss_dssp             E-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGGGS-------SCCCEEEE
T ss_pred             c-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccCcc-------cccCceEE
Confidence            2 4899999999999988  9999999999999998532222333322222   22222211100       12236677


Q ss_pred             E--EcCCCCeEEEecCCCeEEEEecCCCcEEEEeec--CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          166 A--VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG--HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       166 ~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .  +++++.+|++++.|+.|++||+++++++..+..  |...|++++|+|++++|++|+.||.|++||+++++++..+. 
T Consensus       175 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  253 (437)
T 3gre_A          175 RAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-  253 (437)
T ss_dssp             EEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-
Confidence            7  668899999999999999999999999999998  88999999999999999999999999999999999998874 


Q ss_pred             CccccccCcceeeeEEEEc----CCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITLD----ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~~wd  279 (279)
                            ..|...|.+++|+    |++.+|++|+.||.|++||
T Consensus       254 ------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          254 ------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             ------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             ------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence                  2677799999665    5688999999999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=233.49  Aligned_cols=209  Identities=17%  Similarity=0.274  Sum_probs=174.4

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV   96 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   96 (279)
                      .+..+.+|...|.+++|+|    ++++||+|+.||.|++|++....                 .+.+..+.+|.++|.++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~~~   61 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGET-----------------HKLIDTLTGHEGPVWRV   61 (379)
T ss_dssp             --CCEEECCCCEEEEEECS----SSSEEEEEETTSCEEEEEEETTE-----------------EEEEEEECCCSSCEEEE
T ss_pred             ccEEecCCcccEEEEEEcC----CCCEEEEEECCCcEEEEecCCCc-----------------ceeeeEecCCCCcEEEE
Confidence            3567889999999999999    89999999999999999997421                 45667788999999999


Q ss_pred             EecCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CC
Q 023643           97 KFYGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GG  172 (279)
Q Consensus        97 ~~~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~  172 (279)
                      +|+|+  +.  +|++++.||.|++||++... ......+..                      +...|.+++|+|+  +.
T Consensus        62 ~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~----------------------~~~~v~~~~~~~~~~~~  116 (379)
T 3jrp_A           62 DWAHPKFGT--ILASCSYDGKVLIWKEENGR-WSQIAVHAV----------------------HSASVNSVQWAPHEYGP  116 (379)
T ss_dssp             EECCGGGCS--EEEEEETTSCEEEEEEETTE-EEEEEEECC----------------------CSSCEEEEEECCGGGCS
T ss_pred             EeCCCCCCC--EEEEeccCCEEEEEEcCCCc-eeEeeeecC----------------------CCcceEEEEeCCCCCCC
Confidence            99987  66  99999999999999986431 001111111                      1124799999999  89


Q ss_pred             eEEEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCceE-
Q 023643          173 AIFSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARN-------------STNQIVTGSEDGTARIWDCKSGKCI-  236 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~d~~i~vwd~~~~~~~-  236 (279)
                      +|++++.|+.|++||++++  .....+..|...|.+++|+|             ++.+|++++.||.|++||+++++.. 
T Consensus       117 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  196 (379)
T 3jrp_A          117 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY  196 (379)
T ss_dssp             EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred             EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence            9999999999999999887  34556778999999999999             6999999999999999999876533 


Q ss_pred             ---EEecCCccccccCcceeeeEEEEcCC---CCEEEEEcCcceEEeCC
Q 023643          237 ---KVIDPVKDKQLKGVISCVSCITLDAS---ESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd  279 (279)
                         ..+        .+|...|.+++|+|+   +.+|++++.||.|++||
T Consensus       197 ~~~~~~--------~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          197 VLESTL--------EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             EEEEEE--------CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             eeEEEE--------ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence               344        688899999999999   89999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-36  Score=233.83  Aligned_cols=226  Identities=9%  Similarity=-0.022  Sum_probs=170.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||++..+.  +..+.  ...|.++.|+|    +   +++++.|++|++|+.........  ...        .
T Consensus        56 ~Dg~v~iwd~~~~~~--~~~~~--~~~v~~~~~~~----~---~~s~s~D~~i~~w~~~~~~~~~~--~~~--------~  114 (343)
T 3lrv_A           56 EDGALHFTQLKDSKT--ITTIT--TPNPRTGGEHP----A---IISRGPCNRLLLLYPGNQITILD--SKT--------N  114 (343)
T ss_dssp             ETTEEEEEEESSSSC--EEEEE--EECCCTTCCCC----S---EEEECSTTEEEEEETTTEEEEEE--TTT--------C
T ss_pred             CCCcEEEEECCCCcE--EEEEe--cCCceeeeeCC----c---eEEecCCCeEEEEEccCceEEee--cCC--------c
Confidence            389999999887643  33333  46788889999    5   99999999999998875210000  000        1


Q ss_pred             cccccc-cCCccCeEEEEecC--CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           81 EPDGFL-HGHDGPAYDVKFYG--GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        81 ~~~~~~-~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                      +.+..+ .+|.++|.+++|+|  +++  +|++++.||+|++||+++...   ......++.                   
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~-------------------  170 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQ---YIVHSAKSD-------------------  170 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCE---EEEECCCSS-------------------
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcE---EEEEecCCC-------------------
Confidence            212222 25778999999999  887  999999999999999875322   111111111                   


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE-EEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK-MVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                        ..+.+++|+|++.+|++|+.|+.|++||+++++.+ ..+.. |.++|++++|+|++.+|++++ |+.|++||+++++.
T Consensus       171 --~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          171 --VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG  247 (343)
T ss_dssp             --CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred             --CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence              13789999999999999999999999999999887 78888 999999999999999999999 55999999999887


Q ss_pred             EEEecCCccccccCcceeee--EEEEcCCCCEEEEEcC-cceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVS--CITLDASESWLVRVRA-TNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-d~~i~~wd  279 (279)
                      ...+...     ..|...+.  +++|+|++++|++++. |+.+++|+
T Consensus       248 ~~~~~~~-----~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          248 TLAYPTY-----TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             CBSSCCC-----BC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ceeeccc-----ccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence            7665432     22333343  6999999999999988 99999994

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2e-35  Score=255.80  Aligned_cols=220  Identities=15%  Similarity=0.244  Sum_probs=191.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+.+.  ..+..+..|..+|.+++|+|    ++++|++++.||.|++||+.+                   +
T Consensus        33 ~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~-------------------~   87 (814)
T 3mkq_A           33 YSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNT-------------------G   87 (814)
T ss_dssp             TTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTT-------------------C
T ss_pred             CCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeC----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence            3799999998776  34777888999999999999    899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|.+.|.+++|+|+++  +|++++.||.|++|+++...  .....+.++                      ..
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~----------------------~~  141 (814)
T 3mkq_A           88 EKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNW--ALEQTFEGH----------------------EH  141 (814)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTS--EEEEEEECC----------------------SS
T ss_pred             cEEEEEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCc--eEEEEEcCC----------------------CC
Confidence            66777888999999999999998  99999999999999986421  111222211                      11


Q ss_pred             CceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeecCC-cceEEEEEcC--CCcEEEEecCCCeEEEEeCCCCceE
Q 023643          161 ENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-DYLHCIVARN--STNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       161 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      .|.+++|+| ++..+++++.|+.|++||+.+++....+..+. ..+.+++|+|  ++.+|++++.||.|++||+++++.+
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  221 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            378999999 88899999999999999999888777776655 8899999999  8999999999999999999999998


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+        .+|...|.+++|+|++++|++++.||.|++||
T Consensus       222 ~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd  256 (814)
T 3mkq_A          222 ATL--------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (814)
T ss_dssp             EEE--------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEE--------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            888        67888999999999999999999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.9e-34  Score=232.92  Aligned_cols=212  Identities=22%  Similarity=0.402  Sum_probs=181.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.+  .+..+.+|...|.+++|.      +++|++|+.||+|++||+.+                   +
T Consensus       151 ~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~-------------------~  203 (435)
T 1p22_A          151 RDNTIKIWDKNTLE--CKRILTGHTGSVLCLQYD------ERVIITGSSDSTVRVWDVNT-------------------G  203 (435)
T ss_dssp             SSSCEEEEESSSCC--EEEEECCCSSCEEEEECC------SSEEEEEETTSCEEEEESSS-------------------C
T ss_pred             CCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEEC------CCEEEEEcCCCeEEEEECCC-------------------C
Confidence            48999999988764  467788999999999984      47999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|...|.+++|++  .  ++++++.||.|++||++............++                      ..
T Consensus       204 ~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------------------~~  257 (435)
T 1p22_A          204 EMLNTLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH----------------------RA  257 (435)
T ss_dssp             CEEEEECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC----------------------SS
T ss_pred             cEEEEEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC----------------------CC
Confidence            66778889999999999974  3  8999999999999998754322211222221                      12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.+++|  +++++++|+.|+.|++||+++++.+..+.+|...|.+++++  ++++++|+.||.|++||+++++++..+ 
T Consensus       258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~-  332 (435)
T 1p22_A          258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-  332 (435)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-
T ss_pred             cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE-
Confidence            3688888  67899999999999999999999999999999999999994  789999999999999999999999998 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|...|.+++|  ++.+|++|+.||.|++||
T Consensus       333 -------~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd  362 (435)
T 1p22_A          333 -------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWD  362 (435)
T ss_dssp             -------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             -------eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEE
Confidence                   688889999999  789999999999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=6.3e-35  Score=221.29  Aligned_cols=243  Identities=11%  Similarity=0.035  Sum_probs=159.6

Q ss_pred             Cceeeeccccc-cccceeeeeecccceEEEEECCCC---------------------CCC----CCEEEEecCCCcEEEE
Q 023643            3 GDSTNWDEDAY-RKSILKEREILTRTVFRTVWGPSK---------------------DGS----PDTIVIASSDGSITSY   56 (279)
Q Consensus         3 G~v~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~~----~~~l~~~~~dg~i~iw   56 (279)
                      ..|++|++... +.+.+.++.+|..+|..+.+.|+.                     +++    ++.+++++.+  +++|
T Consensus        63 ~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~  140 (356)
T 2w18_A           63 DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVL  140 (356)
T ss_dssp             SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEE
T ss_pred             ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEE
Confidence            57899997665 234566777776555444444410                     126    7777776642  4455


Q ss_pred             eCCCCCcccccccCCcccceeee----ccccccccCCccCeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCccee
Q 023643           57 SIPSCISKLPLGLSNSKVQQLLG----IEPDGFLHGHDGPAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPI  131 (279)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  131 (279)
                      ++.++.............-..+.    ++.+..+.+|...+..++|+| ++.+.+|++++.|++|+|||+++.   +...
T Consensus       141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~  217 (356)
T 2w18_A          141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG---QLLK  217 (356)
T ss_dssp             EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC---CEEE
T ss_pred             ecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC---cEEE
Confidence            55432211110000000000110    455566678888899999998 332239999999999999998754   3444


Q ss_pred             eeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE------------EEecCCCeEEEEecCCCcEEEEe--
Q 023643          132 NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI------------FSAAGDSCAYCWDVESSRIKMVF--  197 (279)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~--  197 (279)
                      .+.+++...                   ..+.+++|+|++.++            ++|+.|++|++||..+++.+..+  
T Consensus       218 tL~g~~~~v-------------------~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          218 KMHIDDSYQ-------------------ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             EEECCC----------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCcce-------------------eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            444322110                   125778899988876            56788999999999999888765  


Q ss_pred             ---ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeee-EEEEcCCCCEEEEEcCcc
Q 023643          198 ---KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS-CITLDASESWLVRVRATN  273 (279)
Q Consensus       198 ---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~  273 (279)
                         .+|...+.+..++  +.++++++.|++|+|||+.+++++.++        .+|...+. .++|+|||++|++|+.|+
T Consensus       279 ~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL--------~gH~~~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          279 CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALL--------PPVSDQHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEE--------CCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred             eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEe--------cCCCCCeEEEEEECCCCCEEEEEECCC
Confidence               3666655544444  789999999999999999999999999        56766544 689999999999999999


Q ss_pred             eEEeCC
Q 023643          274 YVILFS  279 (279)
Q Consensus       274 ~i~~wd  279 (279)
                      +|+|||
T Consensus       349 TIklWd  354 (356)
T 2w18_A          349 NIFVYH  354 (356)
T ss_dssp             CEEEEE
T ss_pred             cEEEec
Confidence            999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-34  Score=259.40  Aligned_cols=221  Identities=13%  Similarity=0.161  Sum_probs=187.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||..+..  .+..+.+|...|.+++|+|    ++++|++++.||+|++||+.+                   +
T Consensus       635 ~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~-------------------~  689 (1249)
T 3sfz_A          635 ADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSS----DDSYIATCSADKKVKIWDSAT-------------------G  689 (1249)
T ss_dssp             TTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-------------------C
T ss_pred             CCCeEEEEECCCCC--EEEEeccCCCCEEEEEEec----CCCEEEEEeCCCeEEEEECCC-------------------C
Confidence            48999999988774  4777889999999999999    899999999999999999998                   6


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|...|.+++|+|++...++++++.|+.|++||+++.   .....+.++.                      .
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~---~~~~~~~~h~----------------------~  744 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK---ECRNTMFGHT----------------------N  744 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS---SEEEEECCCS----------------------S
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc---chhheecCCC----------------------C
Confidence            77788889999999999999654458999999999999998653   2222222211                      1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-------------------------------------------
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-------------------------------------------  197 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------  197 (279)
                      .|++++|+|+++++++++.||.|++||+++++....+                                           
T Consensus       745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            3678888888888888888888888887765443322                                           


Q ss_pred             -----------e-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCE
Q 023643          198 -----------K-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW  265 (279)
Q Consensus       198 -----------~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  265 (279)
                                 . +|...+.+++|+|+++++++++.||.|++||+.+++.+..+        .+|...|.+++|+|++++
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~h~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--------RGHLSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSE
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec--------CCCccceEEEEECCCCCE
Confidence                       1 67788999999999999999999999999999999999888        788999999999999999


Q ss_pred             EEEEcCcceEEeCC
Q 023643          266 LVRVRATNYVILFS  279 (279)
Q Consensus       266 l~~~~~d~~i~~wd  279 (279)
                      |++++.||.|++||
T Consensus       897 l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          897 FLTASDDQTIRVWE  910 (1249)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEEeCCCeEEEEE
Confidence            99999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-34  Score=226.75  Aligned_cols=203  Identities=13%  Similarity=0.143  Sum_probs=175.2

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      ...+.+|...|++++|+|    ++++|++++.||.|++||+.+                   ++.+..+.+|...|.+++
T Consensus        25 ~~~l~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~vwd~~~-------------------~~~~~~~~~h~~~v~~~~   81 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNK----EGDLLFSCSKDSSASVWYSLN-------------------GERLGTLDGHTGTIWSID   81 (369)
T ss_dssp             EEEEECCSSCEEEEEECT----TSCEEEEEESSSCEEEEETTT-------------------CCEEEEECCCSSCEEEEE
T ss_pred             cEEEEEeeceEEEEEEcC----CCCEEEEEeCCCEEEEEeCCC-------------------chhhhhhhhcCCcEEEEE
Confidence            446789999999999999    899999999999999999988                   566778889999999999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |+|+++  +|++++.||.|++||+++..   ....+..                       ...+.+++|+|++++++++
T Consensus        82 ~~~~~~--~l~s~~~dg~i~iwd~~~~~---~~~~~~~-----------------------~~~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           82 VDCFTK--YCVTGSADYSIKLWDVSNGQ---CVATWKS-----------------------PVPVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             ECTTSS--EEEEEETTTEEEEEETTTCC---EEEEEEC-----------------------SSCEEEEEECTTSSEEEEE
T ss_pred             EcCCCC--EEEEEeCCCeEEEEECCCCc---EEEEeec-----------------------CCCeEEEEEccCCCEEEEe
Confidence            999998  99999999999999986532   1111110                       1137899999999999999


Q ss_pred             cCC-----CeEEEEecCCCc-----------EEEEeecCCc--ceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEE
Q 023643          178 AGD-----SCAYCWDVESSR-----------IKMVFKGHSD--YLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKV  238 (279)
Q Consensus       178 ~~d-----~~i~i~d~~~~~-----------~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~  238 (279)
                      +.+     +.|++||+....           ....+..|..  .+.+++|+|++++|++++.||.|++||+++ ++.+..
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  213 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS  213 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE
Confidence            998     999999997653           3344555665  899999999999999999999999999998 677777


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +        ..|...|.+++|+|++++|++++.|+.|++||
T Consensus       214 ~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d  246 (369)
T 3zwl_B          214 I--------DLHEKSISDMQFSPDLTYFITSSRDTNSFLVD  246 (369)
T ss_dssp             E--------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             E--------ecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence            7        67888999999999999999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.1e-34  Score=225.35  Aligned_cols=233  Identities=10%  Similarity=0.050  Sum_probs=179.4

Q ss_pred             CCCceeeecccccc-ccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeC-CCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYR-KSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSI-PSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~   77 (279)
                      .||.|++|+++... .........|...|.+++|+|    +++ +|++|+.||.|++|++ .+.                
T Consensus        31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~----------------   90 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID----NTDLQIYVGTVQGEILKVDLIGSP----------------   90 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE----SSSEEEEEEETTSCEEEECSSSSS----------------
T ss_pred             CCCeEEEEEeCCCCccccceeeeecCCceEEEEECC----CCCcEEEEEcCCCeEEEEEeccCC----------------
Confidence            48999999987654 112445568999999999999    899 9999999999999999 762                


Q ss_pred             eeccccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           78 LGIEPDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        78 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                          ....+.+  |...|.+++|+| +.  +|++++.|+.|++||++.........  ...               ....
T Consensus        91 ----~~~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~---------------~~~~  146 (342)
T 1yfq_A           91 ----SFQALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAV--KNL---------------NSNN  146 (342)
T ss_dssp             ----SEEECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEE--EES---------------CSSS
T ss_pred             ----ceEeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccc--cCC---------------eeeE
Confidence                2255667  999999999999 76  99999999999999986411100000  000               0000


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-Cc--EEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SR--IKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~--~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~  231 (279)
                      ..+...+.+++|+|++  +++++.|+.|++||+++ +.  .......|...+.+++|+| +++++++++.||.|++|+++
T Consensus       147 ~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            1122348999999886  99999999999999998 54  3344556888999999999 99999999999999999998


Q ss_pred             CC------ceEEEecCCccc-cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 SG------KCIKVIDPVKDK-QLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~------~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..      +....+..+... .-..|...|.+++|+|++++|++++.||.|++||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            76      777777432200 0012345999999999999999999999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-34  Score=232.12  Aligned_cols=208  Identities=14%  Similarity=0.132  Sum_probs=169.0

Q ss_pred             cccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCC--CCCcccccccCCcccceeeecccccccc--CCccCeEEEEe
Q 023643           24 LTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIP--SCISKLPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKF   98 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~   98 (279)
                      |.+.|.+++|+|    ++++| ++++.||.|++|++.  +                   ++.+..+.  .|...|.+++|
T Consensus       101 ~~~~v~~~~~s~----d~~~l~~~~~~dg~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B          101 IYSYIRNLRLTS----DESRLIACADSDKSLLVFDVDKTS-------------------KNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             CCCCEEEEEECT----TSSEEEEEEGGGTEEEEEEECSSS-------------------SSCEEEEEEEECSSCEEEEEE
T ss_pred             cCCceEEEEEcC----CCCEEEEEECCCCeEEEEECcCCC-------------------CceeeeeecccCCCCceEEEE
Confidence            444799999999    89986 899999999999998  5                   34445554  56788999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCc-ceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC---CCeE
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESK-VPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ---GGAI  174 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l  174 (279)
                      +|++.  +|++++.||.|++|++.+..... ....+.+                      +...|++++|+|+   +++|
T Consensus       158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------------------h~~~v~~~~~sp~~~~~~~l  213 (450)
T 2vdu_B          158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILG----------------------HVSMLTDVHLIKDSDGHQFI  213 (450)
T ss_dssp             CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------------------CSSCEEEEEEEECTTSCEEE
T ss_pred             cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeec----------------------ccCceEEEEEcCCCCCCcEE
Confidence            99998  99999999999999987543322 1111111                      1124799999999   8899


Q ss_pred             EEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc--------
Q 023643          175 FSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK--------  245 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------  245 (279)
                      ++++.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+......        
T Consensus       214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          214 ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            9999999999999999988887 55899999999999 9999999999999999999999988887532100        


Q ss_pred             ---------cccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          246 ---------QLKGVISCVSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       246 ---------~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                               ........|.+++|+|++++|++++ .|+.|++|+
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence                     0002345789999999999999998 899999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-35  Score=236.17  Aligned_cols=236  Identities=16%  Similarity=0.206  Sum_probs=179.8

Q ss_pred             CCCceeeecccc---cc-ccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC---CCCcccccccCCcc
Q 023643            1 MCGDSTNWDEDA---YR-KSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP---SCISKLPLGLSNSK   73 (279)
Q Consensus         1 ~dG~v~iw~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~   73 (279)
                      .||.|++||++.   .. ......+ .|...|.+++|+|    ++++|++|+.||+|++||+.   ++.......     
T Consensus        84 ~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----  153 (437)
T 3gre_A           84 DQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN-----  153 (437)
T ss_dssp             TTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-----
T ss_pred             CCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC----CCCEEEEEeCCCEEEEEEeccccCCceeeccc-----
Confidence            489999999876   22 1112222 5899999999999    89999999999999999995   221111000     


Q ss_pred             cceeeeccccccc--cC--CccCeEEEE--ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC-cccceEEeec
Q 023643           74 VQQLLGIEPDGFL--HG--HDGPAYDVK--FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN-HVKPVLDLVN  146 (279)
Q Consensus        74 ~~~~~~~~~~~~~--~~--h~~~v~~~~--~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~  146 (279)
                            ...+..+  ..  +...+.++.  +++++.  +|++++.|+.|++||+++.   .....+... +.        
T Consensus       154 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~h~--------  214 (437)
T 3gre_A          154 ------CECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNLSRVIIFDIRTL---ERLQIIENSPRH--------  214 (437)
T ss_dssp             ------EEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETTSEEEEEETTTC---CEEEEEECCGGG--------
T ss_pred             ------cceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCC---eeeEEEccCCCC--------
Confidence                  1111111  12  566777877  446665  9999999999999998653   222233221 11        


Q ss_pred             CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcC----CCcEEEEecC
Q 023643          147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARN----STNQIVTGSE  221 (279)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~----~~~~l~~~~~  221 (279)
                                   ..|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|.+++|+|    ++.+|++++.
T Consensus       215 -------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          215 -------------GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             -------------CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             -------------CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence                         137999999999999999999999999999999999886 7888999996654    6789999999


Q ss_pred             CCeEEEEeCCCCceEEEecCCccc----------------cccC--cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          222 DGTARIWDCKSGKCIKVIDPVKDK----------------QLKG--VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       222 d~~i~vwd~~~~~~~~~~~~~~~~----------------~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ||.|++||+++++++..+..+...                .+.+  |...|++++|+ ++++|++|+.|+.|++||
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS  356 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence            999999999999998888754311                1223  78889999999 789999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.3e-34  Score=227.11  Aligned_cols=242  Identities=11%  Similarity=0.090  Sum_probs=183.8

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      .....+.+|.+.|++++|+|      ++|++|+.||.|++|++.+......             ......+.+|..+|.+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h~~~v~~   67 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVHKSGLHH   67 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECCTTCEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecCCCcEEE
Confidence            34556788999999999988      6999999999999999987421111             1255677789999999


Q ss_pred             EEecCC----C---CceEEEEeeCCCcEEEeecCCCccCcc--eeeeccCc----ccc----------------------
Q 023643           96 VKFYGG----N---EDALLLSCGDDGRICGWRWKEFTESKV--PINLQGNH----VKP----------------------  140 (279)
Q Consensus        96 ~~~~~~----~---~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~----~~~----------------------  140 (279)
                      ++|+|+    +   .  +|++++.||.|++|+++.......  ...+..+.    ...                      
T Consensus        68 ~~~~~~~~~~g~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~  145 (397)
T 1sq9_A           68 VDVLQAIERDAFELC--LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD  145 (397)
T ss_dssp             EEEEEEEETTTEEEE--EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred             EEEecccccCCcccc--EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe
Confidence            999999    7   7  999999999999999875432000  11111110    111                      


Q ss_pred             ------eEEeec------CCCCC-----cccc-----CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643          141 ------VLDLVN------HQHKG-----PWGA-----LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       141 ------~~~~~~------~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  198 (279)
                            ++++..      .....     .+..     ..+...|.+++|+|++ ++++++.|+.|++||+++++++..+.
T Consensus       146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  224 (397)
T 1sq9_A          146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE  224 (397)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence                  111111      01100     1100     2245679999999999 99999999999999999999999999


Q ss_pred             c---C---CcceEEEEEcCCCcEEEEecCC---CeEEEEeCCCCceEEEecCCcc-----ccccCcceeeeEEEEcCCCC
Q 023643          199 G---H---SDYLHCIVARNSTNQIVTGSED---GTARIWDCKSGKCIKVIDPVKD-----KQLKGVISCVSCITLDASES  264 (279)
Q Consensus       199 ~---~---~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~  264 (279)
                      .   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+.....     .....|...|.+++|+|+++
T Consensus       225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  304 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  304 (397)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             ccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence            8   8   9999999999999999999999   9999999999999988832100     00001888999999999999


Q ss_pred             EEEEEcCcceEEeCC
Q 023643          265 WLVRVRATNYVILFS  279 (279)
Q Consensus       265 ~l~~~~~d~~i~~wd  279 (279)
                      +|++++.||.|++||
T Consensus       305 ~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          305 TLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EEEEEETTSEEEEEE
T ss_pred             EEEEEeCCCeEEEEE
Confidence            999999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.3e-34  Score=238.74  Aligned_cols=242  Identities=15%  Similarity=0.182  Sum_probs=193.2

Q ss_pred             CCCceeeeccccccccceeeeeeccc---ceEEEEECCCCCCC-CCEEEEecCCCcEEEEeCCCCCcccccccCCcccce
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTR---TVFRTVWGPSKDGS-PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      .||.|++||.+..+  .+..+..|..   .|.+++|+|    + +++|++++.||.|++||+.+                
T Consensus       181 ~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~----------------  238 (615)
T 1pgu_A          181 DDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP----DSGEFVITVGSDRKISCFDGKS----------------  238 (615)
T ss_dssp             TTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS----TTCCEEEEEETTCCEEEEETTT----------------
T ss_pred             CCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC----CCCCEEEEEeCCCeEEEEECCC----------------
Confidence            37899999987764  4677888988   999999999    8 99999999999999999987                


Q ss_pred             eeeccccccc-c---CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce----------------------
Q 023643           77 LLGIEPDGFL-H---GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP----------------------  130 (279)
Q Consensus        77 ~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------------------  130 (279)
                         ++.+..+ .   .|..+|.+++|+ ++.  +|++++.|+.|++||+++.......                      
T Consensus       239 ---~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  312 (615)
T 1pgu_A          239 ---GEFLKYIEDDQEPVQGGIFALSWL-DSQ--KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI  312 (615)
T ss_dssp             ---CCEEEECCBTTBCCCSCEEEEEES-SSS--EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred             ---CCEeEEecccccccCCceEEEEEc-CCC--EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeE
Confidence               4555666 5   799999999999 777  9999999999999998753211000                      


Q ss_pred             --------------------eeeccC--------------------------------cccceEEeec------------
Q 023643          131 --------------------INLQGN--------------------------------HVKPVLDLVN------------  146 (279)
Q Consensus       131 --------------------~~~~~~--------------------------------~~~~~~~~~~------------  146 (279)
                                          ..+.++                                +...+..+..            
T Consensus       313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d  392 (615)
T 1pgu_A          313 ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD  392 (615)
T ss_dssp             EEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETT
T ss_pred             EEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCC
Confidence                                000000                                0000000000            


Q ss_pred             -------------------------------------------------------------------------CCCCCc-
Q 023643          147 -------------------------------------------------------------------------HQHKGP-  152 (279)
Q Consensus       147 -------------------------------------------------------------------------~~~~~~-  152 (279)
                                                                                               ...-.. 
T Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~  472 (615)
T 1pgu_A          393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF  472 (615)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE
Confidence                                                                                     000000 


Q ss_pred             ---------cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcC----------C
Q 023643          153 ---------WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARN----------S  212 (279)
Q Consensus       153 ---------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~----------~  212 (279)
                               .....+...|++++|+|++++|++++.|+.|++||+.+++.+..+.+ |...|++++|+|          +
T Consensus       473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~  552 (615)
T 1pgu_A          473 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  552 (615)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             ECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence                     11233556799999999999999999999999999999999999988 999999999999          9


Q ss_pred             CcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          213 TNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       213 ~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++|++++.||.|++||+.++ +++..+        .+|...|++++|+|+++ |++++.||.|++||
T Consensus       553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          553 EDLVATGSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCceechhh--------hcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence            999999999999999999997 677776        78899999999999999 99999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=231.60  Aligned_cols=243  Identities=15%  Similarity=0.175  Sum_probs=168.2

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc------------
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD------------   90 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------   90 (279)
                      .+.+.|++++|+|    ++++||+|+.||.|+||++.+.........        ...+....+.+|.            
T Consensus        26 ~~~~~V~~v~~s~----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~   93 (447)
T 3dw8_B           26 AEADIISTVEFNH----SGELLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIE   93 (447)
T ss_dssp             CGGGSEEEEEECS----SSSEEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEEC
T ss_pred             cccCcEEEEEECC----CCCEEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEeccccccccccccccccccc
Confidence            3678999999999    999999999999999999987431100000        0022456777887            


Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcc------------cceEE---eecCCCCCcccc
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHV------------KPVLD---LVNHQHKGPWGA  155 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~------------~~~~~---~~~~~~~~~~~~  155 (279)
                      ++|.+++|+|++...+|++++.|++|++|++..............+..            .+...   ............
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999997212899999999999999865321100000000000            00000   000000000001


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCC-CcEEE-------EeecCCcceEEEEEcCCC-cEEEEecCCCeEE
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVES-SRIKM-------VFKGHSDYLHCIVARNST-NQIVTGSEDGTAR  226 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-------~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~  226 (279)
                      ..+...|.+++|+|++++|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ ++|++|+.||.|+
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            2344568999999999999998 799999999984 44444       256799999999999998 9999999999999


Q ss_pred             EEeCCCCce----EEEecCCcc----ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          227 IWDCKSGKC----IKVIDPVKD----KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       227 vwd~~~~~~----~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +||+++++.    ...+..+..    ..+..|...|.+++|+|++++|++++. +.|++||
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWD  312 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEE
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEe
Confidence            999999886    666632210    001112238999999999999999999 9999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=216.52  Aligned_cols=225  Identities=19%  Similarity=0.220  Sum_probs=183.3

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      .....+.+|.+.|.+++| |    ++.+|++++.||.|++||+.+                   .+....+..|...|.+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~-------------------~~~~~~~~~~~~~v~~   64 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDD-------------------QWLGTVVYTGQGFLNS   64 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESS-------------------SEEEEEEEECSSCEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCC-------------------CEEEEEeecCCccEEE
Confidence            456788999999999999 8    899999999999999999987                   5556677789999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC-----------------CCCCccccCCC
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH-----------------QHKGPWGALSP  158 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~  158 (279)
                      ++|+|++.  +|++++.||.|++|++...........+.+ +...+..+...                 ..........+
T Consensus        65 ~~~~~~~~--~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  141 (313)
T 3odt_A           65 VCYDSEKE--LLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAH  141 (313)
T ss_dssp             EEEETTTT--EEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECC
T ss_pred             EEECCCCC--EEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccC
Confidence            99999998  999999999999999876544333333332 22222222111                 01111112335


Q ss_pred             CCCceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          159 VPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       159 ~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      ...+.++.|.| ++..+++++.|+.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++.+
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh
Confidence            56789999988 889999999999999999  4667777777 899999999999988 999999999999999999999


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+        ..|...|.+++|+|++ .|++++.||.|++||
T Consensus       219 ~~~--------~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd  252 (313)
T 3odt_A          219 RTY--------EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWS  252 (313)
T ss_dssp             EEE--------ECCSSCEEEEEECTTS-CEEEEETTSEEEEEC
T ss_pred             hhh--------hcCCceEEEEEEecCC-CEEEEecCCEEEEEE
Confidence            888        6788899999999999 599999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-33  Score=221.61  Aligned_cols=216  Identities=14%  Similarity=0.109  Sum_probs=172.2

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ..+.+|.+.|++++|+|    ++++||+|+.||.|++|++.+....               .+....+.+|..+|.+++|
T Consensus         5 ~~~~gH~~~v~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~   65 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDF----YGRHVATCSSDQHIKVFKLDKDTSN---------------WELSDSWRAHDSSIVAIDW   65 (351)
T ss_dssp             CEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEEECSSSCC---------------EEEEEEEECCSSCEEEEEE
T ss_pred             ccCcccccceeEEEEcC----CCCEEEEeeCCCeEEEEECCCCCCc---------------ceecceeccCCCcEEEEEE
Confidence            34678999999999999    8999999999999999999863211               2345667889999999999


Q ss_pred             cC--CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeE
Q 023643           99 YG--GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAI  174 (279)
Q Consensus        99 ~~--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l  174 (279)
                      +|  ++.  +|++++.||.|++||++........     .....+..+.           .+...|.+++|+|+  +.++
T Consensus        66 ~~~~d~~--~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           66 ASPEYGR--IIASASYDKTVKLWEEDPDQEECSG-----RRWNKLCTLN-----------DSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             CCGGGCS--EEEEEETTSCEEEEEECTTSCTTSS-----CSEEEEEEEC-----------CCSSCEEEEEECCGGGCSEE
T ss_pred             cCCCCCC--EEEEEcCCCeEEEEecCCCcccccc-----cCcceeeeec-----------ccCCceeEEEEcCCCCCcEE
Confidence            99  466  9999999999999998754321100     0001111111           11224899999999  9999


Q ss_pred             EEecCCCeEEEEecCCCcEEEEee-------------cCCcceEEEEEcCC---CcEEEEecCCCeEEEEeCCCCce--E
Q 023643          175 FSAAGDSCAYCWDVESSRIKMVFK-------------GHSDYLHCIVARNS---TNQIVTGSEDGTARIWDCKSGKC--I  236 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd~~~~~~--~  236 (279)
                      ++++.|+.|++||+++++.+..+.             .|...+.+++|+|+   +.++++++.++.+.+|+...++.  +
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            999999999999999876544332             57788999999997   89999999999998888877765  4


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCC----CEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASE----SWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~wd  279 (279)
                      ..+        .+|...|++++|+|++    ++|++|+.||.|++||
T Consensus       208 ~~~--------~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          208 AKL--------PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             EEC--------CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             eec--------CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence            444        6888999999999998    8999999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-33  Score=228.22  Aligned_cols=212  Identities=20%  Similarity=0.365  Sum_probs=177.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.+  .+..+..|...|.+++|++      .++++|+.||.|++||+.+...                .
T Consensus       191 ~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~----------------~  246 (435)
T 1p22_A          191 SDSTVRVWDVNTGE--MLNTLIHHCEAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTD----------------I  246 (435)
T ss_dssp             TTSCEEEEESSSCC--EEEEECCCCSCEEEEECCT------TEEEEEETTSCEEEEECSSSSC----------------C
T ss_pred             CCCeEEEEECCCCc--EEEEEcCCCCcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCC----------------c
Confidence            48999999998774  4777888999999999987      5999999999999999987321                1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .....+.+|...|.+++|  +++  +|++++.||.|++||+++.   .....+.++.                      .
T Consensus       247 ~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~----------------------~  297 (435)
T 1p22_A          247 TLRRVLVGHRAAVNVVDF--DDK--YIVSASGDRTIKVWNTSTC---EFVRTLNGHK----------------------R  297 (435)
T ss_dssp             EEEEEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------S
T ss_pred             eeeeEecCCCCcEEEEEe--CCC--EEEEEeCCCeEEEEECCcC---cEEEEEcCCC----------------------C
Confidence            112566789999999999  455  9999999999999998653   2222222211                      1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc------
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK------  234 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~------  234 (279)
                      .|.++.++  +.++++|+.|+.|++||+++++++..+.+|...|.+++|  ++++|++|+.||.|++||+++++      
T Consensus       298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  373 (435)
T 1p22_A          298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA  373 (435)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred             cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence            36788884  679999999999999999999999999999999999999  68999999999999999997765      


Q ss_pred             ---eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 ---CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                         ++..+        .+|...|.+++|  ++.+|++|+.||.|++||
T Consensus       374 ~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          374 GTLCLRTL--------VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             TTTEEEEE--------CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cchheeec--------cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence               66666        688899999999  688899999999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.6e-33  Score=226.63  Aligned_cols=234  Identities=19%  Similarity=0.186  Sum_probs=182.2

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee-
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG-   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-   79 (279)
                      .||+|++||+++..  .+..+.+|...|.+++|++.  +++.+|++|+.||+|++||+.+................... 
T Consensus       181 ~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  256 (464)
T 3v7d_B          181 TDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  256 (464)
T ss_dssp             TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEES--SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred             CCCCEEEEECCCCc--EEEEECCCCCccEEEEEecC--CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence            48999999998764  47778889999999999842  16789999999999999999876433221111100000000 


Q ss_pred             ---ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           80 ---IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        80 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                         ......+.+|...|.++.  +++.  ++++++.||.|++||+++.   .....+.++                    
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~~--~~~~--~l~~~~~d~~i~vwd~~~~---~~~~~~~~~--------------------  309 (464)
T 3v7d_B          257 EENPYFVGVLRGHMASVRTVS--GHGN--IVVSGSYDNTLIVWDVAQM---KCLYILSGH--------------------  309 (464)
T ss_dssp             GGCTTEEEEECCCSSCEEEEE--EETT--EEEEEETTSCEEEEETTTT---EEEEEECCC--------------------
T ss_pred             CCCeEEEEEccCccceEEEEc--CCCC--EEEEEeCCCeEEEEECCCC---cEEEEecCC--------------------
Confidence               112446778999998874  5566  9999999999999998643   222222221                    


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                        ...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+  +++|++++.||.|++||+++++..
T Consensus       310 --~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          310 --TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK  385 (464)
T ss_dssp             --SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             --CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence              1237999999999999999999999999999999999999999999999997  689999999999999999998776


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ...         .+...+..++|+|++++|++|+ ||.|++||
T Consensus       386 ~~~---------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          386 FSY---------HHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEE---------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             eee---------cCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            665         3445678889999999999998 89999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=245.28  Aligned_cols=205  Identities=9%  Similarity=0.069  Sum_probs=168.1

Q ss_pred             eeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC
Q 023643           21 REILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG  100 (279)
Q Consensus        21 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  100 (279)
                      ..+|...|++++|+|    ++.+||+|+.||+|+||+..+                   .+....+ .|..+|.+++|+|
T Consensus        13 ~~gh~~~V~~lafsp----dg~~lAsgs~Dg~I~lw~~~~-------------------~~~~~~~-~~~~~V~~l~fsp   68 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDF----TQNLLAIATVTGEVHIYGQQQ-------------------VEVVIKL-EDRSAIKEMRFVK   68 (902)
T ss_dssp             EEECSSCEEEEEEET----TTTEEEEEETTSEEEEECSTT-------------------CEEEEEC-SSCCCEEEEEEET
T ss_pred             ccCCCCCcEEEEECC----CCCEEEEEeCCCEEEEEeCCC-------------------cEEEEEc-CCCCCEEEEEEcC
Confidence            447899999999999    999999999999999999876                   2322222 4788999999999


Q ss_pred             CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643          101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD  180 (279)
Q Consensus       101 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  180 (279)
                       ++  +|++++.|++|++||+++..   ....+. +                      ...|++++|+|+++++++|+.|
T Consensus        69 -g~--~L~S~s~D~~v~lWd~~~~~---~~~~~~-~----------------------~~~V~~v~~sp~g~~l~sgs~d  119 (902)
T 2oaj_A           69 -GI--YLVVINAKDTVYVLSLYSQK---VLTTVF-V----------------------PGKITSIDTDASLDWMLIGLQN  119 (902)
T ss_dssp             -TT--EEEEEETTCEEEEEETTTCS---EEEEEE-C----------------------SSCEEEEECCTTCSEEEEEETT
T ss_pred             -CC--EEEEEECcCeEEEEECCCCc---EEEEEc-C----------------------CCCEEEEEECCCCCEEEEEcCC
Confidence             76  99999999999999987532   111111 0                      0137999999999999999999


Q ss_pred             CeEEEEecCCCcEE-----------EEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcc----
Q 023643          181 SCAYCWDVESSRIK-----------MVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD----  244 (279)
Q Consensus       181 ~~i~i~d~~~~~~~-----------~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----  244 (279)
                      |.|++||+++++..           ..+++|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+..+..    
T Consensus       120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~  198 (902)
T 2oaj_A          120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP  198 (902)
T ss_dssp             SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred             CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC
Confidence            99999999988764           234678899999999996 5789999999999 999999999888854310    


Q ss_pred             ------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          245 ------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       245 ------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .....|...|.+++|+|+|.+|++|+.||.|++||
T Consensus       199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence                  01134567899999999999999999999999997

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.7e-33  Score=225.74  Aligned_cols=222  Identities=17%  Similarity=0.232  Sum_probs=174.2

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      .....|.+.|++++|+|.   ++.+||+++.||.|++|++.........    .     ....++..+.+|...|.+++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~----~-----~~~~~~~~~~~h~~~v~~l~~  189 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEP----S-----GECQPDLRLRGHQKEGYGLSW  189 (430)
T ss_dssp             EEEEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCT----T-----CCCCCSEEEECCSSCCCCEEE
T ss_pred             EEEEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCc----c-----ccCCCcEEecCCCCCeEEEEe
Confidence            345679999999999992   3789999999999999999763211100    0     003556677899999999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEe
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSA  177 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  177 (279)
                      +|++. .+|++++.||.|++|+++...........       ...+           ..+...|.+++|+| ++.+|+++
T Consensus       190 ~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~-----------~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          190 NPNLN-GYLLSASDDHTICLWDINATPKEHRVIDA-------KNIF-----------TGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CTTST-TEEEEECTTSCEEEEETTSCCBGGGEEEC-------SEEE-----------CCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCCC-CeEEEEeCCCeEEEEeCCCCCCCCceecc-------ceee-----------cCCCCCEeeeEEeCCCCCEEEEE
Confidence            99875 48999999999999998753221111000       0000           01222489999999 67788999


Q ss_pred             cCCCeEEEEecCCC---cEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCC-CceEEEecCCccccccCcce
Q 023643          178 AGDSCAYCWDVESS---RIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKS-GKCIKVIDPVKDKQLKGVIS  252 (279)
Q Consensus       178 ~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  252 (279)
                      +.|+.|++||++++   +.+..+..|...|++++|+|++. +|++|+.||.|++||+++ .+.+..+        ..|..
T Consensus       251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~--------~~h~~  322 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--------ESHKD  322 (430)
T ss_dssp             ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--------ECCSS
T ss_pred             eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe--------ecCCC
Confidence            99999999999987   57778888999999999999876 789999999999999998 5566776        67888


Q ss_pred             eeeEEEEcCCCC-EEEEEcCcceEEeCC
Q 023643          253 CVSCITLDASES-WLVRVRATNYVILFS  279 (279)
Q Consensus       253 ~v~~~~~~~~~~-~l~~~~~d~~i~~wd  279 (279)
                      .|.+++|+|+++ +|++++.|+.|++||
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            999999999985 699999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-33  Score=226.01  Aligned_cols=222  Identities=13%  Similarity=0.097  Sum_probs=176.9

Q ss_pred             CCCceeeeccccccc-----cceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCccc
Q 023643            1 MCGDSTNWDEDAYRK-----SILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKV   74 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   74 (279)
                      .||.|++||+.....     ..+..+.+|...|.+++|+|    ++ .+|++++.||.|++||+.+              
T Consensus       102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p----~~~~~l~s~~~dg~i~iwd~~~--------------  163 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP----TAQNVLLSAGCDNVILVWDVGT--------------  163 (402)
T ss_dssp             TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS----SBTTEEEEEETTSCEEEEETTT--------------
T ss_pred             CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc----CCCCEEEEEcCCCEEEEEECCC--------------
Confidence            489999999887632     34667889999999999999    76 7999999999999999998              


Q ss_pred             ceeeeccccccc--cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee-ccCcccceEEeecCCCCC
Q 023643           75 QQLLGIEPDGFL--HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL-QGNHVKPVLDLVNHQHKG  151 (279)
Q Consensus        75 ~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  151 (279)
                           ++.+..+  .+|...|.+++|+|++.  +|++++.||.|++||+++.   .....+ ..+...            
T Consensus       164 -----~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~------------  221 (402)
T 2aq5_A          164 -----GAAVLTLGPDVHPDTIYSVDWSRDGA--LICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGT------------  221 (402)
T ss_dssp             -----TEEEEEECTTTCCSCEEEEEECTTSS--CEEEEETTSEEEEEETTTT---EEEEEEECSSCSS------------
T ss_pred             -----CCccEEEecCCCCCceEEEEECCCCC--EEEEEecCCcEEEEeCCCC---ceeeeeccCCCCC------------
Confidence                 5566667  78999999999999998  9999999999999998753   222222 111110            


Q ss_pred             ccccCCCCCCceeEEEcCCCCeEEEe---cCCCeEEEEecCCCcE-EEEee-cCCcceEEEEEcCCCcEEE-EecCCCeE
Q 023643          152 PWGALSPVPENNAIAVDPQGGAIFSA---AGDSCAYCWDVESSRI-KMVFK-GHSDYLHCIVARNSTNQIV-TGSEDGTA  225 (279)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~l~-~~~~d~~i  225 (279)
                               .+.++.|+|++.+|++|   +.|+.|++||+++++. +.... .|...+.+++|+|++++|+ +|+.||.|
T Consensus       222 ---------~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          222 ---------RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             ---------SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred             ---------cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence                     26789999999999999   7899999999988654 33332 4677899999999999886 56689999


Q ss_pred             EEEeCCCCce-EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          226 RIWDCKSGKC-IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       226 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++||+.+++. +..+..      ..|...|.+++|+|++.++++  .++.+++|+
T Consensus       293 ~i~d~~~~~~~~~~l~~------~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          293 RYFEITSEAPFLHYLSM------FSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EEEEECSSTTCEEEEEE------ECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EEEEecCCCcceEeecc------cccCCcccceEEeccccccee--cceeEEEEE
Confidence            9999998874 444422      135688999999999998775  566888885

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.2e-33  Score=232.36  Aligned_cols=231  Identities=12%  Similarity=0.117  Sum_probs=188.5

Q ss_pred             CCceeeecccccc--ccceeeeeecccc-eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYR--KSILKEREILTRT-VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~--~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      +|.|++||+++..  ......+.+|... |.+++|+|.  .++++|++++.||.|++||+.++.....           .
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~-----------~  104 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI--KGSQYLCSGDESGKVIVWGWTFDKESNS-----------V  104 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSS--TTCCEEEEEETTSEEEEEEEEEEGGGTE-----------E
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcC--CCCCEEEEecCCCEEEEEeCCCCccccc-----------c
Confidence            6789999988651  1246678889999 999999981  1478999999999999999975210000           0


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                      .......+..|..+|.+++|+|+++  +|++++.+    +.|++||..     .....+.++                  
T Consensus       105 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d~~-----~~~~~~~~~------------------  159 (615)
T 1pgu_A          105 EVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSG-----NSLGEVSGH------------------  159 (615)
T ss_dssp             EEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTC-----CEEEECCSC------------------
T ss_pred             cccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEECC-----CcceeeecC------------------
Confidence            0355567778999999999999998  99999988    789999832     122222221                  


Q ss_pred             cCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCc---ceEEEEEcCC-CcEEEEecCCCeEEEEe
Q 023643          155 ALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSD---YLHCIVARNS-TNQIVTGSEDGTARIWD  229 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~~d~~i~vwd  229 (279)
                          ...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.||.|++||
T Consensus       160 ----~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          160 ----SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             ----SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             ----CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence                12479999999998 799999999999999999999999999999   9999999999 99999999999999999


Q ss_pred             CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++++.+..+....    ..|...|.+++|+ ++.+|++++.|+.|++||
T Consensus       236 ~~~~~~~~~~~~~~----~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd  280 (615)
T 1pgu_A          236 GKSGEFLKYIEDDQ----EPVQGGIFALSWL-DSQKFATVGADATIRVWD  280 (615)
T ss_dssp             TTTCCEEEECCBTT----BCCCSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred             CCCCCEeEEecccc----cccCCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence            99999988873100    1788899999999 999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=220.59  Aligned_cols=215  Identities=13%  Similarity=0.147  Sum_probs=164.5

Q ss_pred             cceeeeeecccceEEEEECCCCCCC---CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccC
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGS---PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGP   92 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~   92 (279)
                      ..+..+.+|.+.|++++|+|    +   +++|++|+.||.|++|++.+..                 ......+.+|.++
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~   88 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGP   88 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSC
T ss_pred             ceeEeccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCC
Confidence            44667889999999999999    6   6999999999999999998631                 2223567789999


Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE--cCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV--DPQ  170 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~  170 (279)
                      |.+++|+|+++  +|++++.||.|++||+++...   . ....                      +...|.+++|  +|+
T Consensus        89 v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~---~-~~~~----------------------~~~~v~~~~~~~~~~  140 (368)
T 3mmy_A           89 VLDVCWSDDGS--KVFTASCDKTAKMWDLSSNQA---I-QIAQ----------------------HDAPVKTIHWIKAPN  140 (368)
T ss_dssp             EEEEEECTTSS--EEEEEETTSEEEEEETTTTEE---E-EEEE----------------------CSSCEEEEEEEECSS
T ss_pred             EEEEEECcCCC--EEEEEcCCCcEEEEEcCCCCc---e-eecc----------------------ccCceEEEEEEeCCC
Confidence            99999999998  999999999999999875321   1 1111                      1124789999  899


Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----------------------------------------cceEEEEE
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----------------------------------------DYLHCIVA  209 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------------------------------~~i~~i~~  209 (279)
                      +.+|++++.|+.|++||+++++++..+..+.                                         ..+.++++
T Consensus       141 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (368)
T 3mmy_A          141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI  220 (368)
T ss_dssp             CEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEE
T ss_pred             CCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEE
Confidence            9999999999999999999887766665432                                         22344444


Q ss_pred             cCCCc----EEEEecCCCeEEEEeCCCC---ceEEEecCCcc----ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          210 RNSTN----QIVTGSEDGTARIWDCKSG---KCIKVIDPVKD----KQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       210 ~~~~~----~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .++..    .+++++.||.|++||++..   +.+..+..+..    .....|...|++++|+|++++|++|+.||.|++|
T Consensus       221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence            44333    2999999999999999887   45556632210    0011222379999999999999999999999999


Q ss_pred             C
Q 023643          279 S  279 (279)
Q Consensus       279 d  279 (279)
                      |
T Consensus       301 d  301 (368)
T 3mmy_A          301 D  301 (368)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=242.11  Aligned_cols=207  Identities=17%  Similarity=0.268  Sum_probs=170.7

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ..+.+|.+.|++++|+|    ++++|++|+.||+|++|++....                 ......+.+|.++|.+++|
T Consensus         3 ~~l~gH~~~V~~l~~s~----dg~~latg~~dg~I~vwd~~~~~-----------------~~~~~~l~~h~~~V~~l~~   61 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGET-----------------HKLIDTLTGHEGPVWRVDW   61 (753)
T ss_dssp             -----CCCCEEEECCCS----SSCCEEEEETTTEEEEEEEETTE-----------------EEEEEEECCCSSCEEEEEE
T ss_pred             eecccCcceeEEEEECC----CCCeEEEEECCCcEEEEecCCCC-----------------CccceeccCCcCceEEEEe
Confidence            45678999999999999    89999999999999999997421                 4566778899999999999


Q ss_pred             cCC--CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC--CCeE
Q 023643           99 YGG--NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ--GGAI  174 (279)
Q Consensus        99 ~~~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l  174 (279)
                      +|+  +.  +|++|+.||.|++||+++.. ........+                      +...|.+++|+|+  +..+
T Consensus        62 s~~~~~~--~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~----------------------h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           62 AHPKFGT--ILASCSYDGKVLIWKEENGR-WSQIAVHAV----------------------HSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             CCTTSCS--EEEEEETTSCEEEEEEETTE-EEEEEEECC----------------------CSSCEEEEEECCGGGCSEE
T ss_pred             cCCCCCC--EEEEEeCCCeEEEEECCCCc-ccccccccC----------------------CCCCeEEEEECCCCCCCEE
Confidence            988  66  99999999999999986431 011111211                      1124799999999  9999


Q ss_pred             EEecCCCeEEEEecCCC--cEEEEeecCCcceEEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCc----e
Q 023643          175 FSAAGDSCAYCWDVESS--RIKMVFKGHSDYLHCIVARN-------------STNQIVTGSEDGTARIWDCKSGK----C  235 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~d~~i~vwd~~~~~----~  235 (279)
                      ++|+.||.|++||++++  .....+.+|...|.+++|+|             ++.++++|+.||.|++||++++.    .
T Consensus       117 ~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence            99999999999999877  34456678999999999999             58999999999999999998873    4


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCC---CCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDAS---ESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~wd  279 (279)
                      ...+        .+|...|++++|+|+   +.+|++|+.||.|++||
T Consensus       197 ~~~~--------~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          197 ESTL--------EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             EEEE--------CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             eeee--------cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence            4444        688899999999999   89999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.4e-33  Score=241.23  Aligned_cols=207  Identities=14%  Similarity=0.260  Sum_probs=181.0

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      ...+.+.+|.+.|.+++|+|    ++.+||+++.||.|++||+.+                   ++.+..+.+|.++|.+
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp----~~~~la~~~~~g~v~iwd~~~-------------------~~~~~~~~~~~~~v~~   60 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVEIWNYET-------------------QVEVRSIQVTETPVRA   60 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTT-------------------TEEEEEEECCSSCEEE
T ss_pred             ccceeeecCCCceEEEEECC----CCCEEEEEeCCCEEEEEECCC-------------------CceEEEEecCCCcEEE
Confidence            44667889999999999999    999999999999999999988                   5667788899999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      ++|+|+++  +|++++.||.|++||+++.   .....+.++                      ...|++++|+|++++|+
T Consensus        61 ~~~s~~~~--~l~~~~~dg~i~vw~~~~~---~~~~~~~~~----------------------~~~v~~~~~s~~~~~l~  113 (814)
T 3mkq_A           61 GKFIARKN--WIIVGSDDFRIRVFNYNTG---EKVVDFEAH----------------------PDYIRSIAVHPTKPYVL  113 (814)
T ss_dssp             EEEEGGGT--EEEEEETTSEEEEEETTTC---CEEEEEECC----------------------SSCEEEEEECSSSSEEE
T ss_pred             EEEeCCCC--EEEEEeCCCeEEEEECCCC---cEEEEEecC----------------------CCCEEEEEEeCCCCEEE
Confidence            99999998  9999999999999998653   222222221                      12379999999999999


Q ss_pred             EecCCCeEEEEecCCC-cEEEEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee
Q 023643          176 SAAGDSCAYCWDVESS-RIKMVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC  253 (279)
Q Consensus       176 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  253 (279)
                      +++.|+.|++||++++ .....+.+|...|.+++|+| +++.|++++.||.|++||+.+++....+.       ..+...
T Consensus       114 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-------~~~~~~  186 (814)
T 3mkq_A          114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TGQERG  186 (814)
T ss_dssp             EEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-------CCCTTC
T ss_pred             EEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-------cCCCCC
Confidence            9999999999999987 77788889999999999999 88999999999999999999888877773       234478


Q ss_pred             eeEEEEcC--CCCEEEEEcCcceEEeCC
Q 023643          254 VSCITLDA--SESWLVRVRATNYVILFS  279 (279)
Q Consensus       254 v~~~~~~~--~~~~l~~~~~d~~i~~wd  279 (279)
                      +.+++|+|  ++.+|++++.||.|++||
T Consensus       187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d  214 (814)
T 3mkq_A          187 VNYVDYYPLPDKPYMITASDDLTIKIWD  214 (814)
T ss_dssp             CCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999999  999999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-32  Score=222.26  Aligned_cols=209  Identities=21%  Similarity=0.298  Sum_probs=180.0

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.  ..+..+.+|...|.+++|++      ++|++|+.||+|++||+.+                   +
T Consensus       137 ~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~-------------------~  189 (445)
T 2ovr_B          137 DDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAET-------------------G  189 (445)
T ss_dssp             TTSCEEEEETTTC--CEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTT-------------------T
T ss_pred             CCCcEEEEECCCC--cEEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCc-------------------C
Confidence            4899999998876  44778889999999999976      6999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|...|.++.|++  +  .+++++.||.|++||+++.   .....+.++                      ..
T Consensus       190 ~~~~~~~~h~~~v~~~~~~~--~--~l~s~s~dg~i~~wd~~~~---~~~~~~~~~----------------------~~  240 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETG---QCLHVLMGH----------------------VA  240 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSC---CEEEEEECC----------------------SS
T ss_pred             cEEEEECCCCCcEEEEEecC--C--EEEEEeCCCEEEEEECCCC---cEEEEEcCC----------------------cc
Confidence            66778889999999999964  3  8999999999999998653   222222221                      11


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.++++  ++.++++++.|+.|++||+++++++..+.+|...|.+++|  ++.++++++.|+.|++||+++++.+..+ 
T Consensus       241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-  315 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-  315 (445)
T ss_dssp             CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-
T ss_pred             cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-
Confidence            3788888  6789999999999999999999999999999999999999  7899999999999999999999999888 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             .+|...+.++.++  +.+|++|+.||.|++||
T Consensus       316 -------~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          316 -------TGHQSLTSGMELK--DNILVSGNADSTVKIWD  345 (445)
T ss_dssp             -------CCCCSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             -------cCCcccEEEEEEe--CCEEEEEeCCCeEEEEE
Confidence                   6777888888774  67999999999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.9e-33  Score=218.55  Aligned_cols=184  Identities=11%  Similarity=0.059  Sum_probs=144.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|+|||+++...  +..+. |..+|.+++|+|    ++++|++++.+ .+++|+..++.                 .
T Consensus       155 ~d~~i~iwd~~~~~~--~~~~~-~~~~V~~v~fsp----dg~~l~s~s~~-~~~~~~~~~~~-----------------~  209 (365)
T 4h5i_A          155 VPAIMRIIDPSDLTE--KFEIE-TRGEVKDLHFST----DGKVVAYITGS-SLEVISTVTGS-----------------C  209 (365)
T ss_dssp             SSCEEEEEETTTTEE--EEEEE-CSSCCCEEEECT----TSSEEEEECSS-CEEEEETTTCC-----------------E
T ss_pred             CCCEEEEeECCCCcE--EEEeC-CCCceEEEEEcc----CCceEEeccce-eEEEEEeccCc-----------------c
Confidence            378999999988643  44454 778899999999    99999999865 46666665531                 1


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCC----cEEEeecCCCccCcc-eeeeccCcccceEEeecCCCCCcccc
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG----RICGWRWKEFTESKV-PINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                      ........|...|.+++|+|++.  ++++++.|+    .+++|++........ ...+.+                    
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~--~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------------  267 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDT--VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN--------------------  267 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTE--EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES--------------------
T ss_pred             eeeeecCCCCCCEEEEEEcCCCC--EEEEEecCCcceeEEeecccccceecceeeeeecC--------------------
Confidence            11234456889999999999998  999999887    578888653211111 111111                    


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                        +...|++++|+|++++|++|+.|+.|++||+++++++..+ ++|..+|++++|+|+|++|++||.|++|+|||+...
T Consensus       268 --~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          268 --RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             --SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             --CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence              1124799999999999999999999999999999999875 789999999999999999999999999999999753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=220.51  Aligned_cols=216  Identities=12%  Similarity=0.081  Sum_probs=163.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.++.|++...+...+..+ .|...|.+++|+|    +|.+||+++.||+|++|+...                     
T Consensus        63 dg~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSP----dG~~LAs~s~dg~V~iwd~~~---------------------  116 (588)
T 2j04_A           63 LEFENKLDFELAQQNGLLNS-QPVCYPRVCKPSP----IDDWMAVLSNNGNVSVFKDNK---------------------  116 (588)
T ss_dssp             CCCCCTTTTSCCCSSCSSTT-SCSCCEEEEEECS----SSSCEEEEETTSCEEEEETTE---------------------
T ss_pred             CCCcceEEEEeCCCceEeec-CCCCcEEEEEECC----CCCEEEEEeCCCcEEEEeCCc---------------------
Confidence            34455555444332223233 3578899999999    999999999999999999543                     


Q ss_pred             ccccccCCcc-----CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCc----ceeeeccCcccceEEeecCCCCCc
Q 023643           82 PDGFLHGHDG-----PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESK----VPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        82 ~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                      .+..+. |..     .|.+++|+|+++  +|++|+.||+|++||++......    ....+..+.         .     
T Consensus       117 ~l~~l~-~~~~~~~~sv~svafSPDG~--~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~---------~-----  179 (588)
T 2j04_A          117 MLTNLD-SKGNLSSRTYHCFEWNPIES--SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD---------A-----  179 (588)
T ss_dssp             EEEECC-CSSCSTTTCEEEEEECSSSS--CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC---------T-----
T ss_pred             eeeecc-CCCccccccEEEEEEcCCCC--EEEEEcCCCEEEEEECCCCccccccceeeeeeeccc---------c-----
Confidence            223344 444     599999999998  99999999999999987532101    112221100         0     


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE---EEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI---KMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                          .+...|.+++|+|++  +++++.|+.|++||+..++.   .++++ +|...|.+++|+  ++.|++++ +++|++|
T Consensus       180 ----gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLW  250 (588)
T 2j04_A          180 ----GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKI  250 (588)
T ss_dssp             ----TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEE
T ss_pred             ----cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEE
Confidence                011248999999998  88888899999999988763   45664 788999999999  68999887 6999999


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEE--cCCCCEEEEEcCcceEEeC
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITL--DASESWLVRVRATNYVILF  278 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~w  278 (279)
                      |+..++.....        .+|...|..++|  +|++..|++++.||+ ++|
T Consensus       251 d~~~~~~~~~~--------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          251 DLKNYSISSLK--------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             ETTTTEEEEEE--------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             ECCCCeEEEEE--------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence            99887774433        478999999999  999999999999999 887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-31  Score=217.17  Aligned_cols=212  Identities=20%  Similarity=0.319  Sum_probs=180.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+++.  ..+..+.+|...|.+++|++      +.+++|+.||+|++||+.+                   +
T Consensus       177 ~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~~wd~~~-------------------~  229 (445)
T 2ovr_B          177 TDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIET-------------------G  229 (445)
T ss_dssp             TTSCEEEEETTTT--EEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESSS-------------------C
T ss_pred             CCCeEEEEECCcC--cEEEEECCCCCcEEEEEecC------CEEEEEeCCCEEEEEECCC-------------------C
Confidence            4899999999876  44777889999999999966      6799999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|..+|.+++|  ++.  ++++++.||.|++||+++.   .....+.++.                      .
T Consensus       230 ~~~~~~~~~~~~v~~~~~--~~~--~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~----------------------~  280 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY--DGR--RVVSGAYDFMVKVWDPETE---TCLHTLQGHT----------------------N  280 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE--CSS--CEEEEETTSCEEEEEGGGT---EEEEEECCCS----------------------S
T ss_pred             cEEEEEcCCcccEEEEEE--CCC--EEEEEcCCCEEEEEECCCC---cEeEEecCCC----------------------C
Confidence            667778899999999999  455  8999999999999998643   2222222211                      1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.++.|  ++.++++++.|+.|++||+++++.+..+.+|...+.++.++  ++++++++.||.|++||+++++.+..+.
T Consensus       281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            3688888  77899999999999999999999999999999999988875  6799999999999999999999999885


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+     ..|...|.+++|+  +++|++|+.||.|++||
T Consensus       357 ~~-----~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          357 GP-----NKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             ST-----TSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             cC-----CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            43     3588899999996  68999999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.8e-32  Score=243.70  Aligned_cols=211  Identities=15%  Similarity=0.211  Sum_probs=180.2

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ..+.+|.+.|++++|+|    ++++||+|+.||+|++||+.+                   ++.+..+.+|.+.|.+++|
T Consensus       609 ~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~i~vw~~~~-------------------~~~~~~~~~h~~~v~~~~~  665 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQ----DGQRIASCGADKTLQVFKAET-------------------GEKLLDIKAHEDEVLCCAF  665 (1249)
T ss_dssp             EEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------CCEEEEECCCSSCEEEEEE
T ss_pred             EEEecccccEEEEEECC----CCCEEEEEeCCCeEEEEECCC-------------------CCEEEEeccCCCCEEEEEE
Confidence            35678999999999999    999999999999999999998                   6667788899999999999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEE
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFS  176 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~  176 (279)
                      +|+++  +|++++.|+.|++||+.+.   .....+.++.                      ..|.+++|+|  ++..+++
T Consensus       666 s~~~~--~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~----------------------~~v~~~~~~~~~~~~~l~s  718 (1249)
T 3sfz_A          666 SSDDS--YIATCSADKKVKIWDSATG---KLVHTYDEHS----------------------EQVNCCHFTNKSNHLLLAT  718 (1249)
T ss_dssp             CTTSS--EEEEEETTSEEEEEETTTC---CEEEEEECCS----------------------SCEEEEEECSSSSCCEEEE
T ss_pred             ecCCC--EEEEEeCCCeEEEEECCCC---ceEEEEcCCC----------------------CcEEEEEEecCCCceEEEE
Confidence            99998  9999999999999998653   2222332211                      2378999999  4558999


Q ss_pred             ecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc------------
Q 023643          177 AAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD------------  244 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------  244 (279)
                      ++.|+.|++||+++++++..+.+|...|.+++|+|+++++++++.||.|++||+++++....+.....            
T Consensus       719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1249)
T 3sfz_A          719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE  798 (1249)
T ss_dssp             EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred             EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999998876665532110            


Q ss_pred             -----------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          245 -----------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       245 -----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                                                         ....+|...|.+++|+|+++++++++.||.|++||
T Consensus       799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN  868 (1249)
T ss_dssp             CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                                               01126778899999999999999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.1e-32  Score=215.07  Aligned_cols=228  Identities=12%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             eeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc
Q 023643            7 NWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL   86 (279)
Q Consensus         7 iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (279)
                      ||+++..  ..+.....|...|.+++|+|    ++++||+|+.++ +++|++.+.                   +.....
T Consensus         3 i~s~~~~--~~~~~~~~h~~~V~~v~fs~----dg~~la~g~~~~-~~iw~~~~~-------------------~~~~~~   56 (355)
T 3vu4_A            3 LGSMITR--NPIVPENHVSNPVTDYEFNQ----DQSCLILSTLKS-FEIYNVHPV-------------------AHIMSQ   56 (355)
T ss_dssp             ------------------CCCCCEEEECT----TSSEEEEECSSE-EEEEEETTE-------------------EEEEEE
T ss_pred             ccccccc--CCccccccCCCceEEEEECC----CCCEEEEEcCCE-EEEEecCCc-------------------ceeeee
Confidence            4555544  33556788999999999999    999999998775 789998862                   222222


Q ss_pred             cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC-----------------C
Q 023643           87 HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ-----------------H  149 (279)
Q Consensus        87 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~  149 (279)
                      .  ...+..+.+.++++ .++++++.|++|++||+++...   ...+..  ..++..+....                 .
T Consensus        57 ~--~~~~~~~~~~~~~~-~~~~~~~~d~~v~iWd~~~~~~---~~~~~~--~~~v~~v~~~~~~~~~~~~~~i~i~d~~~  128 (355)
T 3vu4_A           57 E--MRHLSKVRMLHRTN-YVAFVTGVKEVVHIWDDVKKQD---VSRIKV--DAPVKDLFLSREFIVVSYGDVISVFKFGN  128 (355)
T ss_dssp             E--CSCCCEEEECTTSS-EEEEECSSTTEEEEEETTTTEE---EEEEEC--SSCEEEEEECSSEEEEEETTEEEEEESST
T ss_pred             e--cCCeEEEEEcCCCC-EEEEEECCccEEEEEECCCCcE---EEEEEC--CCceEEEEEcCCEEEEEEcCEEEEEECCC
Confidence            1  12477788888876 2346788899999999875422   111111  11121111110                 0


Q ss_pred             C-CccccCCCCCCceeEEEcCCCCeEEE--ecCCCeEEEEecCCCc---------------E-EEEeecCCcceEEEEEc
Q 023643          150 K-GPWGALSPVPENNAIAVDPQGGAIFS--AAGDSCAYCWDVESSR---------------I-KMVFKGHSDYLHCIVAR  210 (279)
Q Consensus       150 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~i~~i~~~  210 (279)
                      . ........  ....+++++  .++++  |+.||.|++||+.+++               + +..+.+|...|.+++|+
T Consensus       129 ~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s  204 (355)
T 3vu4_A          129 PWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN  204 (355)
T ss_dssp             TCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred             CceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence            0 00000000  233455666  45555  6889999999999765               2 67889999999999999


Q ss_pred             CCCcEEEEecCCCe-EEEEeCCCCceEEEecCCccccccC-cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          211 NSTNQIVTGSEDGT-ARIWDCKSGKCIKVIDPVKDKQLKG-VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       211 ~~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |++++|++|+.|++ |++||+++++++..+.       .+ |...|.+++|+|++++|++++.|++|++||
T Consensus       205 ~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          205 RKSDMVATCSQDGTIIRVFKTEDGVLVREFR-------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             TTSSEEEEEETTCSEEEEEETTTCCEEEEEE-------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            99999999999998 9999999999999883       24 889999999999999999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-31  Score=209.51  Aligned_cols=218  Identities=14%  Similarity=0.096  Sum_probs=174.8

Q ss_pred             CCCceeeecc-ccccccceeeeee--cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDE-DAYRKSILKEREI--LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .||.|++||+ ++..   ...+..  |...|.+++|+|     +.+|++++.|+.|++||+.+.....          ..
T Consensus        77 ~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~----------~~  138 (342)
T 1yfq_A           77 VQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG-----DDKLIAASWDGLIEVIDPRNYGDGV----------IA  138 (342)
T ss_dssp             TTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-----TTEEEEEETTSEEEEECHHHHTTBC----------EE
T ss_pred             CCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-----CCEEEEEcCCCeEEEEccccccccc----------cc
Confidence            4899999999 7753   356677  999999999998     5789999999999999987510000          00


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCC-CccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKE-FTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      ...+++..+. |...|.+++|+|+    .+++++.|+.|++||++. ..... ...... +                   
T Consensus       139 ~~~~~~~~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~-~-------------------  192 (342)
T 1yfq_A          139 VKNLNSNNTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNG-TIEESG-L-------------------  192 (342)
T ss_dssp             EEESCSSSSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCC-EEEECS-C-------------------
T ss_pred             ccCCeeeEEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccc-eeeecC-C-------------------
Confidence            0023344454 8899999999986    499999999999999875 22111 111111 1                   


Q ss_pred             CCCCCceeEEEcC-CCCeEEEecCCCeEEEEecCCC------cEEEEeecCCc---------ceEEEEEcCCCcEEEEec
Q 023643          157 SPVPENNAIAVDP-QGGAIFSAAGDSCAYCWDVESS------RIKMVFKGHSD---------YLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       157 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------~i~~i~~~~~~~~l~~~~  220 (279)
                        ...+.+++|+| +++++++++.||.|++||++..      +....+..|..         .|.+++|+|++++|++++
T Consensus       193 --~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  270 (342)
T 1yfq_A          193 --KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             --SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred             --CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence              11378999999 9999999999999999999887      78888888865         999999999999999999


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCc-ceeeeEEEEcCCCCEEEEEcCcce
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGV-ISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      .||.|++||+++++.+..+        .+| ...|.+++  |++++|++|+.||.
T Consensus       271 ~dg~i~vwd~~~~~~~~~~--------~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          271 SDGIISCWNLQTRKKIKNF--------AKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEC--------CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             CCceEEEEcCccHhHhhhh--------hcccCCCceEec--CCCCeEEEEecCCc
Confidence            9999999999999999888        576 88999999  99999999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.6e-32  Score=211.96  Aligned_cols=204  Identities=15%  Similarity=0.191  Sum_probs=161.9

Q ss_pred             eeeeeecccceEEEEECCCCCCCCC-EEEEecC---CCcEEEEeCCCCCcccccccCCcccceeeecccccc-ccCCccC
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPD-TIVIASS---DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGF-LHGHDGP   92 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~   92 (279)
                      .....+|...|.+++|+|    ++. ++++|+.   ||.|++|++.+.                   +.... ..+|..+
T Consensus        11 ~~~~~~h~~~v~~~~~~p----~~~~l~~~~s~~~~d~~v~iw~~~~~-------------------~~~~~~~~~~~~~   67 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVP----CSAKFVTMGNFARGTGVIQLYEIQHG-------------------DLKLLREIEKAKP   67 (357)
T ss_dssp             EEEEEECSSCEEEEEECT----TSSEEEEEEC--CCCEEEEEEEECSS-------------------SEEEEEEEEESSC
T ss_pred             hhhccCCCCceEEEEEcC----CCceEEEecCccCCCcEEEEEeCCCC-------------------cccceeeecccCc
Confidence            345577999999999999    675 5556666   999999999873                   22222 2368899


Q ss_pred             eEEEEecCC---CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE----
Q 023643           93 AYDVKFYGG---NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI----  165 (279)
Q Consensus        93 v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----  165 (279)
                      |.+++|+|+   +.  +|++++.||.|++||++....  ....+.++ .                     ..|.++    
T Consensus        68 v~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~---------------------~~v~~~~~~~  121 (357)
T 3i2n_A           68 IKCGTFGATSLQQR--YLATGDFGGNLHIWNLEAPEM--PVYSVKGH-K---------------------EIINAIDGIG  121 (357)
T ss_dssp             EEEEECTTCCTTTC--CEEEEETTSCEEEECTTSCSS--CSEEECCC-S---------------------SCEEEEEEES
T ss_pred             EEEEEEcCCCCCCc--eEEEecCCCeEEEEeCCCCCc--cEEEEEec-c---------------------cceEEEeecc
Confidence            999999998   46  999999999999999875421  22222221 1                     136777    


Q ss_pred             --EEcCCCCeEEEecCCCeEEEEecCCCc-EEEEeecCCc----ceEEEE----EcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          166 --AVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSD----YLHCIV----ARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       166 --~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~----~i~~i~----~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                        +|+|++++|++++.|+.|++||+++++ ++..+..|.+    .+.+++    |+|++++|++++.||.|++||+++++
T Consensus       122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (357)
T 3i2n_A          122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA  201 (357)
T ss_dssp             GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred             ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence              457899999999999999999999886 6777766554    789998    78899999999999999999999988


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcC---CCCEEEEEcCcceEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDA---SESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~wd  279 (279)
                      .....         .|...|.+++|+|   ++.+|++++.||.|++||
T Consensus       202 ~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d  240 (357)
T 3i2n_A          202 LRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD  240 (357)
T ss_dssp             EEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred             eeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence            75543         6677899999999   999999999999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-30  Score=211.95  Aligned_cols=220  Identities=15%  Similarity=0.129  Sum_probs=171.0

Q ss_pred             CCceeeeccc--cccccceeeee--ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDED--AYRKSILKERE--ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      ||.|++||+.  +..  .+..+.  .|...|.+++|+|    ++.+|++|+.+|.|++|++.+....             
T Consensus       124 dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~~g~v~~~~~~~~~~~-------------  184 (450)
T 2vdu_B          124 DKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAE----DDTTVIIADKFGDVYSIDINSIPEE-------------  184 (450)
T ss_dssp             GTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECT----TSSEEEEEETTSEEEEEETTSCCCS-------------
T ss_pred             CCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcC----CCCEEEEEeCCCcEEEEecCCcccc-------------
Confidence            7999999988  543  344444  5678999999999    8999999999999999999873211             


Q ss_pred             eeccccccccCCccCeEEEEecCC---CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGG---NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                        ..+...+.+|...|.+++|+|+   +.  +|++++.|+.|++||++..   .....+...+                 
T Consensus       185 --~~~~~~~~~h~~~v~~~~~sp~~~~~~--~l~s~~~d~~i~vwd~~~~---~~~~~~~~~h-----------------  240 (450)
T 2vdu_B          185 --KFTQEPILGHVSMLTDVHLIKDSDGHQ--FIITSDRDEHIKISHYPQC---FIVDKWLFGH-----------------  240 (450)
T ss_dssp             --SCCCCCSEECSSCEEEEEEEECTTSCE--EEEEEETTSCEEEEEESCT---TCEEEECCCC-----------------
T ss_pred             --cccceeeecccCceEEEEEcCCCCCCc--EEEEEcCCCcEEEEECCCC---ceeeeeecCC-----------------
Confidence              0033467789999999999999   76  9999999999999998643   2222211111                 


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-------------------------CcceEEEEE
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-------------------------SDYLHCIVA  209 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------~~~i~~i~~  209 (279)
                          ...|.+++|+ ++.+|++++.|+.|++||+++++++..+..+                         ...|.+++|
T Consensus       241 ----~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          241 ----KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             ----SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             ----CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence                1247999999 9999999999999999999999988887632                         356899999


Q ss_pred             cCCCcEEEEec-CCCeEEEEeC--CCC---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC------cceEEe
Q 023643          210 RNSTNQIVTGS-EDGTARIWDC--KSG---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA------TNYVIL  277 (279)
Q Consensus       210 ~~~~~~l~~~~-~d~~i~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~  277 (279)
                      +|++++|++++ .|+.|++|++  ..+   +.+..+        ..| ..|.+++|+|++.++++++.      +..|.+
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~--------~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII--------TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE--------ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe--------ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence            99999999998 8999999999  555   555566        455 78999999996544444443      444666


Q ss_pred             C
Q 023643          278 F  278 (279)
Q Consensus       278 w  278 (279)
                      |
T Consensus       387 ~  387 (450)
T 2vdu_B          387 I  387 (450)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-31  Score=228.87  Aligned_cols=234  Identities=12%  Similarity=0.116  Sum_probs=171.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|+||+..+...  ...+ .|...|.+++|+|     +++|++++.|++|++||+.+                   +
T Consensus        37 ~Dg~I~lw~~~~~~~--~~~~-~~~~~V~~l~fsp-----g~~L~S~s~D~~v~lWd~~~-------------------~   89 (902)
T 2oaj_A           37 VTGEVHIYGQQQVEV--VIKL-EDRSAIKEMRFVK-----GIYLVVINAKDTVYVLSLYS-------------------Q   89 (902)
T ss_dssp             TTSEEEEECSTTCEE--EEEC-SSCCCEEEEEEET-----TTEEEEEETTCEEEEEETTT-------------------C
T ss_pred             CCCEEEEEeCCCcEE--EEEc-CCCCCEEEEEEcC-----CCEEEEEECcCeEEEEECCC-------------------C
Confidence            489999999876532  3233 3788999999999     45999999999999999998                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+. |.+.|++++|+|+++  +|++|+.||.|++||++.....  .....  ...   .   .    ......+..
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~--~~~i~--~~~---~---~----~~~~~~h~~  152 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLS--SFKLD--NLQ---K---S----SFFPAARLS  152 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEE--EEEEC--CHH---H---H----HTCSSSCCC
T ss_pred             cEEEEEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccc--cceec--ccc---c---c----ccccccCCC
Confidence            4445554 667899999999998  9999999999999998753211  00000  000   0   0    000112334


Q ss_pred             CceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecC------------------CcceEEEEEcCCCcEEEEecC
Q 023643          161 ENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGH------------------SDYLHCIVARNSTNQIVTGSE  221 (279)
Q Consensus       161 ~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~~~~~  221 (279)
                      .|++++|+|+ +..+++|+.|+.| +||+++++++..+..|                  ...|.+++|+|+|++|++++.
T Consensus       153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence            5899999996 4689999999999 9999999999888765                  477999999999999999999


Q ss_pred             CCeEEEEeCCCCceEEE--ec---CCccc-c-cc---CcceeeeEEEEc----CCC-CEEEEEcCcc-----eEEeCC
Q 023643          222 DGTARIWDCKSGKCIKV--ID---PVKDK-Q-LK---GVISCVSCITLD----ASE-SWLVRVRATN-----YVILFS  279 (279)
Q Consensus       222 d~~i~vwd~~~~~~~~~--~~---~~~~~-~-~~---~~~~~v~~~~~~----~~~-~~l~~~~~d~-----~i~~wd  279 (279)
                      ||+|++||+++++++..  +.   .+... . ..   .|...|.+++|+    |++ .+|++|+.|.     .+.+|+
T Consensus       232 Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          232 DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence            99999999999988764  21   01000 0 00   245689999995    443 5677776652     566653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-31  Score=212.69  Aligned_cols=214  Identities=11%  Similarity=0.090  Sum_probs=158.9

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc-------ccccCCcccceeee---cccccccc-CCcc
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL-------PLGLSNSKVQQLLG---IEPDGFLH-GHDG   91 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~-~h~~   91 (279)
                      .-...|.+++|+|    ||+++|+++.|++|+  |........       ...+.+.+....+.   .+....+. .|..
T Consensus        13 ~~~~~v~sv~~Sp----DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~   86 (588)
T 2j04_A           13 EFEDWKNNLTWAR----DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVC   86 (588)
T ss_dssp             CCSSSSCCEEECT----TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSC
T ss_pred             HhhccEEEEEECC----CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCC
Confidence            3457899999999    999999999999999  655443221       12223332222111   22222222 4688


Q ss_pred             CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643           92 PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG  171 (279)
Q Consensus        92 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  171 (279)
                      .|.+++|+|+++  +|++++.||.|++||.+.     ....+. ++. +                -....+.+++|+|+|
T Consensus        87 ~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~-~----------------~~~~sv~svafSPDG  141 (588)
T 2j04_A           87 YPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-----MLTNLD-SKG-N----------------LSSRTYHCFEWNPIE  141 (588)
T ss_dssp             CEEEEEECSSSS--CEEEEETTSCEEEEETTE-----EEEECC-CSS-C----------------STTTCEEEEEECSSS
T ss_pred             cEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-----eeeecc-CCC-c----------------cccccEEEEEEcCCC
Confidence            899999999998  999999999999999432     111111 110 0                001137899999999


Q ss_pred             CeEEEecCCCeEEEEecCCCc-------EEEEe----ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE---E
Q 023643          172 GAIFSAAGDSCAYCWDVESSR-------IKMVF----KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI---K  237 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~-------~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~  237 (279)
                      ++|++|+.||+|++||+.+++       .+.++    .+|.+.|.+++|+|+|  +++++.|++|++||+..++..   .
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~  219 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR  219 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence            999999999999999999875       35676    5677899999999999  888889999999999887732   3


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.       .+|...|.+++|+  +.+||+++ ++.|++||
T Consensus       220 tL~-------~~h~~~V~svaFs--g~~LASa~-~~tIkLWd  251 (588)
T 2j04_A          220 MIQ-------NASRRKITDLKIV--DYKVVLTC-PGYVHKID  251 (588)
T ss_dssp             EEE-------CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEE
T ss_pred             eec-------ccccCcEEEEEEE--CCEEEEEe-CCeEEEEE
Confidence            442       3677899999999  68899987 69999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=9.8e-30  Score=199.91  Aligned_cols=232  Identities=10%  Similarity=0.025  Sum_probs=159.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |+.|++||.+..+  .+..+. +...|.+++|++    +  .++++ .|+.|++||+.+.                  .+
T Consensus        80 d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~----~--~~~~~-~~~~i~i~d~~~~------------------~~  131 (355)
T 3vu4_A           80 KEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSR----E--FIVVS-YGDVISVFKFGNP------------------WK  131 (355)
T ss_dssp             TTEEEEEETTTTE--EEEEEE-CSSCEEEEEECS----S--EEEEE-ETTEEEEEESSTT------------------CC
T ss_pred             ccEEEEEECCCCc--EEEEEE-CCCceEEEEEcC----C--EEEEE-EcCEEEEEECCCC------------------ce
Confidence            6799999988764  355555 667999999998    3  34443 4789999999873                  13


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEE--eeCCCcEEEeecCCCccCcce-eeeccCcccc-eEEeecCCCCCccccCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLS--CGDDGRICGWRWKEFTESKVP-INLQGNHVKP-VLDLVNHQHKGPWGALS  157 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~  157 (279)
                      .+..+..   +...+++++  .  +++.  ++.||.|++||++........ .........+ +..+           ..
T Consensus       132 ~~~~~~~---~~~~~~~s~--~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~~  193 (355)
T 3vu4_A          132 RITDDIR---FGGVCEFSN--G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-----------KA  193 (355)
T ss_dssp             BSSCCEE---EEEEEEEET--T--EEEEEESSCTTCEEEEECCC------------------CCEEE-----------CC
T ss_pred             eeEEecc---CCceEEEEc--c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----------Ec
Confidence            4444443   444566666  3  5555  689999999998753211000 0000000001 1111           12


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCe-EEEEecCCCcEEEEee-c-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSC-AYCWDVESSRIKMVFK-G-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      |...|++++|+|++.+|++|+.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|++|++||++.+.
T Consensus       194 h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            2335899999999999999999998 9999999999999998 5 99999999999999999999999999999997653


Q ss_pred             eE--EEecC-----Ccc-------ccc-cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CI--KVIDP-----VKD-------KQL-KGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~--~~~~~-----~~~-------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..  ..+..     ...       ..+ .........++|++++++|++++.||.+++|+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          274 DNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             CCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            21  11110     000       000 11222346789999999999999999999884

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.6e-31  Score=209.31  Aligned_cols=190  Identities=10%  Similarity=-0.002  Sum_probs=148.1

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ++.+|++|+.||+|++||+.++                   +.+..+.  ...|.++.|+|.     +++++.|++|++|
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~-------------------~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w  100 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDS-------------------KTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLL  100 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSS-------------------SCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCC-------------------cEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEE
Confidence            7889999999999999999883                   3344443  456777778775     8999999999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~  197 (279)
                      +.+..   ........  ...+.....          .+...|.+++|+|  +++++++++.|+.|++||+++++.+..+
T Consensus       101 ~~~~~---~~~~~~~~--~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  165 (343)
T 3lrv_A          101 YPGNQ---ITILDSKT--NKVLREIEV----------DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH  165 (343)
T ss_dssp             ETTTE---EEEEETTT--CCEEEEEEC----------CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred             EccCc---eEEeecCC--cceeEEeec----------CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            97531   00001100  010111110          1112489999999  9999999999999999999999987766


Q ss_pred             ec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE-EEecCCccccccC-cceeeeEEEEcCCCCEEEEEcCcce
Q 023643          198 KG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI-KVIDPVKDKQLKG-VISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       198 ~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      .. +...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+        .. |...|++++|+|++.+|++++ |+.
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~--------~~~h~~~v~~l~fs~~g~~l~s~~-~~~  236 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF--------PVDEEAKIKEVKFADNGYWMVVEC-DQT  236 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC--------CCCTTSCEEEEEECTTSSEEEEEE-SSB
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE--------eccCCCCEEEEEEeCCCCEEEEEe-CCe
Confidence            43 5568999999999999999999999999999999887 666        45 889999999999999999999 459


Q ss_pred             EEeCC
Q 023643          275 VILFS  279 (279)
Q Consensus       275 i~~wd  279 (279)
                      |++||
T Consensus       237 v~iwd  241 (343)
T 3lrv_A          237 VVCFD  241 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.6e-29  Score=201.31  Aligned_cols=214  Identities=10%  Similarity=0.083  Sum_probs=170.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .||.|++||+++.+  .+..+..| ..+.+++|+|    +++++ ++++.|++|++||+.+                   
T Consensus        10 ~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~-------------------   63 (391)
T 1l0q_A           10 ESDNISVIDVTSNK--VTATIPVG-SNPMGAVISP----DGTKVYVANAHSNDVSIIDTAT-------------------   63 (391)
T ss_dssp             TTTEEEEEETTTTE--EEEEEECS-SSEEEEEECT----TSSEEEEEEGGGTEEEEEETTT-------------------
T ss_pred             CCCEEEEEECCCCe--EEEEeecC-CCcceEEECC----CCCEEEEECCCCCeEEEEECCC-------------------
Confidence            37899999998764  35556655 4589999999    88876 6777999999999987                   


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      ++.+..+..+. .+.+++|+|+++  +| ++++.++.|++||+++.+   ....+..+                      
T Consensus        64 ~~~~~~~~~~~-~v~~~~~spdg~--~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~----------------------  115 (391)
T 1l0q_A           64 NNVIATVPAGS-SPQGVAVSPDGK--QVYVTNMASSTLSVIDTTSNT---VAGTVKTG----------------------  115 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSS--EEEEEETTTTEEEEEETTTTE---EEEEEECS----------------------
T ss_pred             CeEEEEEECCC-CccceEECCCCC--EEEEEECCCCEEEEEECCCCe---EEEEEeCC----------------------
Confidence            45555555444 899999999998  66 556678999999986532   11111111                      


Q ss_pred             CCCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCceE
Q 023643          159 VPENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~  236 (279)
                       ..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++..
T Consensus       116 -~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          116 -KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence             126899999999977 67888999999999999999888765 456999999999877 67888999999999999888


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEc---CcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR---ATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~wd  279 (279)
                      ..+.         +...+.+++|+|++++|++++   .++.|++||
T Consensus       194 ~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          194 DTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             EEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             EEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence            7772         345788999999999999887   689999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=5.9e-31  Score=209.63  Aligned_cols=198  Identities=10%  Similarity=0.056  Sum_probs=134.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecC--------CCCceEEEEee
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYG--------GNEDALLLSCG  111 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~~~l~s~~  111 (279)
                      ++.+||+++.|++|+|||..+....              ....+..+.+|.+.|++++|+|        +++  +|+|++
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~--------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s  163 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETII--------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVG  163 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEE--------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccc--------------eeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEE
Confidence            5668999999999999999874211              1234567889999999999998        555  999999


Q ss_pred             CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC-eEEEecCCCeEEEEecCC
Q 023643          112 DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG-AIFSAAGDSCAYCWDVES  190 (279)
Q Consensus       112 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~  190 (279)
                      .|++|+|||+++..   .......++                      ..+.+++|+|++. +|++++.|+.|++||+++
T Consensus       164 ~D~tv~~Wd~~~~~---~~~~~~~~~----------------------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          164 DDCTLIIWRLTDEG---PILAGYPLS----------------------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             TTSEEEEEEEETTE---EEEEEEECS----------------------SCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             CCCeEEEEECCCCc---eeeeecCCC----------------------CCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            99999999986432   222222211                      1378999999875 799999999999999988


Q ss_pred             CcEEEEe-------------------------ecCCcceEEEEEc-CCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643          191 SRIKMVF-------------------------KGHSDYLHCIVAR-NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD  244 (279)
Q Consensus       191 ~~~~~~~-------------------------~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  244 (279)
                      ++.....                         .+|...+.++.|+ |+++.|++++.|+++++||+..++....+..+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~  298 (393)
T 4gq1_A          219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM  298 (393)
T ss_dssp             CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred             CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence            7544322                         3567788899987 6899999999999999999998876666532210


Q ss_pred             -----------ccccCcceeeeEEEEcC--CCCEEEEEcCcceEEeCC
Q 023643          245 -----------KQLKGVISCVSCITLDA--SESWLVRVRATNYVILFS  279 (279)
Q Consensus       245 -----------~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd  279 (279)
                                 .....+. ......|+|  ++.++++|+.||.|++||
T Consensus       299 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          299 KLGPKNLLPNVQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             -----CCSCSEEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred             ccccEEEccccccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence                       0001111 122233443  345678889999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=201.41  Aligned_cols=236  Identities=17%  Similarity=0.146  Sum_probs=148.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCccc-ccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKL-PLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~   78 (279)
                      .||.|++||++..  ..+..+..|...|.+++|+|    ++. +|++++.||.|++||+.+..... .+.......    
T Consensus       164 ~~~~v~~~d~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----  233 (408)
T 4a11_B          164 RGPKVQLCDLKSG--SCSHILQGHRQEILAVSWSP----RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK----  233 (408)
T ss_dssp             SSSSEEEEESSSS--CCCEEECCCCSCEEEEEECS----SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----
T ss_pred             CCCeEEEEeCCCc--ceeeeecCCCCcEEEEEECC----CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----
Confidence            3789999998876  34677888999999999999    777 69999999999999998753211 111100000    


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      ..........|...|.+++|+|+++  +|++++.||.|++||+++................                   
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------------  292 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGL--HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK-------------------  292 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS-------------------
T ss_pred             ceeeccccccccCceeEEEEcCCCC--EEEEecCCCeEEEEECCCCccceecccccccccc-------------------
Confidence            0223344567999999999999998  9999999999999998764322111110000000                   


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                       ..+...........+++++.++.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..
T Consensus       293 -~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          293 -KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             -SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             -ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence             0011222223445677778899999999999999999999999999999999999999999999999999999887766


Q ss_pred             ecCCccccccCcceeeeEEEEcC-CCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDA-SESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd  279 (279)
                      ....        .   ....+.| ....+.+.+.++.+++|+
T Consensus       372 ~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          372 DDET--------T---TKSQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             ------------------------------------------
T ss_pred             CCce--------E---eccccccccceeecccCccCceeecC
Confidence            5321        1   1122333 334456677889999995

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.5e-29  Score=197.61  Aligned_cols=183  Identities=21%  Similarity=0.247  Sum_probs=147.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.+++||...... .......|...+..++|++.  ....++++++.|+.|++||+.+                   .
T Consensus       148 ~d~~~~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~~~~~s~~~d~~i~i~d~~~-------------------~  205 (340)
T 4aow_A          148 RDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPN--SSNPIIVSCGWDKLVKVWNLAN-------------------C  205 (340)
T ss_dssp             TTSCEEEECTTSCEE-EEECSSSCSSCEEEEEECSC--SSSCEEEEEETTSCEEEEETTT-------------------T
T ss_pred             CCCeEEEEEeCCCce-EEEEeccccCcccceEEccC--CCCcEEEEEcCCCEEEEEECCC-------------------C
Confidence            389999999876542 34456678999999999983  1345788999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +.+..+.+|.++|.+++|+|+++  +|++++.||.|++||++..   .....+..+                       .
T Consensus       206 ~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~Dg~i~iwd~~~~---~~~~~~~~~-----------------------~  257 (340)
T 4aow_A          206 KLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEG---KHLYTLDGG-----------------------D  257 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS--EEEEEETTCEEEEEETTTT---EEEEEEECS-----------------------S
T ss_pred             ceeeEecCCCCcEEEEEECCCCC--EEEEEeCCCeEEEEEeccC---ceeeeecCC-----------------------c
Confidence            66778889999999999999998  9999999999999998653   222222211                       1


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee---------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK---------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      .+.++.|+|++. +++++.|+.|++||++++..+..++         +|...|++++|+|++++|++|+.||.|+|||++
T Consensus       258 ~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          258 IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            378999999765 5566679999999999887766553         578899999999999999999999999999999


Q ss_pred             CCc
Q 023643          232 SGK  234 (279)
Q Consensus       232 ~~~  234 (279)
                      +|+
T Consensus       337 tGt  339 (340)
T 4aow_A          337 IGT  339 (340)
T ss_dssp             C--
T ss_pred             CcC
Confidence            885

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.8e-28  Score=195.28  Aligned_cols=213  Identities=11%  Similarity=0.045  Sum_probs=168.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||.|++||+++.+  .+..+..+ ..+.+++|+|    ++++|+ +++.++.|++||+.+                   +
T Consensus        53 d~~i~v~d~~~~~--~~~~~~~~-~~v~~~~~sp----dg~~l~~~~~~~~~v~v~d~~~-------------------~  106 (391)
T 1l0q_A           53 SNDVSIIDTATNN--VIATVPAG-SSPQGVAVSP----DGKQVYVTNMASSTLSVIDTTS-------------------N  106 (391)
T ss_dssp             GTEEEEEETTTTE--EEEEEECS-SSEEEEEECT----TSSEEEEEETTTTEEEEEETTT-------------------T
T ss_pred             CCeEEEEECCCCe--EEEEEECC-CCccceEECC----CCCEEEEEECCCCEEEEEECCC-------------------C
Confidence            7899999987764  35555544 4899999999    888775 556779999999997                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      +.+..+..| ..+.+++|+|+++  .| ++++.|+.|++||+++.+   ....+..+.                      
T Consensus       107 ~~~~~~~~~-~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~----------------------  158 (391)
T 1l0q_A          107 TVAGTVKTG-KSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKA---VINTVSVGR----------------------  158 (391)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTE---EEEEEECCS----------------------
T ss_pred             eEEEEEeCC-CCcceEEECCCCC--EEEEEeCCCCEEEEEECCCCc---EEEEEecCC----------------------
Confidence            444455544 4689999999998  66 788889999999986432   222221111                      


Q ss_pred             CCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCCce
Q 023643          160 PENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSGKC  235 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~  235 (279)
                       .+.+++|+|+++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++   .++.|++||+++++.
T Consensus       159 -~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          159 -SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             -CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence             25789999999877 567889999999999998888776 566889999999999988887   699999999999998


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEE-EEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWL-VRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd  279 (279)
                      +..+.        .+. .+.+++|+|++++| ++++.|+.|++||
T Consensus       237 ~~~~~--------~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          237 TARIP--------VGP-DPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EEEEE--------CCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEe--------cCC-CccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            88873        332 46889999999877 6778899999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=4.6e-29  Score=201.29  Aligned_cols=217  Identities=12%  Similarity=0.038  Sum_probs=174.0

Q ss_pred             CCceeeecccccccccee---eeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILK---EREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      ||.|++||+++.+.....   .+..|...|.+++|+|    ++.++++++.|+.|++||+.+                  
T Consensus       143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~~d~~v~~~d~~~------------------  200 (433)
T 3bws_A          143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE----HNELWVSQMQANAVHVFDLKT------------------  200 (433)
T ss_dssp             SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG----GTEEEEEEGGGTEEEEEETTT------------------
T ss_pred             CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC----CCEEEEEECCCCEEEEEECCC------------------
Confidence            678999998876432111   4457888999999999    899999999999999999987                  


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                       ++.+..+..|...+.+++|+|+++  ++ ++++.|+.|++||+++..   ....+...                     
T Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~---------------------  253 (433)
T 3bws_A          201 -LAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKL---EIRKTDKI---------------------  253 (433)
T ss_dssp             -CCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTE---EEEECCCC---------------------
T ss_pred             -ceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCc---EEEEecCC---------------------
Confidence             555667778889999999999998  66 566689999999986432   11111111                     


Q ss_pred             CCCCceeEEEcCCCCeEEEec--------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEE
Q 023643          158 PVPENNAIAVDPQGGAIFSAA--------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIW  228 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vw  228 (279)
                        ..+.+++|+|+++.+++++        .|+.|++||+++++.+..+. |...+.+++|+|+++. +++++.|+.|++|
T Consensus       254 --~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          254 --GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             --SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             --CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence              1258999999999998887        58899999999998877664 5668899999999865 5677999999999


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC---------------cceEEeCC
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA---------------TNYVILFS  279 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------d~~i~~wd  279 (279)
                      |+.+++.+..+.         +...+.+++|+|++++|++++.               ||.|++||
T Consensus       331 d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          331 DLKEKKVQKSIP---------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             ETTTTEEEEEEE---------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             ECCCCcEEEEec---------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence            999998887772         4456889999999998888876               57999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=5.2e-29  Score=200.25  Aligned_cols=191  Identities=14%  Similarity=0.187  Sum_probs=149.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |+.+++||..... ..+..+.+|...+..+.|+|    ++.++++++.|+.|++|+..+....               ..
T Consensus       208 d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~----~g~~l~s~~~D~~v~i~~~~~~~~~---------------~~  267 (420)
T 4gga_A          208 SGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG---------------WV  267 (420)
T ss_dssp             TSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCCSSC---------------SC
T ss_pred             CCceeEeeecccc-eeeEEecccccceeeeeecC----CCCeeeeeeccccceEEeecccccc---------------ce
Confidence            4556666544432 33456778999999999999    8999999999999999999874321               23


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEE--eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLS--CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      .+.....|...|.+++|+|.+. .++++  |+.|++|++||+++..   ....+..+.                      
T Consensus       268 ~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~---~~~~~~~~~----------------------  321 (420)
T 4gga_A          268 PLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGA---CLSAVDAHS----------------------  321 (420)
T ss_dssp             CSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTE---EEEEEECSS----------------------
T ss_pred             eeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccc---cceeecccc----------------------
Confidence            3455677999999999999876 35654  4579999999987542   222222111                      


Q ss_pred             CCceeEEEcCCCCeEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          160 PENNAIAVDPQGGAIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                       .+.++.|+|+++.+++++  .|+.|++||+.+++++..+.+|.+.|++++|+|+|++|++|+.|++|+|||+....+..
T Consensus       322 -~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          322 -QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             -CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             -ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence             268899999999887754  68999999999999999999999999999999999999999999999999998766655


Q ss_pred             Ee
Q 023643          238 VI  239 (279)
Q Consensus       238 ~~  239 (279)
                      ..
T Consensus       401 ~~  402 (420)
T 4gga_A          401 RR  402 (420)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.8e-28  Score=195.92  Aligned_cols=214  Identities=9%  Similarity=0.049  Sum_probs=170.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||.|++||+++..  .+..+..|...+.+++|+|    ++.++ ++++.|+.|++||+.+                   +
T Consensus       190 d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~i~~~d~~~-------------------~  244 (433)
T 3bws_A          190 ANAVHVFDLKTLA--YKATVDLTGKWSKILLYDP----IRDLVYCSNWISEDISVIDRKT-------------------K  244 (433)
T ss_dssp             GTEEEEEETTTCC--EEEEEECSSSSEEEEEEET----TTTEEEEEETTTTEEEEEETTT-------------------T
T ss_pred             CCEEEEEECCCce--EEEEEcCCCCCeeEEEEcC----CCCEEEEEecCCCcEEEEECCC-------------------C
Confidence            7899999988763  3566777889999999999    78877 5566899999999987                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEee--------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG--------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                      +.+..+..+ ..+.+++|+|+++  ++++++        .|+.|++||+++...   .... .. ..             
T Consensus       245 ~~~~~~~~~-~~~~~~~~~~~g~--~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~~-~~-~~-------------  303 (433)
T 3bws_A          245 LEIRKTDKI-GLPRGLLLSKDGK--ELYIAQFSASNQESGGGRLGIYSMDKEKL---IDTI-GP-PG-------------  303 (433)
T ss_dssp             EEEEECCCC-SEEEEEEECTTSS--EEEEEEEESCTTCSCCEEEEEEETTTTEE---EEEE-EE-EE-------------
T ss_pred             cEEEEecCC-CCceEEEEcCCCC--EEEEEECCCCccccCCCeEEEEECCCCcE---Eeec-cC-CC-------------
Confidence            444455544 4489999999998  888887        588999999865321   1111 00 00             


Q ss_pred             cccCCCCCCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC----------
Q 023643          153 WGALSPVPENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE----------  221 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----------  221 (279)
                              .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+++++++++.          
T Consensus       304 --------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  374 (433)
T 3bws_A          304 --------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL  374 (433)
T ss_dssp             --------CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred             --------CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence                    25789999999755 666889999999999998888876 6778999999999998888776          


Q ss_pred             -----CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643          222 -----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILFS  279 (279)
Q Consensus       222 -----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd  279 (279)
                           ||.|++||+.+++.+..+.        . ...+.+++|+|++++|++++. |+.|++|+
T Consensus       375 ~~g~~dg~v~~~d~~~~~~~~~~~--------~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          375 KKGLVLGKVYVIDTTTDTVKEFWE--------A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             SCCSSCCEEEEEETTTTEEEEEEE--------C-SSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             cccccceEEEEEECCCCcEEEEec--------C-CCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence                 5799999999999888873        2 346899999999999988764 99999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.2e-29  Score=191.09  Aligned_cols=184  Identities=9%  Similarity=-0.001  Sum_probs=132.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      |+.|++|++.... ..+..+..|...+..++|+|.. .++.+||+++.|++|+|||+.+                   ++
T Consensus       156 d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~-g~~~~LaSgS~D~TIkIWDl~T-------------------Gk  214 (356)
T 2w18_A          156 DQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQ-GMQEALLGTTIMNNIVIWNLKT-------------------GQ  214 (356)
T ss_dssp             TCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEE-TSTTEEEEEETTSEEEEEETTT-------------------CC
T ss_pred             CCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccC-CCCceEEEecCCCcEEEEECCC-------------------Cc
Confidence            7889999974321 3466777888888888888721 2578999999999999999998                   66


Q ss_pred             ccccccCCc---cCeEEEEecCCCCceEE------------EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeec
Q 023643           82 PDGFLHGHD---GPAYDVKFYGGNEDALL------------LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN  146 (279)
Q Consensus        82 ~~~~~~~h~---~~v~~~~~~~~~~~~~l------------~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (279)
                      .++++.+|.   ..+.+++|+|++.  ++            ++|+.|++|++||+.+...   ...+..       .+ .
T Consensus       215 ~l~tL~g~~~~v~~v~~vafSpdG~--~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~---l~v~~~-------~~-p  281 (356)
T 2w18_A          215 LLKKMHIDDSYQASVCHKAYSEMGL--LFIVLSHPCAKESESLRSPVFQLIVINPKTTLS---VGVMLY-------CL-P  281 (356)
T ss_dssp             EEEEEECCC---CCCEEEEEEETTE--EEEEEC------------CCEEEEEEETTTTEE---EEEEEE-------CC-C
T ss_pred             EEEEEcCCCcceeeeEEEEECCCCC--EEEEeccCCCcceeeccCCCcEEEEEECCCCEE---EEEEEe-------ec-c
Confidence            677777643   4677889999986  55            6788999999999865321   111100       00 0


Q ss_pred             CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceE-EEEEcCCCcEEEEecCCCeE
Q 023643          147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH-CIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i  225 (279)
                      ..+..         .+.+..+  ++..+++++.|++|+|||+.+++++.++++|...+. +++|+|+|++|++|+.|++|
T Consensus       282 ~Gh~~---------~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          282 PGQAG---------RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             TTCCC---------CEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             CCCcc---------eeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            00000         1122333  377899999999999999999999999999987655 68999999999999999999


Q ss_pred             EEEeC
Q 023643          226 RIWDC  230 (279)
Q Consensus       226 ~vwd~  230 (279)
                      +|||+
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.8e-27  Score=188.20  Aligned_cols=211  Identities=9%  Similarity=0.046  Sum_probs=163.2

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC---cEEEEeCCCCCcccccccCCcccceeee
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG---SITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      +.|++||+++.   ....+..|...|.+++|+|    ++++|++++.++   .|++||+.++                  
T Consensus       159 ~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Sp----dg~~la~~s~~~~~~~i~~~d~~tg------------------  213 (415)
T 2hqs_A          159 YELRVSDYDGY---NQFVVHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANG------------------  213 (415)
T ss_dssp             EEEEEEETTSC---SCEEEEEESSCEEEEEECT----TSSEEEEEECTTSSCEEEEEETTTC------------------
T ss_pred             ceEEEEcCCCC---CCEEEeCCCCcceeeEEcC----CCCEEEEEEecCCCcEEEEEECCCC------------------
Confidence            78999999863   3556777889999999999    999999998875   9999999873                  


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEE-EeeCCCc--EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGR--ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                       +. ..+..|.+.+.+++|+|+++  +|+ +++.|+.  |++||+++...    ..+..+.                   
T Consensus       214 -~~-~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~----~~l~~~~-------------------  266 (415)
T 2hqs_A          214 -AV-RQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI----RQVTDGR-------------------  266 (415)
T ss_dssp             -CE-EEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE----EECCCCS-------------------
T ss_pred             -cE-EEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCCE----EeCcCCC-------------------
Confidence             33 24556778899999999998  676 6766665  88999864321    1121111                   


Q ss_pred             CCCCCceeEEEcCCCCeEEEecC-CC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC---CeEEEEeC
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAG-DS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED---GTARIWDC  230 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~~i~vwd~  230 (279)
                         ..+.+++|+|+++.|++++. ++  .|++||+.+++.. .+..+...+.+++|+|+|++|++++.+   ..|++||+
T Consensus       267 ---~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          267 ---SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             ---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             ---CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence               12689999999998888775 44  6888899887643 455577789999999999999888764   58999999


Q ss_pred             CCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc---eEEeCC
Q 023643          231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN---YVILFS  279 (279)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~wd  279 (279)
                      .+++.. .+        ..+. .+.+++|+|+|++|++++.++   .|.+||
T Consensus       343 ~~~~~~-~l--------~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          343 ATGGVQ-VL--------SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             TTCCEE-EC--------CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEE-Ee--------cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            988764 34        2333 789999999999999988776   688775

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=3.5e-27  Score=182.52  Aligned_cols=172  Identities=13%  Similarity=0.187  Sum_probs=136.7

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +..+.+|...+..+.+++    ++++|++++.||+|++||+.++...               .........|.+.|.++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~---------------~~~~~~~~~~~~~v~~~~  203 (318)
T 4ggc_A          143 VATLSGHSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG---------------WVPLQTFTQHQGAVKAVA  203 (318)
T ss_dssp             EEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCBTTB---------------SCCSEEECCCCSCEEEEE
T ss_pred             EEEEcCccCceEEEEEcC----CCCEEEEEecCcceeEEECCCCccc---------------ccceeeecccCCceEEEE
Confidence            345667889999999999    8999999999999999999874321               122344556888999999


Q ss_pred             ecCCCCce-EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           98 FYGGNEDA-LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        98 ~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      ++|.+... .+++++.++.|++||.+....   .......                       ..+..+.|+|++..+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~-----------------------~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          204 WCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAH-----------------------SQVCSILWSPHYKELIS  257 (318)
T ss_dssp             ECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEEECS-----------------------SCEEEEEEETTTTEEEE
T ss_pred             ecCCCCcEEEEEecCCCCEEEEEecccccc---cccccce-----------------------eeeeeeeecccccceEE
Confidence            99987621 234677899999999764321   1111110                       13688999999998776


Q ss_pred             ec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          177 AA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       177 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      ++  .|+.|++||+++++++.++++|.+.|++++|+|++++|++|+.||+|+|||+.+..
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            54  79999999999999999999999999999999999999999999999999997654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=6.6e-27  Score=187.39  Aligned_cols=218  Identities=11%  Similarity=-0.014  Sum_probs=162.0

Q ss_pred             ceeeecc--ccccccceeeeeecccceEEEEECCC----------CCCCCCEEEEecCC------CcEEEEeCCCCCccc
Q 023643            4 DSTNWDE--DAYRKSILKEREILTRTVFRTVWGPS----------KDGSPDTIVIASSD------GSITSYSIPSCISKL   65 (279)
Q Consensus         4 ~v~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~   65 (279)
                      .+++||+  .+.+...-..+.+|...+..+++++.          ....+..++.++.+      ++|++||+..     
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----  168 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-----  168 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence            8999999  76653223567888888888777641          00025677766654      7999999974     


Q ss_pred             ccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC---cEEEeecCCCccCcceeeeccCcccceE
Q 023643           66 PLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG---RICGWRWKEFTESKVPINLQGNHVKPVL  142 (279)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~  142 (279)
                                     .....+.+|...+.+++|+|+++  +|++++.++   .|++||+++...    ..+..+.     
T Consensus       169 ---------------~~~~~l~~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~----~~l~~~~-----  222 (415)
T 2hqs_A          169 ---------------YNQFVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAV----RQVASFP-----  222 (415)
T ss_dssp             ---------------CSCEEEEEESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE----EEEECCS-----
T ss_pred             ---------------CCCEEEeCCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcE----EEeecCC-----
Confidence                           33456677889999999999998  999999875   999999875321    1111111     


Q ss_pred             EeecCCCCCccccCCCCCCceeEEEcCCCCeEE-EecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF-SAAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                                       ..+.+++|+|+++.|+ +++.++  .|++||+.+++. ..+..|...+.+++|+|+|++|+++
T Consensus       223 -----------------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          223 -----------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             -----------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             -----------------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence                             1268999999999877 666555  499999998876 5667788899999999999998887


Q ss_pred             cC-CC--eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc---ceEEeCC
Q 023643          220 SE-DG--TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT---NYVILFS  279 (279)
Q Consensus       220 ~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~wd  279 (279)
                      +. ++  .|.+||+.+++.. .+        ..+...+.+++|+|+|++|++++.+   ..|.+||
T Consensus       285 s~~~g~~~i~~~d~~~~~~~-~l--------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d  341 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQ-RI--------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  341 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCE-EC--------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEE-EE--------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEE
Confidence            76 44  6888899887643 33        3455678899999999999988764   5788875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=3e-25  Score=169.65  Aligned_cols=217  Identities=13%  Similarity=0.093  Sum_probs=159.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC-CCcccccccCCcccceeee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS-CISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~   79 (279)
                      .|+.|++||+++...   ..+..|...|.+++|+|    ++++|++++ ++.|++||+.+ ..                 
T Consensus        20 ~~~~i~~~d~~~~~~---~~~~~~~~~v~~~~~sp----dg~~l~~~~-~~~i~~~d~~~~~~-----------------   74 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKM---RVVWQTPELFEAPNWSP----DGKYLLLNS-EGLLYRLSLAGDPS-----------------   74 (297)
T ss_dssp             CCEEEEEEETTTTEE---EEEEEESSCCEEEEECT----TSSEEEEEE-TTEEEEEESSSCCS-----------------
T ss_pred             cceeEEEEeCCCCce---eeeccCCcceEeeEECC----CCCEEEEEc-CCeEEEEeCCCCCC-----------------
Confidence            378899999887643   34556889999999999    899999986 78999999987 42                 


Q ss_pred             ccccccccCC-ccCeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           80 IEPDGFLHGH-DGPAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        80 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        .......| ...+.+++|+|+++  +|++++  .++..+||.++.....  ...+....                   
T Consensus        75 --~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-------------------  129 (297)
T 2ojh_A           75 --PEKVDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT--PRLMTKNL-------------------  129 (297)
T ss_dssp             --CEECCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC--CEECCSSS-------------------
T ss_pred             --ceEeccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc--eEEeecCC-------------------
Confidence              12223333 46788999999998  888888  4456777765422111  11111110                   


Q ss_pred             CCCCCceeEEEcCCCCeEE-EecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCC-C
Q 023643          157 SPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCK-S  232 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~-~  232 (279)
                          .+..++|+|+++.|+ ++..++.+++|+++. ......+..+...+.+++|+|++++|+.++ .++.+++|++. .
T Consensus       130 ----~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~  205 (297)
T 2ojh_A          130 ----PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD  205 (297)
T ss_dssp             ----SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             ----CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC
Confidence                257889999999776 677889999998642 334455666888899999999999877665 58999999986 4


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc-----------ceEEeCC
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT-----------NYVILFS  279 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~wd  279 (279)
                      +.....+        ..|...+..++|+|++++|++++.+           +.|.+||
T Consensus       206 ~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d  255 (297)
T 2ojh_A          206 GSSVERI--------TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD  255 (297)
T ss_dssp             SSCEEEC--------CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred             CCCcEEE--------ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence            5556665        5666789999999999999988766           5688775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=5.1e-26  Score=182.91  Aligned_cols=218  Identities=9%  Similarity=-0.023  Sum_probs=149.4

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...+..+++++    ++.++++++.++ +++|+.......   .................. ..+...|.+++|+|+++ 
T Consensus        36 ~~~~n~lavs~----~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~-  105 (434)
T 2oit_A           36 KERSSLLAVSN----KYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNL-  105 (434)
T ss_dssp             CSCCBCEEEET----TTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSC-
T ss_pred             CCCccEEEEec----CCCEEEEECCCE-EEEEEchHhhhh---cccccCcccccccCcccc-ccCCCcccEEEEcCCCC-
Confidence            34688899999    889999999888 899886532110   000000000110111111 23667899999999998 


Q ss_pred             eEEE----EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC-CCeEEEecC
Q 023643          105 ALLL----SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ-GGAIFSAAG  179 (279)
Q Consensus       105 ~~l~----s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  179 (279)
                       +|+    +++.|+.|++||+++......      ....++..+...        ..|...|.+++|+|+ +.+|++++.
T Consensus       106 -~lav~~~sgs~d~~v~iwd~~~~~~~~~------~~~~~~~~~~~~--------~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A          106 -TLSACMMSSEYGSIIAFFDVRTFSNEAK------QQKRPFAYHKLL--------KDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             -EEEEEEEETTTEEEEEEEEHHHHHCTTC------SSCCCSEEEECC--------CSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             -EEEEEEeccCCCceEEEEEccccccCCc------CCcceeeeeecc--------CCCCCceEEEEECCCCCCEEEEEEC
Confidence             888    889999999999864311000      000000000000        001124799999998 789999999


Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      ||+|++||++++..+....+|...|++++|+|+|++|++|+.||.|++||++ ++....+..+... ...|...|.+++|
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~-~~~~~~~v~~v~w  248 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY-ESDHPVRVLDVLW  248 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC-CTTSCEEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc-CCCCceeEEEEEE
Confidence            9999999999987777777889999999999999999999999999999998 6666666433210 0134568999999


Q ss_pred             cCCCCEEEEE
Q 023643          260 DASESWLVRV  269 (279)
Q Consensus       260 ~~~~~~l~~~  269 (279)
                      ++++.++++.
T Consensus       249 ~~~~~~l~~~  258 (434)
T 2oit_A          249 IGTYVFAIVY  258 (434)
T ss_dssp             EETTEEEEEE
T ss_pred             ecCceEEEEE
Confidence            9988877653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=8.3e-24  Score=165.17  Aligned_cols=228  Identities=10%  Similarity=0.118  Sum_probs=152.7

Q ss_pred             CCceeeecccc-ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC-CcEEEEeCC--CCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDA-YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD-GSITSYSIP--SCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~   77 (279)
                      ||.|++|+++. .....+.. ..+...+.+++|+|    ++++|++++.+ +.|.+|++.  ++.               
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp----dg~~l~~~~~~~~~v~~~~~~~~~~~---------------   73 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGA---------------   73 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCC---------------
T ss_pred             CCeEEEEEECCCCcEEEeee-EecCCCCceEEECC----CCCEEEEeecCCCeEEEEEecCCCCc---------------
Confidence            78999999853 22222333 34677899999999    89988888776 999999997  321               


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        .+.+..+..+. .+..++|+|+++  +|++++ .++.|.+||++..............                    
T Consensus        74 --~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------------------  128 (343)
T 1ri6_A           74 --LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--------------------  128 (343)
T ss_dssp             --EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred             --eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC--------------------
Confidence              12223333333 678999999998  676555 5889999998421111111111110                    


Q ss_pred             CCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCC-CcEEE----Eeec-CCcceEEEEEcCCCcEEE-EecCCCeEEEE
Q 023643          157 SPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVES-SRIKM----VFKG-HSDYLHCIVARNSTNQIV-TGSEDGTARIW  228 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~----~~~~-~~~~i~~i~~~~~~~~l~-~~~~d~~i~vw  228 (279)
                         ..+.+++|+|+++++++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|++++++ ++..++.|.+|
T Consensus       129 ---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~  205 (343)
T 1ri6_A          129 ---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW  205 (343)
T ss_dssp             ---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence               1257899999999888776 889999999987 65432    2232 334788999999998765 55589999999


Q ss_pred             eCCC--Cce--EEEecCCccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeCC
Q 023643          229 DCKS--GKC--IKVIDPVKDKQLKGVISCVSCITLDASESWLV-RVRATNYVILFS  279 (279)
Q Consensus       229 d~~~--~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd  279 (279)
                      |+..  ++.  ...+.....  -......+..++|+|++++|+ ++..++.|.+||
T Consensus       206 ~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d  259 (343)
T 1ri6_A          206 ELKDPHGNIECVQTLDMMPE--NFSDTRWAADIHITPDGRHLYACDRTASLITVFS  259 (343)
T ss_dssp             ESSCTTSCCEEEEEEECSCT--TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCcEEEEeeccccCc--cccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence            9953  433  222211100  001134567899999998877 555799999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=6.3e-24  Score=175.18  Aligned_cols=240  Identities=12%  Similarity=0.041  Sum_probs=167.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeC--CCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSI--PSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ||+|++||.++.+  ++..+..+.. +..++|+|    ++++|++++.|++|++||+  .+                   
T Consensus       158 d~~V~v~D~~t~~--~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t-------------------  211 (543)
T 1nir_A          158 AGQIALVDGDSKK--IVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKE-------------------  211 (543)
T ss_dssp             GTEEEEEETTTCC--EEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSS-------------------
T ss_pred             CCeEEEEECCCce--EEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCC-------------------
Confidence            6899999988764  3566653323 88999999    9999999999999999999  55                   


Q ss_pred             ccccccccCCccCeEEEEecC----CCCceEEEEee-CCCcEEEeecCCCccCcceeeecc-------CcccceEEeec-
Q 023643           80 IEPDGFLHGHDGPAYDVKFYG----GNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQG-------NHVKPVLDLVN-  146 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-  146 (279)
                      .+.+..+.. ...+..++|+|    +++  +|++++ .+++|.+||..+.+....+.....       +....+..+.. 
T Consensus       212 ~~~~~~i~~-g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          212 PTKVAEIKI-GIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             CEEEEEEEC-CSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CcEEEEEec-CCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence            444555553 44578999999    998  888777 589999999865432221111000       00001111100 


Q ss_pred             C------------CCCCccc----------cCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeec----
Q 023643          147 H------------QHKGPWG----------ALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKG----  199 (279)
Q Consensus       147 ~------------~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~----  199 (279)
                      +            ..-..++          .......+..++|+|++++++++ ..+++|.+||+.+++++..+..    
T Consensus       289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence            0            0000000          11123346789999999977655 4588999999999999888874    


Q ss_pred             CCcceEEEEEcCC-CcEEEEec-CCCeEEEEeCCC-------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          200 HSDYLHCIVARNS-TNQIVTGS-EDGTARIWDCKS-------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       200 ~~~~i~~i~~~~~-~~~l~~~~-~d~~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      |.+....+ ++|+ +..++++. .|++|.+||+.+       .++++++        ..|...+..++|+|++++|++++
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l--------~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--------QGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE--------ECSCSCCCCEECCTTCCEEEECC
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE--------EcCCCCceEEEcCCCCCcEEEec
Confidence            54433333 4676 66677775 689999999988       7888888        56767788899999999999987


Q ss_pred             -------CcceEEeCC
Q 023643          271 -------ATNYVILFS  279 (279)
Q Consensus       271 -------~d~~i~~wd  279 (279)
                             .+++|.+||
T Consensus       440 ~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          440 TFNPDARISQSVAVFD  455 (543)
T ss_dssp             TTCSSHHHHTCEEEEE
T ss_pred             CCCCCcccCceEEEEE
Confidence                   277999996

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.9e-23  Score=161.55  Aligned_cols=215  Identities=11%  Similarity=0.087  Sum_probs=151.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|.|++||+++.+.  +.....+...+ .++|+|    +++++++++ .++.|.+||+.+.                   
T Consensus        19 ~~~v~~~d~~~~~~--~~~~~~~~~~~-~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~-------------------   72 (331)
T 3u4y_A           19 LRRISFFSTDTLEI--LNQITLGYDFV-DTAITS----DCSNVVVTSDFCQTLVQIETQLE-------------------   72 (331)
T ss_dssp             GTEEEEEETTTCCE--EEEEECCCCEE-EEEECS----SSCEEEEEESTTCEEEEEECSSS-------------------
T ss_pred             CCeEEEEeCcccce--eeeEEccCCcc-eEEEcC----CCCEEEEEeCCCCeEEEEECCCC-------------------
Confidence            68899999887643  44444555666 999999    888665554 5899999999873                   


Q ss_pred             cc-cccccCCccCeEEEEecCCCCceEEEEeeCCC---cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           81 EP-DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG---RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        81 ~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      +. ...+..+..+..+++|+|+++  +++++..++   .|.+||+++...   ...+....                   
T Consensus        73 ~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~-------------------  128 (331)
T 3u4y_A           73 PPKVVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKF---ISTIPIPY-------------------  128 (331)
T ss_dssp             SCEEEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEE---EEEEECCT-------------------
T ss_pred             ceeEEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCe---EEEEECCC-------------------
Confidence            33 444555666666699999998  888655553   899999864321   11111100                   


Q ss_pred             CCCCCceeEEEcCCCCeEEEe-cCCCe-EEEEecCCCcEE----EEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEe
Q 023643          157 SPVPENNAIAVDPQGGAIFSA-AGDSC-AYCWDVESSRIK----MVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWD  229 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd  229 (279)
                          ...+++|+|++++++++ ..++. |.+|++.....+    .........+..++|+|+|+++ +++..++.|++||
T Consensus       129 ----~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  204 (331)
T 3u4y_A          129 ----DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE  204 (331)
T ss_dssp             ----TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ----CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence                24789999999866655 45577 999998754332    1112334567999999999855 5556789999999


Q ss_pred             CCCCce---EEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          230 CKSGKC---IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       230 ~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      +.+++.   +..+.         ....+..++|+|+|++|++++ .++.|.+||
T Consensus       205 ~~~~~~~~~~~~~~---------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          205 TQNPENITLLNAVG---------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             CSSTTSCEEEEEEE---------CSSCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             CCCCcccceeeecc---------CCCCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            999888   66663         224567899999999776654 577888885

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=2.8e-23  Score=161.82  Aligned_cols=213  Identities=9%  Similarity=0.031  Sum_probs=149.9

Q ss_pred             CCCceeeeccccccccceeeeeeccc--ceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCccccee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTR--TVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .+|.|++||+.+.+.  +..+.....  .+..++|+|    +++++ +++..++.|.+||+.++                
T Consensus         9 ~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~----------------   66 (337)
T 1pby_B            9 RPDKLVVIDTEKMAV--DKVITIADAGPTPMVPMVAP----GGRIAYATVNKSESLVKIDLVTG----------------   66 (337)
T ss_dssp             TTTEEEEEETTTTEE--EEEEECTTCTTCCCCEEECT----TSSEEEEEETTTTEEEEEETTTC----------------
T ss_pred             CCCeEEEEECCCCcE--EEEEEcCCCCCCccceEEcC----CCCEEEEEeCCCCeEEEEECCCC----------------
Confidence            378999999887643  444432221  578899999    88655 56667899999999874                


Q ss_pred             eeccccccccC-----CccCeEEEEecCCCCceEEEEee------------CCCcEEEeecCCCccCcceeeeccCcccc
Q 023643           78 LGIEPDGFLHG-----HDGPAYDVKFYGGNEDALLLSCG------------DDGRICGWRWKEFTESKVPINLQGNHVKP  140 (279)
Q Consensus        78 ~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  140 (279)
                         +.+..+..     |...+..++|+|+++  +|++++            .++.|.+||+.+..   ....+....   
T Consensus        67 ---~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~---  135 (337)
T 1pby_B           67 ---ETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEAPR---  135 (337)
T ss_dssp             ---CEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEECCS---
T ss_pred             ---CeEeeEEcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCc---EEEEEeCCC---
Confidence               22222221     223567899999998  777775            57999999986432   111111100   


Q ss_pred             eEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec---------------------
Q 023643          141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG---------------------  199 (279)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------------  199 (279)
                                          .+.+++|+|++++++++  ++.|++||+.+++.+..+..                     
T Consensus       136 --------------------~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  193 (337)
T 1pby_B          136 --------------------QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             --------------------SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             --------------------CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeecc
Confidence                                14567778877777666  46677777776665544322                     


Q ss_pred             ---------------------------------------------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          200 ---------------------------------------------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       200 ---------------------------------------------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                                                                   +...+.+++|+|++++++++  ++.|.+||+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~  271 (337)
T 1pby_B          194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc
Confidence                                                         22235578999999999888  7999999999998


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..+..         ...+.+++|+|++++|++++.++.|.+||
T Consensus       272 ~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          272 SIKRVPL---------PHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEEC---------SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CcceecC---------CCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            8887732         13568899999999999999999999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.8e-23  Score=162.14  Aligned_cols=224  Identities=8%  Similarity=0.089  Sum_probs=149.7

Q ss_pred             CCceeeeccc--cccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDED--AYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      +|.|++|+++  +.....+..+..+. .+..++|+|    ++++|++++ .++.|.+|++..+..               
T Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~~~---------------  118 (343)
T 1ri6_A           59 EFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH----QGQFVFVGSYNAGNVSVTRLEDGLP---------------  118 (343)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT----TSSEEEEEETTTTEEEEEEEETTEE---------------
T ss_pred             CCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC----CCCEEEEEecCCCeEEEEECCCCcc---------------
Confidence            3789999987  44433444454433 789999999    888776655 588999999952110               


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCccee--eeccCcccceEEeecCCCCCcccc
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPI--NLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                       .+....+..+ ..+.+++|+|+++  ++++++ .++.|++||++.........  ......                  
T Consensus       119 -~~~~~~~~~~-~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------------------  176 (343)
T 1ri6_A          119 -VGVVDVVEGL-DGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE------------------  176 (343)
T ss_dssp             -EEEEEEECCC-TTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST------------------
T ss_pred             -ccccccccCC-CCceEEEECCCCC--EEEEecCCCCEEEEEEecCCCceeeecccccccCC------------------
Confidence             2233333333 3488899999998  777766 89999999986421111100  011000                  


Q ss_pred             CCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCC--CcE--EEEeec---C---CcceEEEEEcCCCcEEE-EecCCC
Q 023643          156 LSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVES--SRI--KMVFKG---H---SDYLHCIVARNSTNQIV-TGSEDG  223 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~--~~~--~~~~~~---~---~~~i~~i~~~~~~~~l~-~~~~d~  223 (279)
                         ...+..++|+|++++++++ ..++.|.+||+..  ++.  ...+..   .   ...+.+++|+|++++|+ ++..++
T Consensus       177 ---~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          177 ---GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS  253 (343)
T ss_dssp             ---TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ---CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence               0125789999999977554 4789999999953  432  222221   1   23567899999998776 556899


Q ss_pred             eEEEEeCC--CC--ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          224 TARIWDCK--SG--KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       224 ~i~vwd~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      .|.+||+.  ++  +.+..+        ..+.. +..++|+|++++|++++ .++.|.+|+
T Consensus       254 ~i~v~d~~~~~~~~~~~~~~--------~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          254 LITVFSVSEDGSVLSKEGFQ--------PTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEEEEECTTSCCEEEEEEE--------ECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEEEEEcCCCCceEEeeee--------cCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            99999998  32  334444        22222 78899999999888887 589999983

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=8.7e-23  Score=159.94  Aligned_cols=234  Identities=12%  Similarity=0.075  Sum_probs=155.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec-CCCcEEEEeCCCCCcccccc-cCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS-SDGSITSYSIPSCISKLPLG-LSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~   79 (279)
                      ++.|++|++++.....+.....+...+..++|+|    ++++|++++ .++.|.+|++........+. .....      
T Consensus        62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------  131 (347)
T 3hfq_A           62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG------  131 (347)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC------
T ss_pred             CceEEEEEecCCcEEEeeeeecCCCCCEEEEECC----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC------
Confidence            5789999997765455556566778899999999    899888777 78999999996421110000 00000      


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ..+.  ...+...+.+++|+|+++  ++++...++.|++|+++..........           +.....          
T Consensus       132 ~~p~--~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g~~~~~~~-----------~~~~~g----------  186 (347)
T 3hfq_A          132 HGPR--PEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAGQLSEQSV-----------LTMEAG----------  186 (347)
T ss_dssp             CCSS--TTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTSCEEEEEE-----------EECCTT----------
T ss_pred             CCCC--ccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCCcEEEeee-----------EEcCCC----------
Confidence            0000  111334588999999998  888888899999999862111111000           000000          


Q ss_pred             CCceeEEEcCCCCeEEE-ecCCCeEEEEecCC--CcE--EEEeecCC------cceEEEEEcCCCcEE-EEecCCCeEEE
Q 023643          160 PENNAIAVDPQGGAIFS-AAGDSCAYCWDVES--SRI--KMVFKGHS------DYLHCIVARNSTNQI-VTGSEDGTARI  227 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~--~~~~~~~~------~~i~~i~~~~~~~~l-~~~~~d~~i~v  227 (279)
                      ..+..++|+|+++++++ ...++.|.+|++..  ++.  +..+....      ..+..++|+|+|++| ++...++.|.+
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence            12468999999996655 56788999999874  443  22333222      458899999999977 55667899999


Q ss_pred             EeCCCC---ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cceEEeC
Q 023643          228 WDCKSG---KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TNYVILF  278 (279)
Q Consensus       228 wd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~w  278 (279)
                      |++...   +.+..+        ..+...+..++|+|+|++|++++. ++.|.+|
T Consensus       267 ~~~~~~g~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          267 FAVTADGHLTLIQQI--------STEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEECGGGCEEEEEEE--------ECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEECCCCcEEEeEEE--------ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            999732   334444        344456789999999998888765 4889998

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=1.3e-22  Score=158.88  Aligned_cols=215  Identities=14%  Similarity=0.101  Sum_probs=154.3

Q ss_pred             CCCceeeeccccccccceeeeeecc-cceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILT-RTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .++.|++||+++.+.  +..+..+. ..+..++|+|    +++++ +++..++.|.+||+.++                 
T Consensus        19 ~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~----dg~~~~v~~~~~~~i~~~d~~t~-----------------   75 (349)
T 1jmx_B           19 YPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMAP----DNRTAYVLNNHYGDIYGIDLDTC-----------------   75 (349)
T ss_dssp             TTTEEEEEETTTTEE--EEEEECSSCCSSCEEEECT----TSSEEEEEETTTTEEEEEETTTT-----------------
T ss_pred             CCCeEEEEECCCCcE--EEEEecCCCCCCceeEECC----CCCEEEEEeCCCCcEEEEeCCCC-----------------
Confidence            378999999887643  44444332 2578899999    88755 55667899999999873                 


Q ss_pred             eccccccccC-C-----ccCeEEEEecCCCCceEEEEeeCC------------CcEEEeecCCCccCcceeeeccCcccc
Q 023643           79 GIEPDGFLHG-H-----DGPAYDVKFYGGNEDALLLSCGDD------------GRICGWRWKEFTESKVPINLQGNHVKP  140 (279)
Q Consensus        79 ~~~~~~~~~~-h-----~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~  140 (279)
                        +.+..+.. +     ...+..++|+|+++  +|++++.+            +.|.+||+.+.............    
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----  147 (349)
T 1jmx_B           76 --KNTFHANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP----  147 (349)
T ss_dssp             --EEEEEEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC----
T ss_pred             --cEEEEEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC----
Confidence              33333321 1     23477899999998  88888765            89999998653222111111110    


Q ss_pred             eEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCC-------------------
Q 023643          141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-------------------  201 (279)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------  201 (279)
                                         ..+.+++|+|+++ +++++.  .|++||+.+++.+..+..+.                   
T Consensus       148 -------------------~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (349)
T 1jmx_B          148 -------------------RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS  205 (349)
T ss_dssp             -------------------SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred             -------------------CcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence                               0267899999999 666544  39999999888777664331                   


Q ss_pred             -------------------------------------------------cceEEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 023643          202 -------------------------------------------------DYLHCIVARN-STNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       202 -------------------------------------------------~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~  231 (279)
                                                                       ..+..++++| ++++++++  ++.|.+||+.
T Consensus       206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~  283 (349)
T 1jmx_B          206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK  283 (349)
T ss_dssp             TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred             cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence                                                             1345677889 99998888  8999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++.+..+..         ...+.+++|+|++++|++++.++.|.+||
T Consensus       284 ~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          284 QRKLIKAANL---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             TTEEEEEEEC---------SSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             cCeEEEEEcC---------CCCccceEECCCCCEEEEecCCCeEEEEe
Confidence            9998887742         12467899999999999898899999996

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.6e-23  Score=159.97  Aligned_cols=215  Identities=14%  Similarity=0.037  Sum_probs=153.8

Q ss_pred             CCceeeecccc-ccccceeeeeec-ccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDA-YRKSILKEREIL-TRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      +|.|++||+++ ...  ......+ ...+.+++|+|    ++++|++++  .++..+||.++..                
T Consensus        61 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~l~~~~~~----------------  118 (297)
T 2ojh_A           61 EGLLYRLSLAGDPSP--EKVDTGFATICNNDHGISP----DGALYAISDKVEFGKSAIYLLPST----------------  118 (297)
T ss_dssp             TTEEEEEESSSCCSC--EECCCTTCCCBCSCCEECT----TSSEEEEEECTTTSSCEEEEEETT----------------
T ss_pred             CCeEEEEeCCCCCCc--eEeccccccccccceEECC----CCCEEEEEEeCCCCcceEEEEECC----------------
Confidence            57899999887 543  3333334 47789999999    899999988  4456666665431                


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        ......+..+ ..+..++|+|+++  +|+ +++.|+.+++|+++....  ....+..+                    
T Consensus       119 --~~~~~~~~~~-~~~~~~~~spdg~--~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~--------------------  171 (297)
T 2ojh_A          119 --GGTPRLMTKN-LPSYWHGWSPDGK--SFTYCGIRDQVFDIYSMDIDSG--VETRLTHG--------------------  171 (297)
T ss_dssp             --CCCCEECCSS-SSEEEEEECTTSS--EEEEEEEETTEEEEEEEETTTC--CEEECCCS--------------------
T ss_pred             --CCceEEeecC-CCccceEECCCCC--EEEEEECCCCceEEEEEECCCC--cceEcccC--------------------
Confidence              1112233333 3488999999998  665 788899999999753211  11111111                    


Q ss_pred             CCCCCceeEEEcCCCCeEEEec-CCCeEEEEecC-CCcEEEEeecCCcceEEEEEcCCCcEEEEecCC-----------C
Q 023643          157 SPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVE-SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED-----------G  223 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------~  223 (279)
                        ...+.+++|+|+++.+++++ .++.+++|++. .+.....+..|...+.+++|+|++++|++++.+           +
T Consensus       172 --~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          172 --EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             --SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred             --CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence              11368999999999877665 58899999986 566677787788889999999999999888766           5


Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      .|.+||+.+++.......      .+|...+..++|+|++++|++++.+.
T Consensus       250 ~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          250 RVQLMDMDGGNVETLFDL------FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTSCSCEEEEEE------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEecCCCCceeeecc------CCCCcccccceECCCCCEEEEEEecc
Confidence            699999988766443311      35667788999999999998887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=8.5e-23  Score=164.22  Aligned_cols=170  Identities=10%  Similarity=0.051  Sum_probs=124.4

Q ss_pred             cccceEEEEECCCCCCCCCEEE----EecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIV----IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      +...|.+++|+|    ++++||    +|+.|++|+|||+.+......      .....  ......+.+|...|.+++|+
T Consensus        91 ~~~~v~~l~~sp----dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~------~~~~~--~~~~~~~~~h~~~V~~v~~~  158 (434)
T 2oit_A           91 MKFPIHHLALSC----DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK------QQKRP--FAYHKLLKDAGGMVIDMKWN  158 (434)
T ss_dssp             CSSCEEEEEECT----TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC------SSCCC--SEEEECCCSGGGSEEEEEEC
T ss_pred             CCCcccEEEEcC----CCCEEEEEEeccCCCceEEEEEccccccCCc------CCcce--eeeeeccCCCCCceEEEEEC
Confidence            456799999999    899999    789999999999875210000      00000  11234567799999999999


Q ss_pred             CC-CCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643          100 GG-NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus       100 ~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      |+ +.  +|++++.||+|++||+++.   .......+ +..                     .|.+++|+|++++|++|+
T Consensus       159 p~~~~--~las~s~Dg~v~iwD~~~~---~~~~~~~~-~~~---------------------~v~~v~wspdg~~lasgs  211 (434)
T 2oit_A          159 PTVPS--MVAVCLADGSIAVLQVTET---VKVCATLP-STV---------------------AVTSVCWSPKGKQLAVGK  211 (434)
T ss_dssp             SSCTT--EEEEEETTSCEEEEEESSS---EEEEEEEC-GGG---------------------CEEEEEECTTSSCEEEEE
T ss_pred             CCCCC--EEEEEECCCeEEEEEcCCC---cceeeccC-CCC---------------------ceeEEEEcCCCCEEEEEc
Confidence            98 55  9999999999999998753   11111111 111                     379999999999999999


Q ss_pred             CCCeEEEEecCCCcEEEEeecC-------CcceEEEEEcCCCcEEEEe-cCCC------eEEEEeCCCC
Q 023643          179 GDSCAYCWDVESSRIKMVFKGH-------SDYLHCIVARNSTNQIVTG-SEDG------TARIWDCKSG  233 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~-~~d~------~i~vwd~~~~  233 (279)
                      .||.|++||++ ++....+..|       ...+.+++|++++.++++. +.||      .+++|+++..
T Consensus       212 ~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          212 QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99999999998 6666665543       2389999999988777543 3343      3899999865

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=2.9e-23  Score=178.20  Aligned_cols=236  Identities=11%  Similarity=0.041  Sum_probs=160.4

Q ss_pred             ceeeeccccccccceeeeeecc----------------------cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCC
Q 023643            4 DSTNWDEDAYRKSILKEREILT----------------------RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC   61 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~----------------------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~   61 (279)
                      .|++||+++.+...+.....+.                      ..|.+++|+|    |+++|++++. +.|++||+.++
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP----DAQRLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT----TSSEEEEEET-TEEEEEESSSC
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC----CCCEEEEEeC-CcEEEEECCCC
Confidence            8999998876543222222222                      3488999999    9999999886 89999999873


Q ss_pred             CcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccce
Q 023643           62 ISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV  141 (279)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  141 (279)
                      .                 ......+..|...+..++|+|+++  +|+.++ ++.|++||+.....   ...... ....+
T Consensus       140 ~-----------------~~~~~~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~---~~~~~~-~~~~~  195 (741)
T 2ecf_A          140 G-----------------KAAVRQLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQ---MQLTAD-GSTTI  195 (741)
T ss_dssp             S-----------------TTSCCBCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEE---EECCCC-CCSSE
T ss_pred             C-----------------cceEEEcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCE---EEeccC-Cccce
Confidence            0                 003345566778899999999998  888887 56899999865321   111111 10000


Q ss_pred             EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC---------------------------------eEEEEec
Q 023643          142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS---------------------------------CAYCWDV  188 (279)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------------------------~i~i~d~  188 (279)
                      ..   .  ...|........+..++|+||+++|++++.|+                                 .|++||+
T Consensus       196 ~~---g--~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          196 GN---G--IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             EE---S--CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             ec---c--ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            00   0  00000000001247899999999999887665                                 8899999


Q ss_pred             CC-CcEEEEee--cCCcceEEEEEcCCCcEEEEecC-----CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          189 ES-SRIKMVFK--GHSDYLHCIVARNSTNQIVTGSE-----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       189 ~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      .+ ++......  .|...+..++| |+|++|+.++.     +..|++||+.+++....+..+.    ......+..++|+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----~~~~~~~~~~~~s  345 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS----PTWVPLHNSLRFL  345 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC----SSCCCCCSCCEEC
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC----CCcCCcCCceEEC
Confidence            98 87655443  37788999999 99999987653     6789999999998877663211    0111145688999


Q ss_pred             CCCCEEEEEcCcceEEeC
Q 023643          261 ASESWLVRVRATNYVILF  278 (279)
Q Consensus       261 ~~~~~l~~~~~d~~i~~w  278 (279)
                      |||+++++++.||.+.+|
T Consensus       346 pdg~~~~~~~~~g~~~l~  363 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLY  363 (741)
T ss_dssp             TTSCEEEEECTTSSCEEE
T ss_pred             CCCeEEEEecCCCccEEE
Confidence            999999999999877776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.2e-23  Score=176.72  Aligned_cols=238  Identities=11%  Similarity=0.014  Sum_probs=158.2

Q ss_pred             CCCceeeeccccccccceeeeeeccc---ceEEEEECCCCCCCCCEEEEecCC---------CcEEEEeCCCCCcccccc
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTR---TVFRTVWGPSKDGSPDTIVIASSD---------GSITSYSIPSCISKLPLG   68 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~   68 (279)
                      .||+|++||+++.+.  ...+..|..   .|.+++|+|    |+++|++++.+         +.|.+||+.++..     
T Consensus        35 ~dg~i~~~d~~~g~~--~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----  103 (723)
T 1xfd_A           35 QKGTVRLWNVETNTS--TVLIEGKKIESLRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-----  103 (723)
T ss_dssp             SSSCEEEBCGGGCCC--EEEECTTTTTTTTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-----
T ss_pred             CCCCEEEEECCCCcE--EEEeccccccccccceEEECC----CCCEEEEEecCccceeecceeeEEEEECCCCce-----
Confidence            378999999988753  334444543   499999999    99999998764         7788999987421     


Q ss_pred             cCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCC
Q 023643           69 LSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ  148 (279)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (279)
                                  ..+....+|...+..++|+|+++  .|+.++. +.|++|++.....   ...........+..    +
T Consensus       104 ------------~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~---~~~~~~~~~~~~~~----g  161 (723)
T 1xfd_A          104 ------------QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQA---IRVVSTGKEGVIYN----G  161 (723)
T ss_dssp             ------------EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCC---EEEECCCBTTTEEE----E
T ss_pred             ------------EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCce---EEEecCCCCCceEC----c
Confidence                        11233345666688999999998  8888876 7999999865321   11111111100000    0


Q ss_pred             CCCccc-cCCCCCCceeEEEcCCCCeEEEecCCC----------------------------------eEEEEecCCCcE
Q 023643          149 HKGPWG-ALSPVPENNAIAVDPQGGAIFSAAGDS----------------------------------CAYCWDVESSRI  193 (279)
Q Consensus       149 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~  193 (279)
                      .. .|. .......+.+++|+||++.|++++.++                                  .|++||+.+++.
T Consensus       162 ~~-~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~  240 (723)
T 1xfd_A          162 LS-DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH  240 (723)
T ss_dssp             EC-CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred             cc-ceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence            00 000 000001247899999999998876442                                  799999998876


Q ss_pred             EEEeecC------CcceEEEEEcCCCcEEEEecC----CCeEEEEeCCCCceEEEecCCccccccCcceee----eEEEE
Q 023643          194 KMVFKGH------SDYLHCIVARNSTNQIVTGSE----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCV----SCITL  259 (279)
Q Consensus       194 ~~~~~~~------~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~  259 (279)
                      ...+..+      ...+..++|+|||++|++.+.    +..|++||+.+++....+..       .+...+    ..++|
T Consensus       241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~~  313 (723)
T 1xfd_A          241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-------ESEAWLHRQNEEPVF  313 (723)
T ss_dssp             CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-------ECSSCCCCCCCCCEE
T ss_pred             eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-------ccCCEEeccCCCceE
Confidence            5666544      678899999999998876643    46799999999987766521       122233    37899


Q ss_pred             cCCCCEEEE--EcCcc------eEEeCC
Q 023643          260 DASESWLVR--VRATN------YVILFS  279 (279)
Q Consensus       260 ~~~~~~l~~--~~~d~------~i~~wd  279 (279)
                      +|||+.|+.  +..++      .|.+||
T Consensus       314 spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          314 SKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             cCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            999997775  44566      455554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=6.4e-22  Score=155.16  Aligned_cols=215  Identities=11%  Similarity=0.109  Sum_probs=156.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCE-EEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDT-IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|.|.+||.++.+.  +..+.. ...+..++|+|    ++++ +++...++.|.+||..++                   
T Consensus        68 ~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~-------------------  121 (353)
T 3vgz_A           68 GGVVYRLDPVTLEV--TQAIHN-DLKPFGATINN----TTQTLWFGNTVNSAVTAIDAKTG-------------------  121 (353)
T ss_dssp             SEEEEEECTTTCCE--EEEEEE-SSCCCSEEEET----TTTEEEEEETTTTEEEEEETTTC-------------------
T ss_pred             CccEEEEcCCCCeE--EEEEec-CCCcceEEECC----CCCEEEEEecCCCEEEEEeCCCC-------------------
Confidence            56899999887643  444442 34578899999    8885 455666899999999884                   


Q ss_pred             cccccccCCcc---------CeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           81 EPDGFLHGHDG---------PAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        81 ~~~~~~~~h~~---------~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                      +.+..+..+..         .+.++.|+|+++  ++++++  .++.|.+||+++..   ....+....            
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~------------  184 (353)
T 3vgz_A          122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIK---LKTAIQNTG------------  184 (353)
T ss_dssp             CEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTE---EEEEECCCC------------
T ss_pred             eeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCc---eEEEecCCC------------
Confidence            33333332221         268899999998  666554  58899999986432   111111000            


Q ss_pred             CCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec----CCcceEEEEEcCCCcEEEEec-CCCe
Q 023643          150 KGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG----HSDYLHCIVARNSTNQIVTGS-EDGT  224 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~-~d~~  224 (279)
                                ..+..++|+|+++.+++++.++.|.+||+.+++.+..+..    +...+..++|+|++++++.++ .++.
T Consensus       185 ----------~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          185 ----------KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE  254 (353)
T ss_dssp             ----------TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred             ----------CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence                      0146889999999999999999999999999998887764    455688999999998766555 4599


Q ss_pred             EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643          225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS  279 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd  279 (279)
                      |.+||+.+++.+..+...        .  ...++|+|++++++++ ..++.|.+||
T Consensus       255 v~~~d~~~~~~~~~~~~~--------~--~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          255 VLVVDTRNGNILAKVAAP--------E--SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EEEEETTTCCEEEEEECS--------S--CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCcEEEEEEcC--------C--CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            999999999988887431        1  1468999999965554 4789999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=6.7e-22  Score=153.80  Aligned_cols=229  Identities=10%  Similarity=0.022  Sum_probs=153.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC---cEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG---SITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      ++.|++||+++... .......+..+..+++|+|    ++++|+++..++   .|.+||+.+                  
T Consensus        61 ~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~~i~v~d~~~------------------  117 (331)
T 3u4y_A           61 CQTLVQIETQLEPP-KVVAIQEGQSSMADVDITP----DDQFAVTVTGLNHPFNMQSYSFLK------------------  117 (331)
T ss_dssp             TCEEEEEECSSSSC-EEEEEEECSSCCCCEEECT----TSSEEEECCCSSSSCEEEEEETTT------------------
T ss_pred             CCeEEEEECCCCce-eEEecccCCCCccceEECC----CCCEEEEecCCCCcccEEEEECCC------------------
Confidence            56899999887642 1445555666665599999    899998665553   899999987                  


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCc-EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGR-ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS  157 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (279)
                       ++.+..+..+ ....+++|+|+++ .++++...++. |.+|+++....   ......       ... ..         
T Consensus       118 -~~~~~~~~~~-~~~~~~~~spdg~-~l~~~~~~~~~~i~~~~~~~~g~---~~~~~~-------~~~-~~---------  174 (331)
T 3u4y_A          118 -NKFISTIPIP-YDAVGIAISPNGN-GLILIDRSSANTVRRFKIDADGV---LFDTGQ-------EFI-SG---------  174 (331)
T ss_dssp             -TEEEEEEECC-TTEEEEEECTTSS-CEEEEEETTTTEEEEEEECTTCC---EEEEEE-------EEE-CS---------
T ss_pred             -CCeEEEEECC-CCccceEECCCCC-EEEEEecCCCceEEEEEECCCCc---EeecCC-------ccc-cC---------
Confidence             3444444433 3468999999997 24455566688 99999864211   000000       000 00         


Q ss_pred             CCCCceeEEEcCCCCeEEE-ecCCCeEEEEecCCCcE---EEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCC
Q 023643          158 PVPENNAIAVDPQGGAIFS-AAGDSCAYCWDVESSRI---KMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKS  232 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~  232 (279)
                       ......++|+|+++++++ +..++.|++||+.+++.   +..+.. ...+..++|+|+|++++.+ ..++.|.+||+.+
T Consensus       175 -~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          175 -GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             -SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             -CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence             012578999999996654 45689999999999887   777764 4667899999999976555 4588899999999


Q ss_pred             Cce--EEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643          233 GKC--IKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS  279 (279)
Q Consensus       233 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd  279 (279)
                      ++.  +..+...... ..........++|+|++++|+++ ..++.|.+||
T Consensus       253 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          253 GTLSFVKSFGHGLLI-DPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             TEEEEEEEEECCCCC-CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             Cceeeeccccccccc-CCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            877  4333211000 00111122568999999988655 4567999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=3.1e-22  Score=165.17  Aligned_cols=231  Identities=10%  Similarity=0.057  Sum_probs=160.5

Q ss_pred             CCceeeeccccccccceeeeee----------ccc-ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccC
Q 023643            2 CGDSTNWDEDAYRKSILKEREI----------LTR-TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      +++|++||.++.+  .++.+..          |.+ .+.++.++|.   .+.++++...+++|.+||+.+....      
T Consensus       247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~---~~~~~vs~~~~g~i~vvd~~~~~~l------  315 (543)
T 1nir_A          247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHE---HPEFIVNVKETGKVLLVNYKDIDNL------  315 (543)
T ss_dssp             SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSS---SSEEEEEETTTTEEEEEECTTSSSC------
T ss_pred             CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCC---CCEEEEEECCCCeEEEEEecCCCcc------
Confidence            6889999987654  3444432          333 7899999993   4556777888999999999873210      


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCceEEEE-eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLS-CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                                 .+..+ .+...+..+.|+|+++  +|++ +..+++|.+||+.+.+   ....+.....         .+
T Consensus       316 -----------~~~~i-~~~~~~~~~~~spdg~--~l~va~~~~~~v~v~D~~tg~---l~~~i~~g~~---------ph  369 (543)
T 1nir_A          316 -----------TVTSI-GAAPFLHDGGWDSSHR--YFMTAANNSNKVAVIDSKDRR---LSALVDVGKT---------PH  369 (543)
T ss_dssp             -----------EEEEE-ECCSSCCCEEECTTSC--EEEEEEGGGTEEEEEETTTTE---EEEEEECSSS---------BC
T ss_pred             -----------eeEEe-ccCcCccCceECCCCC--EEEEEecCCCeEEEEECCCCe---EEEeeccCCC---------CC
Confidence                       00122 2455677899999998  6654 4568999999987542   2222221100         00


Q ss_pred             CCccccCCCCCCceeEEEcCC-CCeEEEec-CCCeEEEEecCC-------CcEEEEeecCCcceEEEEEcCCCcEEEEec
Q 023643          150 KGPWGALSPVPENNAIAVDPQ-GGAIFSAA-GDSCAYCWDVES-------SRIKMVFKGHSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  220 (279)
                               ......+ ++|+ +..++++. .|++|.+||+.+       ++.++++..|...+..++++|++++|++++
T Consensus       370 ---------~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          370 ---------PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             ---------CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             ---------CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence                     0001222 4677 55566665 589999999998       899999999998899999999999999987


Q ss_pred             -------CCCeEEEEeCCCCceE-EEecCCccccccCcceeeeEEEEcCCCCEEEEE-----cCcceEEeCC
Q 023643          221 -------EDGTARIWDCKSGKCI-KVIDPVKDKQLKGVISCVSCITLDASESWLVRV-----RATNYVILFS  279 (279)
Q Consensus       221 -------~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~~wd  279 (279)
                             .+++|.|||+.+++.. ..+....-..+..+...+..+.|+|+|+.|+.+     +.|+.|.|||
T Consensus       440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence                   2779999999998877 444211101113456789999999999998866     2479999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=3.5e-21  Score=150.94  Aligned_cols=212  Identities=14%  Similarity=0.059  Sum_probs=153.6

Q ss_pred             CCceeeeccccccccceeeeeeccc---------ceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTR---------TVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      ++.|.+||.++.+.  +..+..+..         .+.+++|+|    +++++++++  .++.|.+||..+          
T Consensus       110 ~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~i~~~d~~~----------  173 (353)
T 3vgz_A          110 NSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADD----ATNTVYISGIGKESVIWVVDGGN----------  173 (353)
T ss_dssp             TTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEET----TTTEEEEEEESSSCEEEEEETTT----------
T ss_pred             CCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECC----CCCEEEEEecCCCceEEEEcCCC----------
Confidence            57899999887643  344433321         278899999    888777665  578999999987          


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                               ++.+..+..+...+.+++|+|+++  ++++++.++.|.+||+.+...   .........            
T Consensus       174 ---------~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~------------  227 (353)
T 3vgz_A          174 ---------IKLKTAIQNTGKMSTGLALDSEGK--RLYTTNADGELITIDTADNKI---LSRKKLLDD------------  227 (353)
T ss_dssp             ---------TEEEEEECCCCTTCCCCEEETTTT--EEEEECTTSEEEEEETTTTEE---EEEEECCCS------------
T ss_pred             ---------CceEEEecCCCCccceEEECCCCC--EEEEEcCCCeEEEEECCCCeE---EEEEEcCCC------------
Confidence                     444455554555678899999998  899999999999999865321   111111000            


Q ss_pred             CccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEE
Q 023643          151 GPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIW  228 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vw  228 (279)
                            .+...+..++|+|+++.+++++. ++.|.+||+.+++.+..+.....  ..++|+|+++++ ++...++.|.+|
T Consensus       228 ------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          228 ------GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             ------SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ------CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEE
Confidence                  00112578999999997776654 59999999999998888775432  579999999865 455579999999


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      |+.+++.+..+..         ...+.+++|+|++++|+++..+
T Consensus       300 d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          300 DAKSYKVVKTFDT---------PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ETTTTEEEEEEEC---------CSEEEEEEECTTSCEEEEEEEC
T ss_pred             ECCCCeEEEEEec---------CCCCCeEEEcCCCCEEEEEEcc
Confidence            9999998888742         2357899999999977766544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=4.1e-21  Score=150.43  Aligned_cols=239  Identities=11%  Similarity=0.077  Sum_probs=150.4

Q ss_pred             CCceeeeccccc--cccceeeeeecccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAY--RKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      ++.|.+|+++..  ....+ ....+......++|+|    ++++++++.  .++.|.+|++.++.               
T Consensus        15 ~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~sp----dg~l~~~~~~~~~~~v~~~~~~~g~---------------   74 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALSA----KDCLYSVDKEDDEGGIAAWQIDGQT---------------   74 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEECT----TCEEEEEEEETTEEEEEEEEEETTE---------------
T ss_pred             CCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEcc----CCeEEEEEecCCCceEEEEEecCCc---------------
Confidence            345778776543  22222 2334557788899999    888444443  26899999997532               


Q ss_pred             eeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           78 LGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        78 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                        .+.+..+..+...+..++|+|+++  +|++++ .++.|++|+++.............           .. ..+. ..
T Consensus        75 --~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-----------~~-~~p~-~~  137 (347)
T 3hfq_A           75 --AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVMKIAADGALTLTDTVQH-----------SG-HGPR-PE  137 (347)
T ss_dssp             --EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----------CC-CCSS-TT
T ss_pred             --EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEEEeCCCCCeeecceeec-----------CC-CCCC-cc
Confidence              123333344667788999999998  787777 789999999853211111111110           00 0000 00


Q ss_pred             CCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-CCcEEE--EeecC-CcceEEEEEcCCCcEEEE-ecCCCeEEEEeCC
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRIKM--VFKGH-SDYLHCIVARNSTNQIVT-GSEDGTARIWDCK  231 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~~~-~~~i~~i~~~~~~~~l~~-~~~d~~i~vwd~~  231 (279)
                      .....+.+++|+|+++++++...++.|.+||+. +++...  .+..+ ...+..++|+|+|+++++ +..++.|.+|++.
T Consensus       138 ~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          138 QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            111236889999999966666778999999998 554332  22322 236788999999996554 6778999999987


Q ss_pred             C--CceE--EEecCCccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeCC
Q 023643          232 S--GKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLV-RVRATNYVILFS  279 (279)
Q Consensus       232 ~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd  279 (279)
                      .  ++..  ..+..... . ......+..++|+|+|++|+ +...++.|.+|+
T Consensus       218 ~~~g~~~~~~~~~~~~~-~-~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~  268 (347)
T 3hfq_A          218 TQTGAFTQLGIVKTIPA-D-YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA  268 (347)
T ss_dssp             TTTTEEEEEEEEESSCT-T-CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred             CCCCceEEeeeeeecCC-C-CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence            4  5432  22211100 0 01114588999999999874 556689999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=5.2e-22  Score=176.10  Aligned_cols=212  Identities=12%  Similarity=0.053  Sum_probs=163.5

Q ss_pred             CCceeeeccccccccceeeeee-----------cccceEEEEEC-CCCCCCCCEEEEecCCCcEEEEeCCCCCccccccc
Q 023643            2 CGDSTNWDEDAYRKSILKEREI-----------LTRTVFRTVWG-PSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGL   69 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   69 (279)
                      ++.|++|+++...   +..+..           |...+.+++|+ |    ++++|++++ ++.|.+|++...        
T Consensus       264 ~~~i~~~d~~~~~---l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p----dG~~la~~~-~~~i~~~~~~~~--------  327 (1045)
T 1k32_A          264 GGSIYIFNPDTEK---IEKIEIGDLESPEDRIISIPSKFAEDFSPL----DGDLIAFVS-RGQAFIQDVSGT--------  327 (1045)
T ss_dssp             TTEEEEECTTTCC---EEECCCCCCCBCCSEEEECGGGGEEEEEEC----GGGCEEEEE-TTEEEEECTTSS--------
T ss_pred             CCEEEEecCCceE---eeeeccCcccccccccccccccceeeecCC----CCCEEEEEE-cCEEEEEcCCCC--------
Confidence            5778889874432   223332           44579999999 9    899998887 789999998863        


Q ss_pred             CCcccceeeeccccccccCCcc-CeEEEEecCCCCceEEEEeeCCCcEE-EeecCCCccCcceeeeccCcccceEEeecC
Q 023643           70 SNSKVQQLLGIEPDGFLHGHDG-PAYDVKFYGGNEDALLLSCGDDGRIC-GWRWKEFTESKVPINLQGNHVKPVLDLVNH  147 (279)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (279)
                                 .. ..+..|.. .+..++|+ +++  .|++++.++.+. +|++....    ...+.+ +.         
T Consensus       328 -----------~~-~~~~~~~~~~~~~~~~s-dg~--~l~~~s~~~~l~~~~d~~~~~----~~~l~~-~~---------  378 (1045)
T 1k32_A          328 -----------YV-LKVPEPLRIRYVRRGGD-TKV--AFIHGTREGDFLGIYDYRTGK----AEKFEE-NL---------  378 (1045)
T ss_dssp             -----------BE-EECSCCSCEEEEEECSS-SEE--EEEEEETTEEEEEEEETTTCC----EEECCC-CC---------
T ss_pred             -----------ce-EEccCCCcceEEeeeEc-CCC--eEEEEECCCceEEEEECCCCC----ceEecC-Cc---------
Confidence                       22 23445666 89999999 876  888888888888 88875321    111111 11         


Q ss_pred             CCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC----
Q 023643          148 QHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG----  223 (279)
Q Consensus       148 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----  223 (279)
                                  ..+..++|+|++++|++++.++.|++||+.+++....+..|...+.+++|+|+|++|++++.++    
T Consensus       379 ------------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~  446 (1045)
T 1k32_A          379 ------------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET  446 (1045)
T ss_dssp             ------------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             ------------cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccc
Confidence                        1368999999999999999999999999999998888878999999999999999998887654    


Q ss_pred             ------eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          224 ------TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       224 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .|++||+.+++ ...+        ..|...+..++|+|+|++|+.++.++...+|+
T Consensus       447 ~~~~~~~i~l~d~~~g~-~~~l--------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          447 DGYVMQAIHVYDMEGRK-IFAA--------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             CSCCEEEEEEEETTTTE-EEEC--------SCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cCCCCCeEEEEECCCCc-EEEe--------eCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence                  89999999887 4555        46666788899999999999998876655553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7e-20  Score=144.19  Aligned_cols=237  Identities=7%  Similarity=0.042  Sum_probs=148.9

Q ss_pred             CCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCcccc
Q 023643            2 CGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         2 dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      ++.|.+|.++.  .....+...  +......++|+|    ++++|++++.+    +.|.+|++......           
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~sp----dg~~l~~~~~~~~~~~~v~~~~~~~~~g~-----------   88 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSA----DGKFVYSVNEFSKDQAAVSAFAFDKEKGT-----------   88 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECT----TSSEEEEEECCSSTTCEEEEEEEETTTTE-----------
T ss_pred             CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECC----CCCEEEEEEccCCCCCcEEEEEEeCCCCc-----------
Confidence            46788887653  332233333  667788899999    89999888875    79999998752100           


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                          .+.+.....+......+++  +++  +|++++ .++.|.+|++..............           .....+..
T Consensus        89 ----~~~~~~~~~~~~~p~~~~~--dg~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-----------~~g~~~~~  149 (361)
T 3scy_A           89 ----LHLLNTQKTMGADPCYLTT--NGK--NIVTANYSGGSITVFPIGQDGALLPASDVIE-----------FKGSGPDK  149 (361)
T ss_dssp             ----EEEEEEEECSSSCEEEEEE--CSS--EEEEEETTTTEEEEEEBCTTSCBCSCSEEEE-----------CCCCCSCT
T ss_pred             ----EEEeeEeccCCCCcEEEEE--CCC--EEEEEECCCCEEEEEEeCCCCcCcccceeEE-----------ccCCCCCc
Confidence                1222333334556677777  565  555554 689999999864322111111000           00001111


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCc-------EE------EEeecCCcceEEEEEcCCCcEEEEec
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR-------IK------MVFKGHSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~-------~~------~~~~~~~~~i~~i~~~~~~~~l~~~~  220 (279)
                      .......+.+++|+|+++++++++ .++.|.+|++....       ..      .....+...+..++|+|+|+++++++
T Consensus       150 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  229 (361)
T 3scy_A          150 ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN  229 (361)
T ss_dssp             TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc
Confidence            111122367899999999665554 58899999887533       11      11223445678999999999876666


Q ss_pred             -CCCeEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEcC--cceEEeCC
Q 023643          221 -EDGTARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA--TNYVILFS  279 (279)
Q Consensus       221 -~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd  279 (279)
                       .++.|.+||+.+++..  ..+...     ..+......++|+|||++|+++..  ++.|.+|+
T Consensus       230 ~~~~~v~v~~~~~g~~~~~~~~~~~-----~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          230 EIGGTVIAFRYADGMLDEIQTVAAD-----TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             TTTCEEEEEEEETTEEEEEEEEESC-----SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCCeEEEEEecCCceEEeEEEecC-----CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence             6999999999877542  222211     233345689999999999876655  48899985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.8e-22  Score=170.85  Aligned_cols=201  Identities=8%  Similarity=-0.005  Sum_probs=146.1

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc---CeEEEEecCCCC
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG---PAYDVKFYGGNE  103 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~  103 (279)
                      .+.+++|+|    +++++++ +.||+|++||+.+                   ++....+..|..   .|.+++|+|+++
T Consensus        18 ~~~~~~~sp----dg~~~~~-~~dg~i~~~d~~~-------------------g~~~~~~~~~~~~~~~v~~~~~SpDg~   73 (723)
T 1xfd_A           18 HDPEAKWIS----DTEFIYR-EQKGTVRLWNVET-------------------NTSTVLIEGKKIESLRAIRYEISPDRE   73 (723)
T ss_dssp             CCCCCCBSS----SSCBCCC-CSSSCEEEBCGGG-------------------CCCEEEECTTTTTTTTCSEEEECTTSS
T ss_pred             cccccEEcC----CCcEEEE-eCCCCEEEEECCC-------------------CcEEEEeccccccccccceEEECCCCC
Confidence            467889999    8997766 7899999999988                   344444555543   489999999998


Q ss_pred             ceEEEEeeCC---------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643          104 DALLLSCGDD---------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus       104 ~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                        +|++++.+         +.+.+||+.+... .......+ +                     ...+..++|+|+|+.|
T Consensus        74 --~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~-~---------------------~~~~~~~~~SPdG~~l  128 (723)
T 1xfd_A           74 --YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV-S---------------------NAKLQYAGWGPKGQQL  128 (723)
T ss_dssp             --EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC-C---------------------SCCCSBCCBCSSTTCE
T ss_pred             --EEEEEecCccceeecceeeEEEEECCCCce-EeccCCcc-c---------------------cccccccEECCCCCEE
Confidence              89988764         7788999875421 11111000 0                     0125788999999999


Q ss_pred             EEecCCCeEEEEecCCCcEEEEeecCCcce------------------EEEEEcCCCcEEEEecCCC-------------
Q 023643          175 FSAAGDSCAYCWDVESSRIKMVFKGHSDYL------------------HCIVARNSTNQIVTGSEDG-------------  223 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i------------------~~i~~~~~~~~l~~~~~d~-------------  223 (279)
                      +.++. +.|++||+.+++.......+...+                  .+++|+|||++|++++.|+             
T Consensus       129 a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          129 IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            98885 799999999988777665544333                  7899999999999887553             


Q ss_pred             ---------------------eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC----cceEEeC
Q 023643          224 ---------------------TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA----TNYVILF  278 (279)
Q Consensus       224 ---------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~w  278 (279)
                                           .|++||+.+++....+..+.  .+..+...+..++|+|||++|++.+.    +..|.+|
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  285 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc--cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEE
Confidence                                 79999999887655653211  01234678999999999998877643    3577777


Q ss_pred             C
Q 023643          279 S  279 (279)
Q Consensus       279 d  279 (279)
                      |
T Consensus       286 d  286 (723)
T 1xfd_A          286 D  286 (723)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=1.5e-21  Score=167.65  Aligned_cols=216  Identities=13%  Similarity=0.039  Sum_probs=146.2

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecC-CC-----cEEEEeCCCCCcccccccCCcc-cceeee--cccc---ccccCCccC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASS-DG-----SITSYSIPSCISKLPLGLSNSK-VQQLLG--IEPD---GFLHGHDGP   92 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~h~~~   92 (279)
                      ...+.+++|+|    ||++|++++. |+     .|++||+.++.....+...... ....+.  .+..   ..+. ....
T Consensus        36 ~~~~~~~~~Sp----dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  110 (741)
T 2ecf_A           36 GPTLMKPKVAP----DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTG  110 (741)
T ss_dssp             CCCCEEEEECT----TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEE
T ss_pred             CCCCCCceEec----CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccC
Confidence            45799999999    9999999988 88     8999999885432222111000 000000  0000   0000 0134


Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      +.+++|+|+++  +|++++. +.|++||+...... ....+..+                      ...+..++|+|+|+
T Consensus       111 v~~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~-~~~~l~~~----------------------~~~~~~~~~SPDG~  164 (741)
T 2ecf_A          111 IVDYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKA-AVRQLTHG----------------------EGFATDAKLSPKGG  164 (741)
T ss_dssp             SCCCEECTTSS--EEEEEET-TEEEEEESSSCSTT-SCCBCCCS----------------------SSCEEEEEECTTSS
T ss_pred             cceeEECCCCC--EEEEEeC-CcEEEEECCCCCcc-eEEEcccC----------------------CcccccccCCCCCC
Confidence            78899999998  8888886 99999998753100 11111111                      01368999999999


Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeecCCcc----------------eEEEEEcCCCcEEEEecCCC-------------
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDY----------------LHCIVARNSTNQIVTGSEDG-------------  223 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------------i~~i~~~~~~~~l~~~~~d~-------------  223 (279)
                      +|+.++ ++.|++||+.+++.......+...                +..++|+|||++|++++.|+             
T Consensus       165 ~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p  243 (741)
T 2ecf_A          165 FVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA  243 (741)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS
T ss_pred             EEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCC
Confidence            999887 468999999988776655444332                47799999999999987765             


Q ss_pred             --------------------eEEEEeCCC-CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-----cceEEe
Q 023643          224 --------------------TARIWDCKS-GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-----TNYVIL  277 (279)
Q Consensus       224 --------------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~  277 (279)
                                          .|.+||+.+ ++.......      ..|...+..++| |||++|++++.     +..|.+
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~  316 (741)
T 2ecf_A          244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE  316 (741)
T ss_dssp             SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE
T ss_pred             CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE
Confidence                                789999988 776544321      247788999999 99999997653     567777


Q ss_pred             CC
Q 023643          278 FS  279 (279)
Q Consensus       278 wd  279 (279)
                      ||
T Consensus       317 ~d  318 (741)
T 2ecf_A          317 VT  318 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=1e-20  Score=161.55  Aligned_cols=223  Identities=11%  Similarity=0.039  Sum_probs=153.1

Q ss_pred             CCceeeecccc-----ccccceeeeeecccc--------------eEEEEECCCCCCCCCEEEEec--------------
Q 023643            2 CGDSTNWDEDA-----YRKSILKEREILTRT--------------VFRTVWGPSKDGSPDTIVIAS--------------   48 (279)
Q Consensus         2 dG~v~iw~~~~-----~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~l~~~~--------------   48 (279)
                      |+.|++|++++     ...  ......+...              +.+++|+|    |+++|++++              
T Consensus       140 ~~~i~v~~~~~~~~~~g~~--~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp----Dg~~la~~~~d~~~~~~~~~~~~  213 (706)
T 2z3z_A          140 NHNLYIARGGKLGEGMSRA--IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP----KGSCLAFYRMDQSMVKPTPIVDY  213 (706)
T ss_dssp             TTEEEEEECBCTTSCCCCC--EESCSCCBTTEEESSCCGGGCTTCCCSEEECT----TSSEEEEEEEECTTSCCEEEEEC
T ss_pred             CCeEEEEecCcccccCCCc--EEeccCCCCCeEcccchhhhhcCCCceEEECC----CCCEEEEEEECCCCCceEEeecc
Confidence            67899999887     542  2222222222              48899999    999999987              


Q ss_pred             -------------------CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEE
Q 023643           49 -------------------SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLS  109 (279)
Q Consensus        49 -------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  109 (279)
                                         .+..|.+||+.++..                 ..+.....|...+..++|+|+++  .|++
T Consensus       214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-----------------~~~~~~~~~~~~~~~~~~spdg~--~l~~  274 (706)
T 2z3z_A          214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-----------------VYLQTGEPKEKFLTNLSWSPDEN--ILYV  274 (706)
T ss_dssp             CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-----------------EECCCCSCTTCEEEEEEECTTSS--EEEE
T ss_pred             CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-----------------EeeccCCCCceeEeeEEEECCCC--EEEE
Confidence                               446799999987321                 11111224677899999999998  8888


Q ss_pred             eeCCC-----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC--CCCeEEEecCCCe
Q 023643          110 CGDDG-----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP--QGGAIFSAAGDSC  182 (279)
Q Consensus       110 ~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~  182 (279)
                      ++.++     .|++||+.+..............               +     ...+..++|+|  ++++++++..++.
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~---------------~-----~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKH---------------Y-----VEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSS---------------C-----CCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCC---------------e-----ECccCCceeecCCCCEEEEEEccCCc
Confidence            87775     89999986531111111100000               0     00135789999  9999999999999


Q ss_pred             EEEEecC-CCcEEEEeecCCcceEE-EEEcCCCcEEEEe-cCCC----eEEEEeCCCCceEEEecCCccccccCcceeee
Q 023643          183 AYCWDVE-SSRIKMVFKGHSDYLHC-IVARNSTNQIVTG-SEDG----TARIWDCKSGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       183 i~i~d~~-~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~-~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      +++|+++ ++..+..+..+...+.. ++|+|+++.|+.+ +.++    .|..||+.+++ ...+         .+...+.
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l---------~~~~~~~  404 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL---------TPESGMH  404 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES---------CCSSSEE
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec---------cCCCceE
Confidence            9999886 67777888878777876 7999999877554 4444    67777877765 3343         2445688


Q ss_pred             EEEEcCCCCEEEEEcCc----ceEEeCC
Q 023643          256 CITLDASESWLVRVRAT----NYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d----~~i~~wd  279 (279)
                      .++|+|+|++|+.+..+    +.+.+||
T Consensus       405 ~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          405 RTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             EEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             EEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            99999999988876443    4588875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=1.2e-19  Score=142.80  Aligned_cols=240  Identities=10%  Similarity=0.020  Sum_probs=145.2

Q ss_pred             CCceeeecccc--ccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDA--YRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      +|.|++|+++.  .....+.....+......+++ .    ...++++...++.|.+|++.............     ...
T Consensus        74 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-d----g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~  143 (361)
T 3scy_A           74 QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-N----GKNIVTANYSGGSITVFPIGQDGALLPASDVI-----EFK  143 (361)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-C----SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-----ECC
T ss_pred             CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-C----CCEEEEEECCCCEEEEEEeCCCCcCcccceeE-----Ecc
Confidence            37899998765  333334444445556677777 4    33344444578999999997532211100000     000


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEe-eCCCcEEEeecCCCccC---c-ceeeeccCcccceEEeecCCCCCccc
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSC-GDDGRICGWRWKEFTES---K-VPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                      +......+.+...+.+++|+|+++  +++++ ..++.|++|+++.....   . ....  +    .........      
T Consensus       144 g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~--~----~~~~~~~~~------  209 (361)
T 3scy_A          144 GSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNANADNKEKFLTK--G----TPEAFKVAP------  209 (361)
T ss_dssp             CCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTCCTTTCCCCEEE--E----EEEEEECCT------
T ss_pred             CCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCCCcccccceeec--c----cccceecCC------
Confidence            000001122334578899999998  55554 45899999998643210   0 0000  0    000000000      


Q ss_pred             cCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCCcE--EEEee---cCCcceEEEEEcCCCcEEEEecC--CCeEE
Q 023643          155 ALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESSRI--KMVFK---GHSDYLHCIVARNSTNQIVTGSE--DGTAR  226 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~---~~~~~i~~i~~~~~~~~l~~~~~--d~~i~  226 (279)
                          ......++|+|+++++++++ .++.|.+||+.+++.  +..+.   .+......++|+|+|++|+++..  ++.|.
T Consensus       210 ----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          210 ----GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ----TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ----CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence                01257899999999887766 689999999987754  22332   23345689999999998866655  58999


Q ss_pred             EEeCC--CCc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceEEeC
Q 023643          227 IWDCK--SGK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYVILF  278 (279)
Q Consensus       227 vwd~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~w  278 (279)
                      +|++.  +++  .+..+        .. ...+..++|+|+|++|++++ .++.|.+|
T Consensus       286 v~~~~~~~g~~~~~~~~--------~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQ--------LT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             EEEECTTTCCEEEEEEE--------EC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCcEEEeeEe--------cC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            99986  444  33333        22 34577899999999888876 67888886

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.3e-21  Score=163.46  Aligned_cols=211  Identities=11%  Similarity=0.035  Sum_probs=149.1

Q ss_pred             CCceeeeccccccccceeeeeecc-cceEEEEECCCCCCCCCEEEEecC---CCcEEEEeCCC--CCcccccccCCcccc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILT-RTVFRTVWGPSKDGSPDTIVIASS---DGSITSYSIPS--CISKLPLGLSNSKVQ   75 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~   75 (279)
                      ||+++||++++...   ..+..|. ..+..++|+|    + +++++++.   +...++|.+..  .              
T Consensus        43 ~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~sp----d-~~l~~~~~~~g~~~~~l~~~~~~~~--------------  100 (582)
T 3o4h_A           43 EGSVNAYLYDGGET---VKLNREPINSVLDPHYGV----G-RVILVRDVSKGAEQHALFKVNTSRP--------------  100 (582)
T ss_dssp             TTEEEEEEEETTEE---EECCSSCCSEECEECTTC----S-EEEEEEECSTTSCCEEEEEEETTST--------------
T ss_pred             CCceeEEEEcCCCc---EeeecccccccccccCCC----C-eEEEEeccCCCCcceEEEEEeccCC--------------
Confidence            78999999876542   3333444 6899999999    7 67777664   45567766543  2              


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                          +... .+... ..+...+|+|+++...+++++.++ +.+||+.+...   . .+....                  
T Consensus       101 ----g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~---~-~l~~~~------------------  151 (582)
T 3o4h_A          101 ----GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL---R-ELARLP------------------  151 (582)
T ss_dssp             ----TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEE---E-EEEEES------------------
T ss_pred             ----Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcE---E-EeecCC------------------
Confidence                1111 11111 123456888887633555555554 55999864311   1 111000                  


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCC----CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC--eEEEEe
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGD----SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG--TARIWD  229 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd  229 (279)
                            ..+++|+|||+++++++.+    ..|++||+.+++.. .+..|...+..++|+|||++|+++..++  .|++||
T Consensus       152 ------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d  224 (582)
T 3o4h_A          152 ------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVD  224 (582)
T ss_dssp             ------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred             ------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEc
Confidence                  1578999999999987776    78999999988765 5677888899999999999999888888  899999


Q ss_pred             CCCCceEEEecCCccccccCcceeeeEEE--------EcCCCCEEEEEcCcceEEeCC
Q 023643          230 CKSGKCIKVIDPVKDKQLKGVISCVSCIT--------LDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.+++.. .+        ..|...+..++        |+|||.++++++.|+.+++|+
T Consensus       225 ~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          225 PRDGSVE-DL--------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             TTTCCEE-EC--------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCcEE-Ec--------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence            9998877 55        45555555566        999999899999999999984

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=2.8e-21  Score=165.07  Aligned_cols=225  Identities=11%  Similarity=0.012  Sum_probs=149.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC-----CCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS-----CISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~   76 (279)
                      |+.|++||+++.+.   ..+..+...+..++|+|    ++++||++ .++.|++|++.+     +..........   ..
T Consensus       100 ~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~Sp----dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~---~~  168 (706)
T 2z3z_A          100 QGGLVGFDMLARKV---TYLFDTNEETASLDFSP----VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT---ET  168 (706)
T ss_dssp             TTEEEEEETTTTEE---EEEECCTTCCTTCEECT----TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB---TT
T ss_pred             CCEEEEEECCCCce---EEccCCcccccCCcCCC----CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC---CC
Confidence            57899999887542   33444667789999999    99999985 679999999987     43221111000   00


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEee---------------------------------CCCcEEEeecCC
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG---------------------------------DDGRICGWRWKE  123 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iw~~~~  123 (279)
                      +..+.+  ..+.+...+.++.|+|+++  +|++++                                 .+..|++||+.+
T Consensus       169 ~~~g~~--~~~ee~~~~~~~~~SpDg~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          169 LVYGQA--VHQREFGIEKGTFWSPKGS--CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             EEESSC--CGGGCTTCCCSEEECTTSS--EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             eEcccc--hhhhhcCCCceEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            000000  1122234468899999998  888887                                 346688888754


Q ss_pred             CccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC-----eEEEEecCCCcEEEEee
Q 023643          124 FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS-----CAYCWDVESSRIKMVFK  198 (279)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~  198 (279)
                      ...   .......                    .+...+.+++|+|+++.|++++.++     .|++||+.+++....+.
T Consensus       245 ~~~---~~~~~~~--------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          245 GKT---VYLQTGE--------------------PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             TEE---EECCCCS--------------------CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             Cce---EeeccCC--------------------CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE
Confidence            311   0000000                    0112368999999999998877665     89999999984333332


Q ss_pred             -c-CCc---ceEEEEEcC--CCcEEEEecCCCeEEEEeCC-CCceEEEecCCccccccCcceeeeE-EEEcCCCCEEEEE
Q 023643          199 -G-HSD---YLHCIVARN--STNQIVTGSEDGTARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSC-ITLDASESWLVRV  269 (279)
Q Consensus       199 -~-~~~---~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~  269 (279)
                       . +..   .+.+++|+|  +|+++++++.|+.++||++. +++.+..+        ..+...+.. ++|+|+++.|+.+
T Consensus       302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l--------~~~~~~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          302 VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV--------TKGEWEVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC--------CCSSSCEEEEEEECTTSSEEEEE
T ss_pred             EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec--------CCCCeEEEeeeEEcCCCCEEEEE
Confidence             2 222   246789999  99999999999999999876 56666666        455556766 7999999887665


Q ss_pred             cCc
Q 023643          270 RAT  272 (279)
Q Consensus       270 ~~d  272 (279)
                      +.+
T Consensus       374 ~~~  376 (706)
T 2z3z_A          374 STE  376 (706)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=4e-21  Score=170.47  Aligned_cols=224  Identities=9%  Similarity=0.042  Sum_probs=160.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.++||..+... .....+..|. .+..++|+|    +++.|+.+ .++.|.+|++...... .  +....      ..
T Consensus       223 dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~Sp----DG~~la~~-~~~~i~~~d~~~~~l~-~--l~~~~------~~  286 (1045)
T 1k32_A          223 DGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNT----DGRRILFS-KGGSIYIFNPDTEKIE-K--IEIGD------LE  286 (1045)
T ss_dssp             TSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEE----SSSCEEEE-ETTEEEEECTTTCCEE-E--CCCCC------CC
T ss_pred             cCceEEEEEeCCC-CcceEecCCC-CcceeeEcC----CCCEEEEE-eCCEEEEecCCceEee-e--eccCc------cc
Confidence            5788899755321 1233344443 466789999    89988887 5889999998432110 0  00000      00


Q ss_pred             ccccccCCccCeEEEEec-CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFY-GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~-~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .......|...+.+++|+ |+++  +|++++ ++.|.+|++....    ...+..+...                     
T Consensus       287 ~~~~~~~~~~~v~~~~~S~pdG~--~la~~~-~~~i~~~~~~~~~----~~~~~~~~~~---------------------  338 (1045)
T 1k32_A          287 SPEDRIISIPSKFAEDFSPLDGD--LIAFVS-RGQAFIQDVSGTY----VLKVPEPLRI---------------------  338 (1045)
T ss_dssp             BCCSEEEECGGGGEEEEEECGGG--CEEEEE-TTEEEEECTTSSB----EEECSCCSCE---------------------
T ss_pred             ccccccccccccceeeecCCCCC--EEEEEE-cCEEEEEcCCCCc----eEEccCCCcc---------------------
Confidence            001112355678999999 9998  788877 7899999975421    1111111110                     


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEE-EEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAY-CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      .+..++|+ +++.++.++.+..+. +||+.+++.... ..|...+..++|+|+|++|++++.++.|++||+.+++....+
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~  416 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE  416 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence            25788999 999999888888898 999987765543 478888999999999999999999999999999999887776


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCc----------ceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRAT----------NYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~wd  279 (279)
                              ..|...+..++|+|||++|++++.+          +.|++||
T Consensus       417 --------~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          417 --------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             --------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             --------cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence                    4677788999999999999988764          4899986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=9.1e-21  Score=158.45  Aligned_cols=194  Identities=10%  Similarity=0.064  Sum_probs=138.9

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGN  102 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  102 (279)
                      +..+|++++|+|    ||++||.++. ||+++||++.+                   ++.......+...+..+.|+|+ 
T Consensus        20 ~~~~~~~~~~~~----DG~~la~~s~~~g~~~lw~~~~-------------------g~~~~lt~~~~~~~~~~~~spd-   75 (582)
T 3o4h_A           20 IAVEKYSLQGVV----DGDKLLVVGFSEGSVNAYLYDG-------------------GETVKLNREPINSVLDPHYGVG-   75 (582)
T ss_dssp             HHSCEEEEEEEE----TTTEEEEEEEETTEEEEEEEET-------------------TEEEECCSSCCSEECEECTTCS-
T ss_pred             hccchheeecCC----CCCeEEEEEccCCceeEEEEcC-------------------CCcEeeecccccccccccCCCC-
Confidence            356899999999    9999999887 99999999865                   3333333333367999999998 


Q ss_pred             CceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe-EEEec
Q 023643          103 EDALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA-IFSAA  178 (279)
Q Consensus       103 ~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~  178 (279)
                      +  ++++++.   +...++|.++........ .+....                       .+...+|+|+++. +++..
T Consensus        76 ~--~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-----------------------~~~~~~~s~dg~~~~~~s~  129 (582)
T 3o4h_A           76 R--VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-----------------------PMRILSGVDTGEAVVFTGA  129 (582)
T ss_dssp             E--EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-----------------------SBEEEEEEECSSCEEEEEE
T ss_pred             e--EEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-----------------------CceeeeeCCCCCeEEEEec
Confidence            5  7887765   556677766431111111 111100                       1345577887763 33344


Q ss_pred             CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC----CeEEEEeCCCCceEEEecCCccccccCcceee
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED----GTARIWDCKSGKCIKVIDPVKDKQLKGVISCV  254 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  254 (279)
                      .++.+.+||+.+++.......+.   .+++|+|||++|++++.+    +.|++||+.+++.. .+        ..|...+
T Consensus       130 ~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l--------~~~~~~~  197 (582)
T 3o4h_A          130 TEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF--------DSGEGSF  197 (582)
T ss_dssp             CSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EE--------CCSSCEE
T ss_pred             CCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee--------ecCCCcc
Confidence            44555699999887766554333   789999999999988877    78999999988765 44        4667788


Q ss_pred             eEEEEcCCCCEEEEEcCcc--eEEeCC
Q 023643          255 SCITLDASESWLVRVRATN--YVILFS  279 (279)
Q Consensus       255 ~~~~~~~~~~~l~~~~~d~--~i~~wd  279 (279)
                      ..++|+|||++|+++..++  .|++||
T Consensus       198 ~~~~~SpDG~~l~~~~~~~~~~i~~~d  224 (582)
T 3o4h_A          198 SSASISPGMKVTAGLETAREARLVTVD  224 (582)
T ss_dssp             EEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred             ccceECCCCCEEEEccCCCeeEEEEEc
Confidence            9999999999999888888  888886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=2.1e-21  Score=166.21  Aligned_cols=234  Identities=9%  Similarity=0.016  Sum_probs=149.1

Q ss_pred             CCceeeeccccccccceeeeeeccc---ceEEEEECCCCCCCCCEEEEecC---------CCcEEEEeCCCCCccccccc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTR---TVFRTVWGPSKDGSPDTIVIASS---------DGSITSYSIPSCISKLPLGL   69 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~   69 (279)
                      ||+|++||+++...  ...+..|..   .+.+++|||    ||++|++++.         ++.|++||+.++        
T Consensus        35 d~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~Sp----Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--------  100 (719)
T 1z68_A           35 DNNIVLYNIETGQS--YTILSNRTMKSVNASNYGLSP----DRQFVYLESDYSKLWRYSYTATYYIYDLSNG--------  100 (719)
T ss_dssp             TSCEEEEESSSCCE--EEEECHHHHHTTTCSEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTT--------
T ss_pred             CCCEEEEEcCCCcE--EEEEccccccccceeeEEECC----CCCeEEEEecCceeEEeecceEEEEEECCCC--------
Confidence            78999999988753  333443433   389999999    9999999876         789999999874        


Q ss_pred             CCcccceeeecccc--ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC
Q 023643           70 SNSKVQQLLGIEPD--GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH  147 (279)
Q Consensus        70 ~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (279)
                                 +.+  ..+   ...+..++|+|+++  .|+.+. ++.|++|++......   ......+...+..    
T Consensus       101 -----------~~~~~~~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~---~l~~~~~~~~v~~----  156 (719)
T 1z68_A          101 -----------EFVRGNEL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPF---QITFNGRENKIFN----  156 (719)
T ss_dssp             -----------EECCSSCC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCE---ECCCCCBTTTEEE----
T ss_pred             -----------ccccceec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcE---EEecCCCcCCeEc----
Confidence                       221  111   24588899999998  888875 789999998654221   1111111111110    


Q ss_pred             CCCCccc-cCCCCCCceeEEEcCCCCeEEEecCCC----------------------------------eEEEEecCCCc
Q 023643          148 QHKGPWG-ALSPVPENNAIAVDPQGGAIFSAAGDS----------------------------------CAYCWDVESSR  192 (279)
Q Consensus       148 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~  192 (279)
                      ++. .|- .........+++|+|||+.|++++.|.                                  .|++||+.+++
T Consensus       157 g~~-~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~  235 (719)
T 1z68_A          157 GIP-DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA  235 (719)
T ss_dssp             SSC-CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred             ccc-cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence            000 000 000000125899999999999887542                                  78999999876


Q ss_pred             EE---E-----EeecCCcceEEEEEcCCCcEEEEecCC----CeEEEEe----CCCCceEEEecCCccccccCcceeee-
Q 023643          193 IK---M-----VFKGHSDYLHCIVARNSTNQIVTGSED----GTARIWD----CKSGKCIKVIDPVKDKQLKGVISCVS-  255 (279)
Q Consensus       193 ~~---~-----~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-  255 (279)
                      .+   .     .+.+|...+..++|+||++++++....    ..|.+||    +.+++....+...    ...|...+. 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~----~~~~~~~~~~  311 (719)
T 1z68_A          236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI----EESRTGWAGG  311 (719)
T ss_dssp             HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE----EECSSSCSSS
T ss_pred             ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc----cccCCceEcc
Confidence            53   1     234578889999999998877764322    3488899    7777654433100    013445555 


Q ss_pred             ----EEEEcCCCCEEEE--EcCcce--EEeC
Q 023643          256 ----CITLDASESWLVR--VRATNY--VILF  278 (279)
Q Consensus       256 ----~~~~~~~~~~l~~--~~~d~~--i~~w  278 (279)
                          .++|+|||+.|+.  +..+|.  |.+|
T Consensus       312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~  342 (719)
T 1z68_A          312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYI  342 (719)
T ss_dssp             SSCCCCEECTTSSCEEEEEECTTSCEEEEEE
T ss_pred             ccCCccEECCCCCeEEEEEEccCCceEEEEE
Confidence                7899999996554  445554  4444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=3.7e-19  Score=138.43  Aligned_cols=157  Identities=9%  Similarity=0.056  Sum_probs=113.4

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC-Ccc-CeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG-HDG-PAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ++|++++.++.|.+||+.+                   ++.+..+.. +.. .+..++|+|+++ .++++++.++.|.+|
T Consensus         2 ~~~v~~~~~~~v~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~   61 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK-------------------MAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKI   61 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-------------------TEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCC-------------------CcEEEEEEcCCCCCCccceEEcCCCC-EEEEEeCCCCeEEEE
Confidence            4789999999999999987                   344444432 221 477899999997 245666778999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec------------CCCeEEEEe
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA------------GDSCAYCWD  187 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------~d~~i~i~d  187 (279)
                      |+.+..   ....+........                 ...+..++|+|++++++++.            .++.|.+||
T Consensus        62 d~~~~~---~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d  121 (337)
T 1pby_B           62 DLVTGE---TLGRIDLSTPEER-----------------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             ETTTCC---EEEEEECCBTTEE-----------------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             ECCCCC---eEeeEEcCCcccc-----------------cccccceEECCCCCEEEEEecccccccccccccCceEEEEE
Confidence            986532   1111111000000                 00256899999999888885            579999999


Q ss_pred             cCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          188 VESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +.+++.+..+.. ...+.+++|+|++++|+++  ++.|.+||+.+++....+..
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~  172 (337)
T 1pby_B          122 AETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS
T ss_pred             CCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec
Confidence            999988887764 4567889999999988887  68899999999888766653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=2.6e-20  Score=159.39  Aligned_cols=195  Identities=10%  Similarity=0.044  Sum_probs=136.0

Q ss_pred             EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc---CeEEEEecCCCCceE
Q 023643           30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG---PAYDVKFYGGNEDAL  106 (279)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~  106 (279)
                      .++|+|    ++.++++ +.|++|++||+.++                   +....+..|..   .+.+++|+|+++  +
T Consensus        20 ~~~~s~----dg~~~~~-~~d~~i~~~~~~~g-------------------~~~~~~~~~~~~~~~~~~~~~SpDg~--~   73 (719)
T 1z68_A           20 FPNWIS----GQEYLHQ-SADNNIVLYNIETG-------------------QSYTILSNRTMKSVNASNYGLSPDRQ--F   73 (719)
T ss_dssp             CCEESS----SSEEEEE-CTTSCEEEEESSSC-------------------CEEEEECHHHHHTTTCSEEEECTTSS--E
T ss_pred             ccEECC----CCeEEEE-cCCCCEEEEEcCCC-------------------cEEEEEccccccccceeeEEECCCCC--e
Confidence            679999    8865554 56999999999983                   33333433333   488999999998  8


Q ss_pred             EEEeeC---------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe
Q 023643          107 LLSCGD---------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA  177 (279)
Q Consensus       107 l~s~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  177 (279)
                      |++++.         ++.|++||+.+..... ...+.                         ..+..++|+|||+.|+.+
T Consensus        74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-~~~l~-------------------------~~~~~~~~SPDG~~la~~  127 (719)
T 1z68_A           74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVR-GNELP-------------------------RPIQYLCWSPVGSKLAYV  127 (719)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC-------------------------SSBCCEEECSSTTCEEEE
T ss_pred             EEEEecCceeEEeecceEEEEEECCCCcccc-ceecC-------------------------cccccceECCCCCEEEEE
Confidence            888876         7899999987542200 00010                         026789999999999988


Q ss_pred             cCCCeEEEEecCCCcEEEEe-ecCCcce-----------------EEEEEcCCCcEEEEecCCC----------------
Q 023643          178 AGDSCAYCWDVESSRIKMVF-KGHSDYL-----------------HCIVARNSTNQIVTGSEDG----------------  223 (279)
Q Consensus       178 ~~d~~i~i~d~~~~~~~~~~-~~~~~~i-----------------~~i~~~~~~~~l~~~~~d~----------------  223 (279)
                      . ++.|++||+.+++..+.. .++...+                 .+++|+|||++|++++.|.                
T Consensus       128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~  206 (719)
T 1z68_A          128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY  206 (719)
T ss_dssp             E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred             E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence            6 789999999988765533 2232222                 4899999999999987652                


Q ss_pred             ------------------eEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEcC--c--ceEEeCC
Q 023643          224 ------------------TARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA--T--NYVILFS  279 (279)
Q Consensus       224 ------------------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--~~i~~wd  279 (279)
                                        .|++||+.+++..  ..+..  ...+.+|...+..++|+||++++++...  +  ..|.+||
T Consensus       207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          207 PRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV--PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC--CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             ccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC--CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                              7889999887653  12211  1112467888999999999887777432  2  2366554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=6.3e-18  Score=131.30  Aligned_cols=231  Identities=14%  Similarity=0.069  Sum_probs=159.4

Q ss_pred             CCceeeeccccccccceeeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|.|.+||.++.+.  +.... .+......++++|    +++++++...++.|++|+......                 
T Consensus        68 ~~~i~~~d~~~g~~--~~~~~~~~~~~p~gia~d~----~g~l~v~d~~~~~v~~~~~~g~~~-----------------  124 (329)
T 3fvz_A           68 EDTILVIDPNNAEI--LQSSGKNLFYLPHGLSIDT----DGNYWVTDVALHQVFKLDPHSKEG-----------------  124 (329)
T ss_dssp             SCCEEEECTTTCCE--EEEECTTTCSSEEEEEECT----TSCEEEEETTTTEEEEECTTCSSC-----------------
T ss_pred             CCcEEEEECCCCeE--EeccCCCccCCceEEEECC----CCCEEEEECCCCEEEEEeCCCCeE-----------------
Confidence            36789999876542  33322 3445788999999    899999999999999999875310                 


Q ss_pred             cccccc---------cCCccCeEEEEecC-CCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           81 EPDGFL---------HGHDGPAYDVKFYG-GNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        81 ~~~~~~---------~~h~~~v~~~~~~~-~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                       .+..+         .++......++++| ++.  ++++.+ .++.|++|+.+ .   .....+......          
T Consensus       125 -~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~~~~~~I~~~~~~-g---~~~~~~~~~g~~----------  187 (329)
T 3fvz_A          125 -PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDGYCNSRIVQFSPS-G---KFVTQWGEESSG----------  187 (329)
T ss_dssp             -CSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEECSSCCEEEEECTT-S---CEEEEECEECCS----------
T ss_pred             -EEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeCCCCCeEEEEcCC-C---CEEEEeccCCCC----------
Confidence             11111         23445688999999 676  777776 69999999943 1   111111100000          


Q ss_pred             CCccccCCCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcC------CCcEEEEec
Q 023643          150 KGPWGALSPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARN------STNQIVTGS  220 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~------~~~~l~~~~  220 (279)
                        .-...........++++|+ +.++++...++.|++||..+++.+..+.  .+...+..++++|      +++.+++..
T Consensus       188 --~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~  265 (329)
T 3fvz_A          188 --SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQ  265 (329)
T ss_dssp             --SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCS
T ss_pred             --CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccC
Confidence              0000000112579999998 6677777788999999999899888874  3556788999999      333333334


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+..|++||+.+++.+..+...     .++.....+++++|+|.++++...++.|++|+
T Consensus       266 ~~~~v~~~~~~~g~~~~~~~~~-----~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          266 EPVQGFVMNFSSGEIIDVFKPV-----RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CCCCEEEEETTTCCEEEEECCS-----SSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CCcEEEEEEcCCCeEEEEEcCC-----CCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            4568999999999999887422     24556789999999998888989999999885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=4.1e-19  Score=140.00  Aligned_cols=228  Identities=9%  Similarity=0.050  Sum_probs=141.3

Q ss_pred             ceeeeccc-cccccceeeeeecccceEEEEECCCCCCCCCE--EEEec-------------CCCcEEEEeCCCCCccccc
Q 023643            4 DSTNWDED-AYRKSILKEREILTRTVFRTVWGPSKDGSPDT--IVIAS-------------SDGSITSYSIPSCISKLPL   67 (279)
Q Consensus         4 ~v~iw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--l~~~~-------------~dg~i~iw~~~~~~~~~~~   67 (279)
                      .|++|+++ ..+...+.....+ +....++|+|    ++++  ++++.             .+|++.+|++......   
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~---  132 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL---  132 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE---
T ss_pred             eEEEEEECCCCCEEEeeEeecC-CCCccEEECC----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC---
Confidence            58899976 4332111111111 2355688999    8884  55554             6899999999742100   


Q ss_pred             ccCCcccceeeecccccccc-CCccCeEEEEecCCCCceEEEEee-CCCcEEEeecC-CCccCcceeeeccCcccceEEe
Q 023643           68 GLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWK-EFTESKVPINLQGNHVKPVLDL  144 (279)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~  144 (279)
                                  ...+..+. .+...+.+++|+|+++  +|+++. .++.|++|+++ +... .......          
T Consensus       133 ------------~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~----------  187 (365)
T 1jof_A          133 ------------EKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRKLASGEV-ELVGSVD----------  187 (365)
T ss_dssp             ------------EEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCE-EEEEEEE----------
T ss_pred             ------------cceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEECCCCCE-EEeeeEe----------
Confidence                        00111111 2456789999999998  777665 46899999986 2211 0001110          


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecC--CCcEEE---Eee-------cCCc------ceE
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVE--SSRIKM---VFK-------GHSD------YLH  205 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~-------~~~~------~i~  205 (279)
                       ...         +...+..++|+|+++++++++. ++.|.+|+++  +++...   .+.       +|..      .+.
T Consensus       188 -~~~---------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  257 (365)
T 1jof_A          188 -APD---------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA  257 (365)
T ss_dssp             -CSS---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred             -cCC---------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence             000         0012578999999998887764 6899999765  455431   222       1222      588


Q ss_pred             EEE-EcCCCcEEEEecCCC------eEEEEeCC-CCceEEEecCCccccccCcceeeeEEEEcC---CCCEEEEEcCc-c
Q 023643          206 CIV-ARNSTNQIVTGSEDG------TARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSCITLDA---SESWLVRVRAT-N  273 (279)
Q Consensus       206 ~i~-~~~~~~~l~~~~~d~------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d-~  273 (279)
                      .++ |+|+|++|++++.+.      .|.+|++. +++.......     ...+......++|+|   +|++|++++.+ +
T Consensus       258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-----SPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-----EECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-----eecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence            999 999999887765432      89999996 5665432100     022333456789999   89999999864 8


Q ss_pred             eEEeCC
Q 023643          274 YVILFS  279 (279)
Q Consensus       274 ~i~~wd  279 (279)
                      .|.+|+
T Consensus       333 ~v~v~~  338 (365)
T 1jof_A          333 WLEIYR  338 (365)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=2.4e-18  Score=135.59  Aligned_cols=229  Identities=13%  Similarity=0.057  Sum_probs=142.1

Q ss_pred             Cceeeeccc--cccccceeeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC-CCCcccccccCCcccceee
Q 023643            3 GDSTNWDED--AYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP-SCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         3 G~v~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~   78 (279)
                      +.|.+|+++  +.....+.... .....+..++|+|    ++++|++++.+ .|.+|++. ++                 
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp----dg~~l~~~~~~-~v~~~~~~~~g-----------------   71 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH----ERKNIYGAAMK-KWSSFAVKSPT-----------------   71 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT----TSSEEEEEEBT-EEEEEEEEETT-----------------
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC----CCCEEEEEccc-eEEEEEECCCC-----------------
Confidence            356666643  33322222221 2334688999999    89999888887 99999987 42                 


Q ss_pred             eccccccc--cCCccCeEEEEecCCCCceE--EEEee-------------CCCcEEEeecCCCccCcceeeeccCcccce
Q 023643           79 GIEPDGFL--HGHDGPAYDVKFYGGNEDAL--LLSCG-------------DDGRICGWRWKEFTESKVPINLQGNHVKPV  141 (279)
Q Consensus        79 ~~~~~~~~--~~h~~~v~~~~~~~~~~~~~--l~s~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  141 (279)
                        +.....  ..+ +.+..++|+|+++  +  +++++             .+|.+.+|+++...  .......       
T Consensus        72 --~~~~~~~~~~~-g~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g--~~~~~~~-------  137 (365)
T 1jof_A           72 --EIVHEASHPIG-GHPRANDADTNTR--AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG--KLEKNVQ-------  137 (365)
T ss_dssp             --EEEEEEEEECC-SSGGGGCTTSCCE--EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC--CEEEEEE-------
T ss_pred             --CEEEeeEeecC-CCCccEEECCCCC--EEEEEEecCCcceeccceeecCCceEEEEccCCCC--cCcceEe-------
Confidence              111111  111 1244588999986  4  44553             68999999986321  1110000       


Q ss_pred             EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecC-CCcEE--EEee--cCCcceEEEEEcCCCcE
Q 023643          142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVE-SSRIK--MVFK--GHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~--~~~~--~~~~~i~~i~~~~~~~~  215 (279)
                       .+. ..         ....+.+++|+|++++++++. .++.|++||+. +++..  ..+.  .|...+..++|+|+|++
T Consensus       138 -~~~-~~---------~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~  206 (365)
T 1jof_A          138 -NYE-YQ---------ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY  206 (365)
T ss_dssp             -EEE-CC---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             -eEE-eC---------CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE
Confidence             000 00         011368999999999888765 46899999998 67653  3343  23567899999999998


Q ss_pred             EEEec-CCCeEEEEeCC--CCceEE---EecCCccccccCcce------eeeEEE-EcCCCCEEEEEcCcc------eEE
Q 023643          216 IVTGS-EDGTARIWDCK--SGKCIK---VIDPVKDKQLKGVIS------CVSCIT-LDASESWLVRVRATN------YVI  276 (279)
Q Consensus       216 l~~~~-~d~~i~vwd~~--~~~~~~---~~~~~~~~~~~~~~~------~v~~~~-~~~~~~~l~~~~~d~------~i~  276 (279)
                      +++++ .++.|.+|++.  +++...   .+.... ..+.+|..      .+..++ |+|||++|++++.+.      .|.
T Consensus       207 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~  285 (365)
T 1jof_A          207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA  285 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred             EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC-CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEE
Confidence            87766 47899999765  565432   221110 00112232      578999 999999988775432      788


Q ss_pred             eCC
Q 023643          277 LFS  279 (279)
Q Consensus       277 ~wd  279 (279)
                      +|+
T Consensus       286 v~~  288 (365)
T 1jof_A          286 GFK  288 (365)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            884

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=2.3e-17  Score=125.61  Aligned_cols=216  Identities=11%  Similarity=0.063  Sum_probs=150.4

Q ss_pred             CCceeeeccccccccceeeee------ecccceEEEEE-CCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcc
Q 023643            2 CGDSTNWDEDAYRKSILKERE------ILTRTVFRTVW-GPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSK   73 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~   73 (279)
                      ++.|++||.++..   +..+.      .+...+..+++ .+    ++.++++... ++.|.+|+...             
T Consensus        50 ~~~i~~~d~~g~~---~~~~~~~~~~~~~~~~p~~i~~~~~----~g~l~v~~~~~~~~i~~~d~~g-------------  109 (286)
T 1q7f_A           50 NHRIQIFDKEGRF---KFQFGECGKRDSQLLYPNRVAVVRN----SGDIIVTERSPTHQIQIYNQYG-------------  109 (286)
T ss_dssp             GTEEEEECTTSCE---EEEECCBSSSTTCBSSEEEEEEETT----TTEEEEEECGGGCEEEEECTTS-------------
T ss_pred             CCEEEEECCCCcE---EEEecccCCCcccccCceEEEEEcC----CCeEEEEcCCCCCEEEEECCCC-------------
Confidence            4678899877532   22222      23457889999 46    6777777643 78999999442             


Q ss_pred             cceeeecccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           74 VQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        74 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                             +.+..+. .+...+.++++.|++.  ++++...++.|.+|+.+.    .....+...           .    
T Consensus       110 -------~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g----~~~~~~~~~-----------~----  161 (286)
T 1q7f_A          110 -------QFVRKFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNG----NVLHKFGCS-----------K----  161 (286)
T ss_dssp             -------CEEEEECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTS----CEEEEEECT-----------T----
T ss_pred             -------cEEEEecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCC----CEEEEeCCC-----------C----
Confidence                   2222222 2345688999999987  888888889999999532    111111100           0    


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCC-eEEEEe
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDG-TARIWD  229 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd  229 (279)
                           ....+..++++|+++++++...++.|++||.. ++.+..+..+  ...+..++++++|+++++...++ .|.+||
T Consensus       162 -----~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          162 -----HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             -----TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             -----ccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence                 00125899999999877777778999999974 6666666543  36789999999999999888886 999999


Q ss_pred             CCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          230 CKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      . +++.+..+...      .....+.+++++|+|+++++ +.|+.|++|+
T Consensus       236 ~-~g~~~~~~~~~------~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          236 Q-DGQLISALESK------VKHAQCFDVALMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             T-TSCEEEEEEES------SCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred             C-CCCEEEEEccc------CCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence            5 57777666321      12234678999999987777 5689999985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=1.9e-18  Score=135.12  Aligned_cols=164  Identities=10%  Similarity=0.060  Sum_probs=112.7

Q ss_pred             EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc-cCeEEEEecCCCCceEEEE
Q 023643           31 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD-GPAYDVKFYGGNEDALLLS  109 (279)
Q Consensus        31 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s  109 (279)
                      +++++    ++.++++++.+++|++||+.+                   ++.+..+..+. ..+..++|+|+++ ..+++
T Consensus         5 ~~~~~----~~~~~v~~~~~~~v~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~   60 (349)
T 1jmx_B            5 PALKA----GHEYMIVTNYPNNLHVVDVAS-------------------DTVYKSCVMPDKFGPGTAMMAPDNR-TAYVL   60 (349)
T ss_dssp             CCCCT----TCEEEEEEETTTEEEEEETTT-------------------TEEEEEEECSSCCSSCEEEECTTSS-EEEEE
T ss_pred             ccccC----CCEEEEEeCCCCeEEEEECCC-------------------CcEEEEEecCCCCCCceeEECCCCC-EEEEE
Confidence            45666    788999999999999999987                   34444444332 2467899999997 24456


Q ss_pred             eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC---------
Q 023643          110 CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD---------  180 (279)
Q Consensus       110 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------  180 (279)
                      ...++.|.+||+.+..   ..............                ...+..++|+|+++++++++.+         
T Consensus        61 ~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~----------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  121 (349)
T 1jmx_B           61 NNHYGDIYGIDLDTCK---NTFHANLSSVPGEV----------------GRSMYSFAISPDGKEVYATVNPTQRLNDHYV  121 (349)
T ss_dssp             ETTTTEEEEEETTTTE---EEEEEESCCSTTEE----------------EECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             eCCCCcEEEEeCCCCc---EEEEEEcccccccc----------------cccccceEECCCCCEEEEEcccccccccccc
Confidence            6678999999986532   11111111000000                0025789999999999988865         


Q ss_pred             ---CeEEEEecCCCcE---EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          181 ---SCAYCWDVESSRI---KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       181 ---~~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                         +.|.+||+.+++.   +..+. +...+.+++|+|+++ +++++.  .|.+||+.+++.+..+..
T Consensus       122 ~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECS
T ss_pred             cCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccc
Confidence               8999999988543   33444 334688999999999 555543  499999999988877653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=8.1e-19  Score=150.52  Aligned_cols=236  Identities=10%  Similarity=0.023  Sum_probs=146.8

Q ss_pred             CCceeeeccccccccceeeeeeccc-----ceEEEEECCCCCCCCCEEEEecCC---------CcEEEEeCCCCCccccc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTR-----TVFRTVWGPSKDGSPDTIVIASSD---------GSITSYSIPSCISKLPL   67 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~   67 (279)
                      ||.|++||++++..  ...+..|..     ....++|||    |+++|+.++.+         +.+.+||+.++      
T Consensus        35 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~------  102 (740)
T 4a5s_A           35 ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSYTASYDIYDLNKR------  102 (740)
T ss_dssp             TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTT------
T ss_pred             CCcEEEEECCCCce--EEEEechhhhhhcccccceEECC----CCCEEEEEECCeeeEEEccceEEEEEECCCC------
Confidence            68999999988753  333444432     234478999    99999998876         56679999983      


Q ss_pred             ccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecC
Q 023643           68 GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNH  147 (279)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (279)
                                   +. ..+..|.+.+...+|+|+++  .|+.++ |+.|++|++......  .....+.. ..+..    
T Consensus       103 -------------~~-~~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~--~lt~~g~~-~~~~~----  158 (740)
T 4a5s_A          103 -------------QL-ITEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSY--RITWTGKE-DIIYN----  158 (740)
T ss_dssp             -------------EE-CCSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCE--ECCSCCBT-TTEEE----
T ss_pred             -------------cE-EEcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceE--EEcCCCCc-cceec----
Confidence                         32 23556777899999999998  888774 689999998653211  11111111 10100    


Q ss_pred             CCCCccc-cCCCCCCceeEEEcCCCCeEEEecCC------------------------------------CeEEEEecCC
Q 023643          148 QHKGPWG-ALSPVPENNAIAVDPQGGAIFSAAGD------------------------------------SCAYCWDVES  190 (279)
Q Consensus       148 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------~~i~i~d~~~  190 (279)
                      ... .|- ...-......+.|+|||+.|+.++.|                                    ..|++||+.+
T Consensus       159 g~~-~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          159 GIT-DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             SBC-CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             Ccc-cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence            000 000 00000113568999999988876421                                    1588999988


Q ss_pred             ---Cc--EEEEee------cCCcceEEEEEcCCCcEEEEec----CCCeEEEEeCCCCc----eEEEecCCccccccCcc
Q 023643          191 ---SR--IKMVFK------GHSDYLHCIVARNSTNQIVTGS----EDGTARIWDCKSGK----CIKVIDPVKDKQLKGVI  251 (279)
Q Consensus       191 ---~~--~~~~~~------~~~~~i~~i~~~~~~~~l~~~~----~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~  251 (279)
                         ++  ....+.      +|...+..++|+|+|+.++...    .+..|.+||+.+++    +........    ..|.
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~  313 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTT  313 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSS
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCC
Confidence               73  222333      3778899999999999766543    34479999999887    221110000    2344


Q ss_pred             eeee-----EEEEcCCCCEEE-EEc-Ccc--eEEeC
Q 023643          252 SCVS-----CITLDASESWLV-RVR-ATN--YVILF  278 (279)
Q Consensus       252 ~~v~-----~~~~~~~~~~l~-~~~-~d~--~i~~w  278 (279)
                      ..|.     .++|+|||+.|+ ..+ .+|  .|.+|
T Consensus       314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (740)
T ss_dssp             SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence            4443     688999999877 554 344  44444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=1.9e-17  Score=130.09  Aligned_cols=223  Identities=8%  Similarity=0.012  Sum_probs=144.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      |+.|.+||.++.+  .+..+..+..+  .++|+|    ++++++++.          .++.|.+||..+.+         
T Consensus        30 d~~v~v~D~~t~~--~~~~i~~g~~p--~i~~sp----dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~---------   92 (361)
T 2oiz_A           30 ESRVHVYDYTNGK--FLGMVPTAFNG--HVQVSN----DGKKIYTMTTYHERITRGKRSDVVEVWDADKLT---------   92 (361)
T ss_dssp             GCEEEEEETTTCC--EEEEEECCEEE--EEEECT----TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC---------
T ss_pred             cCeEEEEECCCCe--EEEEecCCCCC--ceEECC----CCCEEEEEEecccccccCCCCCEEEEEECcCCc---------
Confidence            6789999987764  34555555555  899999    999998876          36789999998732         


Q ss_pred             cccceeeeccccccccC------CccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcc-eee--------ec
Q 023643           72 SKVQQLLGIEPDGFLHG------HDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKV-PIN--------LQ  134 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~-~~~--------~~  134 (279)
                                .+..+..      +......++++|+++  +|+++..  +++|.+||+.+.+.... +..        ..
T Consensus        93 ----------~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p  160 (361)
T 2oiz_A           93 ----------FEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP  160 (361)
T ss_dssp             ----------EEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred             ----------EEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence                      2222221      223456788999988  7776653  57899999865422111 000        00


Q ss_pred             -c---------CcccceEEeecCCC--------------CCc-----------------------cccCCC---------
Q 023643          135 -G---------NHVKPVLDLVNHQH--------------KGP-----------------------WGALSP---------  158 (279)
Q Consensus       135 -~---------~~~~~~~~~~~~~~--------------~~~-----------------------~~~~~~---------  158 (279)
                       +         ........+.....              ..+                       ++....         
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence             0         00000000000000              000                       000000         


Q ss_pred             ------------CCCceeEEEcCCCCeEEEecC-----------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643          159 ------------VPENNAIAVDPQGGAIFSAAG-----------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       159 ------------~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  215 (279)
                                  ......++|+|+++.++++..           .+.|.+||+.+++.+..+..+.  +.+++|+|+|++
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~  318 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL  318 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence                        001112789999888877643           3589999999999999998776  899999999999


Q ss_pred             EEEecCCCeEEEEeCCCC--ceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643          216 IVTGSEDGTARIWDCKSG--KCIKVIDPVKDKQLKGVISCVSCITLDASES  264 (279)
Q Consensus       216 l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  264 (279)
                      |++++. +.|.+||..++  +.+..+        ..+......++++|+|.
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i--------~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTI--------EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEE--------TTSCSSEEEEEECCCSC
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEe--------ccCCCCcEEEEecCCCC
Confidence            998887 99999999999  988887        33444567889999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=9.6e-18  Score=142.27  Aligned_cols=226  Identities=11%  Similarity=-0.012  Sum_probs=144.7

Q ss_pred             CCceeeeccccccccceeeeeecccceE---------EEEEC--CCCCCCCCE-EEEecC-CCcEEEEeCC--C-CCccc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVF---------RTVWG--PSKDGSPDT-IVIASS-DGSITSYSIP--S-CISKL   65 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~~~~~-l~~~~~-dg~i~iw~~~--~-~~~~~   65 (279)
                      +|..+||.....  ...+.+..|...+.         ...|+  |    |++. |+.++. +..|.++++.  . +.   
T Consensus        46 ~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP----Dg~~~la~~~~~~~~l~~~~~~~~g~~~---  116 (662)
T 3azo_A           46 AGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRP----AGGPLLVFTHFGDQRLYAFEPDAPGGAV---  116 (662)
T ss_dssp             TTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCS----SSSCEEEEEBTTTCCEEEECTTSTTCCC---
T ss_pred             CCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeec----CCCeEEEEEECCCCeEEEEcCCCCCCCC---
Confidence            566788874222  12334445555555         55565  8    8887 766543 5667777765  1 21   


Q ss_pred             ccccCCcccceeeeccccccccC-----CccCeEEEEecCCCCceEEEEeeCC----------CcEEEeecCCCccC--c
Q 023643           66 PLGLSNSKVQQLLGIEPDGFLHG-----HDGPAYDVKFYGGNEDALLLSCGDD----------GRICGWRWKEFTES--K  128 (279)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iw~~~~~~~~--~  128 (279)
                                       ...+..     |...+..++|+|+++  .|++++.|          ..|++||+......  .
T Consensus       117 -----------------~~~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A          117 -----------------PRPLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             -----------------CEECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             -----------------CEeccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence                             122222     667789999999998  88888876          57999998641000  0


Q ss_pred             ceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--------CeEEEEecC-CC---cEEE
Q 023643          129 VPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--------SCAYCWDVE-SS---RIKM  195 (279)
Q Consensus       129 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~  195 (279)
                      ....+. .+.                      ..+..++|+|||++|+.++.+        ..|++||+. ++   +...
T Consensus       178 ~~~~l~~~~~----------------------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~  235 (662)
T 3azo_A          178 AVRELSDDAH----------------------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT  235 (662)
T ss_dssp             GSEESSCSCS----------------------SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred             ceeEEEecCC----------------------CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence            111111 111                      025678999999999877644        479999998 56   4444


Q ss_pred             EeecCCcceEEEEEcCCCcEEEEecCCC--eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          196 VFKGHSDYLHCIVARNSTNQIVTGSEDG--TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       196 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      ....+...+..++|+|+|+++++++.++  .|.+||+.+++.......+.......-...+..++|+|+++++++++. +
T Consensus       236 l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          236 LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            4555678899999999999888888888  677777767765544321110000000001467899999999999988 8


Q ss_pred             eEEeC
Q 023643          274 YVILF  278 (279)
Q Consensus       274 ~i~~w  278 (279)
                      .+++|
T Consensus       315 ~~~l~  319 (662)
T 3azo_A          315 AAVLG  319 (662)
T ss_dssp             SCEEE
T ss_pred             ccEEE
Confidence            88887

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=3.6e-18  Score=146.50  Aligned_cols=197  Identities=8%  Similarity=-0.005  Sum_probs=133.3

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc-----CeEEEEecCC
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG-----PAYDVKFYGG  101 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~  101 (279)
                      ....+.|+|    ++.+++++  ||+|++||+.++.                   ....+.+|..     ....+.|+|+
T Consensus        18 ~~~~~~w~~----dg~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spd   72 (740)
T 4a5s_A           18 KLYSLRWIS----DHEYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPD   72 (740)
T ss_dssp             CCCCEEECS----SSEEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTT
T ss_pred             cccccEECC----CCcEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCC
Confidence            466899999    89888886  8999999999843                   2333344432     2345889999


Q ss_pred             CCceEEEEeeCC---------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643          102 NEDALLLSCGDD---------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus       102 ~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      ++  +|+.++.+         +.+.+||+.+....    .+..+.                      ..+...+|||||+
T Consensus        73 g~--~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~----------------------~~~~~~~~SPdG~  124 (740)
T 4a5s_A           73 GQ--FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIP----------------------NNTQWVTWSPVGH  124 (740)
T ss_dssp             SS--EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCC----------------------TTEEEEEECSSTT
T ss_pred             CC--EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCC----------------------CcceeeEECCCCC
Confidence            98  88888876         56679998754211    111111                      1267899999999


Q ss_pred             eEEEecCCCeEEEEecCCCcEEEE-eecCCcce-----------------EEEEEcCCCcEEEEecCCC-----------
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYL-----------------HCIVARNSTNQIVTGSEDG-----------  223 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i-----------------~~i~~~~~~~~l~~~~~d~-----------  223 (279)
                      .|+.+. ++.|++||+.+++..+. ..++...+                 ..++|||||++|+.++.|.           
T Consensus       125 ~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~  203 (740)
T 4a5s_A          125 KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY  203 (740)
T ss_dssp             CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred             EEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEee
Confidence            998885 68999999988876542 22332222                 3489999999999875322           


Q ss_pred             -------------------------eEEEEeCCC---Cc--eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc---
Q 023643          224 -------------------------TARIWDCKS---GK--CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR---  270 (279)
Q Consensus       224 -------------------------~i~vwd~~~---~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---  270 (279)
                                               .|++||+.+   ++  ....+...  ..+.+|...+..++|+|||+.++...   
T Consensus       204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~wspdg~~~~~~~~r~  281 (740)
T 4a5s_A          204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP--ASMLIGDHYLCDVTWATQERISLQWLRRI  281 (740)
T ss_dssp             CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC--HHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred             cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC--ccCCCCCeEEEEEEEeCCCeEEEEEeCCC
Confidence                                     478889887   63  22233211  00124778899999999999766542   


Q ss_pred             -CcceEEeCC
Q 023643          271 -ATNYVILFS  279 (279)
Q Consensus       271 -~d~~i~~wd  279 (279)
                       .+..|.+||
T Consensus       282 ~~~~~i~~~d  291 (740)
T 4a5s_A          282 QNYSVMDICD  291 (740)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence             334677765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=4.1e-16  Score=119.27  Aligned_cols=211  Identities=10%  Similarity=0.056  Sum_probs=142.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|..|+.++.    ...+..+...+.+++++|    +++++++...++.|.+||..++.....               
T Consensus        49 ~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~----dg~l~v~~~~~~~i~~~d~~~g~~~~~---------------  105 (296)
T 3e5z_A           49 QNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNK----QGHLIACSHGLRRLERQREPGGEWESI---------------  105 (296)
T ss_dssp             GTEEEEEETTSC----EEEEESSCSSEEEEEECT----TCCEEEEETTTTEEEEECSTTCCEEEE---------------
T ss_pred             CCEEEEEECCCC----eEEEECCCCCcceeeECC----CCcEEEEecCCCeEEEEcCCCCcEEEE---------------
Confidence            466788887764    334455667899999999    899888887788999999976421100               


Q ss_pred             ccccccC-CccCeEEEEecCCCCceEEEEeeC-----------------CCcEEEeecCCCccCcceeeeccCcccceEE
Q 023643           82 PDGFLHG-HDGPAYDVKFYGGNEDALLLSCGD-----------------DGRICGWRWKEFTESKVPINLQGNHVKPVLD  143 (279)
Q Consensus        82 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  143 (279)
                       .....+ ....+..+++.|++.  ++++.+.                 .+.|..++..    .. ........      
T Consensus       106 -~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~-~~~~~~~~------  171 (296)
T 3e5z_A          106 -ADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GT-LSAPIRDR------  171 (296)
T ss_dssp             -ECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SC-EEEEECCC------
T ss_pred             -eeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC----CC-EEEeecCC------
Confidence             000111 123467899999997  7776321                 2334444422    11 11111100      


Q ss_pred             eecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-CCcE---EEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          144 LVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-SSRI---KMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                                      .....++|+|+++.+++.+.++.|.+||+. +++.   ...+..+...+.+++++++|+++++.
T Consensus       172 ----------------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          172 ----------------VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             ----------------SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             ----------------CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence                            124789999999988777888999999997 4554   33443355667889999999977766


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE-cCCCCEEEEEcCcceEEe
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL-DASESWLVRVRATNYVIL  277 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~~  277 (279)
                        ++.|.+||.. ++.+..+        ..+.. +++++| .|+++.|++++.++..++
T Consensus       236 --~~~v~~~~~~-g~~~~~~--------~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          236 --GDGVHVLTPD-GDELGRV--------LTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             --TTEEEEECTT-SCEEEEE--------ECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             --CCeEEEECCC-CCEEEEE--------ECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence              8889999986 7777777        34444 889999 689998998888876553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=9.5e-16  Score=115.58  Aligned_cols=216  Identities=9%  Similarity=0.010  Sum_probs=146.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ++.|.+|+..+......  ...+...+.++++++    +++++++.. ++.|.+|+.....                   
T Consensus        45 ~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~----~g~l~v~~~-~~~i~~~d~~~~~-------------------   98 (270)
T 1rwi_B           45 YGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDG----AGTVYVTDF-NNRVVTLAAGSNN-------------------   98 (270)
T ss_dssp             SCEEEEECC-----EEC--CCCSCCSCCCEEECT----TCCEEEEET-TTEEEEECTTCSC-------------------
T ss_pred             CCcEEEecCCCcccceE--eeCCcCCcceeEECC----CCCEEEEcC-CCEEEEEeCCCce-------------------
Confidence            45677777655432111  112335678899999    888777766 8899999987531                   


Q ss_pred             cccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           82 PDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        82 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                       ...+. .....+..+++.|++.  ++++...++.|.+|+....   .........                      ..
T Consensus        99 -~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~---~~~~~~~~~----------------------~~  150 (270)
T 1rwi_B           99 -QTVLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSK---TQTVLPFTG----------------------LN  150 (270)
T ss_dssp             -CEECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCC---SCEECCCCS----------------------CC
T ss_pred             -EeeeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCc---eeEeecccc----------------------CC
Confidence             11111 2235688999999887  7777777889999974321   111100000                      01


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .+..++++++++++++...++.|.+||............+...+.+++++++|..+++...++.|.+||........ +.
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~  229 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP  229 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec
Confidence            25789999999877776677899999988766554333344678999999999888888889999999986544332 21


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             ..+...+.+++++++|+++++...++.|++|+
T Consensus       230 -------~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          230 -------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             -------CCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             -------cCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence                   22335678999999999888999999999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=1.2e-15  Score=116.17  Aligned_cols=204  Identities=11%  Similarity=0.166  Sum_probs=142.6

Q ss_pred             ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec-CC
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY-GG  101 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  101 (279)
                      ++.....+++++|    +++++++...++.|.+|+.... ....+.             ......++...+..+++. ++
T Consensus        27 g~~~~p~~v~~~~----~g~l~v~~~~~~~i~~~d~~g~-~~~~~~-------------~~~~~~~~~~~p~~i~~~~~~   88 (286)
T 1q7f_A           27 GQFTEPSGVAVNA----QNDIIVADTNNHRIQIFDKEGR-FKFQFG-------------ECGKRDSQLLYPNRVAVVRNS   88 (286)
T ss_dssp             TCBSCEEEEEECT----TCCEEEEEGGGTEEEEECTTSC-EEEEEC-------------CBSSSTTCBSSEEEEEEETTT
T ss_pred             CccCCCceEEECC----CCCEEEEECCCCEEEEECCCCc-EEEEec-------------ccCCCcccccCceEEEEEcCC
Confidence            3456789999999    8898888888999999998732 110000             000112345568899994 66


Q ss_pred             CCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC
Q 023643          102 NEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD  180 (279)
Q Consensus       102 ~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  180 (279)
                      +.  ++++... ++.|++|+.. .   .....+....                     ...+..++++|+++++++...+
T Consensus        89 g~--l~v~~~~~~~~i~~~d~~-g---~~~~~~~~~~---------------------~~~~~~i~~~~~g~l~v~~~~~  141 (286)
T 1q7f_A           89 GD--IIVTERSPTHQIQIYNQY-G---QFVRKFGATI---------------------LQHPRGVTVDNKGRIIVVECKV  141 (286)
T ss_dssp             TE--EEEEECGGGCEEEEECTT-S---CEEEEECTTT---------------------CSCEEEEEECTTSCEEEEETTT
T ss_pred             Ce--EEEEcCCCCCEEEEECCC-C---cEEEEecCcc---------------------CCCceEEEEeCCCCEEEEECCC
Confidence            64  5555533 8899999942 2   1111111100                     0125789999999877777778


Q ss_pred             CeEEEEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643          181 SCAYCWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT  258 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  258 (279)
                      +.|.+||.. ++.+..+.  .+...+.+++++|+++++++...++.|++||. .++.+..+..      .++...+..++
T Consensus       142 ~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~------~g~~~~p~~i~  213 (286)
T 1q7f_A          142 MRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGG------EGITNYPIGVG  213 (286)
T ss_dssp             TEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESC------TTTSCSEEEEE
T ss_pred             CEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEcc------CCccCCCcEEE
Confidence            999999964 66666664  34456899999999998888888999999997 5666666632      22335678999


Q ss_pred             EcCCCCEEEEEcCcc-eEEeCC
Q 023643          259 LDASESWLVRVRATN-YVILFS  279 (279)
Q Consensus       259 ~~~~~~~l~~~~~d~-~i~~wd  279 (279)
                      ++++|+++++...++ .|.+||
T Consensus       214 ~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          214 INSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             ECTTCCEEEEECSSSCEEEEEC
T ss_pred             ECCCCCEEEEeCCCCEEEEEEC
Confidence            999999988888876 999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=1.7e-15  Score=117.71  Aligned_cols=211  Identities=12%  Similarity=0.091  Sum_probs=139.3

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      ..+..+...+.+++|+|    ++++++++..++.|.+||..++                   +.......+...+.++++
T Consensus        38 ~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~i~~~d~~~~-------------------~~~~~~~~~~~~~~~i~~   94 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDR----QGQLFLLDVFEGNIFKINPETK-------------------EIKRPFVSHKANPAAIKI   94 (333)
T ss_dssp             EEEESSCCCEEEEEECT----TSCEEEEETTTCEEEEECTTTC-------------------CEEEEEECSSSSEEEEEE
T ss_pred             EEEeccCccccCcEECC----CCCEEEEECCCCEEEEEeCCCC-------------------cEEEEeeCCCCCcceEEE
Confidence            34445556778999999    8998888889999999999863                   222222235567999999


Q ss_pred             cCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643           99 YGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus        99 ~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      +|++.  ++++...+    +.|.+||.+.....   .......                    ....+..++++|+++++
T Consensus        95 ~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~--------------------~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A           95 HKDGR--LFVCYLGDFKSTGGIFAATENGDNLQ---DIIEDLS--------------------TAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             CTTSC--EEEEECTTSSSCCEEEEECTTSCSCE---EEECSSS--------------------SCCCEEEEEECTTSCEE
T ss_pred             CCCCc--EEEEeCCCCCCCceEEEEeCCCCEEE---EEEccCc--------------------cCCcccceEECCCCCEE
Confidence            99987  77777666    68999997542111   0010000                    00136899999999877


Q ss_pred             EEecC------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCC-CceEEEecCCcccc
Q 023643          175 FSAAG------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKS-GKCIKVIDPVKDKQ  246 (279)
Q Consensus       175 ~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~  246 (279)
                      ++...      .+.|..+|..+++..... .....+..++|+|+++.| ++.+.++.|.+||+.+ ++....+.......
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~  228 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  228 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence            76553      366777777655544332 233457899999999855 5556788999999864 44332221000000


Q ss_pred             ccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          247 LKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       247 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.++ ..+..++++++|+++++...++.|.+||
T Consensus       229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d  260 (333)
T 2dg1_A          229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN  260 (333)
T ss_dssp             CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence            0122 3567899999999888887788898886

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=8.9e-16  Score=117.42  Aligned_cols=201  Identities=10%  Similarity=0.005  Sum_probs=140.4

Q ss_pred             eeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      ..+..+.....+++|+|    +++ +++++..++.|..|+..+                   .  ...+..+...+.+++
T Consensus        21 ~~l~~~~~~~eg~~~d~----~g~~l~~~~~~~~~i~~~~~~~-------------------~--~~~~~~~~~~~~~l~   75 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVP----ARSAVIFSDVRQNRTWAWSDDG-------------------Q--LSPEMHPSHHQNGHC   75 (296)
T ss_dssp             EEEECCCSSEEEEEEEG----GGTEEEEEEGGGTEEEEEETTS-------------------C--EEEEESSCSSEEEEE
T ss_pred             EEEecCCccccCCeEeC----CCCEEEEEeCCCCEEEEEECCC-------------------C--eEEEECCCCCcceee
Confidence            44445566788999999    888 788888999999999986                   2  334445667799999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE-
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS-  176 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-  176 (279)
                      +.|++.  ++++...++.|.+||..+.............                     ....+..++++|+|+++++ 
T Consensus        76 ~~~dg~--l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~---------------------~~~~~~~i~~d~~G~l~vtd  132 (296)
T 3e5z_A           76 LNKQGH--LIACSHGLRRLERQREPGGEWESIADSFEGK---------------------KLNSPNDVCLAPDGSLWFSD  132 (296)
T ss_dssp             ECTTCC--EEEEETTTTEEEEECSTTCCEEEEECEETTE---------------------ECCCCCCEEECTTSCEEEEE
T ss_pred             ECCCCc--EEEEecCCCeEEEEcCCCCcEEEEeeccCCC---------------------CCCCCCCEEECCCCCEEEEC
Confidence            999997  7777777789999997543211100000000                     0012578999999998776 


Q ss_pred             ---ec-------------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-CCce---E
Q 023643          177 ---AA-------------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-SGKC---I  236 (279)
Q Consensus       177 ---~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~---~  236 (279)
                         |+             ..+.|..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+|++. +++.   .
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~  210 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG  210 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence               33             13467777765 443 3444566678899999999988888889999999987 5554   2


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+ .       .+...+.+++++++|+++++.  ++.|.+||
T Consensus       211 ~~~-~-------~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          211 VHF-T-------VEPGKTDGLRVDAGGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             EEE-C-------CSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred             eEe-e-------CCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence            333 1       233456789999999977776  67788875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=6.9e-16  Score=119.81  Aligned_cols=190  Identities=11%  Similarity=0.045  Sum_probs=133.7

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCC------------------------CcEEEEeCCCCCcccccccCCcccceeeec
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSD------------------------GSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      -+.+.+++++|    +++++++...+                        ++|.+||..++                   
T Consensus        23 l~~v~~va~d~----~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-------------------   79 (329)
T 3fvz_A           23 PGQVSGVALDS----KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-------------------   79 (329)
T ss_dssp             CSCEEEEEECT----TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-------------------
T ss_pred             cCCceEEEECC----CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-------------------
Confidence            46799999999    89999888877                        46888888763                   


Q ss_pred             ccccccc-CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           81 EPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        81 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      +.+..+. ++-.....+++.|++.  ++++...++.|++|+.+...  .....+.....           .+.  .....
T Consensus        80 ~~~~~~~~~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~-----------~g~--~~~~~  142 (329)
T 3fvz_A           80 EILQSSGKNLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKE--GPLLILGRSMQ-----------PGS--DQNHF  142 (329)
T ss_dssp             CEEEEECTTTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSS--CCSEEESBTTB-----------CCC--STTCC
T ss_pred             eEEeccCCCccCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCe--EEEEEecccCC-----------CCC--Ccccc
Confidence            2222222 3445688999999998  88888889999999974321  01111110000           000  00011


Q ss_pred             CCceeEEEcC-CCCeEEEec-CCCeEEEEecCCCcEEEEeecC----------CcceEEEEEcCC-CcEEEEecCCCeEE
Q 023643          160 PENNAIAVDP-QGGAIFSAA-GDSCAYCWDVESSRIKMVFKGH----------SDYLHCIVARNS-TNQIVTGSEDGTAR  226 (279)
Q Consensus       160 ~~i~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~----------~~~i~~i~~~~~-~~~l~~~~~d~~i~  226 (279)
                      .....++++| ++.++++.+ .++.|++|| .+++.+..+...          -.....++++|+ +.++++...++.|+
T Consensus       143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~  221 (329)
T 3fvz_A          143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ  221 (329)
T ss_dssp             SSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence            2357999999 777777775 689999999 567777776422          234889999998 88888888999999


Q ss_pred             EEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          227 IWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       227 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      +||..+++.+..+..      ..+...+..++|+|
T Consensus       222 ~~~~~~G~~~~~~~~------~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          222 CFKTDTKEFVREIKH------ASFGRNVFAISYIP  250 (329)
T ss_dssp             EEETTTCCEEEEECC------TTTTTCEEEEEEET
T ss_pred             EEECCCCcEEEEEec------cccCCCcceeeecC
Confidence            999988999888853      23445677888988

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.3e-16  Score=135.36  Aligned_cols=203  Identities=10%  Similarity=-0.002  Sum_probs=133.0

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCC----------CcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSD----------GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGP   92 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~   92 (279)
                      |...+..++|+|    |++.|++++.+          ..|++|++.+.....              ......+. .+...
T Consensus       128 ~~~~~~~~~~sp----Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~~~l~~~~~~~  189 (662)
T 3azo_A          128 GGLRWADPVLLP----ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD--------------RSAVRELSDDAHRF  189 (662)
T ss_dssp             TCEEEEEEEEET----TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC--------------GGGSEESSCSCSSE
T ss_pred             CCccccCcEECC----CCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc--------------CCceeEEEecCCCc
Confidence            567889999999    99999998876          589999988610000              01122333 44566


Q ss_pred             eEEEEecCCCCceEEEEeeCCC--------cEEEeecC-CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           93 AYDVKFYGGNEDALLLSCGDDG--------RICGWRWK-EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg--------~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      +..++|+|+++  +|+.++.++        .|++||++ +... .....+...+.                     ..+.
T Consensus       190 ~~~~~~SpDG~--~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~~~~~l~~~~~---------------------~~~~  245 (662)
T 3azo_A          190 VTGPRLSPDGR--QAVWLAWDHPRMPWEGTELKTARVTEDGRF-ADTRTLLGGPE---------------------EAIA  245 (662)
T ss_dssp             ECCCEECTTSS--EEEEEEECTTCCTTTCEEEEEEEECTTSCE-EEEEEEEEETT---------------------BCEE
T ss_pred             ccCceECCCCC--EEEEEECCCCCCCCCCcEEEEEEECCCCcc-cccEEeCCCCC---------------------ceEc
Confidence            78899999998  888777553        79999986 2210 01111111100                     0257


Q ss_pred             eEEEcCCCCeEEEecCCC--eEEEEecCCCcEEEEeecCCcc--------eEEEEEcCCCcEEEEecCCCeEEEE--eCC
Q 023643          164 AIAVDPQGGAIFSAAGDS--CAYCWDVESSRIKMVFKGHSDY--------LHCIVARNSTNQIVTGSEDGTARIW--DCK  231 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~~~~~l~~~~~d~~i~vw--d~~  231 (279)
                      .+.|+|++++++++..++  .|.+||+.+++.......+...        +..++|+|+++++++++. +.++||  |+.
T Consensus       246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~  324 (662)
T 3azo_A          246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE  324 (662)
T ss_dssp             EEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred             ceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence            899999999888887787  6777787777765544433322        567899999999999998 999999  655


Q ss_pred             CCceEEEecCCccccccCcceeeeEE-EEcCCCCEEEEEcCcceEEeC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCI-TLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +++ +..+        ..+...+..+ +++++.-++++++.+....+|
T Consensus       325 ~~~-~~~l--------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          325 SGE-LVDA--------AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             TTE-EEEC--------CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCc-EEEe--------cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            555 5555        4455566666 555444445555666554444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=2e-16  Score=125.61  Aligned_cols=203  Identities=8%  Similarity=0.060  Sum_probs=136.3

Q ss_pred             eeeeeecccceEE-----EEECCCCCCCCCEEEEecC-CCc--EEEEeCCCCCcccccccCCcccceeeeccccccccCC
Q 023643           18 LKEREILTRTVFR-----TVWGPSKDGSPDTIVIASS-DGS--ITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGH   89 (279)
Q Consensus        18 ~~~~~~~~~~v~~-----~~~~~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   89 (279)
                      +..+..|......     .+|+|    |+++|+.++. +|.  |.+||+.+                   ++......++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~g~~~l~~~d~~~-------------------g~~~~lt~~~   79 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTR----DGSKLLFGGAFDGPWNYYLLDLNT-------------------QVATQLTEGR   79 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCT----TSCEEEEEECTTSSCEEEEEETTT-------------------CEEEECCCSS
T ss_pred             eEEecCCcccccchhhcCccCCC----CCCEEEEEEcCCCCceEEEEeCCC-------------------CceEEeeeCC
Confidence            4455555555555     78999    9999988887 674  78888887                   3444445556


Q ss_pred             ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce--eEEE
Q 023643           90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN--AIAV  167 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~  167 (279)
                      ...+..+.|+|+++  .|+.++.++.|++||+.+..... .......                        .+.  ...+
T Consensus        80 ~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~g~~~~-~~~~~~~------------------------~~~~~~~~~  132 (388)
T 3pe7_A           80 GDNTFGGFLSPDDD--ALFYVKDGRNLMRVDLATLEENV-VYQVPAE------------------------WVGYGTWVA  132 (388)
T ss_dssp             CBCSSSCEECTTSS--EEEEEETTTEEEEEETTTCCEEE-EEECCTT------------------------EEEEEEEEE
T ss_pred             CCCccceEEcCCCC--EEEEEeCCCeEEEEECCCCccee-eeechhh------------------------cccccceeE
Confidence            65565678999998  99999999999999987542111 1111110                        011  2234


Q ss_pred             cCCCCeEEEe----------------------cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCC--
Q 023643          168 DPQGGAIFSA----------------------AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSED--  222 (279)
Q Consensus       168 ~~~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d--  222 (279)
                      +|++..++..                      ..+..|.+||+.+++..... .+...+..++|+| +|+.|+..+.+  
T Consensus       133 ~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~  211 (388)
T 3pe7_A          133 NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPH  211 (388)
T ss_dssp             CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred             CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCC
Confidence            8888877632                      24578999999988765544 4667789999999 99988876653  


Q ss_pred             ----CeEEEEeCCCCceEEEecCCccccccCc-ceeeeEEEEcCCCCEEEEEcCc-----ceEEeCC
Q 023643          223 ----GTARIWDCKSGKCIKVIDPVKDKQLKGV-ISCVSCITLDASESWLVRVRAT-----NYVILFS  279 (279)
Q Consensus       223 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd  279 (279)
                          ..|.++|+..++.. .+.       ... ...+..++|+|||+.|+..+.+     ..|.+||
T Consensus       212 ~~~~~~l~~~d~~~~~~~-~l~-------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          212 DLVDARMWLINEDGTNMR-KVK-------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             TTSSCSEEEEETTSCCCE-ESC-------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             CCCcceEEEEeCCCCceE-Eee-------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence                37888887655443 332       122 1457788999999987654432     2388876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=2.6e-16  Score=123.02  Aligned_cols=199  Identities=8%  Similarity=0.005  Sum_probs=127.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---C--cEEEEeCCCCCcccccccCCcccce
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---G--SITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      ++.|.+||+++....   .+    ..+..++|+|    +|++||..+.+   +  .|.+|++.++               
T Consensus        42 ~~~l~~~d~~~~~~~---~l----~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~l~~~~~~~g---------------   95 (347)
T 2gop_A           42 ENTIVIENLKNNARR---FI----ENATMPRISP----DGKKIAFMRANEEKKVSEIWVADLETL---------------   95 (347)
T ss_dssp             EEEEEEEETTTCCEE---EE----ESCEEEEECT----TSSEEEEEEEETTTTEEEEEEEETTTT---------------
T ss_pred             cceEEEEeCCCCceE---Ec----ccCCCeEECC----CCCEEEEEEeccCCCcceEEEEECCCC---------------
Confidence            346777887765432   22    5688899999    99999887654   3  3777787762               


Q ss_pred             eeeccccccccCCccCeEEEEecCCCCceEEEEeeCC---------------------------CcEEEeecCCCccCcc
Q 023643           77 LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDD---------------------------GRICGWRWKEFTESKV  129 (279)
Q Consensus        77 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------------------------g~i~iw~~~~~~~~~~  129 (279)
                          +...... +.. +..+.|+|+++  .|+.++.+                           ..|.+||+.....   
T Consensus        96 ----~~~~l~~-~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~---  164 (347)
T 2gop_A           96 ----SSKKILE-AKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV---  164 (347)
T ss_dssp             ----EEEEEEE-ESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE---
T ss_pred             ----ceEEEEc-CCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE---
Confidence                2222222 233 89999999998  77776632                           4577777653211   


Q ss_pred             eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCC-------eEEEEecCCCcEEEEeecCCc
Q 023643          130 PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDS-------CAYCWDVESSRIKMVFKGHSD  202 (279)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~  202 (279)
                      ...+.. .                       .+..+.|+|++ +++++..+.       ...+|.+.+++.. .+..+ .
T Consensus       165 ~~~l~~-~-----------------------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~  217 (347)
T 2gop_A          165 IEEFEK-P-----------------------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-V  217 (347)
T ss_dssp             EEEEEE-E-----------------------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-E
T ss_pred             EeeecC-C-----------------------CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-c
Confidence            011100 0                       15788999999 777775432       3344443355443 33334 4


Q ss_pred             ceEEEEEcCCCcEEEEecCC--------CeEEEEeCCCCceEEEecCCccccccCcceeeeE-EEEcCCCCEEEEEcCcc
Q 023643          203 YLHCIVARNSTNQIVTGSED--------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC-ITLDASESWLVRVRATN  273 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~  273 (279)
                      .+..+  +|+|++|+.++.+        ..|.+||  +++.....        ..+...+.. +.|+ ++ ++++++.++
T Consensus       218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--------~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--------DEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--------TTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--------ccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            55544  8999988777644        4688888  55544333        355567776 8999 88 888999999


Q ss_pred             eEEeC
Q 023643          274 YVILF  278 (279)
Q Consensus       274 ~i~~w  278 (279)
                      .+++|
T Consensus       284 ~~~l~  288 (347)
T 2gop_A          284 SVNLY  288 (347)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            88887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=2.5e-14  Score=111.22  Aligned_cols=214  Identities=11%  Similarity=-0.004  Sum_probs=136.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC----CcEEEEeCCCCCcccccccCCccccee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD----GSITSYSIPSCISKLPLGLSNSKVQQL   77 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      +|.|.+||.++....  .....+...+.+++++|    +++++++...+    +.|.+||..+...              
T Consensus        65 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~i~~~~----dg~l~v~~~~~~~~~~~i~~~d~~~~~~--------------  124 (333)
T 2dg1_A           65 EGNIFKINPETKEIK--RPFVSHKANPAAIKIHK----DGRLFVCYLGDFKSTGGIFAATENGDNL--------------  124 (333)
T ss_dssp             TCEEEEECTTTCCEE--EEEECSSSSEEEEEECT----TSCEEEEECTTSSSCCEEEEECTTSCSC--------------
T ss_pred             CCEEEEEeCCCCcEE--EEeeCCCCCcceEEECC----CCcEEEEeCCCCCCCceEEEEeCCCCEE--------------
Confidence            567888887765422  11223567899999999    88888887666    6899999886321              


Q ss_pred             eeccccccc--cCCccCeEEEEecCCCCceEEEEeeC------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCC
Q 023643           78 LGIEPDGFL--HGHDGPAYDVKFYGGNEDALLLSCGD------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQH  149 (279)
Q Consensus        78 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (279)
                           ...+  ..+...+..+.+.|++.  ++++...      .+.|..++.+..   . ...+... .           
T Consensus       125 -----~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~-~-----------  181 (333)
T 2dg1_A          125 -----QDIIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFR---T-VTPIIQN-I-----------  181 (333)
T ss_dssp             -----EEEECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSC---C-EEEEEEE-E-----------
T ss_pred             -----EEEEccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCC---E-EEEeecC-C-----------
Confidence                 1111  12345689999999987  6666543      234444443211   1 1111000 0           


Q ss_pred             CCccccCCCCCCceeEEEcCCCCeEEE-ecCCCeEEEEecCC-CcEEEE--------eecCCcceEEEEEcCCCcEEEEe
Q 023643          150 KGPWGALSPVPENNAIAVDPQGGAIFS-AAGDSCAYCWDVES-SRIKMV--------FKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~-~~~~~~--------~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                                ..+..++|+|+++.+++ .+.++.|.+||+.+ +..+..        +.++ ..+..++++++|+++++.
T Consensus       182 ----------~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          182 ----------SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             ----------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE
T ss_pred             ----------CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE
Confidence                      01478999999986654 45678999999964 332221        1122 467889999999988888


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      ..++.|.+||. .++.+..+..+..  ..+|...+.+++|+|++..|+.++.+
T Consensus       251 ~~~~~v~~~d~-~g~~~~~~~~~~~--~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          251 YGQGRVLVFNK-RGYPIGQILIPGR--DEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECTTG--GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCCCEEEEECC-CCCEEEEEEcCCC--ccccccCcceEEECCCCCEEEEEeCc
Confidence            78899999998 5676666632210  01223368899999998777655544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=1.9e-16  Score=125.65  Aligned_cols=215  Identities=8%  Similarity=-0.041  Sum_probs=133.2

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG   84 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (279)
                      |.+||+++...  ......+...+..++|+|    +++.|+.++.++.|++||+.++                   +...
T Consensus        62 l~~~d~~~g~~--~~lt~~~~~~~~~~~~sp----dg~~l~~~~~~~~l~~~d~~~g-------------------~~~~  116 (388)
T 3pe7_A           62 YYLLDLNTQVA--TQLTEGRGDNTFGGFLSP----DDDALFYVKDGRNLMRVDLATL-------------------EENV  116 (388)
T ss_dssp             EEEEETTTCEE--EECCCSSCBCSSSCEECT----TSSEEEEEETTTEEEEEETTTC-------------------CEEE
T ss_pred             EEEEeCCCCce--EEeeeCCCCCccceEEcC----CCCEEEEEeCCCeEEEEECCCC-------------------ccee
Confidence            66677776543  333444555555778999    9999999999999999999984                   3333


Q ss_pred             cccCCccCeEEEE--ecCCCCceEEEE----------------------eeCCCcEEEeecCCCccCcceeeeccCcccc
Q 023643           85 FLHGHDGPAYDVK--FYGGNEDALLLS----------------------CGDDGRICGWRWKEFTESKVPINLQGNHVKP  140 (279)
Q Consensus        85 ~~~~h~~~v~~~~--~~~~~~~~~l~s----------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  140 (279)
                      .+..+...+....  ++|++.  +++.                      .+.+..|.+||+.+...    ..+....   
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~---  187 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES----TVILQEN---  187 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE----EEEEEES---
T ss_pred             eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce----EEeecCC---
Confidence            3334444443333  478887  6653                      22446788888764311    1111000   


Q ss_pred             eEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecCC------CeEEEEecCCCcEEEEeecCC--cceEEEEEcC
Q 023643          141 VLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAGD------SCAYCWDVESSRIKMVFKGHS--DYLHCIVARN  211 (279)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~  211 (279)
                                         ..+..+.|+| +++.|+....+      ..|.++|+..++... +..+.  ..+...+|+|
T Consensus       188 -------------------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~sp  247 (388)
T 3pe7_A          188 -------------------QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVP  247 (388)
T ss_dssp             -------------------SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECT
T ss_pred             -------------------ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECC
Confidence                               0257889999 99988776643      378888887655443 33333  3578889999


Q ss_pred             CCcEEEEecC-----CCeEEEEeCCCCceEEEecCCccccccCccee---eeEEEEcCCCCEEEEE---------cCcce
Q 023643          212 STNQIVTGSE-----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISC---VSCITLDASESWLVRV---------RATNY  274 (279)
Q Consensus       212 ~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~---------~~d~~  274 (279)
                      +|+.|+..+.     ++.|++||+.+++.......      .++...   ...++|+|||+.|+..         ..+..
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  321 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM------PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF  321 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE------CCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC------CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence            9997765443     12499999998875433211      121111   2234799999988754         44567


Q ss_pred             EEeCC
Q 023643          275 VILFS  279 (279)
Q Consensus       275 i~~wd  279 (279)
                      |.+||
T Consensus       322 i~~~d  326 (388)
T 3pe7_A          322 LYVFN  326 (388)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=5.4e-15  Score=114.68  Aligned_cols=215  Identities=11%  Similarity=0.021  Sum_probs=142.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|.+||.++.+.  +..+. .......+++++    ++.++++...++.|.+||..+..                   
T Consensus        63 ~~~v~viD~~t~~~--~~~i~-~~~~p~~i~~~~----~g~lyv~~~~~~~v~~iD~~t~~-------------------  116 (328)
T 3dsm_A           63 SHVIFAIDINTFKE--VGRIT-GFTSPRYIHFLS----DEKAYVTQIWDYRIFIINPKTYE-------------------  116 (328)
T ss_dssp             GTEEEEEETTTCCE--EEEEE-CCSSEEEEEEEE----TTEEEEEEBSCSEEEEEETTTTE-------------------
T ss_pred             CCEEEEEECcccEE--EEEcC-CCCCCcEEEEeC----CCeEEEEECCCCeEEEEECCCCe-------------------
Confidence            47889999887643  44443 346788999998    77555555488999999998742                   


Q ss_pred             ccccccCC-----ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           82 PDGFLHGH-----DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        82 ~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                      ....+...     ......+++ ..+.  ++++.. .++.|.++|+.+...   ........                  
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~-~~~~--lyv~~~~~~~~v~viD~~t~~~---~~~i~~g~------------------  172 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQ-YGKY--VYVNCWSYQNRILKIDTETDKV---VDELTIGI------------------  172 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEE-ETTE--EEEEECTTCCEEEEEETTTTEE---EEEEECSS------------------
T ss_pred             EEEEEEcCCccccCCCcceEEE-ECCE--EEEEcCCCCCEEEEEECCCCeE---EEEEEcCC------------------
Confidence            22222211     113445666 3332  444443 489999999865321   11111100                  


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecCC----------CeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCCCe
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAGD----------SCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSEDGT  224 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~  224 (279)
                           ....+.++|++++++++..+          +.|.++|..+++....+... ......++++|+++.|.++..  .
T Consensus       173 -----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~  245 (328)
T 3dsm_A          173 -----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D  245 (328)
T ss_dssp             -----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred             -----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence                 13578899999877766554          78999999999888777533 236899999999988887765  8


Q ss_pred             EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC-CCCEEEEE----cCcceEEeCC
Q 023643          225 ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRV----RATNYVILFS  279 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~d~~i~~wd  279 (279)
                      |.+||..+++......      +........+++++| ++.++++.    ..++.|.+||
T Consensus       246 v~~~d~~t~~~~~~~~------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          246 IWRMPVEADRVPVRPF------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             EEEEETTCSSCCSSCS------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             EEEEECCCCceeeeee------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            9999998887532110      011134678899999 56666666    6789999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=2.4e-14  Score=108.03  Aligned_cols=215  Identities=7%  Similarity=-0.049  Sum_probs=152.0

Q ss_pred             CCceeeeccccccccceeeeeecc-cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILT-RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      |+.|.+||.++++  .+..+..+. ..+.+++++|    ++++|++  .++.|..||. +                   +
T Consensus        14 ~~~v~~~d~~tG~--~~w~~~~~~~~~~~~~~~~p----dG~ilvs--~~~~V~~~d~-~-------------------G   65 (276)
T 3no2_A           14 WNKIAIINKDTKE--IVWEYPLEKGWECNSVAATK----AGEILFS--YSKGAKMITR-D-------------------G   65 (276)
T ss_dssp             CSEEEEEETTTTE--EEEEEECCTTCCCCEEEECT----TSCEEEE--CBSEEEEECT-T-------------------S
T ss_pred             CCEEEEEECCCCe--EEEEeCCCccCCCcCeEECC----CCCEEEe--CCCCEEEECC-C-------------------C
Confidence            7889999986664  355666554 4788999999    8998883  4678999998 5                   3


Q ss_pred             cccccccCC-ccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           81 EPDGFLHGH-DGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        81 ~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      +.+..+..+ ...+.++.+.|+++  ++++.+. ++.|..++.+    .+....+......      ...+         
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~----Gk~l~~~~~~~~~------~~~~---------  124 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMK----GEVLSKTEFETGI------ERPH---------  124 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTT----SCEEEEEEECCSC------SSGG---------
T ss_pred             CEEEEEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCC----CCEEEEEeccCCC------Cccc---------
Confidence            444444443 24688899999998  8888776 6777766642    1211111100000      0000         


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                       .....+++.++++++++...++.|..||.. ++.+.++... ..+.++...++++.+++++.++.|..+|..+|+.+.+
T Consensus       125 -~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          125 -AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             -GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             -ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence             013456789999999999999999999998 9999998864 4456778889999999999999999999999999998


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      +......  ......+..++..++|.++++..
T Consensus       202 ~~~~~~~--~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          202 VNANDIE--GVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEGGGSB--SCCCSEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCCC--CccccccccceEcCCCCEEEEec
Confidence            8532100  01224578888999999888873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.68  E-value=2.2e-15  Score=117.83  Aligned_cols=190  Identities=10%  Similarity=0.037  Sum_probs=129.9

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      .++..+++++    ...++++|+.++ +++|++........  ....  .    .++.. ...+.. |..|+|  ++.  
T Consensus        38 ~~~nlLais~----~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~--~----~~~~~-~~~lp~-V~~l~f--d~~--   98 (388)
T 1xip_A           38 ASLQNLDISN----SKSLFVAASGSK-AVVGELQLLRDHIT--SDST--P----LTFKW-EKEIPD-VIFVCF--HGD--   98 (388)
T ss_dssp             SCCBCEEEET----TTTEEEEEETTE-EEEEEHHHHHHHHH--SSSC--C----CCCSE-EEECTT-EEEEEE--ETT--
T ss_pred             ccccEEEEcC----CCCEEEEeCCCE-EEEEEhhHhhhhhc--cccc--c----ccceE-EeeCCC-eeEEEE--CCC--
Confidence            4689999999    889999999884 66799765210000  0000  0    11111 223556 999999  776  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      +|+++ .++.|++||++..........+.    .                     .+.++.+.+.  .+++++.||.|.+
T Consensus        99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~~~----~---------------------~v~~i~~~~p--~~av~~~dG~L~v  150 (388)
T 1xip_A           99 QVLVS-TRNALYSLDLEELSEFRTVTSFE----K---------------------PVFQLKNVNN--TLVILNSVNDLSA  150 (388)
T ss_dssp             EEEEE-ESSEEEEEESSSTTCEEEEEECS----S---------------------CEEEEEECSS--EEEEEETTSEEEE
T ss_pred             EEEEE-cCCcEEEEEchhhhccCccceee----c---------------------ceeeEEecCC--CEEEEECCCCEEE
Confidence            88888 88999999987653222111111    1                     1455555543  3888899999999


Q ss_pred             EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce--EEEecCCcccc-ccCcceeeeEEEEcCC
Q 023643          186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC--IKVIDPVKDKQ-LKGVISCVSCITLDAS  262 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~-~~~~~~~v~~~~~~~~  262 (279)
                      ||+.++....    +...|+|++|+|.|  ++.|..||++++|+...++.  ..++..+.... ..+|...|.++.|.++
T Consensus       151 ~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          151 LDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             EETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             EEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence            9999877643    44689999999999  67788999999999887775  56664322110 0246788999999999


Q ss_pred             CCEEEE
Q 023643          263 ESWLVR  268 (279)
Q Consensus       263 ~~~l~~  268 (279)
                      +.++++
T Consensus       225 ~~flv~  230 (388)
T 1xip_A          225 QDFLAV  230 (388)
T ss_dssp             SEEEEE
T ss_pred             CeEEEE
Confidence            998886

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=2.3e-16  Score=125.46  Aligned_cols=218  Identities=5%  Similarity=-0.138  Sum_probs=123.5

Q ss_pred             ceeeeccccccccceeeeeecccc-eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRT-VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      .|.+||+++....   .+..+... ...+.|+|    ++++|+.++.++.|.+|++.+++...........   ...++.
T Consensus        61 ~l~~~d~~~~~~~---~l~~~~~~~~~~~~~sp----dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~g~~  130 (396)
T 3c5m_A           61 NYYLLNLETQQAV---QLTEGKGDNTFGGFIST----DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW---KGYGTW  130 (396)
T ss_dssp             EEEEEETTTTEEE---ECCCSSCBCTTTCEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE---EEEEEE
T ss_pred             eEEEEECCCCcEE---EeecCCCCccccceECC----CCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc---CCCCCE
Confidence            4666777665422   22222233 33478999    9999999999999999999875322111100000   000000


Q ss_pred             cccccCCc-c--CeEEEEecCCCCceEEEEe-----eCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           83 DGFLHGHD-G--PAYDVKFYGGNEDALLLSC-----GDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        83 ~~~~~~h~-~--~v~~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                      +....... .  ....+.|+|+++  .++..     ..+..|.+||+.....   .......                  
T Consensus       131 l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~d~~~g~~---~~~~~~~------------------  187 (396)
T 3c5m_A          131 VANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKVDIETGEL---EVIHQDT------------------  187 (396)
T ss_dssp             EECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEEETTTCCE---EEEEEES------------------
T ss_pred             EEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEEECCCCcE---EeeccCC------------------
Confidence            00000000 0  000034677776  55443     3566788888754311   1111000                  


Q ss_pred             cCCCCCCceeEEEcC-CCCeEEEecCC------CeEEEEecCCCcEEEEeecC-CcceEEEEEcCCCcEEEEecCC----
Q 023643          155 ALSPVPENNAIAVDP-QGGAIFSAAGD------SCAYCWDVESSRIKMVFKGH-SDYLHCIVARNSTNQIVTGSED----  222 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d----  222 (279)
                           ..+..+.|+| ++..|+..+.+      ..|.+||+..++........ ...+..++|+|+|++|+.++.+    
T Consensus       188 -----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          188 -----AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT  262 (396)
T ss_dssp             -----SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred             -----cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence                 1257889999 78766665443      46899998766544433321 3357889999999987776543    


Q ss_pred             -CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC-CCCEEEEEc
Q 023643          223 -GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVR  270 (279)
Q Consensus       223 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  270 (279)
                       +.|++||+.+++.......      .+    .. +.|+| +|+++++++
T Consensus       263 ~~~l~~~d~~~g~~~~l~~~------~~----~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          263 DRVIYKANPETLENEEVMVM------PP----CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             CEEEEEECTTTCCEEEEEEC------CS----EE-EEEECSSSSEEEEEE
T ss_pred             cceEEEEECCCCCeEEeeeC------CC----CC-CCccCCCCceEEEec
Confidence             4599999988876543311      12    22 78999 999888754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=1.2e-14  Score=124.25  Aligned_cols=199  Identities=6%  Similarity=-0.112  Sum_probs=131.8

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCC-----cEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDG-----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      |...+..++|||    |+++||.+..++     +|++||+.++                   +.......+ ..+..++|
T Consensus       123 ~~~~~~~~~~SP----Dg~~la~~~~~~G~~~~~i~v~d~~tg-------------------~~~~~~~~~-~~~~~~~w  178 (710)
T 2xdw_A          123 GTVALRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGA-------------------KELPDVLER-VKFSCMAW  178 (710)
T ss_dssp             SCEEEEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTT-------------------EEEEEEEEE-ECSCCEEE
T ss_pred             CCEEEEEEEECC----CCCEEEEEEcCCCCceEEEEEEECCCC-------------------CCCcccccC-cccceEEE
Confidence            334688999999    999998776543     8999999984                   222211111 23667999


Q ss_pred             cCCCCceEEEEeeCCCc----------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           99 YGGNEDALLLSCGDDGR----------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      +|+++  .|+.++.++.                |++|++.+..... ........           +         ...+
T Consensus       179 spDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~-----------~---------~~~~  235 (710)
T 2xdw_A          179 THDGK--GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPD-----------E---------PKWM  235 (710)
T ss_dssp             CTTSS--EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTT-----------C---------TTCE
T ss_pred             EeCCC--EEEEEEECCccccccccccccCCCCEEEEEECCCCcccc-eEEeccCC-----------C---------CeEE
Confidence            99998  8888877766                9999986432111 11111100           0         0124


Q ss_pred             eeEEEcCCCCeEEEecC-----CCeEEEEecCC------Cc-EEEEeecCCcceEEEEEcCCCcEEEEecC----CCeEE
Q 023643          163 NAIAVDPQGGAIFSAAG-----DSCAYCWDVES------SR-IKMVFKGHSDYLHCIVARNSTNQIVTGSE----DGTAR  226 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~------~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d~~i~  226 (279)
                      ..+.|+|++++|+.++.     +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+.    .+.|.
T Consensus       236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~  314 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI  314 (710)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred             EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence            68899999998887654     56899999986      43 35556656665554 47888887665544    34699


Q ss_pred             EEeCCCCce--EEEecCCccccccCcc--eeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          227 IWDCKSGKC--IKVIDPVKDKQLKGVI--SCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       227 vwd~~~~~~--~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +||+.+++.  ...+.        .|.  ..+..++|++++.++++...|+..+||
T Consensus       315 ~~d~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          315 NIDFTDPEESKWKVLV--------PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             EEETTSCCGGGCEEEE--------CCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             EEeCCCCCcccceecc--------CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            999987642  23332        222  367888999888888888888865554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.66  E-value=2.2e-14  Score=108.25  Aligned_cols=181  Identities=12%  Similarity=-0.005  Sum_probs=135.3

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCc-cCeEEEEecCCCCceEEEEeeCCCcEEE
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHD-GPAYDVKFYGGNEDALLLSCGDDGRICG  118 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~i  118 (279)
                      .+++|++++.++.|.+||..+                   ++.+..+..+. ..+.++.+.|+++  +|+  +.++.|..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t-------------------G~~~w~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~   60 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT-------------------KEIVWEYPLEKGWECNSVAATKAGE--ILF--SYSKGAKM   60 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT-------------------TEEEEEEECCTTCCCCEEEECTTSC--EEE--ECBSEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCC-------------------CeEEEEeCCCccCCCcCeEECCCCC--EEE--eCCCCEEE
Confidence            368999999999999999987                   55556666554 4688999999997  777  34778999


Q ss_pred             eecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEe
Q 023643          119 WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       119 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~  197 (279)
                      ||. +.   +....+.....                     ..+.++.+.|+++.+++.+. ++.|..+|. +++.+..+
T Consensus        61 ~d~-~G---~~~W~~~~~~~---------------------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~  114 (276)
T 3no2_A           61 ITR-DG---RELWNIAAPAG---------------------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKT  114 (276)
T ss_dssp             ECT-TS---CEEEEEECCTT---------------------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEE
T ss_pred             ECC-CC---CEEEEEcCCCC---------------------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEE
Confidence            986 22   22222222110                     02578889999999998877 788888886 68887776


Q ss_pred             ec------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          198 KG------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       198 ~~------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      ..      +......+++.++|+++++...++.|.+||.. |+.+.++...         ....++.+.++++++++++.
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---------~~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          115 EFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---------GTPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             EECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---------SCCCEEEECTTSCEEEECBT
T ss_pred             eccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---------CCccceeEcCCCCEEEEeCC
Confidence            52      22345566788999999999999999999987 9999888431         23456778899999999888


Q ss_pred             cceEEeCC
Q 023643          272 TNYVILFS  279 (279)
Q Consensus       272 d~~i~~wd  279 (279)
                      ++.|..+|
T Consensus       185 ~~~v~~~d  192 (276)
T 3no2_A          185 AHCFVQLN  192 (276)
T ss_dssp             TSEEEEEC
T ss_pred             CCeEEEEe
Confidence            88887765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=2.1e-14  Score=111.35  Aligned_cols=217  Identities=10%  Similarity=-0.010  Sum_probs=144.6

Q ss_pred             CCceeeeccccccccceeee------eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccc
Q 023643            2 CGDSTNWDEDAYRKSILKER------EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      ++.|.++|.++.+.  ....      .........+.+..     +.++++...++.|.+||..+               
T Consensus        16 ~~~l~~~d~~t~~~--~~~i~~~~n~~~lg~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t---------------   73 (328)
T 3dsm_A           16 NATLSYYDPATCEV--ENEVFYRANGFKLGDVAQSMVIRD-----GIGWIVVNNSHVIFAIDINT---------------   73 (328)
T ss_dssp             CBEEEEEETTTTEE--ECSHHHHHHSSCCBSCEEEEEEET-----TEEEEEEGGGTEEEEEETTT---------------
T ss_pred             CceEEEEECCCCEE--hhhhHhhhcCcccCccceEEEEEC-----CEEEEEEcCCCEEEEEECcc---------------
Confidence            67899999887642  2111      01123456777743     56777777789999999998               


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                          ++.+..+. .......+++++++.  .+++...++.|.+||+.+...   .........           .     
T Consensus        74 ----~~~~~~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~---~~~i~~g~~-----------~-----  127 (328)
T 3dsm_A           74 ----FKEVGRIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEI---TGYIECPDM-----------D-----  127 (328)
T ss_dssp             ----CCEEEEEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEE---EEEEECTTC-----------C-----
T ss_pred             ----cEEEEEcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeE---EEEEEcCCc-----------c-----
Confidence                44444443 235678899988874  556655899999999865321   111111000           0     


Q ss_pred             CCCCCCceeEEEcCCCCeEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC----------C
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED----------G  223 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------~  223 (279)
                       ........+++  ++..++++.  .++.|.++|+.+++.+..+... .....++++|+|++++++..+          +
T Consensus       128 -~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~  203 (328)
T 3dsm_A          128 -MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP  203 (328)
T ss_dssp             -TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred             -ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence             00001346666  345555554  4889999999999988887643 345788999999988887665          7


Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .|.++|..+++....+...       .......++|+|++++|+++..  .|.+||
T Consensus       204 ~v~~id~~t~~v~~~~~~~-------~g~~p~~la~~~d~~~lyv~~~--~v~~~d  250 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKFK-------LGDWPSEVQLNGTRDTLYWINN--DIWRMP  250 (328)
T ss_dssp             EEEEEETTTTEEEEEEECC-------TTCCCEEEEECTTSCEEEEESS--SEEEEE
T ss_pred             eEEEEECCCCeEEEEEecC-------CCCCceeEEEecCCCEEEEEcc--EEEEEE
Confidence            8999999999888776421       1135789999999998888765  666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=5.1e-13  Score=101.98  Aligned_cols=217  Identities=10%  Similarity=-0.020  Sum_probs=146.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|.+||.+ ...... ....+...+.++++.+    ++.++++...++.|..|+....                  ..
T Consensus        35 ~~~v~~~d~~-~~~~~~-~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~~~~g~------------------~~   90 (299)
T 2z2n_A           35 ANMISCINLD-GKITEY-PLPTPDAKVMCLTISS----DGEVWFTENAANKIGRITKKGI------------------IK   90 (299)
T ss_dssp             TTEEEEECTT-CCEEEE-ECSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTTSC------------------EE
T ss_pred             CCcEEEEcCC-CCeEEe-cCCcccCceeeEEECC----CCCEEEeCCCCCeEEEECCCCc------------------EE
Confidence            3567778766 321111 1122446789999999    8888888777889999997631                  00


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                       ...+......+.++++.|++.  ++++...++.|.+||.. ...  .......                      ....
T Consensus        91 -~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~-g~~--~~~~~~~----------------------~~~~  142 (299)
T 2z2n_A           91 -EYTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDD-GKI--REYELPN----------------------KGSY  142 (299)
T ss_dssp             -EEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT-CCE--EEEECSS----------------------TTCC
T ss_pred             -EEeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCC-CCE--EEecCCC----------------------CCCC
Confidence             011112345688999999887  77777778899999862 211  1000000                      0012


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +..+++++++..+++...++.|..||. +++.... +......+.+++++++++++++...++.|.+||. +++... +.
T Consensus       143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~  219 (299)
T 2z2n_A          143 PSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK  219 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE
T ss_pred             CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE
Confidence            678999999987777777789999998 6665442 3334456889999999998888777899999998 666443 31


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .      ..+...+.+++++++|+++++...++.|..||
T Consensus       220 ~------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          220 I------PTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             C------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             C------CCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            1      23445688999999999777776777777764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=9.2e-15  Score=114.82  Aligned_cols=62  Identities=11%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             EEEcCCCcEEEEecC-----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643          207 IVARNSTNQIVTGSE-----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV  275 (279)
Q Consensus       207 i~~~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  275 (279)
                      ++|+|+++.++++..           .+.|.+||+.+++.+..+        ..+.  ..+++|+|+|++|++++. +.|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i--------~~~~--p~~ia~spdg~~l~v~n~-~~v  327 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI--------PGRD--ALSMTIDQQRNLMLTLDG-GNV  327 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE--------ECTT--CCEEEEETTTTEEEEECS-SCE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE--------ecCC--eeEEEECCCCCEEEEeCC-CeE
Confidence            567777666655432           347999999999998888        3444  889999999999999887 999


Q ss_pred             EeCC
Q 023643          276 ILFS  279 (279)
Q Consensus       276 ~~wd  279 (279)
                      .+||
T Consensus       328 ~v~D  331 (361)
T 2oiz_A          328 NVYD  331 (361)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=5.3e-14  Score=105.96  Aligned_cols=194  Identities=13%  Similarity=0.059  Sum_probs=132.7

Q ss_pred             ceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           27 TVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ...++++++    ++++++ +...++.|.+|+..+..                   .......+...+.++++.+++.  
T Consensus        25 ~p~~i~~~~----~g~l~v~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~p~~i~~~~~g~--   79 (270)
T 1rwi_B           25 SPSGVAVDS----AGNVYVTSEGMYGRVVKLATGSTG-------------------TTVLPFNGLYQPQGLAVDGAGT--   79 (270)
T ss_dssp             CEEEEEECT----TCCEEEEECSSSCEEEEECC------------------------EECCCCSCCSCCCEEECTTCC--
T ss_pred             CccceEECC----CCCEEEEccCCCCcEEEecCCCcc-------------------cceEeeCCcCCcceeEECCCCC--
Confidence            678899999    888777 55778899999976521                   1111112334577899999886  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      ++++.. ++.|.+||.+....    .......                     ...+..++++|++.++++...++.|.+
T Consensus        80 l~v~~~-~~~i~~~d~~~~~~----~~~~~~~---------------------~~~p~~i~~~~~g~l~v~~~~~~~i~~  133 (270)
T 1rwi_B           80 VYVTDF-NNRVVTLAAGSNNQ----TVLPFDG---------------------LNYPEGLAVDTQGAVYVADRGNNRVVK  133 (270)
T ss_dssp             EEEEET-TTEEEEECTTCSCC----EECCCCS---------------------CSSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             EEEEcC-CCEEEEEeCCCceE----eeeecCC---------------------cCCCcceEECCCCCEEEEECCCCEEEE
Confidence            666665 88999999653211    1111000                     012578999999987777677889999


Q ss_pred             EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCE
Q 023643          186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW  265 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  265 (279)
                      |+..+.............+.+++++++++++++...++.|.+||..........        ..+...+.+++++++|.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~p~~i~~d~~g~l  205 (270)
T 1rwi_B          134 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------FTDITAPWGIAVDEAGTV  205 (270)
T ss_dssp             ECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------CSSCCSEEEEEECTTCCE
T ss_pred             EECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------ccCCCCceEEEECCCCCE
Confidence            987655443332233346788999999998888878899999998766544322        122256789999999988


Q ss_pred             EEEEcCcceEEeCC
Q 023643          266 LVRVRATNYVILFS  279 (279)
Q Consensus       266 l~~~~~d~~i~~wd  279 (279)
                      +++...++.|.+||
T Consensus       206 ~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          206 YVTEHNTNQVVKLL  219 (270)
T ss_dssp             EEEETTTSCEEEEC
T ss_pred             EEEECCCCcEEEEc
Confidence            88887788888875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=1.1e-15  Score=121.49  Aligned_cols=212  Identities=8%  Similarity=0.002  Sum_probs=128.7

Q ss_pred             eEEEEECCCCCCCCCEEEEecCC---CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSD---GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      +..++|+|    +|++|+.....   ..|.+|++.++                   +......++......+.|+|+++ 
T Consensus        38 ~~~~~~Sp----dG~~l~~~~~~~g~~~l~~~d~~~~-------------------~~~~l~~~~~~~~~~~~~spdg~-   93 (396)
T 3c5m_A           38 FYQKCFTQ----DGKKLLFAGDFDGNRNYYLLNLETQ-------------------QAVQLTEGKGDNTFGGFISTDER-   93 (396)
T ss_dssp             TTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTT-------------------EEEECCCSSCBCTTTCEECTTSS-
T ss_pred             eecCcCCC----CCCEEEEEEecCCCceEEEEECCCC-------------------cEEEeecCCCCccccceECCCCC-
Confidence            67789999    89998776443   36888888763                   22222222222233478999998 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-----cC
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-----AG  179 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~  179 (279)
                       +|+.++.++.|++|++...... ............-..+..........     .....+.|+|+++.++.+     ..
T Consensus        94 -~l~~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~~~~~~spdg~~~~~~~~~~~~~  166 (396)
T 3c5m_A           94 -AFFYVKNELNLMKVDLETLEEQ-VIYTVDEEWKGYGTWVANSDCTKLVG-----IEILKRDWQPLTSWEKFAEFYHTNP  166 (396)
T ss_dssp             -EEEEEETTTEEEEEETTTCCEE-EEEECCTTEEEEEEEEECTTSSEEEE-----EEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred             -EEEEEEcCCcEEEEECCCCCcE-EEEecccccCCCCCEEEeccCCcccc-----ccccccccCCCCcceeeeeeccCCC
Confidence             9999999999999998653211 11111111000000000000000000     000113578888877654     45


Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcC-CCcEEEEecCC------CeEEEEeCCCCceEEEecCCccccccC-cc
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARN-STNQIVTGSED------GTARIWDCKSGKCIKVIDPVKDKQLKG-VI  251 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~  251 (279)
                      +..|++||+.+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+..++.....        .. ..
T Consensus       167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~~~~  237 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--------EHAEG  237 (396)
T ss_dssp             CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--------CCCTT
T ss_pred             cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--------ccCCC
Confidence            678999999988766555 4667789999999 78877665543      46888998765543322        11 13


Q ss_pred             eeeeEEEEcCCCCEEEEEcCc-----ceEEeCC
Q 023643          252 SCVSCITLDASESWLVRVRAT-----NYVILFS  279 (279)
Q Consensus       252 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd  279 (279)
                      ..+..++|+|+|++|+.++.+     +.|++||
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKAN  270 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEEC
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEE
Confidence            467889999999988877554     4588886

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=5.7e-14  Score=120.09  Aligned_cols=221  Identities=9%  Similarity=-0.023  Sum_probs=142.6

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCc----------------EEEEeCCCCCccccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGS----------------ITSYSIPSCISKLPL   67 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~----------------i~iw~~~~~~~~~~~   67 (279)
                      .|++||+++++.  +.... ....+..++|+|    |++.|+.++.++.                |++|++.+.....  
T Consensus       152 ~i~v~d~~tg~~--~~~~~-~~~~~~~~~wsp----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~--  222 (710)
T 2xdw_A          152 TIKFMKVDGAKE--LPDVL-ERVKFSCMAWTH----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED--  222 (710)
T ss_dssp             EEEEEETTTTEE--EEEEE-EEECSCCEEECT----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--
T ss_pred             EEEEEECCCCCC--Ccccc-cCcccceEEEEe----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc--
Confidence            789999988753  22111 222367899999    9999999887766                9999998742100  


Q ss_pred             ccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeC-----CCcEEEeecCCCc----cCcceeeeccCcc
Q 023643           68 GLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-----DGRICGWRWKEFT----ESKVPINLQGNHV  138 (279)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iw~~~~~~----~~~~~~~~~~~~~  138 (279)
                                   ..+.....|...+..+.|+|+++  +|+..+.     +..|.+||+....    .......+..+..
T Consensus       223 -------------~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~  287 (710)
T 2xdw_A          223 -------------ILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE  287 (710)
T ss_dssp             -------------EEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred             -------------eEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence                         01112223556688999999998  7776654     5689999986410    0001111111110


Q ss_pred             cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC----CeEEEEecCCCcE--EEEeecCCc--ceEEEEEc
Q 023643          139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD----SCAYCWDVESSRI--KMVFKGHSD--YLHCIVAR  210 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~--~~~~~~~~~--~i~~i~~~  210 (279)
                                            .+.. .|+|++..|+..+..    +.|.+||+.++..  ...+..|..  .+..++|+
T Consensus       288 ----------------------~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~  344 (710)
T 2xdw_A          288 ----------------------GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV  344 (710)
T ss_dssp             ----------------------SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ----------------------cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence                                  1222 478888877766543    4699999987642  234444433  68889998


Q ss_pred             CCCcEEEEecCCCe--EEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-c---CcceEEeCC
Q 023643          211 NSTNQIVTGSEDGT--ARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-R---ATNYVILFS  279 (279)
Q Consensus       211 ~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~d~~i~~wd  279 (279)
                      +++.++++...++.  |.+||+.+++.+..+        ..+...+..++++|++..++.. +   ..+.+.+||
T Consensus       345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l--------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIF--------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEE--------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             cCCEEEEEEEECCEEEEEEEECCCCCEEEec--------CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            88888888888885  666787778877777        3446678889999998766533 2   245676664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=2.6e-13  Score=104.48  Aligned_cols=220  Identities=11%  Similarity=0.046  Sum_probs=137.6

Q ss_pred             CCceeeeccccccccceee--eeecccceEEEEECCCCCCC-CCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILKE--REILTRTVFRTVWGPSKDGS-PDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      +|.|..||.++.+...+..  ..++...+.++++++    + ++++++... +.|.+|+.. +......           
T Consensus        45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~----~~g~l~v~~~~-~~l~~~d~~-g~~~~~~-----------  107 (314)
T 1pjx_A           45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR----DANQLFVADMR-LGLLVVQTD-GTFEEIA-----------  107 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS----SSSEEEEEETT-TEEEEEETT-SCEEECC-----------
T ss_pred             CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec----CCCcEEEEECC-CCEEEEeCC-CCEEEEE-----------
Confidence            4678888876554321111  012446789999999    7 666665544 478889887 3211000           


Q ss_pred             ecccccccc-CCccCeEEEEecCCCCceEEEEeeCC---------------CcEEEeecCCCccCcceeeeccCcccceE
Q 023643           79 GIEPDGFLH-GHDGPAYDVKFYGGNEDALLLSCGDD---------------GRICGWRWKEFTESKVPINLQGNHVKPVL  142 (279)
Q Consensus        79 ~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~  142 (279)
                          ..... .....+.++++.+++.  ++++...+               +.|..++.+ .   ... ......     
T Consensus       108 ----~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~-~~~~~~-----  171 (314)
T 1pjx_A          108 ----KKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---QMI-QVDTAF-----  171 (314)
T ss_dssp             ----SBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---CEE-EEEEEE-----
T ss_pred             ----eccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEEECCC-C---CEE-EeccCC-----
Confidence                00001 1224578999999987  66666554               455555532 1   111 110000     


Q ss_pred             EeecCCCCCccccCCCCCCceeEEEc----CCCCeEEEe-cCCCeEEEEecC-CCc-----EEEEeecCC-cceEEEEEc
Q 023643          143 DLVNHQHKGPWGALSPVPENNAIAVD----PQGGAIFSA-AGDSCAYCWDVE-SSR-----IKMVFKGHS-DYLHCIVAR  210 (279)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~i~d~~-~~~-----~~~~~~~~~-~~i~~i~~~  210 (279)
                                       .....++++    |+++.++++ ..++.|.+||+. +++     ....+..+. ..+..++++
T Consensus       172 -----------------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          172 -----------------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             -----------------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             -----------------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence                             014678899    998766554 567899999986 443     222333343 567899999


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE-EEEcCcceEEeCC
Q 023643          211 NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL-VRVRATNYVILFS  279 (279)
Q Consensus       211 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd  279 (279)
                      ++|+++++...++.|.+||..+++.+..+        ..+...+.+++|+|+++.| ++...++.|..|+
T Consensus       235 ~~G~l~v~~~~~~~i~~~d~~~g~~~~~~--------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          235 EDNNLLVANWGSSHIEVFGPDGGQPKMRI--------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             TTCCEEEEEETTTEEEEECTTCBSCSEEE--------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCCcEeEEE--------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            99998888878899999999877776666        3344578999999999955 4555567776653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=7.3e-14  Score=119.11  Aligned_cols=198  Identities=7%  Similarity=-0.105  Sum_probs=130.3

Q ss_pred             ecccceEEEEECCCCCCCCCEEE-----EecCCCcEEEEeCCCCCcccccccCCcccceeeecccc-c-cccCCccCeEE
Q 023643           23 ILTRTVFRTVWGPSKDGSPDTIV-----IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD-G-FLHGHDGPAYD   95 (279)
Q Consensus        23 ~~~~~v~~~~~~~~~~~~~~~l~-----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~   95 (279)
                      +|...+..++|||    ||++||     .|+.+.+|++||+.++                   +.+ . .+...  ....
T Consensus       118 ~~~~~~~~~~~SP----DG~~la~~~~~~G~~~~~i~v~dl~tg-------------------~~~~~~~~~~~--~~~~  172 (695)
T 2bkl_A          118 DGTVSLGTWAVSW----DGKKVAFAQKPNAADEAVLHVIDVDSG-------------------EWSKVDVIEGG--KYAT  172 (695)
T ss_dssp             SSCEEEEEEEECT----TSSEEEEEEEETTCSCCEEEEEETTTC-------------------CBCSSCCBSCC--TTCC
T ss_pred             CCCEEEEEEEECC----CCCEEEEEECCCCCceEEEEEEECCCC-------------------CCcCCcccCcc--cccc
Confidence            3455789999999    999998     4455678999999984                   222 1 11111  1257


Q ss_pred             EEecCCCCceEEEEeeCCCc-------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           96 VKFYGGNEDALLLSCGDDGR-------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      ++|+|+++  .|+.++.|..             |++|++.+...... .......           +         ...+
T Consensus       173 ~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-lv~~~~~-----------~---------~~~~  229 (695)
T 2bkl_A          173 PKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT-VVHERTG-----------D---------PTTF  229 (695)
T ss_dssp             CEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-EEECCCC-----------C---------TTCE
T ss_pred             eEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce-EEEecCC-----------C---------CEEE
Confidence            89999998  8888888776             99999865422111 1111100           0         0125


Q ss_pred             eeEEEcCCCCeEEEecCCC----eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCCce
Q 023643          163 NAIAVDPQGGAIFSAAGDS----CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSGKC  235 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~  235 (279)
                      ..+.|+|+|++|+.++.++    .|.++|..+++... +..+...+....+ +++.+++...   .++.|.+||+.+++.
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~  307 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR  307 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence            7889999999988877655    78888776565433 4445555566666 5666544444   368899999987753


Q ss_pred             ---EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          236 ---IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       236 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                         ...+.       ......+..++|+ ++.++++...|+..++|
T Consensus       308 ~~~~~l~~-------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          308 ASWKEIVP-------EDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             GGCEEEEC-------CCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cCCeEEec-------CCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence               33331       1124567888888 67888888889988876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=5.9e-14  Score=109.64  Aligned_cols=197  Identities=10%  Similarity=0.060  Sum_probs=126.8

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCC---------------------------CcEEEEe
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSD---------------------------GSITSYS   57 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------------------------g~i~iw~   57 (279)
                      |.+|++++.....   +..+.. +..++|+|    +++.|+.++.+                           ..|.+|+
T Consensus        87 l~~~~~~~g~~~~---l~~~~~-~~~~~wsp----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d  158 (347)
T 2gop_A           87 IWVADLETLSSKK---ILEAKN-IRSLEWNE----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD  158 (347)
T ss_dssp             EEEEETTTTEEEE---EEEESE-EEEEEECT----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred             EEEEECCCCceEE---EEcCCC-ccceeECC----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence            6666776654222   222234 99999999    89988887632                           5688888


Q ss_pred             CCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC-------cEEEeecCCCccCcce
Q 023643           58 IPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG-------RICGWRWKEFTESKVP  130 (279)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iw~~~~~~~~~~~  130 (279)
                      +.++                   +.+..+.. . .+..+.|+|++   +++++..++       ...+|.++..   . .
T Consensus       159 ~~~~-------------------~~~~~l~~-~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~---~-~  210 (347)
T 2gop_A          159 TESE-------------------EVIEEFEK-P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDG---K-E  210 (347)
T ss_dssp             TTTT-------------------EEEEEEEE-E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETT---E-E
T ss_pred             CCCC-------------------eEEeeecC-C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCC---c-e
Confidence            8763                   22122222 2 67889999987   566665542       4556655411   1 1


Q ss_pred             eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC--------CeEEEEecCCCcEEEEeecCCc
Q 023643          131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD--------SCAYCWDVESSRIKMVFKGHSD  202 (279)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~  202 (279)
                      ..+..+  .                     .+..+  +|+|+.|+.++.+        ..|.+||  +++.......+..
T Consensus       211 ~~l~~~--~---------------------~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~  263 (347)
T 2gop_A          211 EKMFEK--V---------------------SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR  263 (347)
T ss_dssp             EEEEEE--E---------------------SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred             EEeccC--c---------------------ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence            111110  0                     12333  8999988776643        4688888  6666555556677


Q ss_pred             ceEE-EEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE-EeC
Q 023643          203 YLHC-IVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV-ILF  278 (279)
Q Consensus       203 ~i~~-i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-~~w  278 (279)
                      .+.. +.|+ ++ ++++++.++.++|| +.+++....+         .+...|.+++|+|  .++++++.++.. .+|
T Consensus       264 ~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~---------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          264 GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA---------KGRHWIMGFDVDE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE---------CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred             ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe---------cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence            8886 8999 88 88999999999999 8766654433         3356789999999  667777666543 444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=6.3e-14  Score=119.48  Aligned_cols=218  Identities=12%  Similarity=-0.024  Sum_probs=135.2

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCc-------------EEEEeCCCCCccccccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGS-------------ITSYSIPSCISKLPLGL   69 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-------------i~iw~~~~~~~~~~~~~   69 (279)
                      .+|++||+++++......+.  ......++|+|    |++.|+.++.|..             |++|++.+....     
T Consensus       147 ~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wsp----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-----  215 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSKVDVIE--GGKYATPKWTP----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-----  215 (695)
T ss_dssp             CEEEEEETTTCCBCSSCCBS--CCTTCCCEECT----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-----
T ss_pred             EEEEEEECCCCCCcCCcccC--cccccceEEec----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-----
Confidence            47999999887531011111  11126789999    9999999988776             999999874211     


Q ss_pred             CCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC----cEEEeecCCCccCcceeeeccCcccceEEee
Q 023643           70 SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG----RICGWRWKEFTESKVPINLQGNHVKPVLDLV  145 (279)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (279)
                                ...+.....|...+..+.|+|+++  +|+..+.++    .|.+|+....   . ...+..+..       
T Consensus       216 ----------~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~~~~~~---~-~~~l~~~~~-------  272 (695)
T 2bkl_A          216 ----------DTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWKRPGEK---D-FRLLVKGVG-------  272 (695)
T ss_dssp             ----------CEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEECTTCS---S-CEEEEECSS-------
T ss_pred             ----------ceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEEcCCCC---c-eEEeecCCC-------
Confidence                      011222334556788999999998  777666555    5555543211   1 111111110       


Q ss_pred             cCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEEEecCCCcE---EEEeecC-CcceEEEEEcCCCcEEE
Q 023643          146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYCWDVESSRI---KMVFKGH-SDYLHCIVARNSTNQIV  217 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~---~~~~~~~-~~~i~~i~~~~~~~~l~  217 (279)
                                     .+....+ +++. ++..+.    ++.|.+||+.+++.   ...+..+ ...+..++++ ++.+++
T Consensus       273 ---------------~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~  334 (695)
T 2bkl_A          273 ---------------AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSL  334 (695)
T ss_dssp             ---------------CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred             ---------------ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence                           1234445 5566 544443    58899999987653   3333333 4567888887 678888


Q ss_pred             EecCCCeEEEEeCC-CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE----cCcceEEeCC
Q 023643          218 TGSEDGTARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV----RATNYVILFS  279 (279)
Q Consensus       218 ~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~wd  279 (279)
                      +...|+..+||.+. .++....+..       .....+..++++|++..++..    ...+.|++||
T Consensus       335 ~~~~dg~~~l~~~~~~g~~~~~l~~-------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d  394 (695)
T 2bkl_A          335 EYLKDATSEVRVATLKGKPVRTVQL-------PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS  394 (695)
T ss_dssp             EEEETTEEEEEEEETTCCEEEECCC-------SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEECCEEEEEEEeCCCCeeEEecC-------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            99999998888654 4655555531       124567788899998777633    2346777774

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=2.3e-12  Score=98.48  Aligned_cols=207  Identities=8%  Similarity=0.005  Sum_probs=132.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ++.|..||.++...   ..+ .....+.+++++|    +++++++.  ++.|.+||..++...                 
T Consensus        34 ~~~i~~~d~~~~~~---~~~-~~~~~~~~i~~~~----dG~l~v~~--~~~l~~~d~~~g~~~-----------------   86 (297)
T 3g4e_A           34 AKKVCRWDSFTKQV---QRV-TMDAPVSSVALRQ----SGGYVATI--GTKFCALNWKEQSAV-----------------   86 (297)
T ss_dssp             TTEEEEEETTTCCE---EEE-ECSSCEEEEEEBT----TSSEEEEE--TTEEEEEETTTTEEE-----------------
T ss_pred             CCEEEEEECCCCcE---EEE-eCCCceEEEEECC----CCCEEEEE--CCeEEEEECCCCcEE-----------------
Confidence            35677777766432   222 2346799999999    88866554  567999998763211                 


Q ss_pred             cccccc--CCccCeEEEEecCCCCceEEEEeeCC---------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           82 PDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDD---------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        82 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                      .+....  .....++.+++.|++.  ++++....         ..-.+|.++...  ........ .             
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~~~~-~-------------  148 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDH--HVKKYFDQ-V-------------  148 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTS--CEEEEEEE-E-------------
T ss_pred             EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCC--CEEEEeec-c-------------
Confidence            111111  1224578899999987  66554322         234555553211  11110000 0             


Q ss_pred             CccccCCCCCCceeEEEcCCCCeEE-EecCCCeEEEEec--CCCcEE-----EEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          151 GPWGALSPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDV--ESSRIK-----MVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~-----~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                               ...+.++|+|+++.|+ +.+.++.|.+||+  .++...     ..+..+...+..++++++|++.++....
T Consensus       149 ---------~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          149 ---------DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             ---------SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred             ---------ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence                     0147899999998665 4556789999987  455432     2233344678899999999988888788


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc-CCCCEEEEEc
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVRVR  270 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  270 (279)
                      +.|.+||..+++.+..+.        .+...+++++|. |+++.|+.++
T Consensus       220 ~~v~~~d~~tG~~~~~i~--------~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVK--------LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TEEEEECTTTCCEEEEEE--------CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CEEEEEcCCCceEEEEEE--------CCCCCceEEEEeCCCCCEEEEEc
Confidence            899999999899988883        444578999998 8877665544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=9.7e-12  Score=94.82  Aligned_cols=197  Identities=11%  Similarity=0.038  Sum_probs=138.2

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      +...+.++++.+    ++.++++...++.|.+|+.. ...                 . ......+...+.++++.+++.
T Consensus        13 ~~~~~~~i~~d~----~g~l~v~~~~~~~v~~~d~~-~~~-----------------~-~~~~~~~~~~~~~i~~~~~g~   69 (299)
T 2z2n_A           13 QDTGPYGITVSD----KGKVWITQHKANMISCINLD-GKI-----------------T-EYPLPTPDAKVMCLTISSDGE   69 (299)
T ss_dssp             SSCCEEEEEECT----TSCEEEEETTTTEEEEECTT-CCE-----------------E-EEECSSTTCCEEEEEECTTSC
T ss_pred             cCCCccceEECC----CCCEEEEecCCCcEEEEcCC-CCe-----------------E-EecCCcccCceeeEEECCCCC
Confidence            446789999999    89988877778899999987 311                 0 011112345688999999987


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        ++++...++.|..|+.+. .  ........                      ....+..+++++++.++++...++.|
T Consensus        70 --l~v~~~~~~~i~~~~~~g-~--~~~~~~~~----------------------~~~~~~~i~~~~~g~l~v~~~~~~~i  122 (299)
T 2z2n_A           70 --VWFTENAANKIGRITKKG-I--IKEYTLPN----------------------PDSAPYGITEGPNGDIWFTEMNGNRI  122 (299)
T ss_dssp             --EEEEETTTTEEEEECTTS-C--EEEEECSS----------------------TTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             --EEEeCCCCCeEEEECCCC-c--EEEEeCCC----------------------cCCCceeeEECCCCCEEEEecCCceE
Confidence              777777788899998641 1  11111000                      01136789999999877777778899


Q ss_pred             EEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          184 YCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       184 ~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ..||. +++.... .......+..++++++++.+++...++.|..||. +++......       ......+.+++++++
T Consensus       123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-------~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          123 GRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI-------PTPASGPVGITKGND  193 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------SSTTCCEEEEEECTT
T ss_pred             EEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC-------CCCCCcceeEEECCC
Confidence            99998 5554432 2234467899999999998888888899999998 666544311       223345789999999


Q ss_pred             CCEEEEEcCcceEEeCC
Q 023643          263 ESWLVRVRATNYVILFS  279 (279)
Q Consensus       263 ~~~l~~~~~d~~i~~wd  279 (279)
                      +.++++...++.|.+||
T Consensus       194 g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          194 DALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             SSEEEEETTTTEEEEEC
T ss_pred             CCEEEEccCCceEEEEC
Confidence            99888877778888775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=1.8e-11  Score=93.42  Aligned_cols=217  Identities=10%  Similarity=-0.031  Sum_probs=144.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|.+||.+ ..... .........+.++++.+    ++.++++...++.|..||.. +..                  
T Consensus        40 ~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~v~~~d~~-g~~------------------   94 (300)
T 2qc5_A           40 ANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS----LGDIWFTENGANKIGKLSKK-GGF------------------   94 (300)
T ss_dssp             TTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE------------------
T ss_pred             CCeEEEECCC-CceEE-EECCCCCCcceeEEECC----CCCEEEEecCCCeEEEECCC-CCe------------------
Confidence            3567777766 32111 11222346788999999    88888887778889999977 311                  


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ....+......+.++++.+++.  ++++...++.|..++.+ ...  .......                      ....
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~--~~~~~~~----------------------~~~~  147 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTI--YEYDLPN----------------------KGSY  147 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCE--EEEECSS----------------------TTCC
T ss_pred             EEecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCE--EEccCCC----------------------CCCC
Confidence            0011112235688999999887  77777768889999864 211  0011110                      0012


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE-eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV-FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +..++++++++++++...++.|..+|. +++.... ...+...+.+++++++++.+++....+.|.+||. +++......
T Consensus       148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  225 (300)
T 2qc5_A          148 PAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI  225 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC
Confidence            578999999986666666789999998 5554432 2234456899999999988888777888999998 555443321


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                             ......+.+++++++|+++++...++.|..||
T Consensus       226 -------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          226 -------PTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             -------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             -------CCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence                   23345678999999999777776777887764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=3.9e-12  Score=101.45  Aligned_cols=230  Identities=11%  Similarity=0.004  Sum_probs=138.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ++.|+.||+++....   .+........ ++|+|    +++.|+++..++  .|.+++.......               
T Consensus       151 ~~~I~~id~~~g~~~---~~~~~~~~~~-ia~~~----~g~~l~~~d~~~~~~I~~~d~~~~~~~---------------  207 (409)
T 3hrp_A          151 DPRVRLISVDDNKVT---TVHPGFKGGK-PAVTK----DKQRVYSIGWEGTHTVYVYMKASGWAP---------------  207 (409)
T ss_dssp             TTEEEEEETTTTEEE---EEEETCCBCB-CEECT----TSSEEEEEBSSTTCEEEEEEGGGTTCE---------------
T ss_pred             CCcEEEEECCCCEEE---EeeccCCCCc-eeEec----CCCcEEEEecCCCceEEEEEcCCCcee---------------
Confidence            357888887764322   2221222333 89999    888888888766  6888887642110               


Q ss_pred             ccccccc-cCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFL-HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       ..+..+ ......+.+++++|++.  .|+.+..++.|+.||+....    ...+....        ...... +     
T Consensus       208 -~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~----~~~~~~~~--------~~g~~~-~-----  266 (409)
T 3hrp_A          208 -TRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQE----VTLIKQLE--------LSGSLG-T-----  266 (409)
T ss_dssp             -EEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCC----EEEEEECC--------CCSCCC-C-----
T ss_pred             -EEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCC----EEEEeccc--------ccCCCC-C-----
Confidence             000011 11335577899999544  55557778899999976431    11110000        000000 0     


Q ss_pred             CCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecCC---------------cceEEEEEcCCCcEEEEec-C
Q 023643          159 VPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS---------------DYLHCIVARNSTNQIVTGS-E  221 (279)
Q Consensus       159 ~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~i~~i~~~~~~~~l~~~~-~  221 (279)
                       .+...++|+|+ +.++++-..++.|+.|+....  +..+.++.               .....++++|+|+++++-+ .
T Consensus       267 -~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          267 -NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             -SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             -CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence             00128999995 555555667889999997643  33333322               3478999999999888888 8


Q ss_pred             CCeEEEEeCCCCceEEEecCCccc------cccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          222 DGTARIWDCKSGKCIKVIDPVKDK------QLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       222 d~~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ++.|+.|++.+++.....-.....      .....-.....+++++++.++++-..++.|+.+
T Consensus       344 ~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          344 GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            999999998777654332110000      000112457899999999888888888888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=2e-11  Score=100.92  Aligned_cols=229  Identities=12%  Similarity=0.065  Sum_probs=144.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCC--CCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIP--SCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~   79 (279)
                      +|.|.++|.++.+  .+..+.. ...+..+.|+|    +++++++++.|+.|.+||+.  +                   
T Consensus       176 ~~~V~viD~~t~~--v~~~i~~-g~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t-------------------  229 (567)
T 1qks_A          176 AGQIALIDGSTYE--IKTVLDT-GYAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKE-------------------  229 (567)
T ss_dssp             TTEEEEEETTTCC--EEEEEEC-SSCEEEEEECT----TSCEEEEEETTSEEEEEETTSSS-------------------
T ss_pred             CCeEEEEECCCCe--EEEEEeC-CCCccceEECC----CCCEEEEEcCCCeEEEEECCCCC-------------------
Confidence            6789999988764  3444442 33566899999    99999999999999999995  4                   


Q ss_pred             ccccccccCCccCeEEEEec----CCCCceEEEE-eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccc
Q 023643           80 IEPDGFLHGHDGPAYDVKFY----GGNEDALLLS-CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWG  154 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~----~~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (279)
                      .+.+..+.... ....++|+    |+++  ++++ ...+++|.++|..+.+....+. ..+....        .     .
T Consensus       230 ~~~v~~i~~G~-~P~~ia~s~~~~pDGk--~l~v~n~~~~~v~ViD~~t~~~~~~i~-~~~~~~~--------~-----~  292 (567)
T 1qks_A          230 PTTVAEIKIGS-EARSIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQS-TRGMTYD--------E-----Q  292 (567)
T ss_dssp             CCEEEEEECCS-EEEEEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEE-CCEECTT--------T-----C
T ss_pred             CcEeEEEecCC-CCceeEEccccCCCCC--EEEEEEccCCeEEEEECCCCcEEEEEe-ccccccc--------c-----c
Confidence            33344444333 35789999    6988  5554 4556999999976532221111 1000000        0     0


Q ss_pred             cCCCCCCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcEEE--EeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeC
Q 023643          155 ALSPVPENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRIKM--VFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDC  230 (279)
Q Consensus       155 ~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~  230 (279)
                      ...+...+..+..++++.. ++.....|.|.++|....+.+.  .+. ......++.|+|++++++++ ..++.|.++|+
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence            0001113567888887664 4555667999999987654322  222 33456788999999987655 46889999999


Q ss_pred             CCCceEEEecC-CccccccCcceeeeEEEEcCC-CCEEEEEc-CcceEEeCC
Q 023643          231 KSGKCIKVIDP-VKDKQLKGVISCVSCITLDAS-ESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       231 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~d~~i~~wd  279 (279)
                      .+++.+..+.. ..    ..|...-..+ ++|+ +..++++. .++.|.++|
T Consensus       372 ~t~kl~~~i~vgg~----~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid  418 (567)
T 1qks_A          372 KEGKLVAIEDTGGQ----TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIG  418 (567)
T ss_dssp             TTTEEEEEEECSSS----SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CCCcEEEEEeccCc----CCCCccceee-ECCCCCcEEEeCCCCCCeEEEec
Confidence            99998887753 21    2232211112 5787 45555553 467888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=1.3e-11  Score=94.94  Aligned_cols=204  Identities=15%  Similarity=0.170  Sum_probs=128.1

Q ss_pred             ccceEEEEECCCCCCCCCEEEE-------ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVI-------ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      -....+++|++    ++.++++       +..++.|.+|+..++.....               ......++...+.++.
T Consensus        17 ~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---------------~~~~~~~~~~~~~~i~   77 (314)
T 1pjx_A           17 IPGAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---------------CKPEVNGYGGIPAGCQ   77 (314)
T ss_dssp             CTTCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEE---------------ECCEETTEECCEEEEE
T ss_pred             CCCccCceECC----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE---------------EecccCCCCCCCceEE
Confidence            34567899998    8888888       67788999999876321100               0000112446688999


Q ss_pred             ecCC-CCceEEEEeeCCCcEEEeecCCCccCcceeee-ccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           98 FYGG-NEDALLLSCGDDGRICGWRWKEFTESKVPINL-QGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        98 ~~~~-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      +.++ +.  ++++ +..+.|.+||.+ ..   . ..+ ......                 .+...+.++++++++++++
T Consensus        78 ~~~~~g~--l~v~-~~~~~l~~~d~~-g~---~-~~~~~~~~~~-----------------~~~~~~~~i~~d~~g~l~v  132 (314)
T 1pjx_A           78 CDRDANQ--LFVA-DMRLGLLVVQTD-GT---F-EEIAKKDSEG-----------------RRMQGCNDCAFDYEGNLWI  132 (314)
T ss_dssp             ECSSSSE--EEEE-ETTTEEEEEETT-SC---E-EECCSBCTTS-----------------CBCBCCCEEEECTTSCEEE
T ss_pred             EecCCCc--EEEE-ECCCCEEEEeCC-CC---E-EEEEeccCCC-----------------ccccCCcCEEECCCCCEEE
Confidence            9998 64  4444 444578889865 21   1 111 000000                 0001267999999998777


Q ss_pred             EecCC---------------CeEEEEecCCCcEEEEeecCCcceEEEEEc----CCCcEE-EEecCCCeEEEEeCC-CCc
Q 023643          176 SAAGD---------------SCAYCWDVESSRIKMVFKGHSDYLHCIVAR----NSTNQI-VTGSEDGTARIWDCK-SGK  234 (279)
Q Consensus       176 ~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l-~~~~~d~~i~vwd~~-~~~  234 (279)
                      +...+               +.|..||.. ++..... .+......++++    |+++.+ ++...++.|.+||+. +++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~  210 (314)
T 1pjx_A          133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK  210 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred             EecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc
Confidence            66554               578888876 5544333 233456889999    998654 555678999999986 444


Q ss_pred             eEE--EecCCccccccCcc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CIK--VIDPVKDKQLKGVI-SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ...  .+..     +..+. .....++++++|+++++...++.|.+||
T Consensus       211 ~~~~~~~~~-----~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          211 IENKKVWGH-----IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEEE-----CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cccceEEEE-----CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence            211  1110     12333 4578899999999888887788888875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=9.6e-13  Score=113.03  Aligned_cols=197  Identities=7%  Similarity=-0.049  Sum_probs=124.7

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCC-----CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSD-----GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      |...+..++|||    ||++||.+..+     .+|++||+.+++                   .+.. ..+...+..++|
T Consensus       161 ~~~~~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~tg~-------------------~~~~-~~~~~~~~~~~w  216 (741)
T 1yr2_A          161 GATALDAWAASD----DGRLLAYSVQDGGSDWRTVKFVGVADGK-------------------PLAD-ELKWVKFSGLAW  216 (741)
T ss_dssp             --EEEEEEEECT----TSSEEEEEEEETTCSEEEEEEEETTTCC-------------------EEEE-EEEEEESCCCEE
T ss_pred             CCEEEEeEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCC-------------------CCCc-cCCCceeccEEE
Confidence            334688999999    99999887644     469999999842                   2111 111122357899


Q ss_pred             cCCCCceEEEEeeCCCc--------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           99 YGGNEDALLLSCGDDGR--------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~--------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      +|+ +  .|+.++.++.              |++|++.+..... ...+....           +         ...+..
T Consensus       217 spD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~~~-----------~---------~~~~~~  272 (741)
T 1yr2_A          217 LGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFATPE-----------L---------PKRGHG  272 (741)
T ss_dssp             STT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEECCTT-----------C---------TTCEEE
T ss_pred             ECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEeccCC-----------C---------CeEEEE
Confidence            999 7  7777766554              7788875432111 11111100           0         002578


Q ss_pred             EEEcCCCCeEEEecCC-----CeEEEEecCCC--cEEEEeecCCcceEEEEEcCCCcEEEEecC----CCeEEEEeCCCC
Q 023643          165 IAVDPQGGAIFSAAGD-----SCAYCWDVESS--RIKMVFKGHSDYLHCIVARNSTNQIVTGSE----DGTARIWDCKSG  233 (279)
Q Consensus       165 ~~~~~~~~~l~~~~~d-----~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~  233 (279)
                      +.|+|+|++|+..+.+     ..|++||+.++  +....+..+...+.... +|+++.|+..+.    ++.|.+||+.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            8999999988876644     38999999876  41444555555555543 488888777664    455999999875


Q ss_pred             --ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          234 --KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       234 --~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                        +....+        ..+...+..++++ ++.++++...|+..++|
T Consensus       352 ~~~~~~l~--------~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          352 TPRFDTVV--------PESKDNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             SCEEEEEE--------CCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             ccccEEEe--------cCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence              333333        2333456777887 56778888888887776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=1.4e-11  Score=96.86  Aligned_cols=244  Identities=11%  Similarity=-0.027  Sum_probs=137.1

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCcc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNSK   73 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~   73 (279)
                      .|.++|.++.+  .+..+.....+  .++++|    |+++++++.          .++.|.+||..+.+....+..    
T Consensus        48 ~v~v~D~~t~~--~~~~i~~g~~p--~i~~sp----Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~----  115 (373)
T 2mad_H           48 QQWVLDAGSGS--ILGHVNGGFLP--NPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL----  115 (373)
T ss_pred             EEEEEECCCCe--EEEEecCCCCC--CeEECC----CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC----
Confidence            67888887764  24444433333  999999    899988875          367899999987322111100    


Q ss_pred             cceeeeccccccccCCccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeeccC------cccceEEee
Q 023643           74 VQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQGN------HVKPVLDLV  145 (279)
Q Consensus        74 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~  145 (279)
                            ....+ .. +......+.|+|+++  +|+.+..  ++.|.++| .+.+.........+.      .........
T Consensus       116 ------~~~~~-~~-~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~  184 (373)
T 2mad_H          116 ------PDAPR-FD-VGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             ------CCccc-cc-cCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEc
Confidence                  00000 00 112345789999998  7877764  57899999 764322110111000      000000000


Q ss_pred             cCCCCCcccc-------CC-----CCCC--ceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEeec----------
Q 023643          146 NHQHKGPWGA-------LS-----PVPE--NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVFKG----------  199 (279)
Q Consensus       146 ~~~~~~~~~~-------~~-----~~~~--i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~----------  199 (279)
                      .......+..       ..     ....  .....+.+++..++..+..+.+.+.|+....  .+..+..          
T Consensus       185 ~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence            0000000000       00     0000  0112334444444444467788889986542  2222221          


Q ss_pred             CCcceEEEEEcCCCcEEEEecC----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEE
Q 023643          200 HSDYLHCIVARNSTNQIVTGSE----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVR  268 (279)
Q Consensus       200 ~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  268 (279)
                      .......++++|+++.+..+..          .+.|.++|+.+++.+..+..       +  ....+++|+|||+ ++++
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g--~~p~~i~~s~Dg~~~l~v  335 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------G--HDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------C--CCcCeEEECCCCCeEEEE
Confidence            1122445788999887776543          46799999999999998842       2  1468999999999 7777


Q ss_pred             Ec-CcceEEeCC
Q 023643          269 VR-ATNYVILFS  279 (279)
Q Consensus       269 ~~-~d~~i~~wd  279 (279)
                      +. .++.|.+||
T Consensus       336 ~~~~~~~V~ViD  347 (373)
T 2mad_H          336 LSAGTEVLHIYD  347 (373)
T ss_pred             EcCCCCeEEEEE
Confidence            76 589999886

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.52  E-value=4.4e-13  Score=104.90  Aligned_cols=150  Identities=8%  Similarity=0.068  Sum_probs=108.9

Q ss_pred             CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCC
Q 023643           92 PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQG  171 (279)
Q Consensus        92 ~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  171 (279)
                      +++.+++++...  ++++|+.+ .+.+|+++.......  .-... ..+...            ..... |+.++|  ++
T Consensus        39 ~~nlLais~~~g--ll~a~~~~-~l~v~~~~~l~~~~~--~~~~~-~~~~~~------------~~lp~-V~~l~f--d~   97 (388)
T 1xip_A           39 SLQNLDISNSKS--LFVAASGS-KAVVGELQLLRDHIT--SDSTP-LTFKWE------------KEIPD-VIFVCF--HG   97 (388)
T ss_dssp             CCBCEEEETTTT--EEEEEETT-EEEEEEHHHHHHHHH--SSSCC-CCCSEE------------EECTT-EEEEEE--ET
T ss_pred             cccEEEEcCCCC--EEEEeCCC-EEEEEEhhHhhhhhc--ccccc-ccceEE------------eeCCC-eeEEEE--CC
Confidence            688999999988  89999987 566699764321000  00000 000000            00112 789999  88


Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcc
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI  251 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  251 (279)
                      .+|+++ .++.|++||+++.........|...+.++.+.+.  .+++++.||.|.+||+.+++... +           .
T Consensus        98 ~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~-----------~  162 (388)
T 1xip_A           98 DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L-----------A  162 (388)
T ss_dssp             TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E-----------E
T ss_pred             CEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c-----------c
Confidence            999998 7899999999887766667777888888877654  38888999999999999887643 2           2


Q ss_pred             eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          252 SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       252 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..|++++|+|+|  ++.|..||++++|+
T Consensus       163 ~~Vs~v~WSpkG--~~vg~~dg~i~~~~  188 (388)
T 1xip_A          163 QNVTSFDVTNSQ--LAVLLKDRSFQSFA  188 (388)
T ss_dssp             ESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred             CCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence            479999999999  78888999999873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.51  E-value=2.2e-11  Score=94.23  Aligned_cols=204  Identities=12%  Similarity=0.058  Sum_probs=126.9

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      +.|..||.++...   ..+. ....+.+++|+|    +++++++. .+ .|.+||..++...                 .
T Consensus        71 ~~i~~~d~~~~~~---~~~~-~~~~v~~i~~~~----dg~l~v~~-~~-gl~~~d~~~g~~~-----------------~  123 (326)
T 2ghs_A           71 RELHELHLASGRK---TVHA-LPFMGSALAKIS----DSKQLIAS-DD-GLFLRDTATGVLT-----------------L  123 (326)
T ss_dssp             TEEEEEETTTTEE---EEEE-CSSCEEEEEEEE----TTEEEEEE-TT-EEEEEETTTCCEE-----------------E
T ss_pred             CEEEEEECCCCcE---EEEE-CCCcceEEEEeC----CCeEEEEE-CC-CEEEEECCCCcEE-----------------E
Confidence            5667777665432   1222 346799999999    88877664 44 4899998764211                 0


Q ss_pred             ccccc--CCccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           83 DGFLH--GHDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        83 ~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      +....  .....+..+.+.|++.  ++++...+    +...||.+++.   .. ..+... .                  
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~~g---~~-~~~~~~-~------------------  178 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKG---KV-TKLFAD-I------------------  178 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETT---EE-EEEEEE-E------------------
T ss_pred             EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEeCC---cE-EEeeCC-C------------------
Confidence            10111  1124588999999997  66554321    23445544311   11 111000 0                  


Q ss_pred             CCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecC--CC-c-----EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643          157 SPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVE--SS-R-----IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI  227 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~-~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v  227 (279)
                         .....++|+|+++.++.+ +.++.|.+||+.  ++ +     ....+......+..++++++|++.++...++.|.+
T Consensus       179 ---~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          179 ---SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             ---SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             ---cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence               014688999999876554 557899999986  55 3     22233334456788999999988887767789999


Q ss_pred             EeCCCCceEEEecCCccccccCcceeeeEEEEc-CCCCEEEEEc
Q 023643          228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVRVR  270 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  270 (279)
                      ||. +++.+..+.        .+...+++++|+ |++..|+.++
T Consensus       256 ~d~-~g~~~~~i~--------~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          256 YDT-DGNHIARYE--------VPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ECT-TCCEEEEEE--------CSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ECC-CCCEEEEEE--------CCCCCcEEEEEecCCCCEEEEEe
Confidence            998 677777763        334568999998 8877665443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=6.9e-12  Score=103.65  Aligned_cols=187  Identities=16%  Similarity=0.093  Sum_probs=130.9

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      .+.++++...+++|.++|..+                   ++.+..+... ..+..+.|+|+++  ++++++.|+.|.+|
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t-------------------~~v~~~i~~g-~~p~~v~~SpDGr--~lyv~~~dg~V~vi  223 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGST-------------------YEIKTVLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMI  223 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTT-------------------CCEEEEEECS-SCEEEEEECTTSC--EEEEEETTSEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCC-------------------CeEEEEEeCC-CCccceEECCCCC--EEEEEcCCCeEEEE
Confidence            445677788899999999998                   4444455432 3467899999998  89999999999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc----CCCCeEEEecC-CCeEEEEecCCCcEE
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD----PQGGAIFSAAG-DSCAYCWDVESSRIK  194 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~  194 (279)
                      |+... .......+....                       ....++|+    |+|++++++.. ++.|.++|..+.+++
T Consensus       224 D~~~~-t~~~v~~i~~G~-----------------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          224 DLWMK-EPTTVAEIKIGS-----------------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             ETTSS-SCCEEEEEECCS-----------------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             ECCCC-CCcEeEEEecCC-----------------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence            98411 112222221111                       13688999    69998887665 589999999999988


Q ss_pred             EEeecC-----------CcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          195 MVFKGH-----------SDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       195 ~~~~~~-----------~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ..+...           ...+..+..++++ .+++....+|.|.++|....+.+....       .........+.|+|+
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-------i~~~~~~~d~~~~pd  352 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-------ISAERFLHDGGLDGS  352 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-------EECCSSEEEEEECTT
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-------eeccccccCceECCC
Confidence            876521           1257788888874 456667788999999988765333221       111224567899999


Q ss_pred             CCEEEEEc-CcceEEeCC
Q 023643          263 ESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       263 ~~~l~~~~-~d~~i~~wd  279 (279)
                      +++++++. .++.|.++|
T Consensus       353 gr~~~va~~~sn~V~ViD  370 (567)
T 1qks_A          353 HRYFITAANARNKLVVID  370 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEE
Confidence            99887654 577788775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.50  E-value=9.4e-12  Score=99.24  Aligned_cols=204  Identities=9%  Similarity=0.086  Sum_probs=129.3

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      .....++|+|    +++++++...++.|++||..+.                   ........... .. ++|+|++.  
T Consensus       131 ~~P~~la~d~----~g~lyv~d~~~~~I~~id~~~g-------------------~~~~~~~~~~~-~~-ia~~~~g~--  183 (409)
T 3hrp_A          131 KYMWGIAAVG----NNTVLAYQRDDPRVRLISVDDN-------------------KVTTVHPGFKG-GK-PAVTKDKQ--  183 (409)
T ss_dssp             CCEEEEEECS----TTEEEEEETTTTEEEEEETTTT-------------------EEEEEEETCCB-CB-CEECTTSS--
T ss_pred             CCceEEEEeC----CCCEEEEecCCCcEEEEECCCC-------------------EEEEeeccCCC-Cc-eeEecCCC--
Confidence            4678899999    8888888888899999999863                   22222222222 23 89999998  


Q ss_pred             EEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          106 LLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       106 ~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                      .|+++..++  .|.+++......   .... +       .+...          ....+.+++++|++..|+++..++.|
T Consensus       184 ~l~~~d~~~~~~I~~~d~~~~~~---~~~~-g-------~~~~~----------~~~~p~~iav~p~~g~lyv~d~~~~I  242 (409)
T 3hrp_A          184 RVYSIGWEGTHTVYVYMKASGWA---PTRI-G-------QLGST----------FSGKIGAVALDETEEWLYFVDSNKNF  242 (409)
T ss_dssp             EEEEEBSSTTCEEEEEEGGGTTC---EEEE-E-------ECCTT----------SCSCCCBCEECTTSSEEEEECTTCEE
T ss_pred             cEEEEecCCCceEEEEEcCCCce---eEEe-e-------eccch----------hcCCcEEEEEeCCCCeEEEEECCCcE
Confidence            888887766  677777543211   1111 0       00000          00125789999966666667778999


Q ss_pred             EEEecCCCcEEEE----eecCCcce-E-EEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCCc-cccc------cC
Q 023643          184 YCWDVESSRIKMV----FKGHSDYL-H-CIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPVK-DKQL------KG  249 (279)
Q Consensus       184 ~i~d~~~~~~~~~----~~~~~~~i-~-~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~------~~  249 (279)
                      +.||..++.....    ..++...- . .++|+| ++.++++-..++.|+.|+....  ...+.... ...+      ..
T Consensus       243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~  320 (409)
T 3hrp_A          243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEA  320 (409)
T ss_dssp             EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGC
T ss_pred             EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCccccc
Confidence            9999987754332    22222222 3 899999 4777778788999999997543  22221110 0000      01


Q ss_pred             cceeeeEEEEcCCCCEEEEEc-CcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      .-.....++++|+|+++++-+ .++.|+.||
T Consensus       321 ~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          321 LFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             BCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            123468899999999888887 788888774

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=1.3e-10  Score=88.65  Aligned_cols=197  Identities=9%  Similarity=-0.041  Sum_probs=137.4

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ....+.++++.+    ++.+.++...++.|.+|+.. ...                 .. ..+..+...+.++++.+++.
T Consensus        18 ~~~~p~~i~~d~----~g~l~v~~~~~~~v~~~~~~-~~~-----------------~~-~~~~~~~~~~~~i~~~~~g~   74 (300)
T 2qc5_A           18 PDSGPYGITSSE----DGKVWFTQHKANKISSLDQS-GRI-----------------KE-FEVPTPDAKVMCLIVSSLGD   74 (300)
T ss_dssp             TTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE-----------------EE-EECSSTTCCEEEEEECTTSC
T ss_pred             CCCCcceeeECC----CCCEEEEcCCCCeEEEECCC-Cce-----------------EE-EECCCCCCcceeEEECCCCC
Confidence            346788999999    89988888788999999987 321                 00 11122335688999999887


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        ++++...++.|..+|.. ...  ........                      ...+..+++++++.++++...++.|
T Consensus        75 --l~v~~~~~~~v~~~d~~-g~~--~~~~~~~~----------------------~~~~~~i~~~~~g~l~v~~~~~~~i  127 (300)
T 2qc5_A           75 --IWFTENGANKIGKLSKK-GGF--TEYPLPQP----------------------DSGPYGITEGLNGDIWFTQLNGDRI  127 (300)
T ss_dssp             --EEEEETTTTEEEEECTT-SCE--EEEECSST----------------------TCCEEEEEECSTTCEEEEETTTTEE
T ss_pred             --EEEEecCCCeEEEECCC-CCe--EEecCCCC----------------------CCCCccceECCCCCEEEEccCCCeE
Confidence              77777668889999864 211  11111100                      0125789999999877777768899


Q ss_pred             EEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          184 YCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       184 ~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ..+|.. ++... .+......+.++++.++++.+++...++.|..+|. +++... +..      ..+...+.+++++++
T Consensus       128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          128 GKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL------PTNAAAPVGITSGND  198 (300)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC------SSTTCCEEEEEECTT
T ss_pred             EEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC------CCCCCCcceEEECCC
Confidence            999987 65543 23334467899999999998887777889999998 565543 321      233356789999999


Q ss_pred             CCEEEEEcCcceEEeCC
Q 023643          263 ESWLVRVRATNYVILFS  279 (279)
Q Consensus       263 ~~~l~~~~~d~~i~~wd  279 (279)
                      +.++++....+.|.+||
T Consensus       199 g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          199 GALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             SSEEEEETTTTEEEEEC
T ss_pred             CCEEEEccCCCEEEEEc
Confidence            98888777777787765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=3.8e-12  Score=109.32  Aligned_cols=219  Identities=11%  Similarity=0.042  Sum_probs=134.5

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCc--------------EEEEeCCCCCccccccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGS--------------ITSYSIPSCISKLPLGL   69 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~--------------i~iw~~~~~~~~~~~~~   69 (279)
                      .|++||++++..  +.. ..+...+..++|+|    | +.|+.++.++.              |++|++.+.....    
T Consensus       190 ~i~v~dl~tg~~--~~~-~~~~~~~~~~~wsp----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----  257 (741)
T 1yr2_A          190 TVKFVGVADGKP--LAD-ELKWVKFSGLAWLG----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD----  257 (741)
T ss_dssp             EEEEEETTTCCE--EEE-EEEEEESCCCEEST----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----
T ss_pred             EEEEEECCCCCC--CCc-cCCCceeccEEEEC----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----
Confidence            589999888753  221 22222346789999    8 88888776654              8888887632100    


Q ss_pred             CCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCC-----cEEEeecCCCccCcceeeeccCcccceEEe
Q 023643           70 SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDG-----RICGWRWKEFTESKVPINLQGNHVKPVLDL  144 (279)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  144 (279)
                                 ..+.....+...+..+.|+|+++  +|+..+.++     .|++||+...... ....+.....      
T Consensus       258 -----------~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~------  317 (741)
T 1yr2_A          258 -----------QPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVARVTNGKIG-PVTALIPDLK------  317 (741)
T ss_dssp             -----------EEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEEEEETTEEC-CCEEEECSSS------
T ss_pred             -----------EEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEEECCCCCCc-ccEEecCCCC------
Confidence                       01111223334588999999998  777666543     7899997542101 0111111110      


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEEEecCCC--cEEEEeecCCcceEEEEEcCCCcEEEE
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYCWDVESS--RIKMVFKGHSDYLHCIVARNSTNQIVT  218 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~  218 (279)
                                      .+... ++|++..|+..+.    ++.|.+||+.++  +....+..+...+..++++ ++.++++
T Consensus       318 ----------------~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~  379 (741)
T 1yr2_A          318 ----------------AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS  379 (741)
T ss_dssp             ----------------SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred             ----------------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence                            02223 3478888877765    456999999874  3444455555567777877 5677888


Q ss_pred             ecCCCeEEEEeCC-CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE----cCcceEEeCC
Q 023643          219 GSEDGTARIWDCK-SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV----RATNYVILFS  279 (279)
Q Consensus       219 ~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~~wd  279 (279)
                      ...|+..+||.+. +++....+..       .....+..++++|++..|+..    ...+.|++||
T Consensus       380 ~~~dg~~~l~~~~~~g~~~~~l~~-------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  438 (741)
T 1yr2_A          380 YIHDAKSQVLAFDLDGKPAGAVSL-------PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD  438 (741)
T ss_dssp             EEETTEEEEEEEETTSCEEEECBC-------SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred             EEECCEEEEEEEeCCCCceeeccC-------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence            8889987777554 4555555531       134568889999998766532    2346777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=3.4e-11  Score=92.31  Aligned_cols=210  Identities=11%  Similarity=0.041  Sum_probs=130.1

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|..|+.++.    ...+..+...+..+++++    +++++++...++.|.+|+... ....                
T Consensus        66 ~~~i~~~~~~g~----~~~~~~~~~~~~gl~~d~----dG~l~v~~~~~~~v~~~~~~g-~~~~----------------  120 (305)
T 3dr2_A           66 GRRVLGWREDGT----VDVLLDATAFTNGNAVDA----QQRLVHCEHGRRAITRSDADG-QAHL----------------  120 (305)
T ss_dssp             TTEEEEEETTSC----EEEEEESCSCEEEEEECT----TSCEEEEETTTTEEEEECTTS-CEEE----------------
T ss_pred             CCEEEEEeCCCC----EEEEeCCCCccceeeECC----CCCEEEEECCCCEEEEECCCC-CEEE----------------
Confidence            355667766432    233444567789999999    899877766778899999752 1100                


Q ss_pred             ccccccC-CccCeEEEEecCCCCceEEEE----eeC-------------CCcEEEeecCCCccCcceeeeccCcccceEE
Q 023643           82 PDGFLHG-HDGPAYDVKFYGGNEDALLLS----CGD-------------DGRICGWRWKEFTESKVPINLQGNHVKPVLD  143 (279)
Q Consensus        82 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  143 (279)
                      ......+ ....+..+.+.|++.  +++|    +..             .+.|..++..+....   ... . .      
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---~~~-~-~------  187 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---RMA-D-L------  187 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE---EEE-E-E------
T ss_pred             EEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE---EEe-c-C------
Confidence            0001111 113467799999987  7775    332             234555554322110   000 0 0      


Q ss_pred             eecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC------CeEEEEecCCCcEE--EEe-ecCCcceEEEEEcCCCc
Q 023643          144 LVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD------SCAYCWDVESSRIK--MVF-KGHSDYLHCIVARNSTN  214 (279)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~--~~~-~~~~~~i~~i~~~~~~~  214 (279)
                                      ...+.++|+|+++.|+++...      +.|.+||+..+...  ..+ .........++++++|+
T Consensus       188 ----------------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          188 ----------------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             ----------------SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             ----------------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence                            014689999999988777655      78999998765411  111 11234456788999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          215 QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       215 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      +.++ ..+ .|.+|+. .++.+..+..        +. .+..++|+|+++.|..++.++..++
T Consensus       252 lwv~-~~~-gv~~~~~-~g~~~~~~~~--------~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          252 LWSS-SGT-GVCVFDS-DGQLLGHIPT--------PG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEEC-CSS-EEEEECT-TSCEEEEEEC--------SS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEEe-cCC-cEEEECC-CCCEEEEEEC--------CC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            5544 444 4999997 5777777732        22 4788999999988888877776554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=2.3e-11  Score=94.88  Aligned_cols=239  Identities=11%  Similarity=0.031  Sum_probs=142.0

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      ++.|.+.|.++.+  .+..+..-..+  .++++|    +++++++++          .++.|.+||..+.          
T Consensus        58 ~~~V~ViD~~t~~--v~~~I~vG~~P--~va~sp----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~----------  119 (386)
T 3sjl_D           58 VTQQFVIDGEAGR--VIGMIDGGFLP--NPVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTL----------  119 (386)
T ss_dssp             SEEEEEEETTTTE--EEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC----------
T ss_pred             CCEEEEEECCCCe--EEEEEECCCCC--cEEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCC----------
Confidence            5678888887764  35555544444  499999    899887765          3678999999984          


Q ss_pred             cccceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeec-----cCc
Q 023643           72 SKVQQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQ-----GNH  137 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~-----~~~  137 (279)
                               +.+..+.-.       ......+.|+|+++  +++.+..  ++.|.++|+.+.+....+....     ...
T Consensus       120 ---------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g  188 (386)
T 3sjl_D          120 ---------LPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  188 (386)
T ss_dssp             ---------CEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             ---------eEEEEEECCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence                     333333210       12345689999998  7766653  6899999987653222211000     000


Q ss_pred             ccceEE---------eecCCCCCcc----ccCCCC-CCc-eeEEEc-CCCCeEEEecCCCeEEEEecCCCc--EEEEee-
Q 023643          138 VKPVLD---------LVNHQHKGPW----GALSPV-PEN-NAIAVD-PQGGAIFSAAGDSCAYCWDVESSR--IKMVFK-  198 (279)
Q Consensus       138 ~~~~~~---------~~~~~~~~~~----~~~~~~-~~i-~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~-  198 (279)
                      ...+..         +.........    ..+... ..+ ....|. +++++++ .+.+|.|++.|+.+..  ....+. 
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~  267 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA  267 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence            000111         1111100000    011110 111 124554 5665555 5558999999997654  222221 


Q ss_pred             --------c-CCcceEEEEEcCCCcEEEEecC----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          199 --------G-HSDYLHCIVARNSTNQIVTGSE----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       199 --------~-~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                              + ..+....++++++++.++....          .+.|.++|+.+++.+..+..       +  ..+.++++
T Consensus       268 ~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-------g--~~~~~lav  338 (386)
T 3sjl_D          268 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-------G--HEIDSINV  338 (386)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------E--EEECEEEE
T ss_pred             cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-------C--CCcceEEE
Confidence                    0 1123345777898877766532          35799999999999999842       2  36789999


Q ss_pred             cCCCC-EEEEE-cCcceEEeCC
Q 023643          260 DASES-WLVRV-RATNYVILFS  279 (279)
Q Consensus       260 ~~~~~-~l~~~-~~d~~i~~wd  279 (279)
                      ++|++ +|+++ ..++.|.++|
T Consensus       339 s~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          339 SQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCCCeEEEEEcCCCCeEEEEE
Confidence            99996 66664 5588898876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=1.1e-10  Score=89.15  Aligned_cols=198  Identities=15%  Similarity=0.172  Sum_probs=124.3

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      .--.+..|+|.   ++.++++...++.|..||..+..                   . ..+ .....+.++++.|++.  
T Consensus        13 ~~~Egp~w~~~---~~~l~~~d~~~~~i~~~d~~~~~-------------------~-~~~-~~~~~~~~i~~~~dG~--   66 (297)
T 3g4e_A           13 RCGESPVWEEV---SNSLLFVDIPAKKVCRWDSFTKQ-------------------V-QRV-TMDAPVSSVALRQSGG--   66 (297)
T ss_dssp             SBEEEEEEETT---TTEEEEEETTTTEEEEEETTTCC-------------------E-EEE-ECSSCEEEEEEBTTSS--
T ss_pred             ccccCCeEECC---CCEEEEEECCCCEEEEEECCCCc-------------------E-EEE-eCCCceEEEEECCCCC--
Confidence            34557889983   56677777788999999998631                   1 112 1345789999999997  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC------
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG------  179 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------  179 (279)
                      ++++.  ++.|.+||.++... ..........                    +...++.++++|+++++++...      
T Consensus        67 l~v~~--~~~l~~~d~~~g~~-~~~~~~~~~~--------------------~~~~~~di~~d~dG~l~~~~~~~~~~~~  123 (297)
T 3g4e_A           67 YVATI--GTKFCALNWKEQSA-VVLATVDNDK--------------------KNNRFNDGKVDPAGRYFAGTMAEETAPA  123 (297)
T ss_dssp             EEEEE--TTEEEEEETTTTEE-EEEEECCTTC--------------------SSEEEEEEEECTTSCEEEEEEECCSBTT
T ss_pred             EEEEE--CCeEEEEECCCCcE-EEEEecCCCC--------------------CCCCCCCEEECCCCCEEEecCCcccccc
Confidence            55553  56799999754211 1111100000                    0012578999999986664421      


Q ss_pred             -----CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeC--CCCceE--EEecCCccccccC
Q 023643          180 -----DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDC--KSGKCI--KVIDPVKDKQLKG  249 (279)
Q Consensus       180 -----d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~--~~~~~~--~~~~~~~~~~~~~  249 (279)
                           .+.|..+|.. ++... +..+......++|+|+++.| ++.+.++.|.+||+  .++...  ..+..     +..
T Consensus       124 ~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~-----~~~  196 (297)
T 3g4e_A          124 VLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK-----LEK  196 (297)
T ss_dssp             BCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE-----CCG
T ss_pred             cccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE-----CCC
Confidence                 2345555543 33333 33334456889999999865 56667899999987  455432  11210     022


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +......++++++|++.++....+.|..||
T Consensus       197 ~~~~p~g~~~d~~G~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGKLWVACYNGGRVIRLD  226 (297)
T ss_dssp             GGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred             CCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence            335678899999999888877778888875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=1.5e-11  Score=97.53  Aligned_cols=237  Identities=10%  Similarity=0.003  Sum_probs=145.4

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      +.|.++|.++.+  .+..+..-..+  .++++|    |+++|+++.          .++.|.++|..+.+          
T Consensus        99 ~~VsVID~~t~~--vv~~I~vG~~P--gia~Sp----Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~----------  160 (426)
T 3c75_H           99 TQQFVIDGSTGR--ILGMTDGGFLP--HPVAAE----DGSFFAQASTVFERIARGKRTDYVEVFDPVTFL----------  160 (426)
T ss_dssp             EEEEEEETTTTE--EEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----------
T ss_pred             CeEEEEECCCCE--EEEEEECCCCC--ceEECC----CCCEEEEEeccccccccCCCCCEEEEEECCCCc----------
Confidence            688899988764  35555544455  899999    898888776          36789999999843          


Q ss_pred             ccceeeeccccccccC-------CccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeeccC------c
Q 023643           73 KVQQLLGIEPDGFLHG-------HDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQGN------H  137 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~------~  137 (279)
                               .+..+.-       .......+.|+|+++  +++.+..  ++.|.+.|+.+.+....+.. .+.      .
T Consensus       161 ---------vv~~I~v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~v-~g~~~~~p~g  228 (426)
T 3c75_H          161 ---------PIADIELPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLDV-PDCYHIFPAS  228 (426)
T ss_dssp             ---------EEEEEEETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEEC-CSEEEEEEEE
T ss_pred             ---------EEEEEECCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEEc-CCceeeccCC
Confidence                     2222210       012345678999998  7777653  68899999876432221111 000      0


Q ss_pred             ccceEEeecCC--------CCC-------ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE--Eeec-
Q 023643          138 VKPVLDLVNHQ--------HKG-------PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM--VFKG-  199 (279)
Q Consensus       138 ~~~~~~~~~~~--------~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~-  199 (279)
                      ...+..+...+        ...       .+... ...-...+.+.+++..++.....+.+.+.|........  .+.. 
T Consensus       229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence            00001110000        000       00000 00011235678888877777778999999987543221  1110 


Q ss_pred             ---------CCcceEEEEEcCCCcEEEEecC----------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          200 ---------HSDYLHCIVARNSTNQIVTGSE----------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       200 ---------~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                               .......++++|+++.++....          ++.|.++|+.+.+.+.++..       +  ....+++|+
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-------g--~~P~gia~s  378 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-------G--HEIDSINVS  378 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-------E--EEECEEEEC
T ss_pred             cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-------C--CCcCeEEEc
Confidence                     0111223789999877666532          45799999999999999842       1  247889999


Q ss_pred             CCCC-EEEEEc-CcceEEeCC
Q 023643          261 ASES-WLVRVR-ATNYVILFS  279 (279)
Q Consensus       261 ~~~~-~l~~~~-~d~~i~~wd  279 (279)
                      ||++ ++++.. .++.|.++|
T Consensus       379 pDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          379 QDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             CSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEEcCCCCeEEEEE
Confidence            9998 888877 589998876

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.43  E-value=4e-11  Score=91.96  Aligned_cols=203  Identities=9%  Similarity=-0.001  Sum_probs=126.7

Q ss_pred             eeeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      ..+...........|+|    +++ ++++...++.|..|+...                    + ...+..+...+..+.
T Consensus        38 ~~l~~~~~~~egp~~~~----~g~~l~~~d~~~~~i~~~~~~g--------------------~-~~~~~~~~~~~~gl~   92 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWE----AQRTLVWSDLVGRRVLGWREDG--------------------T-VDVLLDATAFTNGNA   92 (305)
T ss_dssp             EEEECCCSSEEEEEEEG----GGTEEEEEETTTTEEEEEETTS--------------------C-EEEEEESCSCEEEEE
T ss_pred             EEEecCCcCccCCeEeC----CCCEEEEEECCCCEEEEEeCCC--------------------C-EEEEeCCCCccceee
Confidence            33444445677899999    787 777888889999998742                    1 123333556689999


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE-
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS-  176 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-  176 (279)
                      +.+++.  ++++...++.|.+|+.+ ..    ...+......        .         ....++.++++|+|+++++ 
T Consensus        93 ~d~dG~--l~v~~~~~~~v~~~~~~-g~----~~~~~~~~~~--------~---------~~~~~~~i~~d~dG~l~~td  148 (305)
T 3dr2_A           93 VDAQQR--LVHCEHGRRAITRSDAD-GQ----AHLLVGRYAG--------K---------RLNSPNDLIVARDGAIWFTD  148 (305)
T ss_dssp             ECTTSC--EEEEETTTTEEEEECTT-SC----EEEEECEETT--------E---------ECSCCCCEEECTTSCEEEEC
T ss_pred             ECCCCC--EEEEECCCCEEEEECCC-CC----EEEEEeccCC--------C---------ccCCCCCEEECCCCCEEEeC
Confidence            999987  66666666889999864 21    1111100000        0         0012578999999987776 


Q ss_pred             ---ecC-------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC------CeEEEEeCCCCc
Q 023643          177 ---AAG-------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED------GTARIWDCKSGK  234 (279)
Q Consensus       177 ---~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~  234 (279)
                         |..             .+.|..+|..+++.....  .......++|+|+++.|+.+...      +.|.+|++..+.
T Consensus       149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          149 PPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             CSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             cCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence               432             356888888777654433  33456789999999977666554      789999987654


Q ss_pred             eEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          235 CIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       +.......    .........++++++|++.++. .++ |.+|+
T Consensus       227 -l~~~~~~~----~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~  264 (305)
T 3dr2_A          227 -LHDRRHFA----SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFD  264 (305)
T ss_dssp             -EEEEEEEE----CCSSSCCCSEEECTTSCEEECC-SSE-EEEEC
T ss_pred             -ccCCeEEE----ECCCCCCCeEEECCCCCEEEec-CCc-EEEEC
Confidence             21110000    1112234568899999855443 444 66664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.36  E-value=1.1e-13  Score=109.03  Aligned_cols=179  Identities=13%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ++.++++++.||.|+.||..++                   +.+-.+..  +++.+..+.+++.  .+++++.||.|+.|
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG-------------------~~~W~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~   64 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG-------------------SIKWTLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTL   64 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC-------------------CEEEEEEC--CCSCCCC-----C--CEEECTTTCCEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCC-------------------CEEEEecC--CCceecceEcCCC--EEEEeCCCCEEEEE
Confidence            5788999999999999999984                   33333332  3344444455665  77888899999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      |.++.+..   ..........+       .             .+..+. .+..+++++.++.|+.||..+|+.+..+..
T Consensus        65 d~~tG~~~---w~~~~~~~~~~-------~-------------~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~  120 (369)
T 2hz6_A           65 GSKNNEGL---TKLPFTIPELV-------Q-------------ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS  120 (369)
T ss_dssp             -----CCS---EECSCCHHHHH-------T-------------TCSCC------CCCCEEEEEEEEECCC----------
T ss_pred             ECCCCcee---eeeeccCcccc-------c-------------cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC
Confidence            98654221   11111100000       0             000111 244677888899999999999999888765


Q ss_pred             CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC---CEEEEEcCcceEE
Q 023643          200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE---SWLVRVRATNYVI  276 (279)
Q Consensus       200 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~  276 (279)
                      +.    ...++|++..+++++.|+.|+.||.++|+.+..+..        +  .....+++++.   ..+++++.||.+.
T Consensus       121 ~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--------~--~~~~~~~~~~~~~~~~v~~~~~dg~v~  186 (369)
T 2hz6_A          121 AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY--------F--DYAASLPEDDVDYKMSHFVSNGDGLVV  186 (369)
T ss_dssp             ----------------EEEEEEEEEEECCCSSSSSCCCEEEE--------E--EECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred             CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec--------c--cccCccccCCccccceEEEECCCCEEE
Confidence            43    234567888999999999999999999988766531        1  11223344432   4567778888888


Q ss_pred             eCC
Q 023643          277 LFS  279 (279)
Q Consensus       277 ~wd  279 (279)
                      .||
T Consensus       187 a~d  189 (369)
T 2hz6_A          187 TVD  189 (369)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.35  E-value=8.6e-10  Score=85.32  Aligned_cols=195  Identities=10%  Similarity=0.026  Sum_probs=120.1

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      ..+.+|+|.   ++.++++...++.|..|+..++.                   . ..+. ....+.++.|.|++.  ++
T Consensus        51 ~egp~~~~~---~~~l~~~d~~~~~i~~~d~~~~~-------------------~-~~~~-~~~~v~~i~~~~dg~--l~  104 (326)
T 2ghs_A           51 GEGPTFDPA---SGTAWWFNILERELHELHLASGR-------------------K-TVHA-LPFMGSALAKISDSK--QL  104 (326)
T ss_dssp             EEEEEEETT---TTEEEEEEGGGTEEEEEETTTTE-------------------E-EEEE-CSSCEEEEEEEETTE--EE
T ss_pred             CcCCeEeCC---CCEEEEEECCCCEEEEEECCCCc-------------------E-EEEE-CCCcceEEEEeCCCe--EE
Confidence            467889992   35667777788999999988631                   1 1111 235689999999986  55


Q ss_pred             EEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC------CC
Q 023643          108 LSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG------DS  181 (279)
Q Consensus       108 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~  181 (279)
                      ++. .+ .|.+||.++.... .........                    ....++.++++|+++++++...      .+
T Consensus       105 v~~-~~-gl~~~d~~~g~~~-~~~~~~~~~--------------------~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~  161 (326)
T 2ghs_A          105 IAS-DD-GLFLRDTATGVLT-LHAELESDL--------------------PGNRSNDGRMHPSGALWIGTMGRKAETGAG  161 (326)
T ss_dssp             EEE-TT-EEEEEETTTCCEE-EEECSSTTC--------------------TTEEEEEEEECTTSCEEEEEEETTCCTTCE
T ss_pred             EEE-CC-CEEEEECCCCcEE-EEeeCCCCC--------------------CCCCCCCEEECCCCCEEEEeCCCcCCCCce
Confidence            544 44 4889987543210 000000000                    0012688999999986655432      25


Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCC--CC-ceE--EEecCCccccccCcceeee
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCK--SG-KCI--KVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~--~~-~~~--~~~~~~~~~~~~~~~~~v~  255 (279)
                      .|..+|  +++... +..+......++|+|+++.+ ++.+.++.|.+||+.  ++ +..  ..+..     +........
T Consensus       162 ~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~-----~~~~~~~p~  233 (326)
T 2ghs_A          162 SIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID-----STGIKGGMD  233 (326)
T ss_dssp             EEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE-----CTTSSSEEE
T ss_pred             EEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE-----CCCCCCCCC
Confidence            666666  454433 32233456789999999865 455667899999986  55 321  11110     012234567


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .++++++|.++++...++.|..||
T Consensus       234 gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          234 GSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEECTTSCEEEEEETTTEEEEEC
T ss_pred             eeEECCCCCEEEEEeCCCEEEEEC
Confidence            899999998887776667787775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=4.9e-11  Score=93.02  Aligned_cols=221  Identities=10%  Similarity=0.007  Sum_probs=128.5

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecC-----CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASS-----DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      +...+..+++++    +++++++-..     ++.|.+||+.++.....+.+.             .....+...+..+++
T Consensus        65 ~~~~p~gv~~d~----~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~-------------~~~~~~~~~~~~v~v  127 (343)
T 2qe8_A           65 TFDTVLGIKSDG----NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLP-------------PPITLSNSFVNDLAV  127 (343)
T ss_dssp             CCSCEEEEEECS----SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECC-------------TTTSCTTCCCCEEEE
T ss_pred             ceeEeeEEEEcC----CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECC-------------hhhcccccccceEEE
Confidence            456899999999    7877666543     578999999874311111100             001123345688999


Q ss_pred             cCCCCceEEEEee---CCCcEEEeecCCCccCcceeeeccCc-cc--ce-EE-----eecCCCCCccccCCCCCCceeEE
Q 023643           99 YGGNEDALLLSCG---DDGRICGWRWKEFTESKVPINLQGNH-VK--PV-LD-----LVNHQHKGPWGALSPVPENNAIA  166 (279)
Q Consensus        99 ~~~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~-~~--~~-~~-----~~~~~~~~~~~~~~~~~~i~~~~  166 (279)
                      .|++. ..+++..   .++.|.+||+.+..   ......++. ..  +. ..     +......+...  .....+..++
T Consensus       128 d~~~g-~~yvtd~~~~~~~~i~v~d~~~g~---~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~--~~~~~~~gia  201 (343)
T 2qe8_A          128 DLIHN-FVYISDPAPDDKAALIRVDLQTGL---AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVI--RPHLGVNGIV  201 (343)
T ss_dssp             ETTTT-EEEEEECCSGGGCEEEEEETTTCC---EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEE--CCCCCEEEEE
T ss_pred             ecCCC-EEEEEcCccCCCCeEEEEECCCCC---EEEEecCCCcccccccceeECCEEEEeccCCCcee--ceecccceeE
Confidence            98654 2455555   68899999986432   111111100 00  00 00     00000000000  0012368899


Q ss_pred             EcCCCCeEEEecCCC-eEEEEecC---CCc-----EEE--EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          167 VDPQGGAIFSAAGDS-CAYCWDVE---SSR-----IKM--VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       167 ~~~~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      |+|+++.|+++...+ .+..++..   .+.     ...  ...++......++++++|+++++...++.|.+||..+++.
T Consensus       202 ~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          202 LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence            999999888876655 55555532   110     000  1112334566799999999999999999999999856764


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcce
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNY  274 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  274 (279)
                      .....       ..+.....+++|++++.++++.+..+.
T Consensus       282 ~~~~~-------~~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          282 KLLVT-------DEKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             EEEEE-------CGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             EEEEE-------CCceecCCeeEECCCCcEEEEeCcccc
Confidence            33331       112346789999999998888775543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=1.5e-10  Score=98.75  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=118.1

Q ss_pred             cccceEEEEECCCCCCCCCEEEE-----ecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVI-----ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      |...+..++|||    |+++||-     |+...+|++||+.++                   +.+.. ..+......++|
T Consensus       127 ~~~~l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg-------------------~~~~~-~~~~~k~~~~~W  182 (693)
T 3iuj_A          127 GTTALDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESK-------------------QPLET-PLKDVKFSGISW  182 (693)
T ss_dssp             SCCEEEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTC-------------------SEEEE-EEEEEESCCCEE
T ss_pred             CcEEEEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCC-------------------CCCcc-ccCCceeccEEE
Confidence            445688899999    9999884     333357999999984                   22111 001111246789


Q ss_pred             cCCCCceEEEEeeCCCc-------------EEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643           99 YGGNEDALLLSCGDDGR-------------ICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI  165 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  165 (279)
                      + +++  .|+.++.+..             |++|++.+...... ..+......+                   .....+
T Consensus       183 s-Dg~--~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-~v~~~~~~~~-------------------~~~~~~  239 (693)
T 3iuj_A          183 L-GNE--GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR-LVFGAIPAQH-------------------HRYVGA  239 (693)
T ss_dssp             E-TTT--EEEEEESSCCC-------CCCCEEEEEETTSCGGGCE-EEESCSGGGC-------------------CSEEEE
T ss_pred             e-CCC--EEEEEEecCcccccccccCCCcEEEEEECCCCcccce-EEEecCCCCC-------------------eEEEEE
Confidence            9 988  7777776643             88888764322111 1111110000                   014678


Q ss_pred             EEcCCCCeEEEec----CCCeEEEEecCCCc-EEEEeecCCcceEEEEEcCCCcE-EEEecCC---CeEEEEeCCCCce-
Q 023643          166 AVDPQGGAIFSAA----GDSCAYCWDVESSR-IKMVFKGHSDYLHCIVARNSTNQ-IVTGSED---GTARIWDCKSGKC-  235 (279)
Q Consensus       166 ~~~~~~~~l~~~~----~d~~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d---~~i~vwd~~~~~~-  235 (279)
                      .|+|++++|+...    ....|+++|+.++. ....+..+....... +++++.. ++....+   +.|..+|+.++.. 
T Consensus       240 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~  318 (693)
T 3iuj_A          240 TVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA  318 (693)
T ss_dssp             EECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             EEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            8999999875533    23589999998763 344555565555554 5565554 4444443   6799999987654 


Q ss_pred             -EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC-cc--eEEeCC
Q 023643          236 -IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA-TN--YVILFS  279 (279)
Q Consensus       236 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~wd  279 (279)
                       ...+.        .|...+.  .|++++++|+.... ++  .|.+||
T Consensus       319 ~~~~l~--------~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          319 HWRDLI--------PERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             GCEEEE--------CCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             ccEEEe--------cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence             23342        2333333  78888888776654 33  566654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.31  E-value=2.3e-10  Score=89.20  Aligned_cols=214  Identities=8%  Similarity=-0.015  Sum_probs=125.2

Q ss_pred             cceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      .....++++|    +++++++..  .++.++||.+.++. ..  .+.+          .......|-..+.++++.+++.
T Consensus        17 ~~p~~va~~~----~g~~~v~~~~~~~~~~~l~~~~~g~-~~--~~p~----------~~~~~~~~~~~p~gv~~d~~g~   79 (343)
T 2qe8_A           17 LAPGNITLTP----DGRLFLSLHQFYQPEMQVAELTQDG-LI--PFPP----------QSGNAIITFDTVLGIKSDGNGI   79 (343)
T ss_dssp             SCEEEEEECT----TSCEEEEECGGGCCSCSEEEEETTE-EE--ESCC----------CCSSCCCCCSCEEEEEECSSSE
T ss_pred             CCcceEEECC----CCCEEEEeCCCCCCceEEEEECCCC-ee--cCCC----------cccCcccceeEeeEEEEcCCCc
Confidence            6789999999    899988863  23435666654321 10  0000          0011224566899999999975


Q ss_pred             ceEEEEeeC-----CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-
Q 023643          104 DALLLSCGD-----DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-  177 (279)
Q Consensus       104 ~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  177 (279)
                        ++++-..     ++.|.+||+.+.+   ....+....           ..     ..+...+..++++|++..++.+ 
T Consensus        80 --L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~-----------~~-----~~~~~~~~~v~vd~~~g~~yvtd  138 (343)
T 2qe8_A           80 --VWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPP-----------PI-----TLSNSFVNDLAVDLIHNFVYISD  138 (343)
T ss_dssp             --EEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCT-----------TT-----SCTTCCCCEEEEETTTTEEEEEE
T ss_pred             --EEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECCh-----------hh-----cccccccceEEEecCCCEEEEEc
Confidence              5554433     5789999976432   111111000           00     0001125789999865555444 


Q ss_pred             c---CCCeEEEEecCCCcEEEEeecCC-----------------------------cceEEEEEcCCCcEEEEecCCC-e
Q 023643          178 A---GDSCAYCWDVESSRIKMVFKGHS-----------------------------DYLHCIVARNSTNQIVTGSEDG-T  224 (279)
Q Consensus       178 ~---~d~~i~i~d~~~~~~~~~~~~~~-----------------------------~~i~~i~~~~~~~~l~~~~~d~-~  224 (279)
                      .   .++.|.+||+.+++..+.+.+|.                             ..+..|+++|+++.|+.+..++ .
T Consensus       139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~  218 (343)
T 2qe8_A          139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTS  218 (343)
T ss_dssp             CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSE
T ss_pred             CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCe
Confidence            3   57899999999887776654321                             1357899999998887776655 4


Q ss_pred             EEEEeCC---CCceE-EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          225 ARIWDCK---SGKCI-KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       225 i~vwd~~---~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |..++..   .+... ..+...  ....++......++++++|.++++...++.|.+||
T Consensus       219 l~~~~~~~~~~~~~~~~~~~~~--~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          219 MYRIKSADLSNLQLTDAELGSK--IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             EEEEEHHHHTCTTCCHHHHHTT--CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             EEEEEHHHhcCCCCChhhhhcc--eEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence            5444421   11100 000000  00012223456789999999999998899999885

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.30  E-value=8.3e-13  Score=103.95  Aligned_cols=179  Identities=9%  Similarity=-0.008  Sum_probs=97.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|+.||.++++.  +..+..  +++.+..+.+    ++.++++++.||.|+.||..+++                  
T Consensus        17 ~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~----~g~~~v~~s~dg~l~a~d~~tG~------------------   70 (369)
T 2hz6_A           17 LDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHV----EEPAFLPDPNDGSLYTLGSKNNE------------------   70 (369)
T ss_dssp             TTSEEEEEETTTCCE--EEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----C------------------
T ss_pred             CCCEEEEEECCCCCE--EEEecC--CCceecceEc----CCCEEEEeCCCCEEEEEECCCCc------------------
Confidence            378999999887743  334443  4555555555    67788888999999999998743                  


Q ss_pred             cccccccCCcc-CeE-EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           81 EPDGFLHGHDG-PAY-DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        81 ~~~~~~~~h~~-~v~-~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       .+..+..+.. .+. +..+. .+.  .+++++.|+.|+.||.++++..   ..+...                      
T Consensus        71 -~~w~~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~---w~~~~~----------------------  121 (369)
T 2hz6_A           71 -GLTKLPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQ---QTLSSA----------------------  121 (369)
T ss_dssp             -CSEECSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC------------------------------------
T ss_pred             -eeeeeeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEE---EEecCC----------------------
Confidence             2222221110 000 00011 233  6888889999999998754221   111110                      


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC---cEEEEecCCCeEEEEeCCCCce
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST---NQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                          ....++|++..+++++.++.|+.||.++++.+..+..+.  ....++.++.   ..+++++.||.|+.||.++|+.
T Consensus       122 ----~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          122 ----FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             ---------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             ----CcccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence                012345677889999999999999999998776665321  1222333322   5677788999999999999998


Q ss_pred             EEEec
Q 023643          236 IKVID  240 (279)
Q Consensus       236 ~~~~~  240 (279)
                      +....
T Consensus       196 ~W~~~  200 (369)
T 2hz6_A          196 LWIQN  200 (369)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=1.5e-10  Score=90.28  Aligned_cols=230  Identities=11%  Similarity=-0.039  Sum_probs=134.8

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCcc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNSK   73 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~   73 (279)
                      .|.+.|.++.+  .+..+..-..+  .+.++|    +++++.++.          .++.|.+||+.+.            
T Consensus        47 ~vsvID~~t~~--v~~~i~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------  106 (368)
T 1mda_H           47 ENWVSCAGCGV--TLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------  106 (368)
T ss_dssp             EEEEEETTTTE--EEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------
T ss_pred             eEEEEECCCCe--EEEEEeCCCCC--ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCC------------
Confidence            66788877764  35666555555  799999    888888875          3688999999984            


Q ss_pred             cceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEeeC--CCcEEE--eecCCCccCcceee-------ecc
Q 023643           74 VQQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCGD--DGRICG--WRWKEFTESKVPIN-------LQG  135 (279)
Q Consensus        74 ~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~--dg~i~i--w~~~~~~~~~~~~~-------~~~  135 (279)
                             +.+..+.-.       ......+.++|+++  +++.+..  +..+.+  +|+.+.   ..+..       ..+
T Consensus       107 -------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk--~lyVan~~~~~~v~V~~iD~~tv---~~i~v~~~~~~~p~g  174 (368)
T 1mda_H          107 -------LPIADIELPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASDD---QLTKSASCFHIHPGA  174 (368)
T ss_dssp             -------CEEEEEEETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEEE---EEEECSSCCCCEEEE
T ss_pred             -------CEEEEEECCCccccccCCCcceEEEcCCCC--EEEEEccCCCCeEEEEEEchhhc---eEEECCCceEEccCC
Confidence                   444444321       12345789999998  7777654  467888  997541   11100       000


Q ss_pred             C---------cccceEEeecC---CCCCcc---ccC-CCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc--EEEEe
Q 023643          136 N---------HVKPVLDLVNH---QHKGPW---GAL-SPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR--IKMVF  197 (279)
Q Consensus       136 ~---------~~~~~~~~~~~---~~~~~~---~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~  197 (279)
                      .         ....+.++...   .....+   ... ....+.   . .+++..++..+. +.+.+.|+.+..  .+..+
T Consensus       175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred             CeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence            0         00000111000   000000   000 000111   3 555566555666 899999986532  23322


Q ss_pred             ecC-------C---cceEEEEEcCCCcEEEEecC---------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEE
Q 023643          198 KGH-------S---DYLHCIVARNSTNQIVTGSE---------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCIT  258 (279)
Q Consensus       198 ~~~-------~---~~i~~i~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  258 (279)
                      ...       .   .....++++|+++.++.+..         ++.+.++|+.+++.+..+..        . ....+++
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--------g-~~p~gi~  320 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--------G-HDSDAII  320 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--------E-EEECEEE
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--------C-CCcceEE
Confidence            110       0   11122689999887776532         23566999999999888842        1 2578999


Q ss_pred             EcCCCC-EEEEEc-CcceEEeCC
Q 023643          259 LDASES-WLVRVR-ATNYVILFS  279 (279)
Q Consensus       259 ~~~~~~-~l~~~~-~d~~i~~wd  279 (279)
                      |+|||+ .+++.. .++.|.++|
T Consensus       321 ~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          321 AAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEccCCCCeEEEEE
Confidence            999997 455666 589998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.26  E-value=7.6e-09  Score=81.38  Aligned_cols=76  Identities=9%  Similarity=0.027  Sum_probs=63.0

Q ss_pred             eeEEEcCCCCeEEEecC----------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEec-CCCeEEEEeC
Q 023643          163 NAIAVDPQGGAIFSAAG----------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGS-EDGTARIWDC  230 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~vwd~  230 (279)
                      ..+.++|+++.++++..          .+.|.++|+.+++.+..+.. .....+++|+|+|+ .++++. .++.|.++|+
T Consensus       270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            34788999998888653          35799999999999988863 33578999999998 777777 5999999999


Q ss_pred             CCCceEEEe
Q 023643          231 KSGKCIKVI  239 (279)
Q Consensus       231 ~~~~~~~~~  239 (279)
                      .+++.+..+
T Consensus       349 ~t~~vv~~i  357 (373)
T 2mad_H          349 GAGDQDQST  357 (373)
T ss_pred             CCCCEEeee
Confidence            999998884

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.25  E-value=1.1e-08  Score=75.68  Aligned_cols=207  Identities=10%  Similarity=0.013  Sum_probs=130.9

Q ss_pred             cceeeeeeccc--ceEEEEECCCCCCCCCEEEEecC--CCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCc
Q 023643           16 SILKEREILTR--TVFRTVWGPSKDGSPDTIVIASS--DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHD   90 (279)
Q Consensus        16 ~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~   90 (279)
                      +.+.++. |..  ....+.|+|    ++.++++.+.  ++.|+++|+.++                   +.+..+. +..
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~----dg~Lyvstg~~~~s~v~~iD~~tg-------------------~v~~~i~l~~~   65 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE----NDTLFESTGLYGRSSVRQVALQTG-------------------KVENIHKMDDS   65 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS----TTEEEEEECSTTTCEEEEEETTTC-------------------CEEEEEECCTT
T ss_pred             eEEEEEE-CCCCCCcccEEEeC----CCeEEEECCCCCCCEEEEEECCCC-------------------CEEEEEecCCC
Confidence            4455554 443  357999999    7765555543  579999999984                   3333332 111


Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      .....+.+..  . .+.++.-.++.+.++|..+.+.   ...+.....                        ....++++
T Consensus        66 ~fgeGi~~~g--~-~lyv~t~~~~~v~viD~~t~~v---~~~i~~g~~------------------------~g~glt~D  115 (266)
T 2iwa_A           66 YFGEGLTLLN--E-KLYQVVWLKNIGFIYDRRTLSN---IKNFTHQMK------------------------DGWGLATD  115 (266)
T ss_dssp             CCEEEEEEET--T-EEEEEETTCSEEEEEETTTTEE---EEEEECCSS------------------------SCCEEEEC
T ss_pred             cceEEEEEeC--C-EEEEEEecCCEEEEEECCCCcE---EEEEECCCC------------------------CeEEEEEC
Confidence            2233555553  3 2556666789999999765322   112211100                        12245567


Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      ++.++++..++.|.++|..+.+.+..+.-..     ..+..+.|. ++..++....++.|.+.|..+++.+..+......
T Consensus       116 g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~  194 (266)
T 2iwa_A          116 GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLR  194 (266)
T ss_dssp             SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHH
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcc
Confidence            8888887788999999999998888776321     236678887 7776677767899999999999999998642100


Q ss_pred             -----cccCcceeeeEEEEcCCCCE-EEEEcCcceEEe
Q 023643          246 -----QLKGVISCVSCITLDASESW-LVRVRATNYVIL  277 (279)
Q Consensus       246 -----~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~  277 (279)
                           .-........+++|+|+++. ++++...+.+.+
T Consensus       195 ~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          195 KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             cccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence                 00001135689999999765 555555666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.19  E-value=2.1e-08  Score=73.47  Aligned_cols=196  Identities=10%  Similarity=0.061  Sum_probs=124.8

Q ss_pred             ceeeeeecccc--eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeE
Q 023643           17 ILKEREILTRT--VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAY   94 (279)
Q Consensus        17 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~   94 (279)
                      .+.++. |...  ...+.|+.     +.++.+.+.+|.|+++|+.++                   +.+..+......-.
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~~-----~~Ly~stG~~g~v~~iD~~Tg-------------------kv~~~~l~~~~Fge   99 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFHQ-----GHFFESTGHQGTLRQLSLESA-------------------QPVWMERLGNIFAE   99 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET-----TEEEEEETTTTEEEECCSSCS-------------------SCSEEEECTTCCEE
T ss_pred             EEEEEc-CCCccccceEEEEC-----CEEEEEcCCCCEEEEEECCCC-------------------cEEeEECCCCccee
Confidence            344553 4332  46788865     577888888999999999984                   33333311111123


Q ss_pred             EEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643           95 DVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus        95 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      .+.+..+ .  +.+..-.++.+.++|.++.+..   ..+.....                       -..++  ++++.|
T Consensus       100 Git~~g~-~--Ly~ltw~~~~v~V~D~~Tl~~~---~ti~~~~e-----------------------GwGLt--~Dg~~L  148 (268)
T 3nok_A          100 GLASDGE-R--LYQLTWTEGLLFTWSGMPPQRE---RTTRYSGE-----------------------GWGLC--YWNGKL  148 (268)
T ss_dssp             EEEECSS-C--EEEEESSSCEEEEEETTTTEEE---EEEECSSC-----------------------CCCEE--EETTEE
T ss_pred             EEEEeCC-E--EEEEEccCCEEEEEECCcCcEE---EEEeCCCc-----------------------eeEEe--cCCCEE
Confidence            4555443 2  5556667899999998654222   12111000                       12333  567788


Q ss_pred             EEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccc---
Q 023643          175 FSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ---  246 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---  246 (279)
                      +.+..++.|.++|..+.+.+..+.-..     ..+..+.|. +|+..+..-.+..|.+.|.++++.+..+.......   
T Consensus       149 ~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~  227 (268)
T 3nok_A          149 VRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA  227 (268)
T ss_dssp             EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT
T ss_pred             EEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc
Confidence            887779999999999999888776422     245667776 77767666678899999999999999987531100   


Q ss_pred             --ccCcceeeeEEEEcCCCC-EEEEE
Q 023643          247 --LKGVISCVSCITLDASES-WLVRV  269 (279)
Q Consensus       247 --~~~~~~~v~~~~~~~~~~-~l~~~  269 (279)
                        ......-.++||++|+++ +++||
T Consensus       228 ~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          228 GQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccccCcCCceEEEEEcCCCCEEEEeC
Confidence              011224678999999765 45555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=3.6e-09  Score=90.22  Aligned_cols=216  Identities=9%  Similarity=0.042  Sum_probs=123.4

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC-------------cEEEEeCCCCCcccccccC
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG-------------SITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-------------~i~iw~~~~~~~~~~~~~~   70 (279)
                      +|++||+++++.  +.. ..+......++|+ +    ++.|+.++.+.             .|++|++.+....      
T Consensus       156 ~i~v~dl~tg~~--~~~-~~~~~k~~~~~Ws-D----g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~------  221 (693)
T 3iuj_A          156 EIHLMDVESKQP--LET-PLKDVKFSGISWL-G----NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED------  221 (693)
T ss_dssp             EEEEEETTTCSE--EEE-EEEEEESCCCEEE-T----TTEEEEEESSCCC-------CCCCEEEEEETTSCGGG------
T ss_pred             EEEEEECCCCCC--Ccc-ccCCceeccEEEe-C----CCEEEEEEecCcccccccccCCCcEEEEEECCCCccc------
Confidence            588889887653  221 1111113566787 4    56666666553             3899998874211      


Q ss_pred             CcccceeeeccccccccC-CccCeEEEEecCCCCceEEE-EeeC---CCcEEEeecCCCccCcceeeeccCcccceEEee
Q 023643           71 NSKVQQLLGIEPDGFLHG-HDGPAYDVKFYGGNEDALLL-SCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLV  145 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~-s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (279)
                               ...+..... |.....++.|+|+++  +|+ +.+.   ...|+++|+......  ...+.....       
T Consensus       222 ---------~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~~~d~~~~~~~--~~~l~~~~~-------  281 (693)
T 3iuj_A          222 ---------DRLVFGAIPAQHHRYVGATVTEDDR--FLLISAANSTSGNRLYVKDLSQENAP--LLTVQGDLD-------  281 (693)
T ss_dssp             ---------CEEEESCSGGGCCSEEEEEECTTSC--EEEEEEESSSSCCEEEEEETTSTTCC--CEEEECSSS-------
T ss_pred             ---------ceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEccCCCCcEEEEEECCCCCCc--eEEEeCCCC-------
Confidence                     011122222 444578899999998  554 3332   358899998643211  111111110       


Q ss_pred             cCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEEEecCCCcE--EEEeecCCcceEEEEEcCCCcEEEEe
Q 023643          146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYCWDVESSRI--KMVFKGHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~  219 (279)
                                     ..... +++++..|+..++    .+.|..+|+.++..  ...+..|...+.  .|++++++|+..
T Consensus       282 ---------------~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~  343 (693)
T 3iuj_A          282 ---------------ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE  343 (693)
T ss_dssp             ---------------SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred             ---------------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence                           01222 5666665554443    36899999987654  234555665555  888988887766


Q ss_pred             cCCC---eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc----ceEEeCC
Q 023643          220 SEDG---TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT----NYVILFS  279 (279)
Q Consensus       220 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~wd  279 (279)
                      ..++   .|++||+..+ ....+..       .....+..+.+++++..|+....+    +.+..||
T Consensus       344 ~~~~g~~~l~~~d~~g~-~~~~l~~-------p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          344 YMVDATARVEQFDYEGK-RVREVAL-------PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             EEETTEEEEEEECTTSC-EEEEECC-------SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             EEECCeeEEEEEECCCC-eeEEeec-------CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            5544   6899998744 4455532       223456777888888766654333    5666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=2.9e-08  Score=72.77  Aligned_cols=198  Identities=12%  Similarity=0.029  Sum_probs=124.1

Q ss_pred             cceeeeeecccc--eEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc
Q 023643           16 SILKEREILTRT--VFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG   91 (279)
Q Consensus        16 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~   91 (279)
                      +.++++. |...  ...|.|+.     +.++.+.+.+|  .|+++|+.++                   +.+..+.-...
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~~-----~~LyestG~~g~S~v~~vD~~Tg-------------------kv~~~~~l~~~   86 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYRN-----GYFYESTGLNGRSSIRKVDIESG-------------------KTLQQIELGKR   86 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEET-----TEEEEEEEETTEEEEEEECTTTC-------------------CEEEEEECCTT
T ss_pred             EEEEEec-CCCCcccceEEEEC-----CEEEEECCCCCCceEEEEECCCC-------------------cEEEEEecCCc
Confidence            4455553 4433  47788874     46777777766  8999999984                   33333322111


Q ss_pred             -CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           92 -PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        92 -~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                       .-..+...  +. .+.+..-.++.+.++|.++.+.   ...+....                         ....++++
T Consensus        87 ~FgeGit~~--g~-~ly~ltw~~~~v~v~D~~t~~~---~~ti~~~~-------------------------eG~glt~d  135 (262)
T 3nol_A           87 YFGEGISDW--KD-KIVGLTWKNGLGFVWNIRNLRQ---VRSFNYDG-------------------------EGWGLTHN  135 (262)
T ss_dssp             CCEEEEEEE--TT-EEEEEESSSSEEEEEETTTCCE---EEEEECSS-------------------------CCCCEEEC
T ss_pred             cceeEEEEe--CC-EEEEEEeeCCEEEEEECccCcE---EEEEECCC-------------------------CceEEecC
Confidence             12334444  33 2455555689999999865422   22221110                         11233456


Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      +..|+.+..++.|.++|..+.+.+..+.-..     ..+..+.|. +|+..+..-.++.|.+.|.++++.+..+......
T Consensus       136 g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~  214 (262)
T 3nol_A          136 DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGIL  214 (262)
T ss_dssp             SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGG
T ss_pred             CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCc
Confidence            7778877778899999999999888776421     334567775 6777777667899999999999999998754211


Q ss_pred             c----ccCcceeeeEEEEcCCCCEEEEEc
Q 023643          246 Q----LKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       246 ~----~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      .    ......-.+++||+|+++.|+..+
T Consensus       215 ~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          215 AEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             GGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            0    011123568999999877665554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.13  E-value=4e-08  Score=77.57  Aligned_cols=220  Identities=16%  Similarity=0.098  Sum_probs=129.7

Q ss_pred             CCceeeeccccc--cccceeeee---e----cccceEEEEECCCCCCCCCEEEEecCC------CcEEEEeCCCCCcccc
Q 023643            2 CGDSTNWDEDAY--RKSILKERE---I----LTRTVFRTVWGPSKDGSPDTIVIASSD------GSITSYSIPSCISKLP   66 (279)
Q Consensus         2 dG~v~iw~~~~~--~~~~~~~~~---~----~~~~v~~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~   66 (279)
                      ++.|.++|.++.  +.+..+..+   .    -...-..+...|    ++ +++++..+      |.|.++|..+      
T Consensus       105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p----dG-i~Vs~~g~~~g~~~g~v~vlD~~T------  173 (462)
T 2ece_A          105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP----DA-IYISALGNEEGEGPGGILMLDHYS------  173 (462)
T ss_dssp             TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS----SC-EEEEEEEETTSCSCCEEEEECTTT------
T ss_pred             CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC----Ce-EEEEcCCCcCCCCCCeEEEEECCC------
Confidence            567889997643  223333332   0    111334567888    78 66665554      7899999998      


Q ss_pred             cccCCcccceeeeccccccccCC---ccCeEEEEecCCCCceEEEEee-------------------CCCcEEEeecCCC
Q 023643           67 LGLSNSKVQQLLGIEPDGFLHGH---DGPAYDVKFYGGNEDALLLSCG-------------------DDGRICGWRWKEF  124 (279)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~-------------------~dg~i~iw~~~~~  124 (279)
                                   .+.+..+..-   ...-..+.|+|+++  .+++..                   .+.+|.+||+.+.
T Consensus       174 -------------~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          174 -------------FEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             -------------CCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             -------------CeEEEEEccCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence                         3444444321   12234678899998  888774                   4789999998753


Q ss_pred             ccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE--cCCCCeEEEec------CCCeEEEEecCCCcE--E
Q 023643          125 TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV--DPQGGAIFSAA------GDSCAYCWDVESSRI--K  194 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~~~--~  194 (279)
                         +....+.......                    ....+.|  +|+++++++++      .+++|.+|....++.  +
T Consensus       239 ---k~~~tI~vg~~g~--------------------~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~  295 (462)
T 2ece_A          239 ---KRIHSLTLGEENR--------------------MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE  295 (462)
T ss_dssp             ---EEEEEEESCTTEE--------------------EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred             ---cEeeEEecCCCCC--------------------ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence               2222222110000                    0234445  99999888776      466887766554421  1


Q ss_pred             EEe--ecC----------------CcceEEEEEcCCCcEEEEec-CCCeEEEEeCCC---CceEEEecCCccccccCc--
Q 023643          195 MVF--KGH----------------SDYLHCIVARNSTNQIVTGS-EDGTARIWDCKS---GKCIKVIDPVKDKQLKGV--  250 (279)
Q Consensus       195 ~~~--~~~----------------~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~--  250 (279)
                      ..+  ...                ......|.++|||++|.++. ..+.|.+||+..   .+.+..+...-......|  
T Consensus       296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~  375 (462)
T 2ece_A          296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPA  375 (462)
T ss_dssp             EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTT
T ss_pred             EEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccc
Confidence            111  110                23467899999999876665 478999999853   355555532100000000  


Q ss_pred             ----ceeeeEEEEcCCCCEEEEEc
Q 023643          251 ----ISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       251 ----~~~v~~~~~~~~~~~l~~~~  270 (279)
                          ...-..++++|||++|+++.
T Consensus       376 G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          376 GHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccCCCCCCEEEEcCCCCEEEEEc
Confidence                01247789999999999887

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=9.6e-09  Score=80.26  Aligned_cols=191  Identities=7%  Similarity=-0.041  Sum_probs=117.4

Q ss_pred             CCCEEEEecC-----CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEee---
Q 023643           40 SPDTIVIASS-----DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG---  111 (279)
Q Consensus        40 ~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---  111 (279)
                      +++.+.+...     ++.|.+.|..+                   .+.+..+..-..+ . +.++|+++  +++.+.   
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t-------------------~~v~~~I~vG~~P-~-va~spDG~--~lyVan~~~   99 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEA-------------------GRVIGMIDGGFLP-N-PVVADDGS--FIAHASTVF   99 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTT-------------------TEEEEEEEECSSC-E-EEECTTSS--CEEEEEEEE
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCC-------------------CeEEEEEECCCCC-c-EEECCCCC--EEEEEcccc
Confidence            8888877754     67999999998                   4555555543444 4 99999998  665554   


Q ss_pred             -------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643          112 -------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC  182 (279)
Q Consensus       112 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~  182 (279)
                             .++.|.+||..+.+....+....+....        ...          ....++++|+|++++++..  ++.
T Consensus       100 ~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~--------~g~----------~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D          100 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL--------VGT----------YPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSC----------CGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEECCCccccc--------cCC----------CCceEEEcCCCCEEEEEEcCCCCe
Confidence                   4678999998754322222111100000        000          1367899999999988763  689


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC-CceEEEecCCccccccCcceee-eEEEEc
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS-GKCIKVIDPVKDKQLKGVISCV-SCITLD  260 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~~  260 (279)
                      |.++|+.+++.+.++.....   ...+....+.+++.+.||.+.+.++.+ ++........    +..-..++ ....|.
T Consensus       162 VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~~~~~~~~~~~~~  234 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHPEDEFLINHPAYS  234 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSCTTSCBCSCCEEE
T ss_pred             EEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----eccccccccccceeE
Confidence            99999999999998864321   223333456777888899999999876 5553322100    01111111 123554


Q ss_pred             -CCCCEEEEEcCcceEEeCC
Q 023643          261 -ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       261 -~~~~~l~~~~~d~~i~~wd  279 (279)
                       ++|++++ .+.+|.|.+.|
T Consensus       235 ~~dG~~~~-vs~~g~V~v~d  253 (386)
T 3sjl_D          235 QKAGRLVW-PTYTGKIHQID  253 (386)
T ss_dssp             TTTTEEEE-EBTTSEEEEEE
T ss_pred             cCCCcEEE-EeCCCEEEEEE
Confidence             5776554 44467776653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=3.7e-07  Score=68.38  Aligned_cols=216  Identities=11%  Similarity=0.047  Sum_probs=122.9

Q ss_pred             ceeeeccccccccc---eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSI---LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|+.+++++.....   ...+.........++|+|.   ++.++++-..++.|..+++....                  
T Consensus        11 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~~------------------   69 (267)
T 1npe_A           11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGE------------------   69 (267)
T ss_dssp             EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCC------------------
T ss_pred             eEEEEEecCcccccccceeeecCCCCcEEEEEEecC---CCEEEEEECCCCEEEEEecCCCC------------------
Confidence            46666666543211   1112222345789999982   34455566677899999987521                  


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                       ....+.........+++.|++. .++++-...+.|.+++++.. .....  ....            .          .
T Consensus        70 -~~~~~~~~~~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~-~~~~~--~~~~------------~----------~  122 (267)
T 1npe_A           70 -PTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGT-QRRVL--FDTG------------L----------V  122 (267)
T ss_dssp             -CEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEE--ECSS------------C----------S
T ss_pred             -cEEEEECCCCCccEEEEEecCC-eEEEEECCCCEEEEEEcCCC-CEEEE--EECC------------C----------C
Confidence             1111112224578899998755 25555566788999987521 11110  0000            0          0


Q ss_pred             CceeEEEcCCCCeEEEecC---CCeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCce
Q 023643          161 ENNAIAVDPQGGAIFSAAG---DSCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~  235 (279)
                      ....++++|++..|+.+..   .+.|..+++... ....+ .........++++|++. .+++-...+.|.++|+.....
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence            2478999997666665553   368888887643 22222 22334678999999755 456666778999999875443


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ...+.        .. .....++.. .+.++++....+.|..+
T Consensus       202 ~~~~~--------~~-~~P~gi~~d-~~~lyva~~~~~~v~~~  234 (267)
T 1npe_A          202 RKVLE--------GL-QYPFAVTSY-GKNLYYTDWKTNSVIAM  234 (267)
T ss_dssp             EEEEE--------CC-CSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEec--------CC-CCceEEEEe-CCEEEEEECCCCeEEEE
Confidence            33331        11 122455554 34444454455667654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.10  E-value=1e-07  Score=69.30  Aligned_cols=198  Identities=11%  Similarity=-0.007  Sum_probs=123.9

Q ss_pred             cceeeeeeccc--ceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeeccccccccCCcc
Q 023643           16 SILKEREILTR--TVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG   91 (279)
Q Consensus        16 ~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~   91 (279)
                      +++.++ .|..  -...+.|++     +.++.+.+.+|  .|+.+|+.++                   +.+..+.-...
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-----~~LyestG~~g~S~v~~vD~~tg-------------------kv~~~~~l~~~   64 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-----GHLYESTGETGRSSVRKVDLETG-------------------RILQRAEVPPP   64 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-----TEEEEEECCTTSCEEEEEETTTC-------------------CEEEEEECCTT
T ss_pred             EEEEEc-CCCCccccccEEEEC-----CEEEEECCCCCCceEEEEECCCC-------------------CEEEEEeCCCC
Confidence            445566 4543  366889986     46666666654  8999999984                   33333322111


Q ss_pred             -CeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           92 -PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        92 -~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                       .-..+....  . .+.+..-.++.+.++|.++.+.   ...+.....                       -..+  .++
T Consensus        65 ~fgeGi~~~~--~-~ly~ltw~~~~v~v~D~~tl~~---~~ti~~~~~-----------------------Gwgl--t~d  113 (243)
T 3mbr_X           65 YFGAGIVAWR--D-RLIQLTWRNHEGFVYDLATLTP---RARFRYPGE-----------------------GWAL--TSD  113 (243)
T ss_dssp             CCEEEEEEET--T-EEEEEESSSSEEEEEETTTTEE---EEEEECSSC-----------------------CCEE--EEC
T ss_pred             cceeEEEEeC--C-EEEEEEeeCCEEEEEECCcCcE---EEEEeCCCC-----------------------ceEE--eeC
Confidence             123344443  3 2555566789999999865422   111111100                       1233  456


Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCC-----cceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccc
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      +..|+++..++.|.++|..+.+.+..+.-..     ..+..+.+. +|+.++..-.+..|.+.|.++++.+..+......
T Consensus       114 g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~  192 (243)
T 3mbr_X          114 DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV  192 (243)
T ss_dssp             SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS
T ss_pred             CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc
Confidence            7777777778999999999999888776422     245566665 6776766667889999999999999998744211


Q ss_pred             cc-----cCcceeeeEEEEcCCCCEEEEEc
Q 023643          246 QL-----KGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       246 ~~-----~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      .-     .....-.++||++|+++.|+..+
T Consensus       193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          193 PDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            00     01224578999999766555443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.10  E-value=1.2e-08  Score=86.52  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      +.|..||+.+++.+..++. ..++....+...+..++.++.||.+++||.++++.+..+...       +...-.-+.|.
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~-------~~~~~~p~~y~  528 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG-------TGVVAAPSTYM  528 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-------SCCCSCCEEEE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC-------CCcccCCEEEE
Confidence            7899999999999988763 334444556667888888999999999999999999998643       22222334566


Q ss_pred             CCCCEEE
Q 023643          261 ASESWLV  267 (279)
Q Consensus       261 ~~~~~l~  267 (279)
                      ++|+.++
T Consensus       529 ~~G~~~v  535 (677)
T 1kb0_A          529 VDGRQYV  535 (677)
T ss_dssp             ETTEEEE
T ss_pred             eCCEEEE
Confidence            7776444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.08  E-value=2e-08  Score=85.36  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=58.5

Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      +|.|+.||+.+++.+..++.+.. ...-.+...+.+++.++.||.|+.||.++|+.+..++...       ...-.-+.|
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~-------~~~~~p~ty  525 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS-------GVMAAPVTY  525 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-------CCCSCCEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC-------CcccCceEE
Confidence            37899999999999988875542 2333455678899999999999999999999998885432       112233566


Q ss_pred             cCCCCEEE
Q 023643          260 DASESWLV  267 (279)
Q Consensus       260 ~~~~~~l~  267 (279)
                      ..+|+.++
T Consensus       526 ~~~G~qyv  533 (689)
T 1yiq_A          526 SVDGEQYV  533 (689)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence            77876443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.08  E-value=9.8e-09  Score=83.77  Aligned_cols=106  Identities=16%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             ceeEEEcCCCCeEEEec-CCCeEEEEecCCCc------------EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          162 NNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR------------IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                      ..++.++|||+++++++ .+..|.++|+.+.+            ...... -....+.++|+|+|...++.-.|++|.+|
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kw  357 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKW  357 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence            57899999999776655 57899999998653            334443 23457899999999666778889999999


Q ss_pred             eCCC----------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          229 DCKS----------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       229 d~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      |+..          .+.+.++..+-+   .+|...-.++.++|||++|++...
T Consensus       358 di~~a~~~~~g~~~~~vi~kidV~yq---pGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          358 NIEDAIRAYAGEKVDPIKDKLDVHYQ---PGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSC---EEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EhhHhhhhhcccccceeEEEeecccc---cccceeccceEeCCCCCEEEEcCC
Confidence            9977          556667654321   144444445567899999998743

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.00  E-value=6.4e-08  Score=76.45  Aligned_cols=200  Identities=12%  Similarity=0.013  Sum_probs=119.3

Q ss_pred             CCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc------C-CccCeEEEEecCCCCceEEEEee
Q 023643           40 SPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH------G-HDGPAYDVKFYGGNEDALLLSCG  111 (279)
Q Consensus        40 ~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~~~~~~~~~l~s~~  111 (279)
                      ++++| +.+..+++|.++|+.+.....               +...++.      . -......+...|++   +++++.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p---------------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~  155 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREP---------------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISAL  155 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSC---------------EEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEE
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCc---------------eeeeeechhhcccccCCCcccceeECCCe---EEEEcC
Confidence            55555 556788999999997532111               1111111      0 11133456677887   555655


Q ss_pred             CC------CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-------
Q 023643          112 DD------GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-------  178 (279)
Q Consensus       112 ~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------  178 (279)
                      .+      |.|.+.|.++.+   ...........                   ..--..+-|+|+++.+++..       
T Consensus       156 g~~~g~~~g~v~vlD~~T~~---v~~~~~~~~~~-------------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          156 GNEEGEGPGGILMLDHYSFE---PLGKWEIDRGD-------------------QYLAYDFWWNLPNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EETTSCSCCEEEEECTTTCC---EEEECCSBCTT-------------------CCCCCCEEEETTTTEEEECBCCCHHHH
T ss_pred             CCcCCCCCCeEEEEECCCCe---EEEEEccCCCC-------------------ccccceEEECCCCCEEEEccCcCcccc
Confidence            55      789999976532   22222111000                   00124578899999888874       


Q ss_pred             ------------CCCeEEEEecCCCcEEEEeecC--CcceEEEEE--cCCCcEEEEec------CCCeEEEEeCCCCce-
Q 023643          179 ------------GDSCAYCWDVESSRIKMVFKGH--SDYLHCIVA--RNSTNQIVTGS------EDGTARIWDCKSGKC-  235 (279)
Q Consensus       179 ------------~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~--~~~~~~l~~~~------~d~~i~vwd~~~~~~-  235 (279)
                                  ...+|.+||+.+++.+.++...  ......+.|  +|+++++..++      .+++|.+|....++. 
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~  293 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN  293 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence                        3689999999999888887653  134556666  99999877766      567888877655432 


Q ss_pred             -EEEecCCccc---cc-------cCcceeeeEEEEcCCCCEEEEEcC-cceEEeCC
Q 023643          236 -IKVIDPVKDK---QL-------KGVISCVSCITLDASESWLVRVRA-TNYVILFS  279 (279)
Q Consensus       236 -~~~~~~~~~~---~~-------~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd  279 (279)
                       .+.+......   .+       .+-......+.++|||++|.++.. .+.|.+||
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence             2222111100   00       000235788999999999887754 67788764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=2.1e-06  Score=64.25  Aligned_cols=201  Identities=11%  Similarity=-0.001  Sum_probs=117.8

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCC-CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +.|..+++++....  ............++++|    ++ .++++-...+.|.+++++...                   
T Consensus        58 ~~I~~~~~~g~~~~--~~~~~~~~~p~~ia~d~----~~~~lyv~d~~~~~I~~~~~~g~~-------------------  112 (267)
T 1npe_A           58 PSIGRASLHGGEPT--TIIRQDLGSPEGIALDH----LGRTIFWTDSQLDRIEVAKMDGTQ-------------------  112 (267)
T ss_dssp             TEEEEEESSSCCCE--EEECTTCCCEEEEEEET----TTTEEEEEETTTTEEEEEETTSCS-------------------
T ss_pred             CEEEEEecCCCCcE--EEEECCCCCccEEEEEe----cCCeEEEEECCCCEEEEEEcCCCC-------------------
Confidence            45666666654321  11111224678899998    54 455555667889999987421                   


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                      ..............+++.|++.  .|..+..   .+.|..++++.. ......  ...                      
T Consensus       113 ~~~~~~~~~~~P~~i~vd~~~g--~lyv~~~~~~~~~I~~~~~dg~-~~~~~~--~~~----------------------  165 (267)
T 1npe_A          113 RRVLFDTGLVNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMDGT-NRRILA--QDN----------------------  165 (267)
T ss_dssp             CEEEECSSCSSEEEEEEETTTT--EEEEEECCSSSCEEEEEETTSC-CCEEEE--CTT----------------------
T ss_pred             EEEEEECCCCCccEEEEeeCCC--EEEEEECCCCCcEEEEEecCCC-CcEEEE--ECC----------------------
Confidence            0001111123468899999655  4444433   367877776421 111000  000                      


Q ss_pred             CCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          159 VPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      ......++++|++..|+.+ ...+.|..+|+........+.. ......++.. .+..+++....+.|.++|..+++.+.
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~  243 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceE
Confidence            0124789999987766554 4568999999975443333332 2334667664 45566666677899999999999988


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASES  264 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~  264 (279)
                      .+..       +......++++.|++.
T Consensus       244 ~i~~-------g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          244 TFHP-------HKQTRLYGITIALSQC  263 (267)
T ss_dssp             EECC-------SSCCCCCCEEEECSCC
T ss_pred             EEcc-------ccccccceeeecCccC
Confidence            8852       2112356778888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=1.9e-08  Score=85.27  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=75.6

Q ss_pred             EcCCC---CeEEEecCCCeEEEEecCCCcEEEEeecCC-----------cce------------------------EEEE
Q 023643          167 VDPQG---GAIFSAAGDSCAYCWDVESSRIKMVFKGHS-----------DYL------------------------HCIV  208 (279)
Q Consensus       167 ~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~~i------------------------~~i~  208 (279)
                      ...+|   ..+++++.+|.++++|..+++++..++...           .++                        ..++
T Consensus       320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a  399 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS  399 (677)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred             cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence            33466   578999999999999999999987765221           011                        1468


Q ss_pred             EcCCCcEEEEecC-------------------------------------------CCeEEEEeCCCCceEEEecCCccc
Q 023643          209 ARNSTNQIVTGSE-------------------------------------------DGTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       209 ~~~~~~~l~~~~~-------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      ++|+..++++...                                           .|.|..||+.+++.+..+..    
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----  475 (677)
T 1kb0_A          400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----  475 (677)
T ss_dssp             EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----
T ss_pred             EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----
Confidence            8898777766432                                           27899999999998888732    


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          246 QLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                           ..++....+...+..++.++.||.+++||
T Consensus       476 -----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          476 -----VSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             -----SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             -----CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                 22334445666778888899999999886

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.96  E-value=5.3e-08  Score=77.40  Aligned_cols=190  Identities=8%  Similarity=-0.052  Sum_probs=114.5

Q ss_pred             CCCEEEEecC-C----CcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEee---
Q 023643           40 SPDTIVIASS-D----GSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG---  111 (279)
Q Consensus        40 ~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---  111 (279)
                      ++.++.+... +    +.|.++|..+                   .+.+..+..-..+  .+.++|+++  +++.+.   
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t-------------------~~vv~~I~vG~~P--gia~SpDgk--~lyVan~~~  139 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST-------------------GRILGMTDGGFLP--HPVAAEDGS--FFAQASTVF  139 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT-------------------TEEEEEEEECSSC--EEEECTTSS--CEEEEEEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC-------------------CEEEEEEECCCCC--ceEECCCCC--EEEEEeccc
Confidence            6666655543 2    6999999998                   4555555533445  899999998  665554   


Q ss_pred             -------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643          112 -------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC  182 (279)
Q Consensus       112 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~  182 (279)
                             .++.|.++|..+.+....+.........        ..          .....+.++|++++++++..  ++.
T Consensus       140 ~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g----------~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          140 ERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VG----------TYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BS----------CCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             cccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cC----------CCcceEEEcCCCCEEEEEecCCCCe
Confidence                   4678999998754322211110000000        00          01357799999999998764  578


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCccee-eeEEEEc
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISC-VSCITLD  260 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~  260 (279)
                      |.+.|+.+++.+..+.....    ....|+ .+.+++.+.||.+.+.++.+++...... .   .+.....+ ...+.|.
T Consensus       202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAFS  273 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEEC
T ss_pred             EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeeec
Confidence            99999999999888864221    233343 3556667778888888886665543221 0   00011111 1234678


Q ss_pred             CCCCEEEEEcCcceEEeC
Q 023643          261 ASESWLVRVRATNYVILF  278 (279)
Q Consensus       261 ~~~~~l~~~~~d~~i~~w  278 (279)
                      +++..++..+..+.+.+.
T Consensus       274 ~dg~~~~~~s~~g~V~Vi  291 (426)
T 3c75_H          274 LRSGRLVWPTYTGKIFQA  291 (426)
T ss_dssp             TTTCEEEEEBTTSEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEE
Confidence            887766666666666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=6.7e-08  Score=74.59  Aligned_cols=202  Identities=10%  Similarity=0.020  Sum_probs=114.3

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|..|| ...+  .+.....+...+.++...+    ++. |.+++.+  |..+|. +                   ++
T Consensus        39 ~~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~----~g~-l~v~t~~--l~~~d~-~-------------------g~   88 (330)
T 3hxj_A           39 NKNLYAIN-TDGS--VKWFFKSGEIIECRPSIGK----DGT-IYFGSDK--VYAINP-D-------------------GT   88 (330)
T ss_dssp             TTTTEEEC-TTSC--EEESSCGGGEEEECCEETT----TTE-ECCSSCE--EEEECC-C-------------------GG
T ss_pred             CCEEEEEC-CCCc--EEEEEecCCCcccceEEec----CCc-EEEecCc--EEEECC-C-------------------Cc
Confidence            45667777 4332  2323333344456666666    554 5555555  888876 3                   22


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ....+............. ++   .+..++.++.|..+|.+ ..   .........                      ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~---~~~~~~~~~----------------------~~  138 (330)
T 3hxj_A           89 EKWRFDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GT---EKWRFKTKK----------------------AI  138 (330)
T ss_dssp             GGGGSCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SC---EEEEEECSS----------------------CC
T ss_pred             EEEEEECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CC---EEEEEcCCC----------------------ce
Confidence            222222222112222222 33   67788888999999864 21   111111100                      01


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +.++...+++. +++++.++.|..+|.. ++.+..+......+.++...+++..++..   +.|..+| .+++.+.... 
T Consensus       139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~-  211 (330)
T 3hxj_A          139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY-  211 (330)
T ss_dssp             CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC-
T ss_pred             eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc-
Confidence            34556666665 6667778899999988 87777776556666777777777755544   7788899 7777776663 


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                             .....+.++..++++.+.+ ++.++.+..+
T Consensus       212 -------~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~  240 (330)
T 3hxj_A          212 -------AGYWTVTRPAISEDGTIYV-TSLDGHLYAI  240 (330)
T ss_dssp             -------CSSCCCSCCEECTTSCEEE-EETTTEEEEE
T ss_pred             -------cCCcceeceEECCCCeEEE-EcCCCeEEEE
Confidence                   2234567777777776444 4445555443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=1.3e-07  Score=72.95  Aligned_cols=204  Identities=12%  Similarity=0.019  Sum_probs=117.2

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.+..+|.+ ..  .......+...+.++...+    ++. +..++.++.|..+|.. +..                  
T Consensus       116 ~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~----~g~-l~vgt~~~~l~~~d~~-g~~------------------  168 (330)
T 3hxj_A          116 DGHLYAINTD-GT--EKWRFKTKKAIYATPIVSE----DGT-IYVGSNDNYLYAINPD-GTE------------------  168 (330)
T ss_dssp             TSEEEEECTT-SC--EEEEEECSSCCCSCCEECT----TSC-EEEECTTSEEEEECTT-SCE------------------
T ss_pred             CCEEEEEcCC-CC--EEEEEcCCCceeeeeEEcC----CCE-EEEEcCCCEEEEECCC-CCE------------------
Confidence            4556666665 22  1222333333445555555    455 5556677788888876 321                  


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                       ...+......+.++...+++.   +..++  +.|..+| .+.   .........                      ...
T Consensus       169 -~~~~~~~~~~~~~~~~d~~g~---l~v~t--~~l~~~d-~~g---~~~~~~~~~----------------------~~~  216 (330)
T 3hxj_A          169 -KWRFKTNDAITSAASIGKDGT---IYFGS--DKVYAIN-PDG---TEKWNFYAG----------------------YWT  216 (330)
T ss_dssp             -EEEEECSSCCCSCCEECTTCC---EEEES--SSEEEEC-TTS---CEEEEECCS----------------------SCC
T ss_pred             -eEEEecCCCceeeeEEcCCCE---EEEEe--CEEEEEC-CCC---cEEEEEccC----------------------Ccc
Confidence             111111223455556656664   44444  7788888 322   111111100                      012


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +.++...+++. +++++.++.|..+|. +++.+..+......+..+...+++ .|..++.+|.|..+|. +++.+..+. 
T Consensus       217 ~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-  291 (330)
T 3hxj_A          217 VTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-  291 (330)
T ss_dssp             CSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-
T ss_pred             eeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-
Confidence            56778887764 556777788888884 566666665444444455555555 5666778888999995 777776663 


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                             .....+.++..++++. |..++.+|.+++
T Consensus       292 -------~~~~~~~~~~~d~~g~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          292 -------TGSWIIATPVIDENGT-IYFGTRNGKFYA  319 (330)
T ss_dssp             -------CSSCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred             -------cCCccccceEEcCCCE-EEEEcCCCeEEE
Confidence                   2234567777878777 555778888775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.92  E-value=4e-06  Score=61.75  Aligned_cols=214  Identities=14%  Similarity=0.115  Sum_probs=127.6

Q ss_pred             eeeecccceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc--cCCccCeEEE
Q 023643           20 EREILTRTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL--HGHDGPAYDV   96 (279)
Q Consensus        20 ~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~   96 (279)
                      .+.+-...+..++|+|    ++. ++++...++.|...|...                    +.++.+  .+. .....|
T Consensus        21 ~l~g~~~~lSGla~~~----~~~~L~aV~d~~~~I~~ld~~g--------------------~v~~~i~l~g~-~D~EGI   75 (255)
T 3qqz_A           21 EIAGITNNISSLTWSA----QSNTLFSTINKPAAIVEMTTNG--------------------DLIRTIPLDFV-KDLETI   75 (255)
T ss_dssp             ECTTCCSCEEEEEEET----TTTEEEEEEETTEEEEEEETTC--------------------CEEEEEECSSC-SSEEEE
T ss_pred             ECCCcccCcceeEEeC----CCCEEEEEECCCCeEEEEeCCC--------------------CEEEEEecCCC-CChHHe
Confidence            3444557899999999    544 555677788888888872                    222222  222 447788


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      ++.+++.  ++++.-.++.+.++++.............         +       +............++|+|.++.|++
T Consensus        76 a~~~~g~--~~vs~E~~~~l~~~~v~~~~~i~~~~~~~---------~-------~~~~~~~N~g~EGLA~d~~~~~L~v  137 (255)
T 3qqz_A           76 EYIGDNQ--FVISDERDYAIYVISLTPNSEVKILKKIK---------I-------PLQESPTNCGFEGLAYSRQDHTFWF  137 (255)
T ss_dssp             EECSTTE--EEEEETTTTEEEEEEECTTCCEEEEEEEE---------C-------CCSSCCCSSCCEEEEEETTTTEEEE
T ss_pred             EEeCCCE--EEEEECCCCcEEEEEcCCCCeeeeeeeec---------c-------ccccccccCCcceEEEeCCCCEEEE
Confidence            8888775  66776677889999876432100000000         0       0000112234689999999987777


Q ss_pred             ecCCCeEEEEecC---CCcEEEEee-------cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceEEEecCCcc-
Q 023643          177 AAGDSCAYCWDVE---SSRIKMVFK-------GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD-  244 (279)
Q Consensus       177 ~~~d~~i~i~d~~---~~~~~~~~~-------~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-  244 (279)
                      +.......+|..+   ....+..+.       .+...+..++++|. +++++.....+.|.++|.. ++.+..+..... 
T Consensus       138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~  216 (255)
T 3qqz_A          138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS  216 (255)
T ss_dssp             EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG
T ss_pred             EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc
Confidence            7665444444443   111122221       12235688999995 6777888888999999964 667666654320 


Q ss_pred             ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          245 KQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       245 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ..+...-..-..|+|+++|+..++ ++-+.++.|
T Consensus       217 ~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          217 RGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             GGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             CCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            001111235678999999985555 666666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.91  E-value=8.4e-07  Score=68.37  Aligned_cols=110  Identities=14%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             ceeEEEcCCCCeEEEe-cCCCeEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecC----------CCeEEEE
Q 023643          162 NNAIAVDPQGGAIFSA-AGDSCAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSE----------DGTARIW  228 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----------d~~i~vw  228 (279)
                      ...++++|+++.|+++ +..+.|..|++....  ....+....+ ...+++.++|++.++...          .+.|..+
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~  265 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF  265 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence            3689999999866655 556899999987421  1122221223 788999999987776644          4678888


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      |. .++.+..+.....    .....++++++ .++.++++....+.|..+
T Consensus       266 d~-~G~~~~~~~~~~g----~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          266 DE-FGNILEVIPLPPP----FAGEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             CT-TSCEEEEEECCTT----TTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             CC-CCCEEEEEECCCC----CccccceEEEE-eCCEEEEeecCCCceEEE
Confidence            86 5777777743211    00234666666 356666666566777655

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.90  E-value=5.7e-08  Score=75.87  Aligned_cols=76  Identities=11%  Similarity=0.031  Sum_probs=62.0

Q ss_pred             eEEEcCCCCeEEEecC---------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEec-CCCeEEEEeCCC
Q 023643          164 AIAVDPQGGAIFSAAG---------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGS-EDGTARIWDCKS  232 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~d~~i~vwd~~~  232 (279)
                      .++++|+++.++++..         ++.+.++|+.+.+.+..+.... ....|+|+|+++ .+++.. .++.|.++|+.+
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            3789999998887643         2356699999999998887443 578999999987 566666 599999999999


Q ss_pred             CceEEEec
Q 023643          233 GKCIKVID  240 (279)
Q Consensus       233 ~~~~~~~~  240 (279)
                      ++.+.++.
T Consensus       347 ~kvv~~I~  354 (368)
T 1mda_H          347 DQDQSSVE  354 (368)
T ss_dssp             CEEEEECC
T ss_pred             CcEEEEEE
Confidence            99999985

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.87  E-value=9.1e-07  Score=68.18  Aligned_cols=207  Identities=11%  Similarity=0.053  Sum_probs=112.2

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccce-eeeccccccccCCccCeEEEEecC-CCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQ-LLGIEPDGFLHGHDGPAYDVKFYG-GNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~-~~~  103 (279)
                      ....+++|.+    +++++.++..++.|..|+..+.... .+......... ...+............+..+++.+ ++ 
T Consensus        19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-   92 (322)
T 2fp8_A           19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-   92 (322)
T ss_dssp             SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-
T ss_pred             CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-
Confidence            3456788998    8887888888999999988753211 00000000000 000000000001123578899997 55 


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecC---
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAG---  179 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~---  179 (279)
                        .|+.+...+.|..+|..... ..........  .+                  ......+++.+ ++...++-..   
T Consensus        93 --~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~--~~------------------~~~p~~i~~d~~~G~l~v~d~~~~~  149 (322)
T 2fp8_A           93 --QLYIVDCYYHLSVVGSEGGH-ATQLATSVDG--VP------------------FKWLYAVTVDQRTGIVYFTDVSTLY  149 (322)
T ss_dssp             --EEEEEETTTEEEEECTTCEE-CEEEESEETT--EE------------------CSCEEEEEECTTTCCEEEEESCSSC
T ss_pred             --cEEEEECCCCEEEEeCCCCE-EEEecccCCC--Cc------------------ccccceEEEecCCCEEEEECCcccc
Confidence              45555445558888754221 0111000000  00                  01247889999 8876665332   


Q ss_pred             --------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEE-EecCCCeEEEEeCCCCc--eEEEecCC
Q 023643          180 --------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGK--CIKVIDPV  242 (279)
Q Consensus       180 --------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~--~~~~~~~~  242 (279)
                                    ++.|..+|..+++...... .......++++|+++.|. +-...+.|.+|++....  ....+.. 
T Consensus       150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-  227 (322)
T 2fp8_A          150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-  227 (322)
T ss_dssp             CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-
T ss_pred             cccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-
Confidence                          3779999987765433222 123346799999988554 44667899999987521  1112210 


Q ss_pred             ccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          243 KDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       243 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                          +.+    ...++++++|+++++...
T Consensus       228 ----~~g----P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          228 ----IPN----PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             ----CSS----EEEEEECTTSCEEEEEEE
T ss_pred             ----CCC----CCCeEECCCCCEEEEecC
Confidence                012    567889999987666544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.84  E-value=9.7e-08  Score=81.21  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeecCC-cc--------------------------------------eEEEEEcCCC
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKGHS-DY--------------------------------------LHCIVARNST  213 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~--------------------------------------i~~i~~~~~~  213 (279)
                      .++.++.+|.++++|.++++++...+... ..                                      -..++++|+.
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  400 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT  400 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence            78889999999999999999885432111 00                                      0126788887


Q ss_pred             cEEEEecC---------------------------------------------CCeEEEEeCCCCceEEEecCCcccccc
Q 023643          214 NQIVTGSE---------------------------------------------DGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       214 ~~l~~~~~---------------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      .++++...                                             +|.|+.||+.+++.+..+...      
T Consensus       401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------  474 (689)
T 1yiq_A          401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------  474 (689)
T ss_dssp             TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------
T ss_pred             CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------
Confidence            77665421                                             478999999999998887421      


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          249 GVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                         .++..-.+...+.+++.|+.||.++.||
T Consensus       475 ---~~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          475 ---TIFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             ---SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ---CCccCccceECCCEEEEECCCCcEEEEE
Confidence               1222334555778899999999999986

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.83  E-value=8.9e-07  Score=69.75  Aligned_cols=99  Identities=10%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcccccc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLK  248 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  248 (279)
                      ++..+++++.++.|..+|..+++.+..... ....+.....  .+..|+.++.+|.|.++|..+++.+......      
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~------  347 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD------  347 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC------
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC------
Confidence            356788888899999999999998877652 1222222222  2567888899999999999999988877431      


Q ss_pred             CcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          249 GVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       249 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       ..........  .+..|+.++.+|.+..||
T Consensus       348 -~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          348 -SSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             -CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence             1111111222  245688888999998874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.76  E-value=3e-05  Score=60.35  Aligned_cols=195  Identities=11%  Similarity=0.003  Sum_probs=111.3

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      .....++|++.   ++.++.+-...+.|..+++....                   ....+.........+++.+.+. .
T Consensus        73 ~~~~~l~~d~~---~~~ly~~D~~~~~I~r~~~~g~~-------------------~~~~~~~~~~~p~glavd~~~g-~  129 (349)
T 3v64_C           73 ENAIALDFHHR---RELVFWSDVTLDRILRANLNGSN-------------------VEEVVSTGLESPGGLAVDWVHD-K  129 (349)
T ss_dssp             SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEETTTT-E
T ss_pred             CceEEEEEecc---ccEEEEEeccCCceEEEecCCCC-------------------ceEEEeCCCCCccEEEEecCCC-e
Confidence            45788999972   45555665677889999887631                   1111111223356788887554 2


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-CC-CeE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-GD-SCA  183 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i  183 (279)
                      ++++-...+.|.+.+++.. ... . ......                      .....++++|.+..|+... .. +.|
T Consensus       130 ly~~d~~~~~I~~~~~dG~-~~~-~-l~~~~l----------------------~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          130 LYWTDSGTSRIEVANLDGA-HRK-V-LLWQSL----------------------EKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             EEEEETTTTEEEEEETTSC-SCE-E-EECTTC----------------------SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEEEcCCCCeEEEEcCCCC-ceE-E-EEeCCC----------------------CCcceEEEecCcCeEEEeccCCCCEE
Confidence            5566666788988887521 111 1 111100                      0147899999766555544 34 788


Q ss_pred             EEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          184 YCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      ..+++............-.....++++|++ +++++-...+.|..+|+........+.        .......++++. .
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--------~~~~~P~giav~-~  255 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--------QGLPHPFAITVF-E  255 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEE-T
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe--------CCCCCceEEEEE-C
Confidence            888876433322222234567899999864 555566677889999986433333331        112234566663 3


Q ss_pred             CCEEEEEcCcceEEe
Q 023643          263 ESWLVRVRATNYVIL  277 (279)
Q Consensus       263 ~~~l~~~~~d~~i~~  277 (279)
                      +.++++-...+.|..
T Consensus       256 ~~ly~td~~~~~V~~  270 (349)
T 3v64_C          256 DSLYWTDWHTKSINS  270 (349)
T ss_dssp             TEEEEEETTTTEEEE
T ss_pred             CEEEEecCCCCeEEE
Confidence            455555545555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.75  E-value=1.9e-05  Score=62.46  Aligned_cols=214  Identities=9%  Similarity=-0.040  Sum_probs=119.4

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      .|+..++++....   .+.........++|.+.   ++.++++-...+.|..+++....                   ..
T Consensus        97 ~I~~i~~~~~~~~---~~~~~~~~~~gl~~d~~---~~~ly~~D~~~~~I~r~~~~g~~-------------------~~  151 (386)
T 3v65_B           97 DIRQVLPHRSEYT---LLLNNLENAIALDFHHR---RELVFWSDVTLDRILRANLNGSN-------------------VE  151 (386)
T ss_dssp             CEEEECTTSCCCE---EEECSCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCC-------------------EE
T ss_pred             cceeeccCCCcEE---EEecCCCccEEEEEecC---CCeEEEEeCCCCcEEEEecCCCC-------------------cE
Confidence            4555555553321   12122345788999972   45556666677889999987531                   11


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      ..+.........+++.+.+. .++++-...+.|.+.+++.. . .... .....                      ....
T Consensus       152 ~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~-~-~~~l-~~~~l----------------------~~P~  205 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGA-H-RKVL-LWQSL----------------------EKPR  205 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSC-S-CEEE-ECSSC----------------------SCEE
T ss_pred             EEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCC-c-eEEe-ecCCC----------------------CCCc
Confidence            11111222345678887554 25566666778888876421 1 1111 11100                      0247


Q ss_pred             eEEEcCCCCeEEEecC-C-CeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          164 AIAVDPQGGAIFSAAG-D-SCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .++++|.+..|+.... . +.|..+++............-.....|+++|++ +++++-+..+.|..+|+........+.
T Consensus       206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~  285 (386)
T 3v65_B          206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS  285 (386)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC
T ss_pred             EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE
Confidence            8999987776665543 3 688888886443333333334557899999864 555666677889999986443333332


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                              .......++++. .+.++++-...+.|..
T Consensus       286 --------~~~~~P~giav~-~~~ly~td~~~~~V~~  313 (386)
T 3v65_B          286 --------QGLPHPFAITVF-EDSLYWTDWHTKSINS  313 (386)
T ss_dssp             --------SSCSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             --------CCCCCceEEEEE-CCEEEEeeCCCCeEEE
Confidence                    112234566663 3455555555555554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.72  E-value=3.1e-06  Score=66.60  Aligned_cols=183  Identities=12%  Similarity=0.061  Sum_probs=102.7

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEe
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGW  119 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  119 (279)
                      ++..+++++.++.|..+|..+++.                   +-............... + .  .++.++.++.|..+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~-------------------~W~~~~~~~~~~~p~~~-~-~--~v~v~~~~g~l~~~  158 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTV-------------------AWQTKVAGEALSRPVVS-D-G--LVLIHTSNGQLQAL  158 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCE-------------------EEEEECSSCCCSCCEEE-T-T--EEEEECTTSEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-------------------EEEEeCCCceEcCCEEE-C-C--EEEEEcCCCeEEEE
Confidence            346777888899999999988532                   11111111100011111 2 3  68888889999999


Q ss_pred             ecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec
Q 023643          120 RWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      |.++.+   .........  +.....               ........  +..+++++.++.+..+|..+++.+.....
T Consensus       159 d~~tG~---~~W~~~~~~--~~~~~~---------------~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          159 NEADGA---VKWTVNLDM--PSLSLR---------------GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             ETTTCC---EEEEEECCC-------C---------------CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             ECCCCc---EEEEEeCCC--Cceeec---------------CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            976542   111111100  000000               00111222  35688888899999999999998877653


Q ss_pred             CCcc-------eEEEEEcC--CCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          200 HSDY-------LHCIVARN--STNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       200 ~~~~-------i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ....       +..+...|  .+..++.++.++.+..+|.++++.+......          ....+..  ++..|+.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----------~~~~~~~--~~~~l~~~~  284 (376)
T 3q7m_A          217 SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----------SVNDFIV--DGNRIYLVD  284 (376)
T ss_dssp             CC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----------CEEEEEE--ETTEEEEEE
T ss_pred             ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----------CCCCceE--ECCEEEEEc
Confidence            2110       00011112  2567777888999999999999988776321          1223333  245566666


Q ss_pred             CcceEEeCC
Q 023643          271 ATNYVILFS  279 (279)
Q Consensus       271 ~d~~i~~wd  279 (279)
                      .++.+..+|
T Consensus       285 ~~g~l~~~d  293 (376)
T 3q7m_A          285 QNDRVMALT  293 (376)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCeEEEEE
Confidence            677666553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.70  E-value=3.2e-06  Score=72.78  Aligned_cols=195  Identities=9%  Similarity=0.062  Sum_probs=106.1

Q ss_pred             ceEEEEEC-CCCCCCCCEEEEecC-CC----cEEEEeCCCCCcccccccCCcccceeeeccccc-cccCCccCeEEEEec
Q 023643           27 TVFRTVWG-PSKDGSPDTIVIASS-DG----SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG-FLHGHDGPAYDVKFY   99 (279)
Q Consensus        27 ~v~~~~~~-~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~   99 (279)
                      .+...+|| |    ||++||.+.. +|    +|+++|+.++.                  +.+. .+.   .....+.|+
T Consensus       175 ~~~~~~~S~P----DG~~lAy~~~~~G~~~~~l~v~dl~~g~------------------~~l~~~~~---~~~~~~~Ws  229 (751)
T 2xe4_A          175 DVMEVKPAPP----EHDLVAFSVDMSGNEVYTIEFKRISDPS------------------QTIADKVS---GTNGEIVWG  229 (751)
T ss_dssp             EEEEEEECTT----TTCEEEEEEESSSSSCEEEEEEETTCTT------------------CCCCCCEE---EECSCCEEC
T ss_pred             EEeeeEecCC----CCCEEEEEEeCCCCceEEEEEEECCCCC------------------EeCCcccc---CceeeEEEe
Confidence            57788999 9    8998886432 22    49999998740                  2110 111   113467899


Q ss_pred             CCCCceEEEEeeCC-----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE
Q 023643          100 GGNEDALLLSCGDD-----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI  174 (279)
Q Consensus       100 ~~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  174 (279)
                      |+++  .|+....|     ..|.++++.+.... ....+.....                     .....+.|+|++++|
T Consensus       230 pDg~--~l~y~~~d~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~---------------------~~~~~~~~SpDg~~l  285 (751)
T 2xe4_A          230 PDHT--SLFYVTKDETLRENKVWRHVMGKLQSE-DVCLYEEHNP---------------------LFSAFMYKAADTNTL  285 (751)
T ss_dssp             SSTT--EEEEEEECTTCCEEEEEEEETTSCGGG-CEEEEECCCT---------------------TCEEEEEECTTSSEE
T ss_pred             cCCC--EEEEEEECCCCCCCEEEEEECCCCchh-cEEEEecCCC---------------------ceEEEEEECCCCCEE
Confidence            9998  56555554     24666666432111 0111110000                     013578899999987


Q ss_pred             EEec---CCCeEEEEecCCC--cE--EEEeecCCcceEEEEEcCCCcEEEEecCC----CeEEEEeCCCC-ceEE-EecC
Q 023643          175 FSAA---GDSCAYCWDVESS--RI--KMVFKGHSDYLHCIVARNSTNQIVTGSED----GTARIWDCKSG-KCIK-VIDP  241 (279)
Q Consensus       175 ~~~~---~d~~i~i~d~~~~--~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~-~~~~-~~~~  241 (279)
                      +...   ....|+++|+.++  +.  .............+.|+..+.+++....+    ..|..+|+.++ +... .+. 
T Consensus       286 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-  364 (751)
T 2xe4_A          286 CIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-  364 (751)
T ss_dssp             EEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-
T ss_pred             EEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-
Confidence            7654   2456899999875  23  33333344555666655444455554443    35777777653 2222 231 


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                            ......+..+.+. .+.++++...++..++|
T Consensus       365 ------~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          365 ------HSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             ------CCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             ------CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence                  1112245556665 33455566666765543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.66  E-value=2.2e-06  Score=70.17  Aligned_cols=88  Identities=8%  Similarity=-0.013  Sum_probs=59.2

Q ss_pred             eEEEEecCC--CcE-EEEeecCCcceEEEEEcCCCcEEEEe-cCCCeEEEEeCCCCc------------eEEEecCCccc
Q 023643          182 CAYCWDVES--SRI-KMVFKGHSDYLHCIVARNSTNQIVTG-SEDGTARIWDCKSGK------------CIKVIDPVKDK  245 (279)
Q Consensus       182 ~i~i~d~~~--~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~------------~~~~~~~~~~~  245 (279)
                      .|.+.|.++  ++. +..+.. .....++.++|||++++++ ..+.+|.++|+.+.+            ....+.     
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-----  328 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-----  328 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-----
T ss_pred             cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-----
Confidence            377777776  434 444432 2245689999999976555 478899999998653            222221     


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          246 QLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                          -......++|+|+|...++.--|+.|.+||
T Consensus       329 ----vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          329 ----LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             ----CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ----CCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence                123467899999995455667799999886

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=3e-06  Score=62.16  Aligned_cols=150  Identities=11%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             eEEEEecCCCCceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ...|.|+ ++.  ++.+.+.+|  .|+++|+.+.+..... .+..                         ......+.++
T Consensus        45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~-~l~~-------------------------~~FgeGit~~   95 (262)
T 3nol_A           45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQI-ELGK-------------------------RYFGEGISDW   95 (262)
T ss_dssp             EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEE-ECCT-------------------------TCCEEEEEEE
T ss_pred             cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEE-ecCC-------------------------ccceeEEEEe
Confidence            5788998 554  777777776  8999998764322111 1111                         0122223334


Q ss_pred             CCeEEEec-CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          171 GGAIFSAA-GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       171 ~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                      +..|+... .++.+.+||..+.+.+.++.....   ...+.++++.|+.+..++.|.++|..+.+.+..+....    .+
T Consensus        96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~----~g  168 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA----HG  168 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE----TT
T ss_pred             CCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc----CC
Confidence            55665554 478999999999999999875332   22333567777777678889999999999988885421    11


Q ss_pred             cc-eeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VI-SCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~-~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .. ..++.+.|. +|+..+..-.++.|.+.|
T Consensus       169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          169 EELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             ccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            11 234456665 676555554566665543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.62  E-value=3.5e-06  Score=62.46  Aligned_cols=180  Identities=8%  Similarity=-0.102  Sum_probs=107.3

Q ss_pred             Cceeeeccccccccceeeeeeccc-ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTR-TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +.|++.|+++.+.  +........ ....+++..     +.+.++...++.+.++|..+                   .+
T Consensus        44 s~v~~iD~~tg~v--~~~i~l~~~~fgeGi~~~g-----~~lyv~t~~~~~v~viD~~t-------------------~~   97 (266)
T 2iwa_A           44 SSVRQVALQTGKV--ENIHKMDDSYFGEGLTLLN-----EKLYQVVWLKNIGFIYDRRT-------------------LS   97 (266)
T ss_dssp             CEEEEEETTTCCE--EEEEECCTTCCEEEEEEET-----TEEEEEETTCSEEEEEETTT-------------------TE
T ss_pred             CEEEEEECCCCCE--EEEEecCCCcceEEEEEeC-----CEEEEEEecCCEEEEEECCC-------------------Cc
Confidence            4677777776642  333321111 112344433     34555666789999999998                   34


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+..+..-...-..  ++++++  .++.+..++.|.++|..+.+....+.....  ..++.                  .
T Consensus        98 v~~~i~~g~~~g~g--lt~Dg~--~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~--~~p~~------------------~  153 (266)
T 2iwa_A           98 NIKNFTHQMKDGWG--LATDGK--ILYGSDGTSILYEIDPHTFKLIKKHNVKYN--GHRVI------------------R  153 (266)
T ss_dssp             EEEEEECCSSSCCE--EEECSS--SEEEECSSSEEEEECTTTCCEEEEEECEET--TEECC------------------C
T ss_pred             EEEEEECCCCCeEE--EEECCC--EEEEECCCCeEEEEECCCCcEEEEEEECCC--Ccccc------------------c
Confidence            44444311111123  445665  454555688999999865432222111111  11110                  1


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecC-------------CcceEEEEEcCCCc-EEEEecCCCeEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH-------------SDYLHCIVARNSTN-QIVTGSEDGTARI  227 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~i~~~~~~~-~l~~~~~d~~i~v  227 (279)
                      ++.+.|. ++..++....++.|.+.|..+++.+..+...             ......|+|+|+++ .++++...+.+.+
T Consensus       154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            3567777 6654555556789999999999999888632             13568999999865 6777778999998


Q ss_pred             EeCCCC
Q 023643          228 WDCKSG  233 (279)
Q Consensus       228 wd~~~~  233 (279)
                      .++...
T Consensus       233 i~l~~~  238 (266)
T 2iwa_A          233 IKLHLV  238 (266)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=7.4e-06  Score=69.52  Aligned_cols=61  Identities=10%  Similarity=0.201  Sum_probs=48.3

Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +|.|..||+.+++.+.+.+.+. +.....+...+.+++.++.|+.|++||.++++.+..+..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            4889999999999988776433 223333445678889999999999999999999988854

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.57  E-value=1.2e-05  Score=59.00  Aligned_cols=150  Identities=8%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      .....|.|.. +.  ++.+.+.+|.|+++|+++.+.....  +.....                       -..+++  +
T Consensus        55 ~ftqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~F-----------------------geGit~--~  104 (268)
T 3nok_A           55 AFTQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME--RLGNIF-----------------------AEGLAS--D  104 (268)
T ss_dssp             CCEEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE--ECTTCC-----------------------EEEEEE--C
T ss_pred             cccceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE--CCCCcc-----------------------eeEEEE--e
Confidence            3357888874 33  7888889999999998765443333  222100                       123444  4


Q ss_pred             CCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          171 GGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       171 ~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                      +..|+.. -.++.+.+||..+.+.+.++..... -..++  ++++.|+.+..++.|.++|..+.+.+..+....    .+
T Consensus       105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~----~g  177 (268)
T 3nok_A          105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL----RG  177 (268)
T ss_dssp             SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE----TT
T ss_pred             CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC----CC
Confidence            4455444 4578999999999999999875322 23444  567777777779999999999999998885422    11


Q ss_pred             c-ceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          250 V-ISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       250 ~-~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      . -..++.+.|. +|+..+..-.++.|.+-
T Consensus       178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          178 QPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             cccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            1 1234566666 67655555455666553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.54  E-value=0.00013  Score=56.00  Aligned_cols=217  Identities=11%  Similarity=-0.041  Sum_probs=119.6

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      .|+..++++......... .......+++|.+.   ++.++.+-...+.|..++++....                  ..
T Consensus        14 ~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~---~~~lyw~D~~~~~I~r~~~~g~~~------------------~~   71 (318)
T 3sov_A           14 DLRLVDATNGKENATIVV-GGLEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTES------------------VQ   71 (318)
T ss_dssp             EEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGG---GTEEEEEETTTTEEEEEETTSSSC------------------CC
T ss_pred             eEEEEECCCCceEEEEEe-cCCCccEEEEEEeC---CCEEEEEECCCCcEEEEEccCCCc------------------eE
Confidence            566777766431111111 12345778999983   455666666778899999876310                  01


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      ..+...-.....+++.+.+. .++++-...+.|.+++++.. .....  .....                      ....
T Consensus        72 ~~~~~~l~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~-~~~~l--~~~~~----------------------~~P~  125 (318)
T 3sov_A           72 NVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDGS-LRKVL--FWQEL----------------------DQPR  125 (318)
T ss_dssp             EEEEECCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEE--ECSSC----------------------SSEE
T ss_pred             EEEcCCCCCccEEEEEcCCC-eEEEEECCCCEEEEEECCCC-cEEEE--EeCCC----------------------CCcc
Confidence            11111123456788886544 25566666788999887531 11111  00100                      0147


Q ss_pred             eEEEcCCCCeEEEecC--CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          164 AIAVDPQGGAIFSAAG--DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .++++|.+..|+.+..  .+.|...++............-.....++++|++ +++++-+..+.|..+|+..... ..+.
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~  204 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV  204 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEe
Confidence            8899987666666552  5788888876332222222233456899999864 4555666788899999864333 3331


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                             .+......++++.. +.++.+-...+.|..
T Consensus       205 -------~~~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          205 -------KGSLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             -------CSCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             -------cCCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence                   11112334556643 344444444555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.52  E-value=1e-05  Score=68.67  Aligned_cols=219  Identities=8%  Similarity=-0.055  Sum_probs=113.8

Q ss_pred             ceeeeccccccccceeeeee-cccceEEEEECCCCCCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            4 DSTNWDEDAYRKSILKEREI-LTRTVFRTVWGPSKDGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      .+.+||+.+.....+..... +.....++++.+    ++.+++.|+. +..+.+||..+..                 ..
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~lyv~GG~~~~~v~~yd~~t~~-----------------W~  278 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDS-----------------WI  278 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSSSTTCEEEEEGGGTE-----------------EE
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCC----CCCEEEeCCCCCCceEEecCcCCc-----------------ee
Confidence            46778877766544433322 222233567777    8999999984 4689999987632                 12


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEee-CC-----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcccc
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DD-----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGA  155 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (279)
                      .+..+..... -.++...++++  +++.|+ .+     ..+.+||+.+..   . ..+......++.   ....      
T Consensus       279 ~~~~~~~~R~-~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~---W-~~~~~~~~~p~~---~~~~------  342 (656)
T 1k3i_A          279 PGPDMQVARG-YQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKT---W-TSLPNAKVNPML---TADK------  342 (656)
T ss_dssp             ECCCCSSCCS-SCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTE---E-EEETTSCSGGGC---CCCT------
T ss_pred             ECCCCCcccc-ccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCc---c-eeCCCccccccc---cccc------
Confidence            2222222111 12445566777  888888 44     468889875421   1 010000000000   0000      


Q ss_pred             CCCCCCceeEEEcCCCCeEEEecC---------CCeEEEEecCCCcEEEEeecCCc---------ceEEEEEcC-CCcEE
Q 023643          156 LSPVPENNAIAVDPQGGAIFSAAG---------DSCAYCWDVESSRIKMVFKGHSD---------YLHCIVARN-STNQI  216 (279)
Q Consensus       156 ~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~---------~i~~i~~~~-~~~~l  216 (279)
                              ...+..++..++.++.         ...+..||..+.........+..         .-.++.|.. +++.+
T Consensus       343 --------~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~  414 (656)
T 1k3i_A          343 --------QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL  414 (656)
T ss_dssp             --------TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEE
T ss_pred             --------cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEE
Confidence                    0011123333333332         34678899887654433222211         224455543 67888


Q ss_pred             EEecCCC-----------eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          217 VTGSEDG-----------TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       217 ~~~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      +.|+.++           .|.+||..+.+........     ......-.+++..|++++++.|+.+
T Consensus       415 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-----mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          415 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-----LYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             EECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-----CSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             EEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC-----CCCCcccCCeEECCCCCEEEECCcc
Confidence            8888543           6888998877655432000     0111112344567899999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=7.1e-05  Score=57.13  Aligned_cols=192  Identities=11%  Similarity=0.019  Sum_probs=109.1

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      .....++|++    +++++++-..++.|..|+.....                    ...+. -...+..+++.++++  
T Consensus        32 ~~pegia~~~----~g~lyv~d~~~~~I~~~d~~g~~--------------------~~~~~-~~~~p~gia~~~dG~--   84 (306)
T 2p4o_A           32 TFLENLASAP----DGTIFVTNHEVGEIVSITPDGNQ--------------------QIHAT-VEGKVSGLAFTSNGD--   84 (306)
T ss_dssp             CCEEEEEECT----TSCEEEEETTTTEEEEECTTCCE--------------------EEEEE-CSSEEEEEEECTTSC--
T ss_pred             CCcceEEECC----CCCEEEEeCCCCeEEEECCCCce--------------------EEEEe-CCCCceeEEEcCCCc--
Confidence            4577899999    88888887788999999887521                    11111 123578899999987  


Q ss_pred             EEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          106 LLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       106 ~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                      ++++.....  .|..++..+... ........  ..                     ....++..+.+..+++-..++.|
T Consensus        85 l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~~--~~---------------------~~~g~~~~~~~~~~v~d~~~g~i  140 (306)
T 2p4o_A           85 LVATGWNADSIPVVSLVKSDGTV-ETLLTLPD--AI---------------------FLNGITPLSDTQYLTADSYRGAI  140 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCE-EEEEECTT--CS---------------------CEEEEEESSSSEEEEEETTTTEE
T ss_pred             EEEEeccCCcceEEEEcCCCCeE-EEEEeCCC--cc---------------------ccCcccccCCCcEEEEECCCCeE
Confidence            655554332  355555433211 00011000  00                     02344445544444444458899


Q ss_pred             EEEecCCCcE-EEEee---------cCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCC-Cce--EEEecCCccccccC
Q 023643          184 YCWDVESSRI-KMVFK---------GHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKS-GKC--IKVIDPVKDKQLKG  249 (279)
Q Consensus       184 ~i~d~~~~~~-~~~~~---------~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~-~~~--~~~~~~~~~~~~~~  249 (279)
                      +++|..+++. +....         ..-.....+  +|+++. +++-...+.|.+|++.. ++.  ...+.       . 
T Consensus       141 ~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-------~-  210 (306)
T 2p4o_A          141 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-------E-  210 (306)
T ss_dssp             EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-------E-
T ss_pred             EEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-------c-
Confidence            9999875432 21110         111234555  777754 56666788999999874 321  11110       0 


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                       ......++++++|+++++....+.|.++|
T Consensus       211 -~~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          211 -QTNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             -SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             -cCCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence             12346788999998777766667777664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=0.00011  Score=56.01  Aligned_cols=216  Identities=8%  Similarity=-0.017  Sum_probs=113.6

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeeec
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +.|..||.++..   ..... .......+++.+    +++++++.....  .|..++..++...                
T Consensus        53 ~~I~~~d~~g~~---~~~~~-~~~~p~gia~~~----dG~l~vad~~~~~~~v~~~d~~~g~~~----------------  108 (306)
T 2p4o_A           53 GEIVSITPDGNQ---QIHAT-VEGKVSGLAFTS----NGDLVATGWNADSIPVVSLVKSDGTVE----------------  108 (306)
T ss_dssp             TEEEEECTTCCE---EEEEE-CSSEEEEEEECT----TSCEEEEEECTTSCEEEEEECTTSCEE----------------
T ss_pred             CeEEEECCCCce---EEEEe-CCCCceeEEEcC----CCcEEEEeccCCcceEEEEcCCCCeEE----------------
Confidence            556666665532   11121 235688899999    888766654332  3555665553210                


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                       .+..+. .......++..+.+.  .+++-..++.|.++|......  ........ ...         ...   .....
T Consensus       109 -~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~--~v~~~~~~-~~~---------~~~---~~~~~  169 (306)
T 2p4o_A          109 -TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSG--SIWLEHPM-LAR---------SNS---ESVFP  169 (306)
T ss_dssp             -EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEE--EEEEECGG-GSC---------SST---TCCSC
T ss_pred             -EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcE--eEEEECCc-ccc---------ccc---cCCCC
Confidence             001111 112234455445443  455555688888888642100  00000000 000         000   00001


Q ss_pred             CceeEEEcCCCCeEEEe-cCCCeEEEEecCC-CcE--EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          161 ENNAIAVDPQGGAIFSA-AGDSCAYCWDVES-SRI--KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      ..+.+  +|+++.|+++ ...+.|..+|+.. ++.  ...+.. ......++++++|+++++....+.|.++|.. ++..
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~  245 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT  245 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence            13455  7788766554 5578999999874 321  112211 1345678999999988888788899999975 6553


Q ss_pred             EEecCCccccccCcceeeeEEEEc---CCCCEEEEEcC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLD---ASESWLVRVRA  271 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~  271 (279)
                      .....      .......++++|.   |++..|+.++.
T Consensus       246 ~~~~~------~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          246 IIAQA------EQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEECG------GGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEeec------ccccCCceEEEEecccCCCCEEEEECC
Confidence            32111      1122357899998   88776665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.49  E-value=8.6e-05  Score=56.93  Aligned_cols=194  Identities=11%  Similarity=0.158  Sum_probs=115.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC----CCc-eE-EEEeeC-
Q 023643           40 SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG----NED-AL-LLSCGD-  112 (279)
Q Consensus        40 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~-~~-l~s~~~-  112 (279)
                      ...+++.....+-+.+||+.                    ++.+..+..  +.++.+..-|.    ++. .+ +++.-. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~--------------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~   96 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD--------------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSE   96 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT--------------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECST
T ss_pred             CccEEEEEcCCCCEEEEcCC--------------------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCC
Confidence            44566666677889999995                    455555543  45677766662    110 02 334444 


Q ss_pred             -CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE--cCC-CC-eEEEecCCCeEEEEe
Q 023643          113 -DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV--DPQ-GG-AIFSAAGDSCAYCWD  187 (279)
Q Consensus       113 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~d~~i~i~d  187 (279)
                       +++|++|+++....  ..... +....++.              .....+..+++  +|. +. ++++...+|.+..|+
T Consensus        97 ~~n~l~vf~iDp~~~--~l~~i-~~~~~pv~--------------t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~  159 (355)
T 3amr_A           97 GKNTIEIYAIDGKNG--TLQSM-TDPDHPIA--------------TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYE  159 (355)
T ss_dssp             TCCEEEEEEECTTTC--CEEEC-SCTTSCEE--------------CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEE
T ss_pred             CCCeEEEEEECCCCC--ceeec-cccccCcC--------------CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEE
Confidence             58999998742211  11111 10000000              00012466677  774 43 678888899999998


Q ss_pred             cC-------CCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC-----CCceEEEecCCccccccCcceeee
Q 023643          188 VE-------SSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK-----SGKCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       188 ~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                      +.       +.+.+++|.. .+.+-.+...+....|+.+-++.-|..++.+     +++.+..+..      ..-...+.
T Consensus       160 l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvE  232 (355)
T 3amr_A          160 LKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIE  232 (355)
T ss_dssp             EEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEE
T ss_pred             EEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcc
Confidence            83       3467788874 3567888888888889989888777777754     3445554421      12223577


Q ss_pred             EEEE--cCCCC-EEEEEc-CcceEEeCC
Q 023643          256 CITL--DASES-WLVRVR-ATNYVILFS  279 (279)
Q Consensus       256 ~~~~--~~~~~-~l~~~~-~d~~i~~wd  279 (279)
                      .|++  .++++ +|++++ .+++..+||
T Consensus       233 GLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          233 GLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             eEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            8877  45555 566555 566777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.49  E-value=0.00016  Score=56.22  Aligned_cols=154  Identities=12%  Similarity=0.036  Sum_probs=91.2

Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ..+..++|.+... .++++-...+.|..++++... ....  .....                      .....+++++.
T Consensus        73 ~~~~~l~~d~~~~-~ly~~D~~~~~I~r~~~~g~~-~~~~--~~~~~----------------------~~p~glavd~~  126 (349)
T 3v64_C           73 ENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSN-VEEV--VSTGL----------------------ESPGGLAVDWV  126 (349)
T ss_dssp             SCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS-CEEE--ECSSC----------------------SCCCEEEEETT
T ss_pred             CceEEEEEecccc-EEEEEeccCCceEEEecCCCC-ceEE--EeCCC----------------------CCccEEEEecC
Confidence            3478999998665 245555567888888875321 1110  00000                      01368899875


Q ss_pred             CCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCC-cEEEEecCC-CeEEEEeCCCCceEEEecCCccccc
Q 023643          171 GGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNST-NQIVTGSED-GTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       171 ~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                      +..| ++-...+.|.+.++........+...-.....++++|.+ .++++-... +.|..+++.. .....+-       
T Consensus       127 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~-------  198 (349)
T 3v64_C          127 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIA-------  198 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESC-------
T ss_pred             CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEE-------
Confidence            5544 555567889999987544333333344567899999954 455555555 7898888754 3333331       


Q ss_pred             cCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643          248 KGVISCVSCITLDASESWLVRV-RATNYVILF  278 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  278 (279)
                      ...-.....++++|++..|..+ +..+.|..+
T Consensus       199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            1122345789999866655544 445556554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.47  E-value=0.00021  Score=54.85  Aligned_cols=220  Identities=10%  Similarity=-0.048  Sum_probs=120.6

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      ..|+..++++...  .... .......+++|++.   ++.++++-...+.|..+++.....                +..
T Consensus        10 ~~I~~i~~~~~~~--~~~~-~~~~~p~g~~~d~~---~~~ly~~D~~~~~I~~~~~~g~~~----------------~~~   67 (316)
T 1ijq_A           10 HEVRKMTLDRSEY--TSLI-PNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHG----------------VSS   67 (316)
T ss_dssp             SSEEEEETTSCCC--EEEE-CSCSSEEEEEEETT---TTEEEEEETTTTEEEEEEC------------------------
T ss_pred             CeEEEEECCCcce--Eehh-cCCCceEEEEEEeC---CCEEEEEECCCCcEEEEECCCCCC----------------Ccc
Confidence            4567777776532  1112 23356789999982   445556666778999999875100                000


Q ss_pred             c-ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           83 D-GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        83 ~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      . ..+...-.....+++.+.+. ++.++-...+.|.+.+++.. ......  ...            .          ..
T Consensus        68 ~~~~~~~~~~~p~glavd~~~~-~ly~~d~~~~~I~~~~~~g~-~~~~~~--~~~------------~----------~~  121 (316)
T 1ijq_A           68 YDTVISRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGV-KRKTLF--REN------------G----------SK  121 (316)
T ss_dssp             CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSS-SEEEEE--ECT------------T----------CC
T ss_pred             cEEEEeCCCCCcCEEEEeecCC-eEEEEECCCCEEEEEeCCCC-ceEEEE--ECC------------C----------CC
Confidence            0 11111223456788876544 25566567788999887521 101110  000            0          02


Q ss_pred             ceeEEEcCCCCeEEEecCC--CeEEEEecCCCcEEEEe-ecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEE
Q 023643          162 NNAIAVDPQGGAIFSAAGD--SCAYCWDVESSRIKMVF-KGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      ...++++|.+..|+.+...  +.|...++. +.....+ ...-.....++++|++. ++++-+..+.|..+|+... ...
T Consensus       122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~  199 (316)
T 1ijq_A          122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRK  199 (316)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE
T ss_pred             cceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceE
Confidence            4789999977766655442  688888876 4433333 22345678999998654 4555567789999998643 333


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+...     ........++++. .+.++++-...+.|..+
T Consensus       200 ~~~~~-----~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          200 TILED-----EKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             EEEEC-----TTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEeec-----CCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            33110     0111223566665 35555555556666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.46  E-value=0.00051  Score=59.68  Aligned_cols=203  Identities=9%  Similarity=-0.006  Sum_probs=120.8

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...|.++...+    ++.+.+ |+.+| |.+|+..+...... .           ........-....|.++...+++. 
T Consensus       262 ~~~i~~i~~d~----~g~lWi-gt~~G-l~~~~~~~~~~~~~-~-----------~~~~~~~~l~~~~i~~i~~D~~g~-  322 (795)
T 4a2l_A          262 SNYIRSLAMDS----QNRLWI-GTFND-LNIYHEGTDSFASY-S-----------SNPVENGSLSQRSVRSIFMDSQGG-  322 (795)
T ss_dssp             CSBEEEEEECT----TSCEEE-EESSC-EEEEETTTTEEEEE-C-----------CCTTSTTSCSSSCEEEEEECTTSC-
T ss_pred             CCeEEEEEEcC----CCCEEE-EeCCh-hheEcCCCCeEEEE-e-----------cCCCCCCCCCCCcEEEEEEeCCcC-
Confidence            35699999888    676554 44444 88888775321100 0           000000111345699999988885 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                        |..|+.++-|..++.....    ...+.....               ........|.++..++++. |.+|+.++-|.
T Consensus       323 --lWigt~~~Gl~~~~~~~~~----~~~~~~~~~---------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~  380 (795)
T 4a2l_A          323 --MWLGTYFGGLNYYHPIRNR----FKNIRNIPY---------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLN  380 (795)
T ss_dssp             --EEEEESSSCEEEECGGGGS----SEEECCCTT---------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEE
T ss_pred             --EEEEECCCCeEEeCCCccc----ceEEcCCCC---------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeE
Confidence              6667777788888854321    001100000               0000112478888888775 55677777799


Q ss_pred             EEecCCCcEEEEeec--------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643          185 CWDVESSRIKMVFKG--------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       185 i~d~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      .||..+++.......        ....|.+++..++++.|..|+.++-|.+||..+++.........    ......|.+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~----~l~~~~v~~  456 (795)
T 4a2l_A          381 LYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS----QLVNENVYA  456 (795)
T ss_dssp             EECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS----CCSCSCEEE
T ss_pred             EEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC----CcCCCeeEE
Confidence            999887654432211        23578999998888856667777779999988876543321110    123357889


Q ss_pred             EEEcCCCCEEEEEcCcc
Q 023643          257 ITLDASESWLVRVRATN  273 (279)
Q Consensus       257 ~~~~~~~~~l~~~~~d~  273 (279)
                      +..+++|.+.+... +|
T Consensus       457 i~~d~~g~lwigt~-~G  472 (795)
T 4a2l_A          457 ILPDGEGNLWLGTL-SA  472 (795)
T ss_dssp             EEECSSSCEEEEES-SC
T ss_pred             EEECCCCCEEEEec-Cc
Confidence            99998888666554 44

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=5.1e-05  Score=55.17  Aligned_cols=150  Identities=9%  Similarity=0.057  Sum_probs=90.5

Q ss_pred             cCeEEEEecCCCCceEEEEeeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      .....+.|++ +.  ++.+.+.+|  .|+.+|+.+.+..... .+...                         .......
T Consensus        21 ~ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~-------------------------~fgeGi~   71 (243)
T 3mbr_X           21 AFTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRA-EVPPP-------------------------YFGAGIV   71 (243)
T ss_dssp             CCEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT-------------------------CCEEEEE
T ss_pred             cccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEE-eCCCC-------------------------cceeEEE
Confidence            4577899987 33  667777654  8999998754222111 11110                         1122222


Q ss_pred             CCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccc
Q 023643          169 PQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       169 ~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                      +.+..|+.. -.++.+.+||..+.+.+.++...... ..++  ++++.|+.+..++.|.++|..+.+.+.++....    
T Consensus        72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~----  144 (243)
T 3mbr_X           72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA----  144 (243)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE----
T ss_pred             EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc----
Confidence            234555444 45789999999999999998754322 3444  556666666678999999999999988885421    


Q ss_pred             cCcc-eeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          248 KGVI-SCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       248 ~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                      .+.. ..++.+.+. +|+.++..-.+..|.+
T Consensus       145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v  174 (243)
T 3mbr_X          145 GGRPLDNLNELEWV-NGELLANVWLTSRIAR  174 (243)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence            1111 233455554 5655554444445544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.44  E-value=4.1e-05  Score=63.75  Aligned_cols=62  Identities=13%  Similarity=-0.008  Sum_probs=46.7

Q ss_pred             CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .++.|..||+.+++.+.++... ..+....+...+..++.++.|+.|+.+|.++|+.+..+..
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            3588999999999998877632 2222222233466777799999999999999999998864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.43  E-value=5.2e-06  Score=70.46  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeecCC------------cce------------------------EEEEEcCCCcEE
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKGHS------------DYL------------------------HCIVARNSTNQI  216 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~i------------------------~~i~~~~~~~~l  216 (279)
                      .++.++.+|.++++|..+++.+...+...            .++                        ..++++|+...+
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~  395 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence            68889999999999999999885443211            000                        125677765554


Q ss_pred             EEe------------------------------------cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          217 VTG------------------------------------SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       217 ~~~------------------------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      ...                                    ..+|.|..||+.+++.+......         .......+.
T Consensus       396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~~~~~~  466 (668)
T 1kv9_A          396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---------THWNGGTLS  466 (668)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---------SSCCCCEEE
T ss_pred             EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---------CCCcCceeE
Confidence            431                                    13488999999999988776421         122223344


Q ss_pred             CCCCEEEEEcCcceEEeCC
Q 023643          261 ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       261 ~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+.+++.++.|+.++.||
T Consensus       467 t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          467 TAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             ETTTEEEEECTTSEEEEEE
T ss_pred             eCCCEEEEECCcccchhhh
Confidence            4677888899999999875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.41  E-value=0.00063  Score=59.14  Aligned_cols=206  Identities=9%  Similarity=-0.029  Sum_probs=120.3

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...|.++...+    ++.+ -.|+.++-|..|+..+..... +.           .... .-.-....|.++...+++. 
T Consensus       309 ~~~i~~i~~D~----~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~-----------~~~~-~~~l~~~~V~~i~~d~~g~-  369 (795)
T 4a2l_A          309 QRSVRSIFMDS----QGGM-WLGTYFGGLNYYHPIRNRFKN-IR-----------NIPY-KNSLSDNVVSCIVEDKDKN-  369 (795)
T ss_dssp             SSCEEEEEECT----TSCE-EEEESSSCEEEECGGGGSSEE-EC-----------CCTT-SSSCSCSSEEEEEECTTSC-
T ss_pred             CCcEEEEEEeC----CcCE-EEEECCCCeEEeCCCcccceE-Ec-----------CCCC-CCCCCCCeeEEEEECCCCC-
Confidence            35789998888    6664 456666678888876421100 00           0000 0001235689998888775 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                        |..|..++-|..|+..+..    ...+......       ..      .......|.++...+++..|.+|+.++-|.
T Consensus       370 --lWiGt~~~Gl~~~~~~~~~----~~~~~~~~~~-------~~------~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~  430 (795)
T 4a2l_A          370 --LWIGTNDGGLNLYNPITQR----FTSYTLQEDE-------SA------RGIGSNNIKAVYVDEKKSLVYIGTHAGGLS  430 (795)
T ss_dssp             --EEEEESSSCEEEECTTTCC----EEEECCC-------------------CCSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             --EEEEECCCCeEEEcCCCCc----EEEEecCCCC-------cc------cCCCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence              6667777779999865321    1111100000       00      000012378888888877577788777799


Q ss_pred             EEecCCCcEEEEee----cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          185 CWDVESSRIKMVFK----GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       185 i~d~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      .||..+++...-..    .....|.++...+++++.+... +| |.+||..+++...........  .-....|.++..+
T Consensus       431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~d  506 (795)
T 4a2l_A          431 ILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKEKDGT--PVVSKQITTLFRD  506 (795)
T ss_dssp             EEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBCTTCC--BCCCCCEEEEEEC
T ss_pred             EEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccccccc--ccCCceEEEEEEC
Confidence            99998776544321    1345789999888887666544 44 888998876554322110000  1123568899999


Q ss_pred             CCCCEEEEEcCcc
Q 023643          261 ASESWLVRVRATN  273 (279)
Q Consensus       261 ~~~~~l~~~~~d~  273 (279)
                      ++|.+.+... +|
T Consensus       507 ~~g~lWigt~-~G  518 (795)
T 4a2l_A          507 SHKRLWIGGE-EG  518 (795)
T ss_dssp             TTCCEEEEES-SC
T ss_pred             CCCCEEEEeC-Cc
Confidence            9988766554 44

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.39  E-value=0.00033  Score=56.17  Aligned_cols=160  Identities=11%  Similarity=0.114  Sum_probs=92.7

Q ss_pred             CeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           92 PAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        92 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ....+++.| ++.  ++++-..++.|+.++..+.......... +.              .+        .-..++|+|+
T Consensus       229 ~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~--------------~~--------~~~~ia~dpd  283 (433)
T 4hw6_A          229 GAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMM-DT--------------KG--------SNFHIVWHPT  283 (433)
T ss_dssp             SBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEEC-SC--------------CS--------SCEEEEECTT
T ss_pred             CCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEecc-CC--------------CC--------CcccEEEeCC
Confidence            345678888 554  5556666788888886532110000000 00              00        1246999999


Q ss_pred             CCeEEEe-cCCCeEEEEecC--CCcE--EEEeecC---------------CcceEEEEE---------cCCCcEEEEecC
Q 023643          171 GGAIFSA-AGDSCAYCWDVE--SSRI--KMVFKGH---------------SDYLHCIVA---------RNSTNQIVTGSE  221 (279)
Q Consensus       171 ~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~---------------~~~i~~i~~---------~~~~~~l~~~~~  221 (279)
                      ++.|+.+ ...+.|+.++..  ++..  ...+.+.               -.....+++         .++++++++-..
T Consensus       284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            9955554 556889998865  2321  1122111               123677999         777888888888


Q ss_pred             CCeEEEEeCCCCceEEEecCCcc----------ccccCcceeeeEEEEc-CCCCEEEEEcCcceEEeC
Q 023643          222 DGTARIWDCKSGKCIKVIDPVKD----------KQLKGVISCVSCITLD-ASESWLVRVRATNYVILF  278 (279)
Q Consensus       222 d~~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~w  278 (279)
                      .+.|+.++. +|... ++.....          ......-..-..++++ +++.++++=..++.|+.+
T Consensus       364 n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          364 SHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             TTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            899999985 56443 3321100          0000111236789999 677777776777778764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.38  E-value=0.0002  Score=57.40  Aligned_cols=118  Identities=10%  Similarity=0.046  Sum_probs=70.5

Q ss_pred             ceeEEEcC-CCCeEEEecCCCeEEEEecCCCcEEEEe-ec-CCcceEEEEEcCCCc-EEEEecCCCeEEEEeCC--CCce
Q 023643          162 NNAIAVDP-QGGAIFSAAGDSCAYCWDVESSRIKMVF-KG-HSDYLHCIVARNSTN-QIVTGSEDGTARIWDCK--SGKC  235 (279)
Q Consensus       162 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~-~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~--~~~~  235 (279)
                      ...++++| ++.++++-..++.|+.+|..++.....+ .. .......++++|+++ ++++-...+.|+.+++.  ++..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~  309 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL  309 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence            36789999 5555555556789999999877663332 21 122335799999998 55666677889998765  3322


Q ss_pred             E--EEecCC-ccccc------cCcceeeeEEEE---------cCCCCEEEEEcCcceEEeCC
Q 023643          236 I--KVIDPV-KDKQL------KGVISCVSCITL---------DASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~--~~~~~~-~~~~~------~~~~~~v~~~~~---------~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .  ..+... ....+      ...-..-..+++         .+++.++++-...+.|+.++
T Consensus       310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            1  122110 00000      011123567888         77777777777777777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=0.00056  Score=54.30  Aligned_cols=168  Identities=13%  Similarity=0.008  Sum_probs=98.1

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ....+..++|++.   ++.++.+-...+.|+.+++......               ......+.........+++.+.+.
T Consensus       110 ~~~~~~~l~~d~~---~~~lywsD~~~~~I~~~~~~g~~~~---------------~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L          110 NLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGV---------------SSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             SCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC---------------------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ccCcceEEeeeec---cCceEEEecCCCeEEEEEcccCCCC---------------CcceEEEeCCCCCcccEEEEecCC
Confidence            3457889999982   4455555566788888888652100               001111222234567888887444


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CC
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DS  181 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~  181 (279)
                       ++.++-...+.|.+.+++... ....  ....            .          .....|+++|.+..|+....  .+
T Consensus       172 -~lY~~d~~~~~I~~~~~~g~~-~~~l--~~~~------------~----------~~P~~iavdp~~g~ly~td~~~~~  225 (400)
T 3p5b_L          172 -NIYWTDSVLGTVSVADTKGVK-RKTL--FREN------------G----------SKPRAIVVDPVHGFMYWTDWGTPA  225 (400)
T ss_dssp             -EEEEEETTTTEEEEECTTTCS-EEEE--EECS------------S----------CCEEEEEEETTTTEEEEEECSSSC
T ss_pred             -ceEEEECCCCeEEEEeCCCCc-eEEE--EeCC------------C----------CCcceEEEecccCeEEEEeCCCCC
Confidence             255666667888888865211 0011  1100            0          01478999997776665542  36


Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCce
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~  235 (279)
                      .|...++............-.....|++++++..| ++-...+.|..+|+.....
T Consensus       226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            88888887443333333334567899999865554 5556678899999865433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00032  Score=56.27  Aligned_cols=154  Identities=10%  Similarity=0.065  Sum_probs=89.6

Q ss_pred             ceEEEEECC-CCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           27 TVFRTVWGP-SKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        27 ~v~~~~~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ....|+++| .   ++.++++ ...+.|+.+|+...                   . +..+.........|+|.++++  
T Consensus       138 ~P~~lavdp~~---~g~Lyv~-d~~~~I~~id~~~~-------------------~-v~~~~~~~~~P~~ia~d~~G~--  191 (430)
T 3tc9_A          138 GAVWLSFDPKN---HNHLYLV-GEQHPTRLIDFEKE-------------------Y-VSTVYSGLSKVRTICWTHEAD--  191 (430)
T ss_dssp             CCCEEEEETTE---EEEEEEE-EBTEEEEEEETTTT-------------------E-EEEEECCCSCEEEEEECTTSS--
T ss_pred             CCCEEEECCCC---CCeEEEE-eCCCcEEEEECCCC-------------------E-EEEEecCCCCcceEEEeCCCC--
Confidence            346778886 1   2444444 33378888888752                   1 122222345578999999987  


Q ss_pred             EEEEeeC-CC----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC-CCCeEEEecC
Q 023643          106 LLLSCGD-DG----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP-QGGAIFSAAG  179 (279)
Q Consensus       106 ~l~s~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  179 (279)
                      +|+.+.. ++    .+...+.. . ......           .+..  .          .....++++| ++.++++-..
T Consensus       192 ~lyvad~~~~~~~~~v~~~~~~-g-~~~~~~-----------~l~~--~----------~~p~giavdp~~g~lyv~d~~  246 (430)
T 3tc9_A          192 SMIITNDQNNNDRPNNYILTRE-S-GFKVIT-----------ELTK--G----------QNCNGAETHPINGELYFNSWN  246 (430)
T ss_dssp             EEEEEECCSCTTSEEEEEEEGG-G-TSCSEE-----------EEEE--C----------SSCCCEEECTTTCCEEEEETT
T ss_pred             EEEEEeCCCCcccceEEEEeCC-C-ceeeee-----------eecc--C----------CCceEEEEeCCCCEEEEEECC
Confidence            5655544 22    23333321 1 000000           0000  0          0146889999 6665666666


Q ss_pred             CCeEEEEecCCCcEEEEeec-CCcceEEEEEcCCCc-EEEEecCCCeEEEEeCC
Q 023643          180 DSCAYCWDVESSRIKMVFKG-HSDYLHCIVARNSTN-QIVTGSEDGTARIWDCK  231 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~  231 (279)
                      ++.|..+|...+........ .......++|+|+++ ++++-...+.|..++..
T Consensus       247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            78999999987654332222 224578999999999 55666678889998765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.31  E-value=2.9e-05  Score=62.30  Aligned_cols=150  Identities=10%  Similarity=0.053  Sum_probs=89.1

Q ss_pred             CeEEEEecC-CCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           92 PAYDVKFYG-GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        92 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ....|+++| ++.  .|..+...+.|+.+|+....    ...+....                      .....++++++
T Consensus       138 ~P~~lavdp~~~g--~Lyv~d~~~~I~~id~~~~~----v~~~~~~~----------------------~~P~~ia~d~~  189 (430)
T 3tc9_A          138 GAVWLSFDPKNHN--HLYLVGEQHPTRLIDFEKEY----VSTVYSGL----------------------SKVRTICWTHE  189 (430)
T ss_dssp             CCCEEEEETTEEE--EEEEEEBTEEEEEEETTTTE----EEEEECCC----------------------SCEEEEEECTT
T ss_pred             CCCEEEECCCCCC--eEEEEeCCCcEEEEECCCCE----EEEEecCC----------------------CCcceEEEeCC
Confidence            456788998 343  55555555788888865321    11111100                      02478999999


Q ss_pred             CCeEEEecCC-----CeEEEEecCCCcEE--EEeecCCcceEEEEEcC-CCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          171 GGAIFSAAGD-----SCAYCWDVESSRIK--MVFKGHSDYLHCIVARN-STNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       171 ~~~l~~~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      ++.|+++...     ..+..++.. +...  ..+.. ......++++| ++.++++-..++.|..++...+.......  
T Consensus       190 G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~--  265 (430)
T 3tc9_A          190 ADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT--  265 (430)
T ss_dssp             SSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred             CCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE--
Confidence            9966666541     134444433 3221  22221 23456788999 78878887788999999988665422221  


Q ss_pred             ccccccCcceeeeEEEEcCCCCEEE-EEcCcceEEeC
Q 023643          243 KDKQLKGVISCVSCITLDASESWLV-RVRATNYVILF  278 (279)
Q Consensus       243 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~w  278 (279)
                           ......-..++|+|++++|+ +-...+.|..+
T Consensus       266 -----~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          266 -----IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             -----CSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             -----cCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence                 11123457899999999544 44556677664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.29  E-value=4.4e-05  Score=65.81  Aligned_cols=113  Identities=17%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             CeEEEEec-CCCCceEEEEe-eCCC----cEEEeecCCC-ccCcceeeeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           92 PAYDVKFY-GGNEDALLLSC-GDDG----RICGWRWKEF-TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        92 ~v~~~~~~-~~~~~~~l~s~-~~dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      .+...+|+ |+++  +|+-+ +.+|    .|+++|+.+. ...  ...+..                         ....
T Consensus       175 ~~~~~~~S~PDG~--~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~~-------------------------~~~~  225 (751)
T 2xe4_A          175 DVMEVKPAPPEHD--LVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVSG-------------------------TNGE  225 (751)
T ss_dssp             EEEEEEECTTTTC--EEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEEE-------------------------ECSC
T ss_pred             EEeeeEecCCCCC--EEEEEEeCCCCceEEEEEEECCCCCEeC--CccccC-------------------------ceee
Confidence            57889999 9998  66633 3333    4999998754 210  000000                         0246


Q ss_pred             EEEcCCCCeEEEecCC-----CeEEEEecCCCc--EEEEeec-CCcceEEEEEcCCCcEEEEec---CCCeEEEEeCCCC
Q 023643          165 IAVDPQGGAIFSAAGD-----SCAYCWDVESSR--IKMVFKG-HSDYLHCIVARNSTNQIVTGS---EDGTARIWDCKSG  233 (279)
Q Consensus       165 ~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~--~~~~~~~-~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~  233 (279)
                      +.|+||++.|+....+     ..|+.+++.++.  ....+.. .......+.|+|||++|+..+   ....|.++|+.++
T Consensus       226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            7899999877666544     368888887753  2233332 234456789999999887655   3446888998875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.29  E-value=0.00075  Score=53.28  Aligned_cols=155  Identities=12%  Similarity=0.027  Sum_probs=91.3

Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ..+..++|.+.+. .++++-...+.|..++++...   ........            ..          ....+++++.
T Consensus       116 ~~~~gl~~d~~~~-~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~------------~~----------~p~glavd~~  169 (386)
T 3v65_B          116 ENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSN---VEEVVSTG------------LE----------SPGGLAVDWV  169 (386)
T ss_dssp             SCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCC---EEEEECSS------------CS----------CCCCEEEETT
T ss_pred             CccEEEEEecCCC-eEEEEeCCCCcEEEEecCCCC---cEEEEeCC------------CC----------CccEEEEEeC
Confidence            4578999998665 255555667888888875321   00000000            00          1367888875


Q ss_pred             CCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCC-CeEEEEeCCCCceEEEecCCccccc
Q 023643          171 GGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSED-GTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       171 ~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                      +..| ++-...+.|.+.++........+.........++++|.+.. +++-... +.|..+++........+        
T Consensus       170 ~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------  241 (386)
T 3v65_B          170 HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------  241 (386)
T ss_dssp             TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------
T ss_pred             CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--------
Confidence            5544 45555778999998754433334334456789999986554 4444444 78888887643333222        


Q ss_pred             cCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643          248 KGVISCVSCITLDASESWLVRV-RATNYVILFS  279 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd  279 (279)
                      ...-.....++|+|++..|+.+ +..+.|..+|
T Consensus       242 ~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          242 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            1122345789999866555544 4556666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.29  E-value=0.00079  Score=53.43  Aligned_cols=160  Identities=11%  Similarity=0.031  Sum_probs=92.2

Q ss_pred             CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643           89 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus        89 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      ....+..|+|.+... .++++-...+.|+.++++................                     .....++++
T Consensus       110 ~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------------------~~p~glavD  167 (400)
T 3p5b_L          110 NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------------------QAPDGLAVD  167 (400)
T ss_dssp             SCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC------CCCEEEECSSC---------------------SCEEEEEEE
T ss_pred             ccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC---------------------CCcccEEEE
Confidence            345688999998665 2445555678888888753210000001100000                     124688998


Q ss_pred             CCCC-eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec-C-CCeEEEEeCCCCceEEEecCCccc
Q 023643          169 PQGG-AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS-E-DGTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       169 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      +.+. ++++-...+.|.+.++........+.........|+++|.+.+|+... . .+.|...++........+      
T Consensus       168 ~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~------  241 (400)
T 3p5b_L          168 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------  241 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE------
T ss_pred             ecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE------
Confidence            8544 445555678999999886554444444445678999999655544433 2 478888887643333332      


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643          246 QLKGVISCVSCITLDASESWLVRV-RATNYVILF  278 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  278 (279)
                        ...-.....+++++++..|+.+ +..+.|..+
T Consensus       242 --~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~  273 (400)
T 3p5b_L          242 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  273 (400)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             --ECCCCceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence              1222356789999877666655 344555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.29  E-value=0.00016  Score=60.31  Aligned_cols=62  Identities=11%  Similarity=0.055  Sum_probs=45.5

Q ss_pred             CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          179 GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       179 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      ..|.|.-||+.+++.+.+.+.. .+...-.....+..++.++.|+.|+.||.++|+.+.+++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            3578999999999988877522 1111111223467788899999999999999999998854

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.28  E-value=4.3e-05  Score=63.57  Aligned_cols=102  Identities=14%  Similarity=0.070  Sum_probs=67.7

Q ss_pred             CCCC---eEEEecCCCeEEEEecCCCcEEEEeecCC-------------cce--------------------------EE
Q 023643          169 PQGG---AIFSAAGDSCAYCWDVESSRIKMVFKGHS-------------DYL--------------------------HC  206 (279)
Q Consensus       169 ~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~i--------------------------~~  206 (279)
                      ++++   .++.++.+|.++++|..+++.+..++...             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4563   57778889999999999999887664321             111                          23


Q ss_pred             EEEcCCCcEEEEec-------------------------------------CCCeEEEEeCCCCceEEEecCCccccccC
Q 023643          207 IVARNSTNQIVTGS-------------------------------------EDGTARIWDCKSGKCIKVIDPVKDKQLKG  249 (279)
Q Consensus       207 i~~~~~~~~l~~~~-------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  249 (279)
                      ++++|+..+++..+                                     .+|.|..||+.+++.+.++...       
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-------  463 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-------  463 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-------
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-------
Confidence            57778766655542                                     3578999999999988877421       


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                        ..+.+..+...+..++.++.||.++.||
T Consensus       464 --~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          464 --FAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             --SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             --CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence              1112222222356677788899988875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.28  E-value=0.0015  Score=56.35  Aligned_cols=169  Identities=13%  Similarity=-0.001  Sum_probs=98.8

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...+.+|+|.+.   ++.++++-...+.|+.+++......               ......+.........|++.+.+. 
T Consensus       423 ~~~~~gl~~d~~---~~~lY~sD~~~~~I~~~~l~g~~~~---------------~~~~~vi~~~l~~P~GLAvD~~~~-  483 (791)
T 3m0c_C          423 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGV---------------SSYDTVISRDIQAPDGLAVDWIHS-  483 (791)
T ss_dssp             CSSEEEEEEETT---TTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTT-
T ss_pred             CCceEEEeeccc---CCeeEEeeccceeEEEEeccCCCCC---------------cceeEEEecCCCCcceeeeeecCC-
Confidence            456778999882   4555566666788888888752100               011112222234456788887665 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC  182 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~  182 (279)
                      +++++-...+.|.+.+++.. ....+  .....                      .....|+++|....|+....  .+.
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~-~~~~l--~~~~l----------------------~~P~gIaVDp~~g~LYwtD~g~~~~  538 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGV-KRKTL--FRENG----------------------SKPRAIVVDPVHGFMYWTDWGTPAK  538 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSS-SEEEE--EECTT----------------------CCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             cEEEEecCCCeEEEEeCCCC-eEEEE--EeCCC----------------------CCcceEEEecCCCCEEEecCCCCCe
Confidence            36666667788999887521 11111  10000                      01478999998666666543  368


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEE
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      |...++........+...-.....|++++.+. ++++-...+.|..+++.......
T Consensus       539 I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~  594 (791)
T 3m0c_C          539 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  594 (791)
T ss_dssp             EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence            99999874444333333446788999997654 44555567789999986444333

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.0011  Score=57.44  Aligned_cols=199  Identities=9%  Similarity=0.006  Sum_probs=116.6

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...|.++...+    ++.+ -.|+.++-|..|+..+.....              .  ...-......|.++...+++. 
T Consensus       362 ~~~v~~i~~d~----~g~l-Wigt~~~Gl~~~~~~~~~~~~--------------~--~~~~~~~~~~v~~i~~d~~g~-  419 (781)
T 3v9f_A          362 NKVVSSVCDDG----QGKL-WIGTDGGGINVFENGKRVAIY--------------N--KENRELLSNSVLCSLKDSEGN-  419 (781)
T ss_dssp             SSCEEEEEECT----TSCE-EEEEBSSCEEEEETTEEEEEC--------------C-------CCCSBEEEEEECTTSC-
T ss_pred             CcceEEEEEcC----CCCE-EEEeCCCcEEEEECCCCeEEE--------------c--cCCCCCCCcceEEEEECCCCC-
Confidence            35688888887    6664 455655568888876521000              0  000012345688988887775 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                        |..|..++-+..++.++..    ...+...                   ......|.++...+++. |..|+. +-|.
T Consensus       420 --lWigt~~~Gl~~~~~~~~~----~~~~~~~-------------------~~~~~~v~~i~~d~~g~-lwigt~-~Gl~  472 (781)
T 3v9f_A          420 --LWFGTYLGNISYYNTRLKK----FQIIELE-------------------KNELLDVRVFYEDKNKK-IWIGTH-AGVF  472 (781)
T ss_dssp             --EEEEETTEEEEEECSSSCE----EEECCST-------------------TTCCCCEEEEEECTTSE-EEEEET-TEEE
T ss_pred             --EEEEeccCCEEEEcCCCCc----EEEeccC-------------------CCCCCeEEEEEECCCCC-EEEEEC-CceE
Confidence              5556766778888864321    1111000                   00112378888887765 445555 5588


Q ss_pred             EEecCCCcEEEEeecC-----CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          185 CWDVESSRIKMVFKGH-----SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       185 i~d~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      .||..+++........     ...|.++...++|++.+.....| |..||..+++.. .+....    .-....|.++..
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~----~l~~~~i~~i~~  546 (781)
T 3v9f_A          473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYE----GFCSNTINQIYR  546 (781)
T ss_dssp             EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTT----TCSCSCEEEEEE
T ss_pred             EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCC----CCCCCeeEEEEE
Confidence            9998876544332212     36789999988887666544355 777887766543 332211    112356889999


Q ss_pred             cCCCCEEEEEcCcceEEeCC
Q 023643          260 DASESWLVRVRATNYVILFS  279 (279)
Q Consensus       260 ~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++|.+.++.. +|.+..||
T Consensus       547 d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          547 SSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             CTTSCEEEEET-TEEEEESC
T ss_pred             CCCCCEEEEEC-CCceEEEC
Confidence            99988666654 67646554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.25  E-value=0.0004  Score=53.28  Aligned_cols=199  Identities=12%  Similarity=0.131  Sum_probs=111.8

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCC---EEEEec-C--CCcEEEEeCCCCCcccccccCCcccce
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPD---TIVIAS-S--DGSITSYSIPSCISKLPLGLSNSKVQQ   76 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~-~--dg~i~iw~~~~~~~~~~~~~~~~~~~~   76 (279)
                      +-+.+||+++.   .+..+..  +.+..+..-|...-.+.   ++++.. .  +++|++|++......            
T Consensus        50 ~gL~Vydl~G~---~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~------------  112 (355)
T 3amr_A           50 SGLVVYSLDGK---MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT------------  112 (355)
T ss_dssp             TEEEEEETTSC---EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC------------
T ss_pred             CCEEEEcCCCc---EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc------------
Confidence            55788998764   3444432  45666665551100122   233333 3  578999977421100            


Q ss_pred             eeecccccc----ccCCccCeEEEEe--cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           77 LLGIEPDGF----LHGHDGPAYDVKF--YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        77 ~~~~~~~~~----~~~h~~~v~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                         ...+..    +..-...+..+|+  +|.....+++....+|.+..|++..........       ..+..+...   
T Consensus       113 ---l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~-------~lVR~f~lg---  179 (355)
T 3amr_A          113 ---LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG-------KKVRAFKMN---  179 (355)
T ss_dssp             ---EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE-------EEEEEEECS---
T ss_pred             ---eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc-------eEEEEecCC---
Confidence               001100    1011145667777  664432468888889999999985422111100       111111111   


Q ss_pred             CccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecC-----CCcEEEEee-cC-CcceEEEEEc--CCCc-EEEEec
Q 023643          151 GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE-----SSRIKMVFK-GH-SDYLHCIVAR--NSTN-QIVTGS  220 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~-~~-~~~i~~i~~~--~~~~-~l~~~~  220 (279)
                               .++..+...+....|+++-.+.-|..+|.+     +++.+..+. ++ ...+..|++-  ++++ +|++++
T Consensus       180 ---------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          180 ---------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             ---------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             ---------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence                     125788889888899999988777777755     345555442 22 2357788774  4444 555554


Q ss_pred             -CCCeEEEEeCC-CCceEEEec
Q 023643          221 -EDGTARIWDCK-SGKCIKVID  240 (279)
Q Consensus       221 -~d~~i~vwd~~-~~~~~~~~~  240 (279)
                       .+++..+||.. +.+.+..+.
T Consensus       251 QG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          251 QGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             GGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCCCEEEEEECCCCCcEEEEEE
Confidence             67899999996 677777774

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.24  E-value=0.0008  Score=51.56  Aligned_cols=159  Identities=14%  Similarity=0.039  Sum_probs=90.9

Q ss_pred             ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643           90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP  169 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  169 (279)
                      ...+.+++|.+.+. .++++-...+.|..++++.............           ...          .....+++++
T Consensus        29 ~~~p~g~~~d~~~~-~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-----------~~~----------~~p~glavd~   86 (316)
T 1ijq_A           29 LRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----------RDI----------QAPDGLAVDW   86 (316)
T ss_dssp             CSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEEC-----------SSC----------SCCCEEEEET
T ss_pred             CCceEEEEEEeCCC-EEEEEECCCCcEEEEECCCCCCCcccEEEEe-----------CCC----------CCcCEEEEee
Confidence            34578999998765 2555656678899998753100000000000           000          0146889987


Q ss_pred             CCCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCC-CeEEEEeCCCCceEEEecCCcccc
Q 023643          170 QGGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSED-GTARIWDCKSGKCIKVIDPVKDKQ  246 (279)
Q Consensus       170 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~  246 (279)
                      .+..| ++-...+.|.++|+........+.........++++|.+..| ++.... +.|...++. |.....+.      
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~------  159 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV------  159 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE------
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE------
Confidence            55555 444667899999987544433333344567899999965544 444333 788888875 44333331      


Q ss_pred             ccCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643          247 LKGVISCVSCITLDASESWLVRV-RATNYVILF  278 (279)
Q Consensus       247 ~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  278 (279)
                       ...-.....++++|++..|+.+ +..+.|..+
T Consensus       160 -~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~  191 (316)
T 1ijq_A          160 -TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (316)
T ss_dssp             -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             -ECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence             1122356789999876665544 445566554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.23  E-value=0.0008  Score=51.20  Aligned_cols=169  Identities=9%  Similarity=0.026  Sum_probs=98.3

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC------CccCeEEEEe---
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG------HDGPAYDVKF---   98 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~---   98 (279)
                      -.+++|.+.   ++.++++.-..++|..|+...+..                 ..+ .+.+      ....+..|.|   
T Consensus        15 PE~~~wd~~---~g~~~vs~l~~g~V~~~~~~~~~~-----------------~~~-~~~~~s~~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A           15 PEDTIYDRT---RQVFYQSNLYKGRIEVYNPKTQSH-----------------FNV-VIDGASSNGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             CSCEEEETT---TTEEEEEETTTTEEEEECTTTCCE-----------------EEE-CCTTTCCSSCCSEEEEEEEESSS
T ss_pred             CcCccCcCC---CCEEEEEeccCCEEEEEcCCCCeE-----------------EEE-ecCCccccCCCcceeeEEEEecc
Confidence            346789872   455555555899999999975311                 111 1211      1123578999   


Q ss_pred             cCCCCceEEEEee-------------CCCcEEEeecC---CCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           99 YGGNEDALLLSCG-------------DDGRICGWRWK---EFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        99 ~~~~~~~~l~s~~-------------~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      .|++.  ++++..             .+..|..+|+.   +.+. .....+...... +... +...         ....
T Consensus        74 D~~gr--L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~-~~~~-~g~~---------~~~~  139 (334)
T 2p9w_A           74 DNSKR--LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDE-FEKK-AGKR---------PFGV  139 (334)
T ss_dssp             SSCCE--EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHH-HHHH-HSSC---------CEEE
T ss_pred             CCCCc--EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE-EEEecCcccccc-cccc-cccc---------ccCC
Confidence            57754  555433             25778888976   3211 111111100000 0000 0000         0015


Q ss_pred             eeEEEcCCCCeEEEecCC-CeEEEEecCCCcEEEEee--c----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          163 NAIAVDPQGGAIFSAAGD-SCAYCWDVESSRIKMVFK--G----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~--~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      ..++..++|+..++++.- +.|...+.... .+..+.  .    .....+.|+++|+++.|++....|.|..+|+.+
T Consensus       140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          140 VQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             ceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            789999999988888877 88888887633 333221  1    112366899999998888776699999999884

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.22  E-value=0.00084  Score=51.47  Aligned_cols=155  Identities=15%  Similarity=0.072  Sum_probs=90.4

Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      .....+.|.+.+. .++.+-...+.|..++++.......... .+ -                      .....+++++.
T Consensus        35 ~~~~~ld~d~~~~-~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~~-l----------------------~~p~glavd~~   89 (318)
T 3sov_A           35 EDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESVQNVVV-SG-L----------------------LSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEEEGGGT-EEEEEETTTTEEEEEETTSSSCCCEEEE-EC-C----------------------SCCCEEEEETT
T ss_pred             CccEEEEEEeCCC-EEEEEECCCCcEEEEEccCCCceEEEEc-CC-C----------------------CCccEEEEEcC
Confidence            3467899998655 2555656678888888754311111111 00 0                      01367889875


Q ss_pred             CCeE-EEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec--CCCeEEEEeCCCCceEEEecCCccccc
Q 023643          171 GGAI-FSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS--EDGTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       171 ~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                      +..| ++-...+.|.++++........+.........++++|.+..|+...  ..+.|...++.. .....+-       
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~-------  161 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIII-------  161 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEE-------
T ss_pred             CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEE-------
Confidence            5544 5555678999999875433333333445678999998655544443  357888888753 3333331       


Q ss_pred             cCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643          248 KGVISCVSCITLDASESWLVRV-RATNYVILF  278 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  278 (279)
                      ...-..-..++++|++..|+.+ +..+.|..+
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            1112345789999866655544 445566544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.20  E-value=0.00023  Score=59.37  Aligned_cols=61  Identities=26%  Similarity=0.265  Sum_probs=46.0

Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      +|.|.-||+.+++.+.+..... ++..-.....+.+++.++.|+.++.||.++|+.+.+++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            6889999999999988776432 221111222467788899999999999999999998864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.20  E-value=2.5e-05  Score=66.58  Aligned_cols=163  Identities=13%  Similarity=0.002  Sum_probs=89.9

Q ss_pred             cceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ..+..++|.+    ....|..+ ...+.|+.+++......               ......+.........|++.+.+. 
T Consensus       406 ~~p~gla~d~----~~~~Ly~sD~~~~~I~~~~~~g~~~~---------------~~~~~~i~~~~~~P~glavD~~~g-  465 (699)
T 1n7d_A          406 RNVVALDTEV----ASNRIYWSDLSQRMICSTQLDRAHGV---------------SSYDTVISRDIQAPDGLAVDWIHS-  465 (699)
T ss_dssp             TTCCCCEEET----TTTEEEECCTTTTSBEEEESCCCCC----------------CCCCCBCCSCC--CCCEECCCSSS-
T ss_pred             cceEEEcccc----ccCeEEEEecCCCeEEEEecCCCCCC---------------cceEEEEeCCCCCcceEEEEeeCC-
Confidence            4566788988    45555444 45678988888751000               001111111112345677775443 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCe
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSC  182 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~  182 (279)
                      .++++-...+.|.+.+++..    ....+....           .          .....|+++|.+..|+.+..  .+.
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~----~~~~l~~~~-----------~----------~~P~giavDp~~g~ly~td~~~~~~  520 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGV----KRKTLFREQ-----------G----------SKPRAIVVDPVHGFMYWTDWGTPAK  520 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSC----CEEEECCCS-----------S----------CCCCCEECCSSSSCCEECCCSSSCC
T ss_pred             cEEEEeccCCeEEEEecCCC----ceEEEEeCC-----------C----------CCcceEEEccCCCcEEEcccCCCCe
Confidence            25555566788888886521    111111000           0          01368899997666665543  267


Q ss_pred             EEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCC
Q 023643          183 AYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      |..+++........+...-.....|+++|+ ++++++-+..+.|.++++...
T Consensus       521 I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          521 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             EEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             EEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            888877533222222222345678999986 556666677889999998643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.19  E-value=0.00025  Score=53.91  Aligned_cols=165  Identities=13%  Similarity=0.075  Sum_probs=103.4

Q ss_pred             ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeeccCc--ccceEEeecCCCCCccccCCCCCCceeEE
Q 023643           90 DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQGNH--VKPVLDLVNHQHKGPWGALSPVPENNAIA  166 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  166 (279)
                      .-...+++|.+...  .|..++ ..++|..|+......  ....+.+-.  ..                  +...+..|.
T Consensus        12 ~~yPE~~~wd~~~g--~~~vs~l~~g~V~~~~~~~~~~--~~~~~~~~s~~g~------------------~~~~~sGl~   69 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQ--VFYQSNLYKGRIEVYNPKTQSH--FNVVIDGASSNGD------------------GEQQMSGLS   69 (334)
T ss_dssp             TCCCSCEEEETTTT--EEEEEETTTTEEEEECTTTCCE--EEECCTTTCCSSC------------------CSEEEEEEE
T ss_pred             ccCCcCccCcCCCC--EEEEEeccCCEEEEEcCCCCeE--EEEecCCccccCC------------------CcceeeEEE
Confidence            33455788988665  555555 789999999753211  111111100  00                  000247889


Q ss_pred             E---cCCCCeEEEec-------------CCCeEEEEecC---CCcEEEEee--cC-----------CcceEEEEEcCCCc
Q 023643          167 V---DPQGGAIFSAA-------------GDSCAYCWDVE---SSRIKMVFK--GH-----------SDYLHCIVARNSTN  214 (279)
Q Consensus       167 ~---~~~~~~l~~~~-------------~d~~i~i~d~~---~~~~~~~~~--~~-----------~~~i~~i~~~~~~~  214 (279)
                      |   .|+++++++..             .+..+..||+.   +++.+....  ..           ......|+..++|+
T Consensus        70 ~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn  149 (334)
T 2p9w_A           70 LLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN  149 (334)
T ss_dssp             ESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred             EeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence            9   68876666543             26789999999   777665443  11           12478999999999


Q ss_pred             EEEEecCC-CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          215 QIVTGSED-GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       215 ~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..++++.- +.|...+.. |+.+..+.....  ........+.|+++|+|..|++....|.+..+|
T Consensus       150 aYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          150 SYVAFALGMPAIARVSAD-GKTVSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             EEEEEEESSCEEEEECTT-SCCEEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             EEEeCCCCCCeEEEEeCC-CCEEeeeeecCC--CcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            99999888 888877754 443333311110  012234578999999999988887788776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.0027  Score=55.06  Aligned_cols=204  Identities=12%  Similarity=0.032  Sum_probs=117.2

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCc
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  104 (279)
                      ...|.++...+    ++. |-.|+.++-|..++..+..... +...+.       ......+  ....|.++...+++. 
T Consensus       312 ~~~v~~i~~D~----~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~-------~~~~~~l--~~~~v~~i~~d~~g~-  375 (781)
T 3v9f_A          312 NASARYIFQDS----FNN-IWIGTWGGGINFISNAPPTFHT-WSYSPT-------QMNESSL--SNKVVSSVCDDGQGK-  375 (781)
T ss_dssp             SSCEEEEEECS----SCC-EEEEEBSSCEEEECSSCCSCEE-EC-----------CCCSSCC--SSSCEEEEEECTTSC-
T ss_pred             CCeEEEEEEeC----CCC-EEEEecCCeEEEeCCCCCccee-eccCcc-------ccccCCC--CCcceEEEEEcCCCC-
Confidence            45789998888    666 4556666668888877532110 000000       0000011  235688998888775 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY  184 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  184 (279)
                        |..|..++-|..++.....    ...+....                  ......|.++...+++. |.+|+.++-+.
T Consensus       376 --lWigt~~~Gl~~~~~~~~~----~~~~~~~~------------------~~~~~~v~~i~~d~~g~-lWigt~~~Gl~  430 (781)
T 3v9f_A          376 --LWIGTDGGGINVFENGKRV----AIYNKENR------------------ELLSNSVLCSLKDSEGN-LWFGTYLGNIS  430 (781)
T ss_dssp             --EEEEEBSSCEEEEETTEEE----EECC-----------------------CCCSBEEEEEECTTSC-EEEEETTEEEE
T ss_pred             --EEEEeCCCcEEEEECCCCe----EEEccCCC------------------CCCCcceEEEEECCCCC-EEEEeccCCEE
Confidence              6666666678888864311    00000000                  00112378888887765 55577767799


Q ss_pred             EEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          185 CWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       185 i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      .+|..+++......  .....|.++...+++.+.+.. . +-|..||..+++......... .  ......|.++..+++
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~i~~d~~  505 (781)
T 3v9f_A          431 YYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSN-S--QLLENFVRSIAQDSE  505 (781)
T ss_dssp             EECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTT-S--SCSCSCEEEEEECTT
T ss_pred             EEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcc-c--ccccceeEEEEEcCC
Confidence            99987765443221  134678999888887755544 4 458889988766544332110 0  112357889999999


Q ss_pred             CCEEEEEcCcce
Q 023643          263 ESWLVRVRATNY  274 (279)
Q Consensus       263 ~~~l~~~~~d~~  274 (279)
                      |.+.+....+|.
T Consensus       506 g~lWigt~~~Gl  517 (781)
T 3v9f_A          506 GRFWIGTFGGGV  517 (781)
T ss_dssp             CCEEEEESSSCE
T ss_pred             CCEEEEEcCCCE
Confidence            887666544553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.15  E-value=0.00012  Score=62.08  Aligned_cols=103  Identities=16%  Similarity=0.022  Sum_probs=61.8

Q ss_pred             eeEEEcC-CCCeEEEecCCC-----------eEEEEecCCCcEEEEe--ecCCcce-EEEEEcCCCcEEEEecCC-----
Q 023643          163 NAIAVDP-QGGAIFSAAGDS-----------CAYCWDVESSRIKMVF--KGHSDYL-HCIVARNSTNQIVTGSED-----  222 (279)
Q Consensus       163 ~~~~~~~-~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~~i-~~i~~~~~~~~l~~~~~d-----  222 (279)
                      .++.+.. ++++++.|+.++           .|.+||..+.+-....  ..+.... .+++..|+++.++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            3444443 566777776432           6888998776544432  1122222 344566899999999864     


Q ss_pred             ------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          223 ------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       223 ------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                            ..+.+||..+.+... +...     ........+..+.|+++.++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~-~~~~-----~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYK-QNPN-----SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEE-CCCC-----SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCceee-cCCC-----CCccccccHhhcCCCcEEEecCCC
Confidence                  468999998765443 2111     111122234556799999999985

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.15  E-value=0.00064  Score=50.08  Aligned_cols=167  Identities=10%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             ccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeE
Q 023643           86 LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAI  165 (279)
Q Consensus        86 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  165 (279)
                      +.+-.+.+..++|.|++. .++++...++.|...|+. .   .......-...                     .....|
T Consensus        22 l~g~~~~lSGla~~~~~~-~L~aV~d~~~~I~~ld~~-g---~v~~~i~l~g~---------------------~D~EGI   75 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSN-TLFSTINKPAAIVEMTTN-G---DLIRTIPLDFV---------------------KDLETI   75 (255)
T ss_dssp             CTTCCSCEEEEEEETTTT-EEEEEEETTEEEEEEETT-C---CEEEEEECSSC---------------------SSEEEE
T ss_pred             CCCcccCcceeEEeCCCC-EEEEEECCCCeEEEEeCC-C---CEEEEEecCCC---------------------CChHHe
Confidence            334445799999999865 355557778888888864 2   22222110000                     014688


Q ss_pred             EEcCCCCeEEEecCCCeEEEEecCCCcE---EEEee------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC---CC
Q 023643          166 AVDPQGGAIFSAAGDSCAYCWDVESSRI---KMVFK------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK---SG  233 (279)
Q Consensus       166 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~---~~  233 (279)
                      ++.+++.++++.-.++.+.++++.....   +....      ........++|+|.++.|.++.......+|.+.   ..
T Consensus        76 a~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~  155 (255)
T 3qqz_A           76 EYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS  155 (255)
T ss_dssp             EECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC
Confidence            8888887666666678899998765432   22222      123446899999998777777665555555543   11


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      ..+..+.... ..-..+...+.+++++|. +++++.......+..+|
T Consensus       156 ~~l~i~~~~~-~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d  201 (255)
T 3qqz_A          156 NELHISKDKA-LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVT  201 (255)
T ss_dssp             SCCEEEECHH-HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             Cceeeecchh-hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEc
Confidence            1222221100 000112235789999996 45555655666665544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.11  E-value=0.0031  Score=53.15  Aligned_cols=214  Identities=8%  Similarity=-0.064  Sum_probs=119.4

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      .|+.-++++........+. .-.....++|++.   ++.++.+-..++.|..++++...                   ..
T Consensus        16 ~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~---~~~lywtD~~~~~I~r~~~~g~~-------------------~~   72 (628)
T 4a0p_A           16 DIRRISLETNNNNVAIPLT-GVKEASALDFDVT---DNRIYWTDISLKTISRAFMNGSA-------------------LE   72 (628)
T ss_dssp             EEEEEESSCTTCEEECCCC-SCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CE
T ss_pred             cEEEEECCCCCcceEEEcC-CCCceEEEEEECC---CCEEEEEECCCCeEEEEECCCCC-------------------cE
Confidence            4555666554321111111 2346789999983   45555666678899988887521                   11


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCce
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENN  163 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  163 (279)
                      ..+..-......|++.+.+. ++.++-...+.|.+.+++.. ......  ...-                      ....
T Consensus        73 ~v~~~g~~~P~GlAvD~~~~-~LY~tD~~~~~I~v~~~dG~-~~~~l~--~~~l----------------------~~P~  126 (628)
T 4a0p_A           73 HVVEFGLDYPEGMAVDWLGK-NLYWADTGTNRIEVSKLDGQ-HRQVLV--WKDL----------------------DSPR  126 (628)
T ss_dssp             EEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTST-TCEEEE--CSSC----------------------CCEE
T ss_pred             EEEeCCCCCcceEEEEeCCC-EEEEEECCCCEEEEEecCCC-cEEEEE--eCCC----------------------CCcc
Confidence            11111123456788876554 35566666788888887521 111110  0100                      0147


Q ss_pred             eEEEcCCCCeEEEecC--CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-EEEEecCCCeEEEEeCCCCceEEEec
Q 023643          164 AIAVDPQGGAIFSAAG--DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-QIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|+++|....|+....  .+.|...++......... ..-.....|+++++++ ++++-...+.|..+|+..... ..+.
T Consensus       127 ~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~  204 (628)
T 4a0p_A          127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA  204 (628)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred             cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee
Confidence            8999996666666542  567888887644333323 3445678999999654 455556778899999865433 3331


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEe
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL  277 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  277 (279)
                              .......++++.. +..+.+-...+.|..
T Consensus       205 --------~~l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          205 --------DDLPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             --------ECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             --------ccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence                    1111234666654 444444444555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.06  E-value=0.0033  Score=52.91  Aligned_cols=183  Identities=10%  Similarity=-0.078  Sum_probs=102.1

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      ..|+.-++++...... ..........+++|++.   ++.++.+=...+.|..++++...                  ..
T Consensus        18 ~~I~~i~~~~~~~~~~-~~~~~~~~~~~ld~~~~---~~~ly~sD~~~~~I~r~~~~g~~------------------~~   75 (619)
T 3s94_A           18 RDLRLVDATNGKENAT-IVVGGLEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTE------------------SV   75 (619)
T ss_dssp             SBEEEECCC----------CBCCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC-----------------------C
T ss_pred             ccEEEEeCCCCcceEE-EEEcCCCceEEEEEEeC---CCEEEEEECCCCeEEEEEccCCC------------------ce
Confidence            4566667665321111 11222345789999982   44444555567788888887521                  01


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      ...+...-.....+++.+.+. +++++-...+.|.+.+++.. ......  ...-            .          ..
T Consensus        76 ~~v~~~~~~~P~GlAvD~~~~-~ly~~d~~~~~I~v~~~dG~-~~~~l~--~~~l------------~----------~P  129 (619)
T 3s94_A           76 QNVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDGS-LRKVLF--WQEL------------D----------QP  129 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEEE--CSSC------------S----------CC
T ss_pred             EEEEeCCCCCcCeEEEEecCC-EEEEEeCCCCEEEEEECCCC-CEEEEE--eCCC------------C----------CC
Confidence            112222224578899988655 35666667789999987531 111111  0100            0          13


Q ss_pred             eeEEEcCCCCeEEEecC--CCeEEEEecCCCcEEEEeecCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCC
Q 023643          163 NAIAVDPQGGAIFSAAG--DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      ..|+++|.+..|+....  .+.|...++............-.....|+++++ ++++++-...+.|..+|+...
T Consensus       130 ~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          130 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             CCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             ceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            68999997666665543  467777777633333333334456789999986 455555566788999998643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.98  E-value=0.0029  Score=49.09  Aligned_cols=98  Identities=11%  Similarity=0.077  Sum_probs=62.5

Q ss_pred             ceeEEEcCCCCeEEEec-----------------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEE-ecCCC
Q 023643          162 NNAIAVDPQGGAIFSAA-----------------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT-GSEDG  223 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~  223 (279)
                      .+.+.+.++|...++..                 ..|.|+.+|..  +.. .+...-...+.++|+|+++.|.. -+..+
T Consensus       167 pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~  243 (355)
T 3sre_A          167 VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAH  243 (355)
T ss_dssp             EEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             CceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCC
Confidence            58899999988666643                 13566666653  322 22223345689999999876554 45688


Q ss_pred             eEEEEeCCC-CceE--EEecCCccccccCcceeeeEEEEcC-CCCEEEEEcC
Q 023643          224 TARIWDCKS-GKCI--KVIDPVKDKQLKGVISCVSCITLDA-SESWLVRVRA  271 (279)
Q Consensus       224 ~i~vwd~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  271 (279)
                      .|..|++.. ++..  ..+.         .....-.+++++ +|++.+++..
T Consensus       244 ~I~~~~~~~~g~l~~~~~~~---------~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          244 KIHVYEKHANWTLTPLRVLS---------FDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             EEEEEEECTTSCEEEEEEEE---------CSSEEEEEEECTTTCCEEEEEES
T ss_pred             eEEEEEECCCCcEecCEEEe---------CCCCCceEEEeCCCCcEEEEecC
Confidence            999999863 3322  1221         124567788998 5888776643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=0.0066  Score=52.48  Aligned_cols=157  Identities=13%  Similarity=0.048  Sum_probs=90.4

Q ss_pred             ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccC-cceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEc
Q 023643           90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTES-KVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVD  168 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (279)
                      ...+..|+|.+... .++++-...+.|+.++++..... .....+...            .          .....|+++
T Consensus       423 ~~~~~gl~~d~~~~-~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~------------l----------~~P~GLAvD  479 (791)
T 3m0c_C          423 LRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD------------I----------QAPDGLAVD  479 (791)
T ss_dssp             CSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CEEEECSS------------C----------SCCCEEEEE
T ss_pred             CCceEEEeecccCC-eeEEeeccceeEEEEeccCCCCCcceeEEEecC------------C----------CCcceeeee
Confidence            44578899998655 25556566788888887532110 000011100            0          124688999


Q ss_pred             CCCCeEE-EecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCC-CeEEEEeCCCCceEEEecCCccc
Q 023643          169 PQGGAIF-SAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSED-GTARIWDCKSGKCIKVIDPVKDK  245 (279)
Q Consensus       169 ~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~  245 (279)
                      +.+..|+ +-...+.|.+.++........+.........|+++|.+.+| ++-... +.|.+.++........+      
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv------  553 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV------  553 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE------
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE------
Confidence            8776555 44567899999997554444444444568999999975444 443333 78998888644333333      


Q ss_pred             cccCcceeeeEEEEcCCCCEEEEE-cCcceEEe
Q 023643          246 QLKGVISCVSCITLDASESWLVRV-RATNYVIL  277 (279)
Q Consensus       246 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~  277 (279)
                        ...-....+|++++.+..|+.+ ...+.|..
T Consensus       554 --~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~  584 (791)
T 3m0c_C          554 --TENIQWPNGITLDLLSGRLYWVDSKLHSISS  584 (791)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             --eCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence              2222456788998766655554 33444543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0051  Score=49.90  Aligned_cols=69  Identities=12%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             ceeEEEcCCCC-eEEEecCCCeEEEEecC-------CCcE-----------EEE-ee-cCCcceEEEEEcCCCcE-EEEe
Q 023643          162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVE-------SSRI-----------KMV-FK-GHSDYLHCIVARNSTNQ-IVTG  219 (279)
Q Consensus       162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~-------~~~~-----------~~~-~~-~~~~~i~~i~~~~~~~~-l~~~  219 (279)
                      ...++++|++. ++++-..++.|..+|+.       ++..           ... +. ......+.|+|+|+|++ +++-
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            36889999555 45556677889999997       4543           112 22 12345689999999995 5555


Q ss_pred             cCCCeEEEEeC
Q 023643          220 SEDGTARIWDC  230 (279)
Q Consensus       220 ~~d~~i~vwd~  230 (279)
                      +....|+.++.
T Consensus       329 ~~~h~I~kid~  339 (496)
T 3kya_A          329 INNHYFMRSDY  339 (496)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEec
Confidence            67788988654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.93  E-value=0.003  Score=52.79  Aligned_cols=76  Identities=13%  Similarity=0.218  Sum_probs=56.1

Q ss_pred             eEEEcCCCCeEEEecCC----------------CeEEEEecCCCcEEEEeecCC----------cceEEEEEc-CCC---
Q 023643          164 AIAVDPQGGAIFSAAGD----------------SCAYCWDVESSRIKMVFKGHS----------DYLHCIVAR-NST---  213 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~~~~----------~~i~~i~~~-~~~---  213 (279)
                      .+++.+...+++.++.+                +.|.-+|.++++.+..++...          .++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            45677777788887765                389999999999998876422          1222 2222 456   


Q ss_pred             cEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          214 NQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       214 ~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      ..++.++.+|.+.++|.++|+.+....
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeeccc
Confidence            567889999999999999999887764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.91  E-value=0.0042  Score=47.79  Aligned_cols=108  Identities=13%  Similarity=0.045  Sum_probs=63.8

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeec----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKG----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      +..+.+.+++..+ .++.+|.+++.+.+.++.-..+..    +...+.++++.+++..++++. +|.|. +....|+.-.
T Consensus       207 ~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~  283 (327)
T 2xbg_A          207 LHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQ  283 (327)
T ss_dssp             EEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCE
T ss_pred             cceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccE
Confidence            5788888887655 455578887764332433222221    223588999988877777665 66663 4444555444


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      .+...     ......+..+.|.+++. +++++.+|.|.-+
T Consensus       284 ~~~~~-----~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~  318 (327)
T 2xbg_A          284 QDVDV-----KKVPSNFYKILFFSPDQ-GFILGQKGILLRY  318 (327)
T ss_dssp             ECGGG-----TTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred             EcCcc-----CCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence            44211     11234567888875555 5566678877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.81  E-value=0.0004  Score=59.28  Aligned_cols=164  Identities=8%  Similarity=-0.009  Sum_probs=91.5

Q ss_pred             eEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE
Q 023643           28 VFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      ...|++.+.   .+.++++-...+.|.++++....                   ....+.........|++.|.+. .++
T Consensus       455 P~glavD~~---~g~LY~tD~~~~~I~v~d~dg~~-------------------~~~l~~~~~~~P~giavDp~~g-~ly  511 (699)
T 1n7d_A          455 PDGLAVDWI---HSNIYWTDSVLGTVSVADTKGVK-------------------RKTLFREQGSKPRAIVVDPVHG-FMY  511 (699)
T ss_dssp             CCCEECCCS---SSBCEECCTTTSCEEEEBSSSCC-------------------EEEECCCSSCCCCCEECCSSSS-CCE
T ss_pred             cceEEEEee---CCcEEEEeccCCeEEEEecCCCc-------------------eEEEEeCCCCCcceEEEccCCC-cEE
Confidence            446777752   45555665667788888887521                   1111111123356788888654 133


Q ss_pred             EEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEE
Q 023643          108 LSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYC  185 (279)
Q Consensus       108 ~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i  185 (279)
                      ++-.. .+.|...+++.. ....+.  ...                      ....+.|+|+|++..|+.+ ...+.|..
T Consensus       512 ~td~~~~~~I~~~~~dG~-~~~~l~--~~~----------------------l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          512 WTDWGTPAKIKKGGLNGV-DIYSLV--TEN----------------------IQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             ECCCSSSCCEEBCCSSSC-CCCEES--CSS----------------------CSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             EcccCCCCeEEEEeCCCC-CeeEEE--eCC----------------------CCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            33322 266777665421 110000  000                      0014689999986666554 45678999


Q ss_pred             EecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          186 WDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       186 ~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +|+........+.  ........|++..+ .++++....+.|..++..+++.+..+.
T Consensus       567 ~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          567 IDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            9987433222222  11233455666544 566666778899999988888777764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.80  E-value=0.0069  Score=50.56  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=65.5

Q ss_pred             CCCC---eEEEecCCCeEEEEecCCCcEEEEeecCCc--ce---------------------------------------
Q 023643          169 PQGG---AIFSAAGDSCAYCWDVESSRIKMVFKGHSD--YL---------------------------------------  204 (279)
Q Consensus       169 ~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i---------------------------------------  204 (279)
                      .+++   .++.++.+|.++++|..+++++..+.....  ..                                       
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            4564   678899999999999999998876653310  00                                       


Q ss_pred             ----EEEEEcCCCcEEEEec---------------------------------CCCeEEEEeCCCCceEEEecCCccccc
Q 023643          205 ----HCIVARNSTNQIVTGS---------------------------------EDGTARIWDCKSGKCIKVIDPVKDKQL  247 (279)
Q Consensus       205 ----~~i~~~~~~~~l~~~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~  247 (279)
                          ..++++|+...+++..                                 .+|.|..||+.+++.+.+.....    
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----  486 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----  486 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----
Confidence                1245666544433321                                 36889999999999887764211    


Q ss_pred             cCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          248 KGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       248 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                           ++..-.....+.+++.|+.|+.++.||
T Consensus       487 -----~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          487 -----PLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             -----CCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             -----CCcccceEeCCCEEEEECCCCcEEEEE
Confidence                 111111112366777789999998875

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.78  E-value=0.0075  Score=47.52  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCc------------EEEEeec------CCcceEEEEEcCC---CcEEEEec
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSR------------IKMVFKG------HSDYLHCIVARNS---TNQIVTGS  220 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~------~~~~i~~i~~~~~---~~~l~~~~  220 (279)
                      |..+..+|+|.+|+..+ +..|.|..+..+.            ..+.+.-      ...+|..+.|+|-   +..|++-.
T Consensus        68 i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           68 TFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             eeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            67899999999998876 5678888876221            1223332      2467999999994   56899999


Q ss_pred             CCCeEEEEeCCCCc--eEEEecCCcc-ccccCcceeeeEEEEcCCCCEEEEE--cCcceEEe
Q 023643          221 EDGTARIWDCKSGK--CIKVIDPVKD-KQLKGVISCVSCITLDASESWLVRV--RATNYVIL  277 (279)
Q Consensus       221 ~d~~i~vwd~~~~~--~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~  277 (279)
                      .|+.|++||+....  +. .++.... ..+......|.+++|.+++-.|...  +..|-|+-
T Consensus       147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99999999998632  22 3331110 1122334678999999988766664  47787753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.56  E-value=0.01  Score=44.85  Aligned_cols=93  Identities=11%  Similarity=0.060  Sum_probs=49.6

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceEE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCIK  237 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~  237 (279)
                      ++..++.|+.+     ..+.+||+.+.+-...  +........++.+  +++.++.|+.+     ..+.+||+.+.+...
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            55666666543     4588999887643332  2111111122222  56777888764     468999998876544


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      .-..+      ........+.+  ++++++.|+.+
T Consensus       237 ~~~~p------~~r~~~~~~~~--~~~i~v~GG~~  263 (301)
T 2vpj_A          237 VTSMT------TPRCYVGATVL--RGRLYAIAGYD  263 (301)
T ss_dssp             ECCCS------SCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCCCC------CcccceeEEEE--CCEEEEEcCcC
Confidence            32211      11111122223  56777777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.53  E-value=0.024  Score=45.99  Aligned_cols=170  Identities=11%  Similarity=0.067  Sum_probs=92.2

Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecC-------CCccCccee-eeccCcccceEEeecCCCCCccccCCCCCCcee
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWK-------EFTESKVPI-NLQGNHVKPVLDLVNHQHKGPWGALSPVPENNA  164 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (279)
                      ...++.+|++. .++++-..++.|..+|+.       +........ ...+ ....+...  ...          ...+.
T Consensus       249 p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g-~~~~l~~~--~~~----------~~p~~  314 (496)
T 3kya_A          249 CNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN-TFKQLFTI--ADP----------SWEFQ  314 (496)
T ss_dssp             CCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT-TEEEEEEC--SSS----------SCCEE
T ss_pred             ceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeeccccccccc-ccceeEec--CCC----------CCceE
Confidence            45678899544 266677788889999975       221100000 0000 00011111  000          11378


Q ss_pred             EEEcCCCCeEEEe-cCCCeEEEEecC--CCcE--EEEeecC---C------------cceE-EEEEc-------CCCcEE
Q 023643          165 IAVDPQGGAIFSA-AGDSCAYCWDVE--SSRI--KMVFKGH---S------------DYLH-CIVAR-------NSTNQI  216 (279)
Q Consensus       165 ~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~---~------------~~i~-~i~~~-------~~~~~l  216 (279)
                      ++|+|+++.|+.+ +....|+.++..  .+..  ...+-+.   .            .... .++..       +++.++
T Consensus       315 ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~ly  394 (496)
T 3kya_A          315 IFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFY  394 (496)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEE
T ss_pred             EEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEE
Confidence            9999999965554 556788886653  3321  1222211   0            1234 45554       567777


Q ss_pred             EEecCCCeEEEEeCCCCceEEEecCCcc--------------c--cccCcceeeeEEEEcCC-CCEEEEEcCcceEEeC
Q 023643          217 VTGSEDGTARIWDCKSGKCIKVIDPVKD--------------K--QLKGVISCVSCITLDAS-ESWLVRVRATNYVILF  278 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~--------------~--~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~w  278 (279)
                      ++=.....|+.++ .+|. +.++...-.              .  .....-..-..|+++++ +.++++=..+..|+.+
T Consensus       395 VaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          395 FVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             EEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            8777888999998 4664 344432100              0  00111234678999997 7777776777788765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.47  E-value=0.02  Score=43.38  Aligned_cols=93  Identities=10%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             CCCeEEEecC---------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCC
Q 023643          170 QGGAIFSAAG---------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSG  233 (279)
Q Consensus       170 ~~~~l~~~~~---------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~  233 (279)
                      ++..++.|+.         -..+.+||+.+.+-...  +......-..+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            4555555543         34588999987643322  2111111122222  56777777754     35889999887


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      +-...-..      ........++.+  ++++++.|+.+
T Consensus       227 ~W~~~~~~------p~~r~~~~~~~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          227 EWKMVSPM------PWKGVTVKCAAV--GSIVYVLAGFQ  257 (306)
T ss_dssp             EEEECCCC------SCCBSCCEEEEE--TTEEEEEECBC
T ss_pred             cEEECCCC------CCCccceeEEEE--CCEEEEEeCcC
Confidence            64433211      111112223333  67778888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.41  E-value=0.027  Score=43.69  Aligned_cols=106  Identities=8%  Similarity=0.064  Sum_probs=61.7

Q ss_pred             eeEEEcC--CCC-eEEEecC---CCeEEEEecCCC-c---EEEEeecC-CcceEEEEEcCCCcEEEEecC----------
Q 023643          163 NAIAVDP--QGG-AIFSAAG---DSCAYCWDVESS-R---IKMVFKGH-SDYLHCIVARNSTNQIVTGSE----------  221 (279)
Q Consensus       163 ~~~~~~~--~~~-~l~~~~~---d~~i~i~d~~~~-~---~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~----------  221 (279)
                      ..+.+.+  ++. +|+++..   +..|.+|++... .   .+..+.+. -.....+.+.++|.++++...          
T Consensus       115 hGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~  194 (355)
T 3sre_A          115 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW  194 (355)
T ss_dssp             EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHH
T ss_pred             eeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccc
Confidence            4566544  343 4544422   467888777643 2   23334332 245789999999998887651          


Q ss_pred             -------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeCC
Q 023643          222 -------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILFS  279 (279)
Q Consensus       222 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~wd  279 (279)
                             .|.|.-+|.  ++.. .+        ...-..-+.++|+||++.|+.+ +..+.|..|+
T Consensus       195 e~~~~~~~g~vyr~d~--~~~~-~~--------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~  249 (355)
T 3sre_A          195 EMHLGLAWSFVTYYSP--NDVR-VV--------AEGFDFANGINISPDGKYVYIAELLAHKIHVYE  249 (355)
T ss_dssp             HHHTTCCCEEEEEECT--TCCE-EE--------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             hhhccCCccEEEEEEC--CeEE-Ee--------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence                   244555554  3222 22        1112345889999999877765 4566777663

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.39  E-value=0.025  Score=42.77  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=37.7

Q ss_pred             CCCeEEEecC-------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 023643          170 QGGAIFSAAG-------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKC  235 (279)
Q Consensus       170 ~~~~l~~~~~-------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~  235 (279)
                      ++..++.|+.       ...+.+||+.+.+-...  +.........+.+  +++.++.|+.+     ..+.+||+.+.+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            4555555543       24588999887643332  2211111222222  57778888764     3689999988765


Q ss_pred             EE
Q 023643          236 IK  237 (279)
Q Consensus       236 ~~  237 (279)
                      ..
T Consensus       233 ~~  234 (302)
T 2xn4_A          233 RQ  234 (302)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.31  E-value=0.059  Score=45.40  Aligned_cols=160  Identities=11%  Similarity=0.007  Sum_probs=93.2

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..+.+++|.+.   ++.++++-...+.|+.++++...                   ....+...-.....+++.+.+. +
T Consensus       349 ~~~~~ld~d~~---~~~ly~sD~~~~~I~r~~~~g~~-------------------~~~v~~~~~~~p~GlAvD~~~~-~  405 (619)
T 3s94_A          349 RHAIAIDYDPV---EGYIYWTDDEVRAIRRSFIDGSG-------------------SQFVVTAQIAHPDGIAVDWVAR-N  405 (619)
T ss_dssp             SSEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSCCCEEEEETTTT-E
T ss_pred             CccEEEEEEcC---CCeEEEEeCCCCeEEEEEcCCCc-------------------cEEEEECCCCCcCceEEecccC-c
Confidence            45678889882   44555555567888888887521                   1111222223456788876444 3


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--CCeE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--DSCA  183 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i  183 (279)
                      +.++-+..+.|.+.+++.. ...   .+....           -          .....|+++|....|+....  ...|
T Consensus       406 lY~tD~~~~~I~v~~~~G~-~~~---~l~~~~-----------l----------~~P~~iavdp~~G~ly~tD~g~~~~I  460 (619)
T 3s94_A          406 LYWTDTGTDRIEVTRLNGT-MRK---ILISED-----------L----------EEPRAIVLDPMVGYMYWTDWGEIPKI  460 (619)
T ss_dssp             EEEEETTTTEEEEEETTSC-SCE---EEECTT-----------C----------CSEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEEEeCCCCcEEEEeCCCC-eEE---EEEECC-----------C----------CCeeeEEEEcCCCcEEEecCCCCCEE
Confidence            6666667788988887532 111   111000           0          12479999997555555442  3677


Q ss_pred             EEEecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCCC
Q 023643          184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~  233 (279)
                      ...+++...........-.....+++++++.. .++=+..+.|..+++...
T Consensus       461 ~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          461 ERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             EEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            77776533222222333456789999986544 455556778999998543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.20  E-value=0.044  Score=41.69  Aligned_cols=93  Identities=11%  Similarity=0.020  Sum_probs=48.7

Q ss_pred             CCCeEEEecC------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCC-----eEEEEeCCCCceE
Q 023643          170 QGGAIFSAAG------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDG-----TARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~  236 (279)
                      +++.++.|+.      -..+.+||+.+.+-...  +......-.++.+  +++.++.|+.++     .+.+||+.+.+..
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            4556666654      24689999887643321  2111111122222  567777777654     4889999887654


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      ..-..+      ........+.+  ++++++.|+.+
T Consensus       226 ~~~~~p------~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          226 PFEAFP------QERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             EECCCS------SCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             ECCCCC------CcccceeEEEE--CCEEEEECCcc
Confidence            432211      11111122233  56777777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.18  E-value=0.045  Score=41.49  Aligned_cols=66  Identities=14%  Similarity=0.107  Sum_probs=38.2

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceEE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCIK  237 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~  237 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +......-.++.+  +++.++.|+.+     ..+.+||+.+.+...
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            45566666543     4588999887643321  1111111222223  57777888764     558999998876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.17  E-value=0.0014  Score=46.73  Aligned_cols=106  Identities=7%  Similarity=-0.068  Sum_probs=62.9

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE------EEEee-cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI------KMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      +..++|+|++.+.++  .+|.++-.+..+...      -..+- .--..-.++.|.|+|.+.++  .||.|+-++..+..
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD  118 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence            579999998875555  678877777655211      11110 00111468899999998888  56988877764422


Q ss_pred             eEEEecCCccccc-cCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643          235 CIKVIDPVKDKQL-KGVISCVSCITLDASESWLVRVRATNYV  275 (279)
Q Consensus       235 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i  275 (279)
                      ...-+....  .+ ..-=..+..+.|+|+|.+.+..  |+.+
T Consensus       119 ~~~Wl~~a~--~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          119 TDNWIARAT--EVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             TCCHHHHSE--EEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCceecccc--EeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            111110000  00 1111356899999999987777  6655

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.16  E-value=0.062  Score=42.65  Aligned_cols=194  Identities=11%  Similarity=0.124  Sum_probs=114.1

Q ss_pred             CCceeeeccccccccceeeeeec----ccceEEEEECCCCCCCCCEEEEec-------CCCcEEEEeCCCCCcccccccC
Q 023643            2 CGDSTNWDEDAYRKSILKEREIL----TRTVFRTVWGPSKDGSPDTIVIAS-------SDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      +..|.-|++++.. ...+.+.-|    ...|..-..++    +.++++..+       -.|.+.+|..+.          
T Consensus       124 ~taVyHWsi~~~s-~P~kvFdR~~~L~~~QIInY~~d~----~~kW~~l~GI~~~~~~v~G~mQLYS~er----------  188 (494)
T 1bpo_A          124 DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA----KQKWLLLTGISAQQNRVVGAMQLYSVDR----------  188 (494)
T ss_dssp             SSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECT----TSSEEEEEEEEEETTEEEEEEEEEESTT----------
T ss_pred             CCeeEEecccCCC-CchhheecchhcccceEEEEEECC----CCCeEEEEeecccCCcccceEEEeeccc----------
Confidence            3457778876532 333333333    35677777788    788776533       247789999885          


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCc-eEEEEeeCC---CcEEEeecCCCccCcceeeeccCcccceEEee-
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED-ALLLSCGDD---GRICGWRWKEFTESKVPINLQGNHVKPVLDLV-  145 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (279)
                                +..+.+.+|.+.-..+....+... .+|..+...   +.+.|-++........  .+.    +...++. 
T Consensus       189 ----------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~--~f~----kk~vdv~f  252 (494)
T 1bpo_A          189 ----------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFP----KKAVDVFF  252 (494)
T ss_dssp             ----------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC--CCC----CEEEECCC
T ss_pred             ----------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC--Ccc----ceeeeeeC
Confidence                      344566777765544444322211 244444432   6788888753211111  000    0111111 


Q ss_pred             cCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                      .++...        .--.++..++....++..+.-|.|++||+.++.++..-+-....|..-+.+....-++.....|.|
T Consensus       253 ppe~~~--------DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          253 PPEAQN--------DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             CTTSTT--------CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             Cccccc--------CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            111111        123578889988899999999999999999999998877667777666665554445555566666


Q ss_pred             EEEeCCCCc
Q 023643          226 RIWDCKSGK  234 (279)
Q Consensus       226 ~vwd~~~~~  234 (279)
                      .--.+....
T Consensus       325 l~v~v~e~~  333 (494)
T 1bpo_A          325 LSVCVEEEN  333 (494)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEcccc
Confidence            555444433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.15  E-value=0.032  Score=44.05  Aligned_cols=138  Identities=13%  Similarity=0.173  Sum_probs=80.1

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccc-ccc-CCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLP-LGL-SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ..|..+..+|    +|++||..+.. .|.|-.+..+..... ... .+.. .......+.  ......+|..+.|+|-+.
T Consensus        66 ~~i~qlvlSp----sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~--~~~~~s~I~qVlWHPl~~  137 (452)
T 3pbp_A           66 DDTFHVISST----SGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEE--EVGPKSSIKKVLFHPKSY  137 (452)
T ss_dssp             CTTCEEEECT----TSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGC--C--CCCCEEEEEECTTBG
T ss_pred             CceeEEEECC----CCCEEEEecCC-eEEEEEecCccccCcccccccccc-eeEEEcCCc--ccCCCCceeEEEeccccC
Confidence            3678899999    99999998654 799998884311110 000 0000 000001111  011357899999999654


Q ss_pred             -ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec--CC
Q 023643          104 -DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA--GD  180 (279)
Q Consensus       104 -~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d  180 (279)
                       +..|++-..|+.|++||+...... .. .+...  ...           +........|.+++|.+++-.|++.+  ..
T Consensus       138 ~ds~LVVLtsD~~Ir~yDl~~s~~~-P~-~L~k~--~~~-----------fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~  202 (452)
T 3pbp_A          138 RDSCIVVLKEDDTITMFDILNSQEK-PI-VLNKP--NNS-----------FGLDARVNDITDLEFSKDGLTLYCLNTTEG  202 (452)
T ss_dssp             GGCEEEEEETTSCEEEEETTCTTSC-CE-EESCC--CSE-----------EESCSSCCCEEEEEECTTSSCEEEEECTTS
T ss_pred             CCCeEEEEecCCEEEEEEcccCCCC-Cc-chhcc--ccc-----------cCCCcccceEEEEEEcCCCcEEEEEecCCC
Confidence             138999999999999999752111 11 22210  000           11111223588999999888787754  77


Q ss_pred             CeEEEE
Q 023643          181 SCAYCW  186 (279)
Q Consensus       181 ~~i~i~  186 (279)
                      |-|+-.
T Consensus       203 GDIYAl  208 (452)
T 3pbp_A          203 GDIFAF  208 (452)
T ss_dssp             CEEEEE
T ss_pred             CCEEEE
Confidence            888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.97  E-value=0.085  Score=40.97  Aligned_cols=59  Identities=5%  Similarity=-0.046  Sum_probs=37.9

Q ss_pred             ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce------EEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC------IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ....++| .+|..+++.-..+.|...++.....      ...+        ......+..+++.|||.++++..
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~--------~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA--------LSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE--------EESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee--------cccCCCeeEEEECCCCcEEEEEe
Confidence            4567777 4677777777777788777654321      1111        11124678999999998777764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.93  E-value=0.15  Score=43.10  Aligned_cols=165  Identities=12%  Similarity=0.073  Sum_probs=94.3

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC------CccCeEEEEec
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG------HDGPAYDVKFY   99 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~   99 (279)
                      ..+.+++|.+.   ++.++.+=...+.|+.++++...                   ....+..      ....+..|++.
T Consensus       340 ~~~~~ld~d~~---~~~iy~sD~~~~~I~r~~~~g~~-------------------~~~v~~~~~~~~~~~~~p~glAvD  397 (628)
T 4a0p_A          340 RNVRAIDYDPL---DKQLYWIDSRQNMIRKAQEDGSQ-------------------GFTVVVSSVPSQNLEIQPYDLSID  397 (628)
T ss_dssp             SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEEC--------CCCEEEEEEE
T ss_pred             CCceEEEEecC---CCeEEEEecCcceEEEEEcCCCC-------------------ceEEEEcccccccccCCcceEEee
Confidence            45788999882   44445554566788888776421                   1111111      23357889988


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec-
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA-  178 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  178 (279)
                      ..+. ++.++-+..+.|.+.+++..    ....+...           ..          ...+.|+++|...+|+... 
T Consensus       398 ~~~~-nLY~td~~~~~I~v~~~~G~----~~~~l~~~-----------~l----------~~Pr~iavdp~~g~ly~tD~  451 (628)
T 4a0p_A          398 IYSR-YIYWTCEATNVINVTRLDGR----SVGVVLKG-----------EQ----------DRPRAVVVNPEKGYMYFTNL  451 (628)
T ss_dssp             TTTT-EEEEEETTTTEEEEEETTSC----EEEEEEEC-----------TT----------CCEEEEEEETTTTEEEEEEE
T ss_pred             ccCC-eEEEEcCCCCEEEEEECCCC----eEEEEEeC-----------CC----------CceeeEEEecCCCeEEEeec
Confidence            8765 35567777888888887421    11111000           00          0247999999545444432 


Q ss_pred             CCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEE-EecCCCeEEEEeCCCCceEEEe
Q 023643          179 GDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       179 ~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ...  .|...+++...........-.....+++++..+.|. +=+..+.|...++. |.....+
T Consensus       452 g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~  514 (628)
T 4a0p_A          452 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVL  514 (628)
T ss_dssp             ETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE
T ss_pred             CCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEE
Confidence            222  577777653333222333345678999999755554 44557889999985 4444444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.87  E-value=0.17  Score=45.92  Aligned_cols=105  Identities=6%  Similarity=0.052  Sum_probs=60.7

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe--CCCCceEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD--CKSGKCIKV  238 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd--~~~~~~~~~  238 (279)
                      +++++-- +| +|++|- ..+|++|++...+.++ ....+ ..+..+.....+++++.|..-..|.++.  ...++....
T Consensus       888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            5565532 34 455444 4789999998665444 11112 1233333333478888888777776654  333433333


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      -+       .....+++++.|-.+ ..++.+..+|.+.+.
T Consensus       964 a~-------D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl  995 (1158)
T 3ei3_A          964 AR-------DFNPNWMSAVEILDD-DNFLGAENAFNLFVC  995 (1158)
T ss_dssp             EE-------CCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred             Ee-------ecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence            22       234567888888644 467778888888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.76  E-value=0.11  Score=39.16  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=37.7

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCC-----eEEEEeCCCCceE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDG-----TARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~  236 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +.........+.  .+++.++.|+.++     .+.+||+.+.+-.
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            45666666653     4688999987643322  211111112222  2577788887654     4899999877543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.74  E-value=0.13  Score=39.52  Aligned_cols=106  Identities=8%  Similarity=0.018  Sum_probs=63.2

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEec--CCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDV--ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +..+.+.|++.+++++...+..+-.|-  .+.+.+.  ......+..+++.+++..++. +.+|.+++.+...++.-..+
T Consensus       165 ~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~  241 (327)
T 2xbg_A          165 MRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGEL  241 (327)
T ss_dssp             EEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCC
T ss_pred             eEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEec
Confidence            578899998887776655444444553  3344442  234567889999998876654 45788777642324333222


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYV  275 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  275 (279)
                      ....    ......+..+++.+++..++++. +|.+
T Consensus       242 ~~~~----~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          242 LSPL----RRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             BCTT----SSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             cCCc----ccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            1110    01223578889998888777765 4544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.72  E-value=0.33  Score=44.11  Aligned_cols=80  Identities=18%  Similarity=0.075  Sum_probs=47.5

Q ss_pred             ccceEEEEECCCC--CCCCCEEEEecC-CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           25 TRTVFRTVWGPSK--DGSPDTIVIASS-DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        25 ~~~v~~~~~~~~~--~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      ..+|.|+++.|..  ...++++|+|.. |++|+|+++.+.+....                 ..+.. .....++.+..-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-----------------~~L~~-~~~p~si~l~~~  614 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK-----------------EMLGG-EIIPRSILMTTF  614 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE-----------------EECCS-SCCEEEEEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE-----------------EECCC-CCCCcEEEEEEe
Confidence            5689999998731  123578999996 99999999986321110                 01111 112333333221


Q ss_pred             CCceEEEEeeCCCcEEEeecC
Q 023643          102 NEDALLLSCGDDGRICGWRWK  122 (279)
Q Consensus       102 ~~~~~l~s~~~dg~i~iw~~~  122 (279)
                      +...+|..|-.||.+.-+.++
T Consensus       615 ~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          615 ESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TTEEEEEEEETTSEEEEEEEC
T ss_pred             CCCcEEEEEeCCCeEEEEEEc
Confidence            222478888889988766654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.66  E-value=0.1  Score=37.36  Aligned_cols=154  Identities=10%  Similarity=0.013  Sum_probs=78.5

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc--CCccCeEEEEecCCCC
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH--GHDGPAYDVKFYGGNE  103 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~  103 (279)
                      ..+..++|+|    ++.+.++  .+|.+.-.+..++....-+.            . ...+-  +-.. -.++.|.|++.
T Consensus        41 ~~~~~laf~P----~G~LYaV--~~G~Ly~~~~~t~~~~~W~~------------s-~t~IG~~Gw~~-F~a~~fD~~G~  100 (236)
T 1tl2_A           41 SNFKFLFLSP----GGELYGV--LNDKIYKGTPPTHDNDNWMG------------R-AKKIGNGGWNQ-FQFLFFDPNGY  100 (236)
T ss_dssp             TTCSEEEECT----TSCEEEE--ETTEEEEESCCCSTTCCHHH------------H-CEEEECSCGGG-CSEEEECTTSC
T ss_pred             ccceeEEECC----CccEEEE--eCCeEEEECCCCCCcccccc------------c-ccEeccccccc-ceEEEECCCCC
Confidence            4677999999    8998777  77776665654422111100            0 00010  1111 36788999996


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        +.++  .||.|+-++..+.........  ...      +    ...-|      ..+..|.+.|+|.+.++.  |+.+
T Consensus       101 --LYav--~dG~iyr~~pP~~~~~~Wl~~--a~~------v----g~~gw------~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          101 --LYAV--SKDKLYKASPPQSDTDNWIAR--ATE------V----GSGGW------SGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             --EEEE--ETTEEEEESCCCSTTCCHHHH--SEE------E----ECSSG------GGEEEEEECTTSCEEEEE--TTEE
T ss_pred             --EEEe--CCCEEEEeCCCcCCCCceecc--ccE------e----ccCCC------CceEEEEECCCceEEEEe--CCcE
Confidence              4444  569888777432111111000  000      0    00000      025789999999876666  7776


Q ss_pred             EEEecCCCc------EEEEee-cCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          184 YCWDVESSR------IKMVFK-GHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       184 ~i~d~~~~~------~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                      +-....++.      ....+- ..-..-+.+.|.+++...++.  ++.+
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            544333211      011111 222233446677777766655  6633

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.65  E-value=0.19  Score=40.50  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPS   60 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~   60 (279)
                      -..-+.|+|.|    +++++++-...+.|++++..+
T Consensus        26 l~~P~~~a~~p----dG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           26 LNKPHALLWGP----DNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             CSSEEEEEECT----TSCEEEEETTTCEEEEECTTT
T ss_pred             CCCceEEEEcC----CCcEEEEEcCCCEEEEEECCC
Confidence            34567999999    898777765545788887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.61  E-value=0.16  Score=39.18  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=38.8

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGG  101 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  101 (279)
                      .-..-+.|+|.|    ++.++++--..|.|++++...+....            + ...-..+....+....|+++|+
T Consensus        30 gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~~~------------v-~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           30 GLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRKTE------------L-GEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             CCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCEEE------------E-EECTTCCCBTTBSEEEEEECTT
T ss_pred             CCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcEee------------e-cccCceeecCCCCceeeEeccc
Confidence            345678999999    89988877668999998865432100            0 0000112234566899999995

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.60  E-value=0.063  Score=41.70  Aligned_cols=100  Identities=11%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcE--EEEee---cCCcceEEEEEcCC---CcE-EEEecCC-----CeEEE
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI--KMVFK---GHSDYLHCIVARNS---TNQ-IVTGSED-----GTARI  227 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~---~~~~~i~~i~~~~~---~~~-l~~~~~d-----~~i~v  227 (279)
                      ...++|.|++++++ +...+.|++++  .++.  +..+.   ........|+++|+   +.. +++-...     +.|..
T Consensus        33 P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            37899999998554 55669999998  3432  22221   12456789999998   444 4443332     67888


Q ss_pred             EeCCCCce-----E-EEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          228 WDCKSGKC-----I-KVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       228 wd~~~~~~-----~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      |+...++.     + ..+....   -..|.  ...++|.|+|.++++.
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~---~~~h~--~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARP---HGLHS--GGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCT---TCCCC--CCCEEECTTSCEEEEC
T ss_pred             EEeCCCCcCceEEEEEeCCCCC---CCCcC--CceEEECCCCCEEEEE
Confidence            88764321     1 1121000   01232  3689999999766664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.59  E-value=0.15  Score=38.40  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=37.8

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~  236 (279)
                      ++..++.|+.+     ..+.+||+.+.+-...  +........++.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            45566666653     4689999987654332  2111111222222  57777888765     45788998876543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.56  E-value=0.18  Score=39.11  Aligned_cols=29  Identities=7%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             cceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCC
Q 023643           26 RTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIP   59 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~   59 (279)
                      ..-+.|+|.|    +++ ++++ ...|.|++++..
T Consensus        18 ~~P~~i~~~p----dG~~l~V~-e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLP----DNHGMLIT-LRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECS----TTCCEEEE-ETTTEEEEEETT
T ss_pred             CCcEEEEEcC----CCCEEEEE-eCCceEEEEeCC
Confidence            4568999999    888 5554 567999998854

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.56  E-value=0.16  Score=38.56  Aligned_cols=66  Identities=11%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             CCCeEEEecC------CCeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643          170 QGGAIFSAAG------DSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~------d~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~  236 (279)
                      ++..++.|+.      -..+.+||+.+.+-...  +........++.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            4555566653      24589999987643322  2111111122222  56777777643     34778998877644


Q ss_pred             E
Q 023643          237 K  237 (279)
Q Consensus       237 ~  237 (279)
                      .
T Consensus       236 ~  236 (318)
T 2woz_A          236 V  236 (318)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.53  E-value=0.12  Score=39.94  Aligned_cols=102  Identities=11%  Similarity=-0.035  Sum_probs=62.4

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE--EEe----ecCCcceEEEEEcCC----CcEEEEe--cCCCeEEEEe
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK--MVF----KGHSDYLHCIVARNS----TNQIVTG--SEDGTARIWD  229 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~----~~~~~~i~~i~~~~~----~~~l~~~--~~d~~i~vwd  229 (279)
                      ...|+|.|++.++++--..|.|++++...++..  ..+    .........|+++|+    +.+.++-  ..++.|.-|.
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~  113 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML  113 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence            478999999987776665899999987655432  222    123567899999995    4444432  2345566565


Q ss_pred             CCCC----------ceE-EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          230 CKSG----------KCI-KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       230 ~~~~----------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      +..+          +.+ ..+.. .    ..|  .-..++|.|||.++++.+
T Consensus       114 ~~~~~~~~~~~~~~~~i~~~~p~-~----~~H--~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          114 YDEKKPSGEQLGAPDTVFRGIPK-G----VIH--NGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             BCTTSCTTCCBCCCEEEEEEECC-C----SSC--CCCCEEECTTSCEEEECB
T ss_pred             eCCCCcccccCCCcEEEEEcCCC-C----CCc--cCccccCCCCCCEEEEEC
Confidence            5431          111 11211 0    233  346789999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.40  E-value=0.23  Score=38.52  Aligned_cols=62  Identities=6%  Similarity=-0.070  Sum_probs=41.4

Q ss_pred             cceEEEEEc-------CCCcEEEEecCCCeEEEEeCCCC-ceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          202 DYLHCIVAR-------NSTNQIVTGSEDGTARIWDCKSG-KCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       202 ~~i~~i~~~-------~~~~~l~~~~~d~~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      .....++|.       .+|.++++.-..+.|...++... +..  ..+.       .+....+..+++.|||.++++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-------KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-------TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-------cCCCCCeeEEEECCCCcEEEEEe
Confidence            356778883       46777877777888888888753 222  1221       22234678999999998777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.38  E-value=0.089  Score=42.45  Aligned_cols=103  Identities=9%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEE--EEeec------CCcceEEEEEcCC----CcEEEEecC--------
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK--MVFKG------HSDYLHCIVARNS----TNQIVTGSE--------  221 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~------~~~~i~~i~~~~~----~~~l~~~~~--------  221 (279)
                      ...|+|.|+++++++-...+.|++++..+++..  ..+..      ....+..|+|+|+    +.+.++-+.        
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~  108 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK  108 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence            479999999987776554457998887655432  22221      2456789999995    444444332        


Q ss_pred             ----CCeEEEEeCCCC--c-----eEE-EecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          222 ----DGTARIWDCKSG--K-----CIK-VIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       222 ----d~~i~vwd~~~~--~-----~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                          ...|.-|++..+  +     .+. .+.. .    ..|  ....|+|.|||.++++.+.
T Consensus       109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~----~~H--~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-S----KDH--QSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-C----SSC--CEEEEEECTTSCEEEEECC
T ss_pred             ccccccEEEEEEECCCCCCcCCcEEEEEcCCC-C----CCC--CCCeEeECCCCeEEEEECC
Confidence                234555554322  1     111 1211 0    123  4688999999987776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.35  E-value=0.51  Score=43.55  Aligned_cols=188  Identities=15%  Similarity=0.191  Sum_probs=100.7

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      .++.|+|++....  ++.... ..+|.-=.|-.     .+.|+..+. ..|.-|++...                  ..|
T Consensus        86 ~~lQiFnl~~k~k--lks~~~-~e~VvfWkWis-----~~~l~lVT~-~aVyHW~~~~~------------------s~P  138 (1630)
T 1xi4_A           86 KTLQIFNIEMKSK--MKAHTM-TDDVTFWKWIS-----LNTVALVTD-NAVYHWSMEGE------------------SQP  138 (1630)
T ss_pred             CeEEEeehHHhhh--hccccc-CCCceEEEecC-----CCeeEEEcC-CeEEEeccCCC------------------Ccc
Confidence            4677888777643  444432 34566666654     344555443 36889998642                  344


Q ss_pred             cccccCC----ccCeEEEEecCCCCceEEEEee-------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643           83 DGFLHGH----DGPAYDVKFYGGNEDALLLSCG-------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG  151 (279)
Q Consensus        83 ~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (279)
                      ...+..|    ...|....-+++.+  .++..|       -.|.+.+|..+..    ....+.| |...+..+..++...
T Consensus       139 ~k~fdR~~~L~~~QIinY~~d~~~k--W~~l~gi~~~~~~v~G~mQLyS~er~----~sQ~ieg-ha~~F~~~~~~~~~~  211 (1630)
T 1xi4_A          139 VKMFDRHSSLAGCQIINYRTDAKQK--WLLLTGISAQQNRVVGAMQLYSVDRK----VSQPIEG-HAASFAQFKMEGNAE  211 (1630)
T ss_pred             HHHHhcchhcccCeeEEeeeCCCCC--eEEEEeeccCCCcccceeeeeecccc----cchhhhH-hHhhhheeccCCCCC
Confidence            4444444    34566666777776  544322       3578888887532    1122222 222222221111111


Q ss_pred             ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC---cE------EEEeec---CCcceEEEEEcCCCcEEEEe
Q 023643          152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS---RI------KMVFKG---HSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~------~~~~~~---~~~~i~~i~~~~~~~~l~~~  219 (279)
                      +       ..+.|.+....        ..+.++|-++...   .+      +..+-.   ...-..+|..++.-..+..-
T Consensus       212 ~-------~~l~~f~~~~~--------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i  276 (1630)
T 1xi4_A          212 E-------STLFCFAVRGQ--------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (1630)
T ss_pred             C-------ceEEEEEEecC--------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence            0       01223322210        1267888887432   11      111111   12344567777777777788


Q ss_pred             cCCCeEEEEeCCCCceEEEe
Q 023643          220 SEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~  239 (279)
                      +.-|.|.+||+.++.++..-
T Consensus       277 tk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             ecCceEEEEecccchhhhhc
Confidence            89999999999999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.0069  Score=46.56  Aligned_cols=64  Identities=19%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeecCCc--c-----eEEEEEc-----CCCcEEEEecCCCeEEEEeCCCCc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSD--Y-----LHCIVAR-----NSTNQIVTGSEDGTARIWDCKSGK  234 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-----i~~i~~~-----~~~~~l~~~~~d~~i~vwd~~~~~  234 (279)
                      .+..+++|+.++.+.-.|+++|+.+.++.....  .     ..|....     ..+..++.+..+..+.+.+ ++|+
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA  185 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence            355789999999999999999999998864321  0     1111110     1245677777777777776 4554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.21  E-value=0.35  Score=38.55  Aligned_cols=189  Identities=15%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      .++.|+|++.+.+  ++.+.. .+.|.-=.|-.     .+.|+..+. ..|.-|++...                  ..|
T Consensus        86 ~~lQiFnle~K~k--lks~~~-~e~VvfWkWis-----~~~l~lVT~-taVyHWsi~~~------------------s~P  138 (494)
T 1bpo_A           86 KTLQIFNIEMKSK--MKAHTM-TDDVTFWKWIS-----LNTVALVTD-NAVYHWSMEGE------------------SQP  138 (494)
T ss_dssp             TEEEEEETTTTEE--EEEEEC-SSCCCEEEEEE-----TTEEEEECS-SEEEEEESSSS------------------CCC
T ss_pred             CeEEEEchHHhhh--hcceec-CCCceEEEecC-----CCeEEEEcC-CeeEEecccCC------------------CCc
Confidence            3567777766543  444432 34555556654     345555443 36788887642                  233


Q ss_pred             cccccCC----ccCeEEEEecCCCCceEEEEee-------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643           83 DGFLHGH----DGPAYDVKFYGGNEDALLLSCG-------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG  151 (279)
Q Consensus        83 ~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (279)
                      .+.+..|    ...|.....+++.+  .++..|       -.|.+.+|..+.    .....+.+ |...+..+...+...
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~k--W~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~ieG-haa~F~~~~~~g~~~  211 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQK--WLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG-HAASFAQFKMEGNAE  211 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSS--EEEEEEEEEETTEEEEEEEEEESTT----CCEEEECC-SEEEEEEEECTTCSS
T ss_pred             hhheecchhcccceEEEEEECCCCC--eEEEEeecccCCcccceEEEeeccc----cccchhee-eeeeeEEEecCCCCC
Confidence            3333333    23466677777777  554332       247788888653    22333333 333333333222211


Q ss_pred             ccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCC--------c-EEEEee---cCCcceEEEEEcCCCcEEEEe
Q 023643          152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS--------R-IKMVFK---GHSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       152 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~-~~~~~~---~~~~~i~~i~~~~~~~~l~~~  219 (279)
                      +.       .+.|++....        ..+.+++.++...        + .+..+-   ...+-..+|..++.-..+..-
T Consensus       212 ~~-------~lf~fa~r~~--------~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          212 ES-------TLFCFAVRGQ--------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             EE-------EEEEEEECST--------TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             Cc-------eEEEEEEecC--------CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            10       1222222211        1368888888532        1 111111   123456788888887788888


Q ss_pred             cCCCeEEEEeCCCCceEEEec
Q 023643          220 SEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      ..-|.|.+||+.++.++..-+
T Consensus       277 TK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE
T ss_pred             ecCceEEEEecccceeeeeec
Confidence            899999999999999988763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.17  E-value=0.18  Score=46.26  Aligned_cols=194  Identities=11%  Similarity=0.094  Sum_probs=102.9

Q ss_pred             CCceeeeccccccccceeeeeec----ccceEEEEECCCCCCCCCEEEEec-------CCCcEEEEeCCCCCcccccccC
Q 023643            2 CGDSTNWDEDAYRKSILKEREIL----TRTVFRTVWGPSKDGSPDTIVIAS-------SDGSITSYSIPSCISKLPLGLS   70 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~   70 (279)
                      +..|.-|++.+.. ...+.+.-|    ...|..-.-++    +.++++..+       -.|.+.+|.++..         
T Consensus       124 ~~aVyHW~~~~~s-~P~k~fdR~~~L~~~QIinY~~d~----~~kW~~l~gi~~~~~~v~G~mQLyS~er~---------  189 (1630)
T 1xi4_A          124 DNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA----KQKWLLLTGISAQQNRVVGAMQLYSVDRK---------  189 (1630)
T ss_pred             CCeEEEeccCCCC-ccHHHHhcchhcccCeeEEeeeCC----CCCeEEEEeeccCCCcccceeeeeecccc---------
Confidence            3457788886532 223333323    45677777777    778776533       4578899998853         


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCc-eEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEeec
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNED-ALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN  146 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (279)
                                 ..+.+.||.+.-..+........ ..+..+..   .+.+.|-++.....+..  .+..   +.+--++.
T Consensus       190 -----------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~--~f~k---k~~~~~~~  253 (1630)
T 1xi4_A          190 -----------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PFPK---KAVDVFFP  253 (1630)
T ss_pred             -----------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC--CCcc---ccccccCC
Confidence                       33455566554433333211110 13332222   26788888754211111  0100   00000111


Q ss_pred             CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEE
Q 023643          147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR  226 (279)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~  226 (279)
                      +...        ..-..++..++....++..+.-|.|++||+.++.++..-+-...+|...+.+....-++.....|.|.
T Consensus       254 ~~~~--------~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl  325 (1630)
T 1xi4_A          254 PEAQ--------NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (1630)
T ss_pred             cccc--------cCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEE
Confidence            1111        11135778888888888999999999999999988876655555555555444333333334555554


Q ss_pred             EEeCCCC
Q 023643          227 IWDCKSG  233 (279)
Q Consensus       227 vwd~~~~  233 (279)
                      --.+...
T Consensus       326 ~v~v~~~  332 (1630)
T 1xi4_A          326 SVCVEEE  332 (1630)
T ss_pred             EEEEccc
Confidence            4444433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.07  E-value=0.31  Score=36.80  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=37.3

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~  236 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            45666666553     5689999987643322  2111111122222  56777887754     45788888876544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.94  E-value=0.42  Score=37.12  Aligned_cols=29  Identities=10%  Similarity=-0.035  Sum_probs=21.6

Q ss_pred             ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeC
Q 023643           25 TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSI   58 (279)
Q Consensus        25 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~   58 (279)
                      -..-..++|.|    +++++++ ..+|.|++++.
T Consensus        28 l~~P~~ia~~p----dG~l~V~-e~~g~I~~~d~   56 (354)
T 3a9g_A           28 LEVPWSIAPLG----GGRYLVT-ERPGRLVLISP   56 (354)
T ss_dssp             CSCEEEEEEEE----TTEEEEE-ETTTEEEEECS
T ss_pred             CCCCeEEEEcC----CCeEEEE-eCCCEEEEEeC
Confidence            34568899999    8875555 55699998873

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.90  E-value=0.72  Score=39.51  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=40.9

Q ss_pred             eEEEcCC-CCeEEEecC--C-----CeEEEEecCCCcE-----EEEeec----CCcceEEEEEcCCCcEEEEecC-----
Q 023643          164 AIAVDPQ-GGAIFSAAG--D-----SCAYCWDVESSRI-----KMVFKG----HSDYLHCIVARNSTNQIVTGSE-----  221 (279)
Q Consensus       164 ~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~~-----~~~~~~----~~~~i~~i~~~~~~~~l~~~~~-----  221 (279)
                      ++.+..+ +..++.|+.  +     ..+.+||+.+.+-     -..+..    ..... +++...+++.++.|+.     
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCC
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCC
Confidence            3555655 556666654  2     4688999987661     111111    11111 2223333677788874     


Q ss_pred             ---CCeEEEEeCCCCceE
Q 023643          222 ---DGTARIWDCKSGKCI  236 (279)
Q Consensus       222 ---d~~i~vwd~~~~~~~  236 (279)
                         ...+.+||+.+.+..
T Consensus       622 ~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCTTTSEEEEETTTTEEE
T ss_pred             CCCCCeEEEEECCCCeEE
Confidence               345999999887655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.67  E-value=0.47  Score=35.71  Aligned_cols=65  Identities=12%  Similarity=0.179  Sum_probs=37.9

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCI  236 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~  236 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +........++.+  +++.++.|+.+     ..+.+||+.+.+-.
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            45566666543     4588999987643322  2211122223333  57788888754     56889999886543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.66  E-value=0.14  Score=39.81  Aligned_cols=106  Identities=9%  Similarity=0.046  Sum_probs=58.0

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe-------ecCCcceEEEEEcCC----CcEEEEecC-------CC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF-------KGHSDYLHCIVARNS----TNQIVTGSE-------DG  223 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~i~~~~~----~~~l~~~~~-------d~  223 (279)
                      ...|+|.|+++.|+++...|.|++++.. +.....+       .........|+++|+    +...++-+.       ..
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            4789999999844455567999999854 3321111       112346789999995    444444332       23


Q ss_pred             eEEEEeCCCC--c--eEEE-ecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          224 TARIWDCKSG--K--CIKV-IDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       224 ~i~vwd~~~~--~--~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      .|..|++...  +  .... +.......-..|  .-..++|.|||.++++.+
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEEC
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEEC
Confidence            5666666432  1  1111 111000000123  235799999997666643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.47  E-value=0.49  Score=36.56  Aligned_cols=57  Identities=9%  Similarity=-0.001  Sum_probs=30.2

Q ss_pred             eEEEEecCCCc--EEEEeecCCcceEEEEEcCCCcEEEEecCCC------eEEEEeCCCCceEEEec
Q 023643          182 CAYCWDVESSR--IKMVFKGHSDYLHCIVARNSTNQIVTGSEDG------TARIWDCKSGKCIKVID  240 (279)
Q Consensus       182 ~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~  240 (279)
                      .+.+||+.+.+  .+..+......-.++  ..+++.++.|+.++      .|.++++++++.+....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            57789987653  333333222222222  23577888888643      36667888877766543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.41  E-value=0.5  Score=36.48  Aligned_cols=41  Identities=17%  Similarity=-0.007  Sum_probs=19.0

Q ss_pred             eEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          224 TARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       224 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      .+.+||+.+.+....-..+      .....-.++.  .++++++.|+.+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~--~~~~i~v~GG~~  326 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELS------QGRAYGVSLP--WNNSLLIIGGET  326 (357)
T ss_dssp             CCEEEECC---CEEEEECS------SCCBSSEEEE--ETTEEEEEEEEC
T ss_pred             eEEEEecCCCceeeCCCCC------CCcccceeEE--eCCEEEEEeeeC
Confidence            5788998876544332111      1111112222  367778888754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.97  E-value=0.069  Score=43.77  Aligned_cols=105  Identities=13%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             ceeEEEcCCCCeEEEec-CCCeEEEEecCCC------cE-------EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643          162 NNAIAVDPQGGAIFSAA-GDSCAYCWDVESS------RI-------KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI  227 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~------~~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v  227 (279)
                      ...+..+|||+++++++ .+.++.++|.+..      +.       ..+.+ -.-.....+|.++|+-..+--.|..|.-
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            46789999999887755 4788999998742      11       22333 2234578899999977788889999999


Q ss_pred             EeCCCC----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          228 WDCKSG----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       228 wd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      |++...          ..+.++..+-+   .+|.....+=.-.|+|++|++..
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEec
Confidence            998653          34555543321   23322111112356777777763

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.89  E-value=0.89  Score=34.38  Aligned_cols=67  Identities=13%  Similarity=0.118  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCC-----eEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCCC--------------eEEEE
Q 023643          170 QGGAIFSAAGDS-----CAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSEDG--------------TARIW  228 (279)
Q Consensus       170 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~--------------~i~vw  228 (279)
                      +++.++.|+.++     .+.+||+.+.+-...  +.........+.+  +++.++.|+.++              .+.+|
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y  273 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRY  273 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEe
Confidence            456666666543     588999987643332  2111112222222  567777777542              37788


Q ss_pred             eCCCCceEEE
Q 023643          229 DCKSGKCIKV  238 (279)
Q Consensus       229 d~~~~~~~~~  238 (279)
                      |+.+.+-...
T Consensus       274 d~~~~~W~~~  283 (315)
T 4asc_A          274 NEEEKKWEGV  283 (315)
T ss_dssp             ETTTTEEEEE
T ss_pred             cCCCChhhhh
Confidence            9888765554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.56  E-value=0.67  Score=37.45  Aligned_cols=105  Identities=6%  Similarity=0.006  Sum_probs=60.5

Q ss_pred             ceeEEEcCCCC-eEEEecCCCeEEEEecCCC---cEEEEee---------cCCcceEEEEEcCC----CcEEEEecC--C
Q 023643          162 NNAIAVDPQGG-AIFSAAGDSCAYCWDVESS---RIKMVFK---------GHSDYLHCIVARNS----TNQIVTGSE--D  222 (279)
Q Consensus       162 i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~---------~~~~~i~~i~~~~~----~~~l~~~~~--d  222 (279)
                      ...|+|.|++. .|+++...|.|++++....   ..+..+.         .....+..|+|+|+    +.+.++-+.  +
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            37899999986 5666677899999975422   1222221         11456889999996    444444332  1


Q ss_pred             ----------CeEEEEeCCCC----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCc
Q 023643          223 ----------GTARIWDCKSG----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       223 ----------~~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                                ..|.-|.+..+          +.+..+...    ...|  .-..|+|.|||.+.++.+..
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~----~~~H--~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL----HRKH--LGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES----SSSS--CEEEEEECTTSCEEEEECCT
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC----CCcc--cCCcEeECCCCcEEEEeCCC
Confidence                      13444555321          222222211    1234  35789999999877766543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.37  E-value=1.2  Score=33.62  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             eEEEcCCCCeEEEec----CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC-CCeEEEEeCCCCceEEE
Q 023643          164 AIAVDPQGGAIFSAA----GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE-DGTARIWDCKSGKCIKV  238 (279)
Q Consensus       164 ~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~  238 (279)
                      +..|+++++.|+-..    ....|+..++.... ...+..+..    .+++|+++.|.-.+. ...|.+.++..+.....
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l  182 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF  182 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence            336777888777654    45567777776433 333433322    456777777775554 67788888766554433


Q ss_pred             e
Q 023643          239 I  239 (279)
Q Consensus       239 ~  239 (279)
                      +
T Consensus       183 ~  183 (302)
T 3s25_A          183 Y  183 (302)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.59  E-value=1.8  Score=32.74  Aligned_cols=64  Identities=5%  Similarity=0.019  Sum_probs=37.6

Q ss_pred             EcCCCCeEEEec-CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC--CeEEEEeCCCCc
Q 023643          167 VDPQGGAIFSAA-GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED--GTARIWDCKSGK  234 (279)
Q Consensus       167 ~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~vwd~~~~~  234 (279)
                      ++|+++.|+-.+ ....|...++..+.....+.+   .. ...+.|++.+|+-....  ..|..-++..+.
T Consensus       152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             SEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             eeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            456677666444 367888888876655444432   22 23456888877765433  356666665443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.39  E-value=1.9  Score=32.55  Aligned_cols=67  Identities=6%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             CCCeEEEecCC-----CeEEEEecCCCcEEEE--eecCCcceEEEEEcCCCcEEEEecCC--------------CeEEEE
Q 023643          170 QGGAIFSAAGD-----SCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGSED--------------GTARIW  228 (279)
Q Consensus       170 ~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d--------------~~i~vw  228 (279)
                      ++..++.|+.+     ..+.+||+.+.+-...  +.........+.  .+++.++.|+.+              ..+.+|
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y  283 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY  283 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence            45566666532     3577899887643322  211111112222  256777777754              357888


Q ss_pred             eCCCCceEEE
Q 023643          229 DCKSGKCIKV  238 (279)
Q Consensus       229 d~~~~~~~~~  238 (279)
                      |+.+.+-...
T Consensus       284 d~~~~~W~~~  293 (318)
T 2woz_A          284 EDDKKEWAGM  293 (318)
T ss_dssp             ETTTTEEEEE
T ss_pred             eCCCCEehhh
Confidence            9888766554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.77  E-value=0.38  Score=37.04  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=47.0

Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecC-CcceEEEEEc--C-CCcEEEEe-cCCCeEEEEeCCCCceEEEe
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGH-SDYLHCIVAR--N-STNQIVTG-SEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~--~-~~~~l~~~-~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..+++++.||.|+-+|..+|+.+.+++.. ..++....-.  + ++..++.. +.||.|..++..+|.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            47888999999999999999999998754 1233221110  1 22344443 68999999999888655444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.42  E-value=4.9  Score=34.71  Aligned_cols=185  Identities=8%  Similarity=0.060  Sum_probs=98.5

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..|.++.-..    ++ .|-.|+.+| +..||..+....                   .........|.++.. .++   
T Consensus        63 ~~i~~i~~d~----~g-~lWigT~~G-l~~yd~~~~~f~-------------------~~~~~~~~~i~~i~~-~~g---  113 (758)
T 3ott_A           63 TRIYCGVIID----NT-YLYMGTDNG-ILVYNYRADRYE-------------------QPETDFPTDVRTMAL-QGD---  113 (758)
T ss_dssp             SCEEEEEEET----TT-EEEEEETTE-EEEEETTTTEEC-------------------CCSCCCCSCEEEEEE-ETT---
T ss_pred             ceEEEEEEcC----CC-cEEEEeCCC-eEEEeCCCCEEE-------------------CcccCCCceEEEEEe-cCC---
Confidence            4588877666    44 555666665 778898763110                   000011234666654 344   


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .|..++.+ -+..++..+..    ...+... ..                ..+...|.++....++.+. +|+.. -+..
T Consensus       114 ~lWigt~~-Gl~~~~~~~~~----~~~~~~~-~~----------------~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~  169 (758)
T 3ott_A          114 TLWLGALN-GLYTYQLQSRK----LTSFDTR-RN----------------GLPNNTIYSIIRTKDNQIY-VGTYN-GLCR  169 (758)
T ss_dssp             EEEEEETT-EEEEEETTTCC----EEEECHH-HH----------------CCSCSCEEEEEECTTCCEE-EEETT-EEEE
T ss_pred             cEEEEcCC-cceeEeCCCCe----EEEeccC-CC----------------CcCCCeEEEEEEcCCCCEE-EEeCC-CHhh
Confidence            45555555 57778864321    1111000 00                0001136777777776644 45554 4778


Q ss_pred             EecCCCcEEEEe-ec----CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          186 WDVESSRIKMVF-KG----HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       186 ~d~~~~~~~~~~-~~----~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      +|..+++..... ..    ....|.++...+++..|..|+. +-|..+|..+++.....        ......|.++..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~--------~l~~~~i~~i~~d  240 (758)
T 3ott_A          170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE--------AFHNNSIKSLALD  240 (758)
T ss_dssp             EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE--------EEEEEEEEEEEEC
T ss_pred             CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc--------CCCCCeEEEEEEc
Confidence            887766543211 11    1234888888777665444553 45888898776543221        1123468888888


Q ss_pred             CCCCEEEEEcCcc
Q 023643          261 ASESWLVRVRATN  273 (279)
Q Consensus       261 ~~~~~l~~~~~d~  273 (279)
                      ++|.+.+.. .+|
T Consensus       241 ~~g~lWigT-~~G  252 (758)
T 3ott_A          241 GNGDLLAGT-DNG  252 (758)
T ss_dssp             TTCCEEEEE-TTE
T ss_pred             CCCCEEEEe-CCc
Confidence            888766554 445

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.41  E-value=2.6  Score=31.45  Aligned_cols=64  Identities=9%  Similarity=0.099  Sum_probs=31.0

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      |..++....  ..+.-. ||.|+.|-....-.+..-..-...|..++.... ..++.  .||.|..|=..
T Consensus       143 i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n  206 (282)
T 3qhy_B          143 VTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDN  206 (282)
T ss_dssp             EEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECC
T ss_pred             eEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECC
Confidence            455554432  222233 688888865432111111111245666665433 22333  48888888654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.36  E-value=8.1  Score=35.33  Aligned_cols=37  Identities=5%  Similarity=-0.088  Sum_probs=31.8

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  197 (279)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            4556677788889999999999999999999988875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.99  E-value=6.9  Score=33.52  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=40.8

Q ss_pred             CCCCeEEEecCCC--eEEEEecCCCcEEEEe-----ecCCcceEEEEEcCC-CcEEEEecC--C-----CeEEEEeCCCC
Q 023643          169 PQGGAIFSAAGDS--CAYCWDVESSRIKMVF-----KGHSDYLHCIVARNS-TNQIVTGSE--D-----GTARIWDCKSG  233 (279)
Q Consensus       169 ~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~-----~~~~~~i~~i~~~~~-~~~l~~~~~--d-----~~i~vwd~~~~  233 (279)
                      .++..++.|+.++  .+.+||+.+.+-...-     ........++.+... ++.++.|+.  +     +.+.+||+.+.
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            4677777776544  6899999876533321     111122233555554 677788875  2     45889999887


Q ss_pred             c
Q 023643          234 K  234 (279)
Q Consensus       234 ~  234 (279)
                      +
T Consensus       579 ~  579 (695)
T 2zwa_A          579 N  579 (695)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.00  E-value=8.8  Score=33.15  Aligned_cols=107  Identities=7%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |.++...+++..|..|+. +-+..+|..+++...........|.++....+|.+.+.. .+ -+.+++..+++... +..
T Consensus       193 i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~~~~-~~~  268 (758)
T 3ott_A          193 VNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTPLQH-IIH  268 (758)
T ss_dssp             EEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSCCEE-ECC
T ss_pred             eEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCcEEE-EEc
Confidence            678887777776666664 458889987765433211224568888887777765543 44 47888877665433 221


Q ss_pred             CccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          242 VKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      .......-....|.++..+.+|.+.+.. ..|
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G  299 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG  299 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS
T ss_pred             CCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc
Confidence            1100001123468888888887755543 335

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.29  E-value=4.6  Score=36.08  Aligned_cols=37  Identities=5%  Similarity=-0.088  Sum_probs=32.7

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  197 (279)
                      .+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677788888889999999999999999999988875

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.96  E-value=5.8  Score=32.94  Aligned_cols=117  Identities=12%  Similarity=0.015  Sum_probs=66.8

Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCc--ceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESK--VPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ...+..+|+|+ ..++++-.+.++.+++++......  .+..+.    ..+.. ......          .....+|+++
T Consensus       325 PHGv~vsPDGk-yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~----~~~~a-e~e~Gl----------GPlHt~Fd~~  388 (638)
T 3sbq_A          325 PHGCNTSSDGK-YFIAAGKLSPTCSMIAIDKLPDLFAGKLADPR----DVIVG-EPELGL----------GPLHTTFDGR  388 (638)
T ss_dssp             CCCEEECTTSC-EEEEECTTSSBEEEEEGGGHHHHHTTCCSCGG----GGEEE-CCBCCS----------CEEEEEECSS
T ss_pred             CcceeeCCCCC-EEEEcCCCCCeEEEEEeehhhhhhhccccCcc----cceEe-eccCCC----------cccEEEECCC
Confidence            45688899998 344555668999999986421100  000000    00000 000111          1367899999


Q ss_pred             CCeEEEecCCCeEEEEecCCC----------cEEEEeecCCcceEEEE-----EcCCCcEEEEec---CCCeE
Q 023643          171 GGAIFSAAGDSCAYCWDVESS----------RIKMVFKGHSDYLHCIV-----ARNSTNQIVTGS---EDGTA  225 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~i~~i~-----~~~~~~~l~~~~---~d~~i  225 (279)
                      |....+-.-|..|..|++...          ..+..+.-|..+-.-.+     -.|+|++|++..   .|+.+
T Consensus       389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl  461 (638)
T 3sbq_A          389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFL  461 (638)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSC
T ss_pred             CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCc
Confidence            966666778999999999753          35555555544322211     246788888864   45543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.93  E-value=2.2  Score=38.00  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=34.0

Q ss_pred             ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            467778888888999999999999999999999888653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.59  E-value=10  Score=30.71  Aligned_cols=30  Identities=10%  Similarity=0.166  Sum_probs=22.9

Q ss_pred             cceEEEEECCCCCCCCC-EEEEecCCCcEEEEeCC
Q 023643           26 RTVFRTVWGPSKDGSPD-TIVIASSDGSITSYSIP   59 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~   59 (279)
                      ..-+.|+|.|    ++. .|+++...|.|++++..
T Consensus        14 ~~P~~~a~~p----dG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSG----DGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCS----SSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECC----CCCeEEEEEeCCceEEEEeCC
Confidence            4567899999    775 45556778999999754

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=85.98  E-value=4.6  Score=34.51  Aligned_cols=36  Identities=8%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK  198 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  198 (279)
                      .|.++.+  +..++++-+.|.++|+||+.+++++.+..
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            3555554  46799999999999999999999887764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.49  E-value=4.2  Score=37.14  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      .+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            344556667788999999999999999999999888653

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.40  E-value=6.7  Score=32.79  Aligned_cols=59  Identities=10%  Similarity=-0.001  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCcEEEEecCC------------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          204 LHCIVARNSTNQIVTGSED------------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       204 i~~i~~~~~~~~l~~~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      .-.|+|+|.|++++.-..+            +.+.+.+..+++....+..       .....++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-------P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-------CTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-------CCCccCcCeeECCCCCEEEEE
Confidence            4678999999876654322            3466667777776665532       234689999999999988765

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.23  E-value=14  Score=30.81  Aligned_cols=60  Identities=8%  Similarity=-0.026  Sum_probs=41.5

Q ss_pred             ceEEEEEcCCCcEEEEecC------------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          203 YLHCIVARNSTNQIVTGSE------------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                      ....|.|+++|.+.+....            ...+..++..+++....+..       .....++.++|+||++.|+.+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-------P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-------CTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-------CCCccccCCEECCCCCEEEEE
Confidence            4567999999987773221            22577777777776655521       123568999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 1e-14
 Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 15/195 (7%)

Query: 73  KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN 132
           K+ ++          GH      V+     +  L+ SC +D  +  W             
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 133 LQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR 192
            +        + ++   +  + ++S    +        G  + S + D     WDV +  
Sbjct: 184 HRHVV-----ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 193 IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS 252
             M   GH +++  ++  +    I++ ++D T R+WD K+ +C+K         L     
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--------LNAHEH 290

Query: 253 CVSCITLDASESWLV 267
            V+ +    +  ++V
Sbjct: 291 FVTSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 3e-12
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 28/201 (13%)

Query: 29  FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG 88
           +  +  P++DG+   I   S+D ++  + + +   K  L   +  V + +   P+     
Sbjct: 145 WVRMVRPNQDGT--LIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSS 201

Query: 89  HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQ 148
                       G     LLS   D  I  W                     ++ LV H 
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--------------MCLMTLVGHD 247

Query: 149 HKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIV 208
           +               +     G  I S A D     WD ++ R       H  ++  + 
Sbjct: 248 N-----------WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296

Query: 209 ARNSTNQIVTGSEDGTARIWD 229
              +   +VTGS D T ++W+
Sbjct: 297 FHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 19/176 (10%)

Query: 86  LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKV---------------- 129
           L GH  P   V F+     ++++S  +D  I  W ++     +                 
Sbjct: 13  LSGHRSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 130 -PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDV 188
             +    +    +        +            +++++ P G  I SA+ D     W+V
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 189 ESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD 244
           ++      F GH +++  +        I + S D T R+W   + +C   +   + 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 34/262 (12%), Positives = 70/262 (26%), Gaps = 34/262 (12%)

Query: 40  SPD--TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97
            P    +V AS D +I  +   +   +  L      VQ +        L           
Sbjct: 26  HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 85

Query: 98  FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157
           +     + +    G D  +         +  V  +         +               
Sbjct: 86  WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTG 141

Query: 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCI---------- 207
                  +  +  G  I S + D     W V +   K   + H   + CI          
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201

Query: 208 ----------VARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257
                      +      +++GS D T ++WD  +G C+          L G  + V  +
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LVGHDNWVRGV 253

Query: 258 TLDASESWLVRVRATNYVILFS 279
              +   +++       + ++ 
Sbjct: 254 LFHSGGKFILSCADDKTLRVWD 275

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 194 KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
           K    GH   +  ++     + +V+ SED T ++WD ++G   + + 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 23/111 (20%), Positives = 44/111 (39%)

Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED 222
             +   P    + SA+ D+    WD E+   +   KGH+D +  I   +S   + + S D
Sbjct: 21  TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80

Query: 223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN 273
            T ++WD +  +CI+ +           I       + AS    +++    
Sbjct: 81  MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 8e-13
 Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 25/144 (17%)

Query: 86  LHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLV 145
             GH+     + F+         +  DD     +  +                       
Sbjct: 222 FTGHESDINAICFFPNGN--AFATGSDDATCRLFDLR----------------------- 256

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
             Q    +   + +    +++    G  + +   D     WD   +    V  GH + + 
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 206 CIVARNSTNQIVTGSEDGTARIWD 229
           C+   +    + TGS D   +IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 9e-08
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 163 NAIAVDPQGGAIFSAAGDSCAY--CWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS 220
           NAI   P G A  + + D+         +   +          +  +    S   ++ G 
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV 267
           +D    +WD        V        L G  + VSC+ +      + 
Sbjct: 290 DDFNCNVWDALKADRAGV--------LAGHDNRVSCLGVTDDGMAVA 328

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 35/242 (14%), Positives = 74/242 (30%), Gaps = 9/242 (3%)

Query: 40  SPD--TIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK 97
             D   +V AS DG +  +   +      + L +S V          ++           
Sbjct: 64  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query: 98  FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALS 157
           +     +  +    +     G+           I          L  +    +       
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTG 182

Query: 158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV 217
              +  ++++ P      S A D+ A  WDV     +  F GH   ++ I    + N   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 218 TGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVIL 277
           TGS+D T R++D ++ + +              I  ++ ++   S   L+         +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNI------ICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 278 FS 279
           + 
Sbjct: 297 WD 298

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 21/156 (13%)

Query: 82  PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPV 141
            +    GH    Y V F    +   ++S   D  +  W  +                +  
Sbjct: 246 ENESGTGHKDSVYSVVF--TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS 201
                                 ++A       I S + D     WD +S    ++ +GH 
Sbjct: 304 YIGHKDFV-------------LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 350

Query: 202 DYLHCIVARNST------NQIVTGSEDGTARIWDCK 231
           + +  +   N +      N   TGS D  ARIW  K
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIK------------MVFKGHSDYLHCIVAR 210
            ++     G ++ S + D     W+++++  K            + + GH D++  +   
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 211 NSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW 265
            +   I++GS+D     WD KSG  + +        L+G  + V  + +    S 
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLM--------LQGHRNSVISVAVANGSSL 364

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 30/241 (12%)

Query: 40  SPDTIVIAS-SDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF 98
           S D   +A+  + +   Y +        L   ++  +    +         D     V F
Sbjct: 71  SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT-SSSPSSDLYIRSVCF 129

Query: 99  YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP 158
               +     +     RI     ++              +                    
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS--------- 180

Query: 159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVT 218
                              +GD     WD+ + +  +            V+      I  
Sbjct: 181 ------------------GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 219 GSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF 278
           GS D   R+WD ++G  ++ +D  +++   G    V  +        +V       V L+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDS-ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 279 S 279
           +
Sbjct: 282 N 282

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 6e-08
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           W     +   V KGH D++   +     N+IV+GS+D T ++W   +GKC++ +
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTL 53

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 32/185 (17%)

Query: 73  KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN 132
           KV           L GH    Y ++F G      ++S   D  I  W  +          
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDG----IHVVSGSLDTSIRVWDVETGNCIHTLTG 215

Query: 133 LQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR 192
            Q                                ++ +   + S   DS    WD+++ +
Sbjct: 216 HQSLTS---------------------------GMELKDNILVSGNADSTVKIWDIKTGQ 248

Query: 193 IKMVFKGHSDYLHCIVARNST-NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI 251
                +G + +   +       N ++T S+DGT ++WD K+G+ I+ +  ++     GV+
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 308

Query: 252 SCVSC 256
             +  
Sbjct: 309 WRIRA 313

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 30/210 (14%)

Query: 40  SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99
             + IV  S D ++  +S  +                    +    L GH G  +  +  
Sbjct: 26  CGNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR 66

Query: 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL---------VNHQHK 150
                +                   T       ++  H+     +         V     
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 151 GPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVAR 210
           G    +          V   G  + S A D     WD E+       +GH++ ++ +  +
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--Q 184

Query: 211 NSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
                +V+GS D + R+WD ++G CI  + 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLT 214

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 14/143 (9%), Positives = 37/143 (25%), Gaps = 4/143 (2%)

Query: 101 GNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP 160
             +   L+     G+I        +     +       +               A     
Sbjct: 203 SQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-A 259

Query: 161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTG 219
            +    +  Q                D ++      F+   +     V+++         
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319

Query: 220 SEDGTARIWDCKSGKCIKVIDPV 242
           + D T  I D +SG+ ++ ++ +
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQL 342

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 5e-07
 Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 164 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG 223
            +   P G  I    G S  Y   V S     ++  HS          S     +G   G
Sbjct: 22  VLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 224 TARIWDCKSGKC 235
             RIWD      
Sbjct: 81  NVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVA-RNSTNQIVTGSEDGT 224
              P G  I SA+ D     W+V + +++      +      +    +   +V+ S +G 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 225 ARIWD 229
               +
Sbjct: 305 INFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 20/61 (32%)

Query: 180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           +              +    HS  +  +       +I + S D T +IW+  + K  K I
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 240 D 240
            
Sbjct: 277 P 277

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 7e-07
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 163 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV--FKGHSDYLHCIVARNSTNQIVTGS 220
           +  A +     I     +   + ++   ++   V   K H+  +  +     +N+IVT  
Sbjct: 11  SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70

Query: 221 EDGTARIWDCKSGKC 235
            D  A +W  K    
Sbjct: 71  TDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 200 HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL 259
             + + C        QI     +    I++    K ++V       +LK     V+ +  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV------HELKEHNGQVTGVDW 59

Query: 260 DASESWLVRVRATNYVILFS 279
               + +V         +++
Sbjct: 60  APDSNRIVTCGTDRNAYVWT 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
             ++     G    S   D+    W              S  +           IVTGS 
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSG 326

Query: 222 DGTARIWD 229
           D  A +++
Sbjct: 327 DKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 10/94 (10%), Positives = 21/94 (22%), Gaps = 1/94 (1%)

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLH 205
           + +            +  ++   P G  +      S      V       +   H   + 
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVL 269

Query: 206 CIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
            +         V+  +D     W    G  I   
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 199 GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255
            H + +  +   N T  + TG   G  ++WD         +  +        I    
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 26/216 (12%), Positives = 56/216 (25%), Gaps = 8/216 (3%)

Query: 26  RTVFRTVWGPSKDGSP-DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDG 84
            + +   WG S D      +V     G+   +      +     L+ +    L       
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF-ADESNSLTLNWSPTLELQGTVE 178

Query: 85  FLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDL 144
                   A  V     +E  L+ +  ++G +               +            
Sbjct: 179 SPMTPSQFATSVDI---SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYL 204
                            N+   +               +      SS+  +    HS ++
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEFAHSSWV 292

Query: 205 HCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
             +   +S   + +   DG  R WD K+ + I  ++
Sbjct: 293 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235
             K H   +  + A    +  V+ S DG  ++WD K    
Sbjct: 9   AGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDN 46

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 28/204 (13%), Positives = 53/204 (25%), Gaps = 17/204 (8%)

Query: 40  SPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY 99
                V  S DG +  +      ++ P   S S      G+        H          
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL--------HHVDVLQAIER 74

Query: 100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN--------HVKPVLDLVNHQHKG 151
              E  L+ +    G +  +R     E+K  I  + +        H    L       + 
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
               L          +         +   +  +   +E           S +    V  +
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS-VDIS 193

Query: 212 STNQIVTGSEDGTARIWDCKSGKC 235
               I TG  +GT +I +  + + 
Sbjct: 194 ERGLIATGFNNGTVQISELSTLRP 217

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)

Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK------GHSDYLHCIVARNST------ 213
           +V        S +GD     WD +    +           H   LH +    +       
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 214 -NQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL 247
              + T S  G    +        K +   K   L
Sbjct: 79  LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 1e-06
 Identities = 12/77 (15%), Positives = 26/77 (33%)

Query: 192 RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVI 251
            I  V  GH+  +  + +      + +   +G    WD  +G   +V   V    + G+ 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 252 SCVSCITLDASESWLVR 268
           +         S    ++
Sbjct: 63  TTSKGDLFTVSWDDHLK 79

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 1e-04
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVE--SSRIKMVFKGHSDY 203
           N +            +   ++  P    + + + D+    W++   S    ++   H+  
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS 270

Query: 204 LHCIVARNSTNQIVTGSEDGTARIWD 229
               V   +   IV+  +D   + W+
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 3/123 (2%)

Query: 110 CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP 169
                 +    +   +   V        +           K       PV          
Sbjct: 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261

Query: 170 QGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCI---VARNSTNQIVTGSEDGTAR 226
                 +   D+    WDV +S+    +      L      V      +I++ S DGT  
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 227 IWD 229
            ++
Sbjct: 322 FYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 164 AIAVDPQGGAIFSAAGDSCA-YCWDVESSRIKMV--FKGHSDYLHCIVA---RNSTNQIV 217
            ++ DP   AI    G S    C D   S++  V  F GH   +   V       +  + 
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 81

Query: 218 TGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI 257
           +G E G   +W     K    ++     + + +   +S I
Sbjct: 82  SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 9e-04
 Identities = 12/75 (16%), Positives = 25/75 (33%)

Query: 182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP 241
           C      E  +     +         ++   + +  T   D T R+WD  + KC++    
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291

Query: 242 VKDKQLKGVISCVSC 256
            K +     +  V+ 
Sbjct: 292 DKQQLGNQQVGVVAT 306

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 9e-06
 Identities = 17/237 (7%), Positives = 49/237 (20%), Gaps = 23/237 (9%)

Query: 5   STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISK 64
              +   A     +        T   + +         T  + S   S+   +     + 
Sbjct: 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA-AATHYLGSCPASL--AASDLAAAP 196

Query: 65  LPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEF 124
              G+  ++               + G    +  +      L       G          
Sbjct: 197 AAAGIVGAQCTGAQNCSSQAAQANYPG----MLVWAVASSILQGDIPAAGATMKAAIDGN 252

Query: 125 TESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAY 184
              +                  +     +  ++ +   + I +     +    A      
Sbjct: 253 ESGRKAD---------------NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 185 CWDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSGKCIKVID 240
                  +         D    I A++  +      +      I+D  S +    ++
Sbjct: 298 SVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESS-RIKMVFKGHSDYL 204
             +            E  A   + +   + + + D+  + + V+   +I      H D +
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261

Query: 205 HCIVARNSTNQIVTGSEDGTARIWD 229
           +  +   + + +V+   D   + W+
Sbjct: 262 NN-LLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 6e-04
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC 235
              GH+  +  +    + N +++GS DG    W   S   
Sbjct: 8   TISGHNKGITAL----TVNPLISGSYDGRIMEWSSSSMHQ 43

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 8/85 (9%), Positives = 24/85 (28%), Gaps = 2/85 (2%)

Query: 146 NHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR-IKMVFKGHSDYL 204
              +             +AI        I  +  ++    +++ S + +       +D +
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 327

Query: 205 HCIVARNSTNQIVTGSEDGTARIWD 229
              V       +    +DG + +  
Sbjct: 328 WS-VNFKGKTLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 194 KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
           +   +GH   +   +     N ++TG++D   R++D  + K +  + 
Sbjct: 5   RTTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLS 50

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 26/251 (10%), Positives = 62/251 (24%), Gaps = 13/251 (5%)

Query: 2   CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSC 61
            G +         K                     +  +   IV  S D ++  + +P  
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 62  ISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRW 121
            S    G  +         E + +  G                 +++S   D  +  W  
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 188

Query: 122 KEFTESKVPINLQGNHVKPVLDL-------------VNHQHKGPWGALSPVPENNAIAVD 168
            +     +           + D              +          +  +  + A+   
Sbjct: 189 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 248

Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
            +    F  +  +       +++     F  H   L  I     ++ I+    +    I+
Sbjct: 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308

Query: 229 DCKSGKCIKVI 239
           + +SGK +   
Sbjct: 309 NLRSGKLVHAN 319

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 1/105 (0%)

Query: 166 AVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA 225
            +  +   + + A D     +D  + +  +   GH   +   +       +V+GS D T 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA-LKYAHGGILVSGSTDRTV 76

Query: 226 RIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR 270
           R+WD K G C  V +          I     I    + S    + 
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 12/159 (7%), Positives = 40/159 (25%), Gaps = 5/159 (3%)

Query: 83  DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVL 142
                  D    +  F   ++  ++              +  T      +L   + +   
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258

Query: 143 DLVNHQHKGPWGALS-PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHS 201
             V+         L   +   +             A        +DV++ ++        
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVK 314

Query: 202 DYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID 240
           + L  +        ++   +DG    +  +  +  + ++
Sbjct: 315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 196 VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVS 255
           + +   DY+  I    S + ++  S DG+  ++          +      Q       + 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----LQSLRYKHPLL 60

Query: 256 CITLDASESWLV 267
           C     +    +
Sbjct: 61  CCNFIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 6/159 (3%)

Query: 81  EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKP 140
                L+ ++    +  F      + L+   ++ ++  +R     +    I   G   + 
Sbjct: 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI 196

Query: 141 VLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGH 200
               +  + +  +   S          D QG    S+   +          R+ +     
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH------RLNLKDTNL 250

Query: 201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
           +  ++ I        + T   DG    W+ ++ K IK  
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 102 NEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE 161
            E         DGR+    +          + QG+            H+      +    
Sbjct: 204 KEQEGYACSSIDGRVAVEFF----------DDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE 221
            N+I   P+   +++A  D    CW++++ +    F   ++     +A +  N +   + 
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD-NILCLATS 312

Query: 222 DGTARIWD 229
           D T +   
Sbjct: 313 DDTFKTNA 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 11/209 (5%), Positives = 45/209 (21%), Gaps = 4/209 (1%)

Query: 32  VWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDG 91
           V+  +       +        +      +    L +   +     +   +    L   + 
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 92  PAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG 151
                                             +         + +   L +     K 
Sbjct: 185 NRKGYSAPDVLY--FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242

Query: 152 PWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARN 211
                + + E     +             +    +D++  ++           +C+    
Sbjct: 243 HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301

Query: 212 STNQIVTGSEDGTARIWDCKSGKCIKVID 240
             +++  G       +++  + + +K I 
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 4/92 (4%)

Query: 150 KGPWGALSPV---PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHC 206
           +  W  L      P+     +D       +          D +S +I  V       +H 
Sbjct: 8   RESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHI 66

Query: 207 IVARNSTNQIVTGSEDGTARIWDCKSGKCIKV 238
                S   ++    D    + D  + +  KV
Sbjct: 67  SRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 98

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 195 MVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
                 S  ++C+  +    +IV+G  D T +IWD  + +C +++
Sbjct: 9   HCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRIL 51

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 16/152 (10%)

Query: 87  HGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN 146
                 + D      N          +G   G    ++ +  V      N ++ + D+  
Sbjct: 149 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR-LWDIEC 207

Query: 147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM---------VF 197
                       +              I S A D     WD+ ++               
Sbjct: 208 GACLRVLEGHEELVRCI----RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 198 KGHSDYLHCIVARNSTNQIVTGSEDGTARIWD 229
             HS  +  +       QIV+ S D T  IWD
Sbjct: 264 VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW 228
            +   + S + D+    WD+E      V +GH + + CI  R    +IV+G+ DG  ++W
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVW 243

Query: 229 DCKSGKCIKVIDPVKD-KQLKGVISCVSCITLD 260
           D  +    +        + L      V  +  D
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG 233
           I SA+GD     W+  +        GH   + C+  +     +V+GS D T R+WD + G
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECG 208

Query: 234 KCIKVID 240
            C++V++
Sbjct: 209 ACLRVLE 215

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 8/56 (14%), Positives = 15/56 (26%)

Query: 184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI 239
              D  +++I        D     V  +     V  S   T  + D  +      +
Sbjct: 227 SMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 6/74 (8%), Positives = 20/74 (27%), Gaps = 1/74 (1%)

Query: 167 VDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTAR 226
                    +    +    +D+E +             + +      + +  G   G   
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLA 304

Query: 227 IWDCKSGKCIKVID 240
            +D ++ +    +D
Sbjct: 305 AYDAETLEKKGQVD 318

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.36
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.84
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.58
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.47
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.39
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.3
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.1
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.07
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.01
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.8
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.5
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.18
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.92
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.64
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.62
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.82
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.55
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.5
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.92
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.85
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.18
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.11
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.81
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.32
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.96
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.4

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-40  Score=253.08  Aligned_cols=227  Identities=12%  Similarity=0.127  Sum_probs=189.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ++.|.+|++++..  ..+.+.+|...|++++|+|    ++++||+|+.||+|++||+.+..                 ..
T Consensus        37 ~~~v~i~~~~~~~--~~~~~~~H~~~v~~~~~sp----~g~~latg~~dg~i~iwd~~~~~-----------------~~   93 (311)
T d1nr0a1          37 GTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTT-----------------HI   93 (311)
T ss_dssp             TTEEEEEETTCSS--CCEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEESSSTT-----------------CC
T ss_pred             CCEEEEEECCCCc--eeEEEcCCCCCEEEEEEeC----CCCeEeccccCceEeeeeeeccc-----------------cc
Confidence            3568899988763  3566788999999999999    99999999999999999998742                 11


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeC--CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGD--DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                      ....+..|.++|.+++|+|+++  +|++++.  +..+++|++++...   ...+.++                      .
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~---~~~l~~h----------------------~  146 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTS---NGNLTGQ----------------------A  146 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCB---CBCCCCC----------------------S
T ss_pred             cccccccccCcccccccccccc--ccccccccccccccccccccccc---ccccccc----------------------c
Confidence            2245678999999999999998  8888875  45699999875422   1222221                      1


Q ss_pred             CCceeEEEcCCCCe-EEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          160 PENNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       160 ~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ..|++++|+|++++ +++|+.|+.|++||+++++....+..|...|++++|+|+++++++++.|+.|++||+++++....
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence            23789999999885 78899999999999999999999999999999999999999999999999999999999988887


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.... ....+|...|++++|+|++++|++|+.||.|++||
T Consensus       227 ~~~~~-~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         227 FEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccc-cccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            75322 23357889999999999999999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-40  Score=254.13  Aligned_cols=231  Identities=14%  Similarity=0.173  Sum_probs=185.9

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      ...+++++|.++|++++|+|    ++++||+|+.||+|+|||+.+                   ++.+..+..|..+|.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~----~~~~l~sgs~Dg~v~iWd~~~-------------------~~~~~~~~~~~~~v~~  102 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGT----DSRLLVSASQDGKLIIWDSYT-------------------TNKVHAIPLRSSWVMT  102 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTT-------------------TEEEEEEECSCSCEEE
T ss_pred             eeeEEECCCCCCEEEEEECC----CCCEEEEEECCCceeeeeccc-------------------ceeEEEEecccccEEe
Confidence            34567889999999999999    999999999999999999998                   6777788899999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCccee-eeccCccc-----------------------------------
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI-NLQGNHVK-----------------------------------  139 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~-----------------------------------  139 (279)
                      ++|+|++.  ++++++.|+.+++|+........... .+.++...                                   
T Consensus       103 v~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (340)
T d1tbga_         103 CAYAPSGN--YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EEECTTSS--EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             eEeeccce--eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998  99999999999999976532211111 00000000                                   


Q ss_pred             -----ceEEeec---------------------CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcE
Q 023643          140 -----PVLDLVN---------------------HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRI  193 (279)
Q Consensus       140 -----~~~~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  193 (279)
                           .+.....                     ...........+...|++++|+|++++|++|+.|+.|++||++..+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence                 0000000                     00000001123566799999999999999999999999999999888


Q ss_pred             EEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcC
Q 023643          194 KMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       194 ~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  271 (279)
                      +..+.  .+...|.+++|+|++++|++|+.||.|++||+.+++++..+        .+|...|++++|+|++++|++|+.
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------AGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEeCCCCEEEEEcc
Confidence            77664  46678999999999999999999999999999999999998        788899999999999999999999


Q ss_pred             cceEEeCC
Q 023643          272 TNYVILFS  279 (279)
Q Consensus       272 d~~i~~wd  279 (279)
                      ||.|++||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.8e-39  Score=246.17  Aligned_cols=223  Identities=17%  Similarity=0.255  Sum_probs=183.1

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC--CCcEEEEeCCCCCcccccccCCcccceee
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS--DGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      .||.|++||+..........+..|..+|.+++|+|    ++++|++++.  +..++||++++                  
T Consensus        78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----d~~~l~~~~~~~~~~~~v~~~~~------------------  135 (311)
T d1nr0a1          78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS----ESKRIAAVGEGRERFGHVFLFDT------------------  135 (311)
T ss_dssp             TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT----TSCEEEEEECCSSCSEEEEETTT------------------
T ss_pred             cCceEeeeeeeccccccccccccccCccccccccc----ccccccccccccccccccccccc------------------
Confidence            48999999988876544566788999999999999    8999998875  45699999998                  


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       .++...+.+|.+.|.+++|+|+++ ..|++|+.|+.|++||+++.   ........ +                     
T Consensus       136 -~~~~~~l~~h~~~v~~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~---~~~~~~~~-~---------------------  188 (311)
T d1nr0a1         136 -GTSNGNLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIFEGPPF---KFKSTFGE-H---------------------  188 (311)
T ss_dssp             -CCBCBCCCCCSSCEEEEEECSSSS-CEEEEEETTSCEEEEETTTB---EEEEEECC-C---------------------
T ss_pred             -ccccccccccccccccccccccce-eeeccccccccccccccccc---cccccccc-c---------------------
Confidence             566778889999999999999987 35889999999999998643   22222221 1                     


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee-------cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCC
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK-------GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                      ...|+++.|+|+++++++++.|+.|++||..+++.+..+.       +|.+.|++++|+|++++|++|+.||.|+|||++
T Consensus       189 ~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            1237999999999999999999999999999988877664       578899999999999999999999999999999


Q ss_pred             CCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          232 SGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +++++..+..+.     .+...+.++.|  ++.+|++++.||.|++||
T Consensus       269 t~~~~~~l~~~~-----~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         269 TLKVEKTIPVGT-----RIEDQQLGIIW--TKQALVSISANGFINFVN  309 (311)
T ss_dssp             TTEEEEEEECCS-----SGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred             CCcEEEEEECCC-----CccceEEEEEe--cCCEEEEEECCCEEEEEe
Confidence            999999885431     22234445555  456799999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-39  Score=254.31  Aligned_cols=225  Identities=10%  Similarity=0.100  Sum_probs=186.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|+|||.++.+...+..+.+|.++|.+++|+|    ++++|++|+.|++|+|||+.+..                 .
T Consensus        27 ~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp----~~~~l~s~s~D~~i~vWd~~~~~-----------------~   85 (371)
T d1k8kc_          27 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGRT-----------------W   85 (371)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET----TTTEEEEEETTSCEEEEEEETTE-----------------E
T ss_pred             CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC----CCCEEEEEECCCeEEEEeecccc-----------------c
Confidence            37899999998876667788899999999999999    89999999999999999998632                 2


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      .+...+.+|...|.+++|+|+++  .|++++.|++|++|+++..............+                     ..
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~---------------------~~  142 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPI---------------------RS  142 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTC---------------------CS
T ss_pred             ccccccccccccccccccccccc--cceeecccCcceeeeeeccccccccccccccc---------------------cc
Confidence            34455667899999999999998  99999999999999986432211111111111                     12


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCC------------------cEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESS------------------RIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      .|.+++|+|++++|++|+.|+.|++||....                  +.+.....|...|.+++|+|++++|++++.|
T Consensus       143 ~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC
Confidence            4789999999999999999999999998642                  3566677899999999999999999999999


Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +.|++||+.+++.+..+        ..|..+|.+++|+|++++|++|+ |+.+++|
T Consensus       223 ~~i~iwd~~~~~~~~~~--------~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         223 STVCLADADKKMAVATL--------ASETLPLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             TEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             CcceEEeeecccceeee--------ecccccceeeeecCCCCEEEEEc-CCceEEE
Confidence            99999999999999888        67888999999999999888775 5655554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=246.52  Aligned_cols=218  Identities=14%  Similarity=0.156  Sum_probs=188.9

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.|++||+..........+..|...+..++|+|    ++.++++++.|+.|++|++.+                   .
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~d~~i~~~~~~~-------------------~  173 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISP----DSKVCFSCCSDGNIAVWDLHN-------------------Q  173 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------T
T ss_pred             ccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccc-------------------c
Confidence            48999999988766566777888999999999999    899999999999999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      +......+|..+|.+++|++++.  .+++++.|+.+++||+++..   ......                       +..
T Consensus       174 ~~~~~~~~~~~~v~~l~~s~~~~--~~~~~~~d~~v~i~d~~~~~---~~~~~~-----------------------~~~  225 (337)
T d1gxra_         174 TLVRQFQGHTDGASCIDISNDGT--KLWTGGLDNTVRSWDLREGR---QLQQHD-----------------------FTS  225 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTE---EEEEEE-----------------------CSS
T ss_pred             ccccccccccccccccccccccc--ccccccccccccccccccce---eecccc-----------------------ccc
Confidence            56667778999999999999998  99999999999999986532   111111                       011


Q ss_pred             CceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          161 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       161 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|.+++|+|+++++++++.|+.|++||+++++... ...|...|++++|+|++++|++++.||.|++||+.+++.+..+ 
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-  303 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-  303 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             ceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-
Confidence            37899999999999999999999999999887654 4569999999999999999999999999999999999988776 


Q ss_pred             CCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          241 PVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       241 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .|...|.+++|+|++++|++|+.||+|++||
T Consensus       304 --------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         304 --------KESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             --------ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             --------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence                    5677899999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-38  Score=240.17  Aligned_cols=253  Identities=19%  Similarity=0.276  Sum_probs=188.9

Q ss_pred             eeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc--------cee
Q 023643            6 TNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV--------QQL   77 (279)
Q Consensus         6 ~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--------~~~   77 (279)
                      |.|.++.   .....+.+|.++|++++|+|    ++++||+|+.||+|+|||+.++.....+.......        ...
T Consensus         1 k~w~p~~---~~~~~L~GH~~~I~~l~~sp----~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~   73 (317)
T d1vyhc1           1 KEWIPRP---PEKYALSGHRSPVTRVIFHP----VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL   73 (317)
T ss_dssp             CCCCCCS---SCSCEEECCSSCEEEEEECS----SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE
T ss_pred             CccCCCC---CccEEEcCCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccc
Confidence            4676655   33457889999999999999    89999999999999999998876554333211110        000


Q ss_pred             e---------------eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceE
Q 023643           78 L---------------GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVL  142 (279)
Q Consensus        78 ~---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  142 (279)
                      +               ..+....+.+|...+.++.|+|++.  .+++++.|+.+++||+++...   ...+.++ ...+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~---~~~~~~~-~~~~~  147 (317)
T d1vyhc1          74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYC---VKTFTGH-REWVR  147 (317)
T ss_dssp             EEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCE---EEEEECC-SSCEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeccCCCc--eEEeeccCcceeEeeccccee---eeEEccC-CCcce
Confidence            0               0233334556788889999999887  899999999999999875421   1111111 11111


Q ss_pred             Eee---------------------cCCCCCccccCCCCCCceeEEEcCC--------------------CCeEEEecCCC
Q 023643          143 DLV---------------------NHQHKGPWGALSPVPENNAIAVDPQ--------------------GGAIFSAAGDS  181 (279)
Q Consensus       143 ~~~---------------------~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~  181 (279)
                      .+.                     ............+...+.++.++|+                    +..+++++.|+
T Consensus       148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             eeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            110                     0000000111223345667777664                    35688999999


Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      .|++||+++++++..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+        .+|...|++++|+|
T Consensus       228 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--------NAHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE--------ECCSSCEEEEEECS
T ss_pred             EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE--------cCCCCCEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999998        68889999999999


Q ss_pred             CCCEEEEEcCcceEEeCC
Q 023643          262 SESWLVRVRATNYVILFS  279 (279)
Q Consensus       262 ~~~~l~~~~~d~~i~~wd  279 (279)
                      ++++|++|+.||+|++||
T Consensus       300 ~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEeC
Confidence            999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-37  Score=242.67  Aligned_cols=262  Identities=13%  Similarity=0.179  Sum_probs=179.0

Q ss_pred             CCceeeeccccccc--cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRK--SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      ++...+|+....+.  ..+.....|.+.|++++|+|    +|++||+|+ |++|+|||+.++.....+........... 
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~----dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~-  110 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN----DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE-  110 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT----TSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECC----CCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc-
Confidence            56778888654331  11223336999999999999    999999986 89999999988654433322211111110 


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce-------e--eecc----------Ccccc
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP-------I--NLQG----------NHVKP  140 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------~--~~~~----------~~~~~  140 (279)
                      .........|...|.+++|+|+++  +|++|+.||.|++|+..........       .  ....          .....
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             --------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCC--cceecccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence            112233446888999999999998  9999999999999998653210000       0  0000          00000


Q ss_pred             eEEe-------------------ecCCC------------CCccc----------------cCCCCCCceeEEEcCCCCe
Q 023643          141 VLDL-------------------VNHQH------------KGPWG----------------ALSPVPENNAIAVDPQGGA  173 (279)
Q Consensus       141 ~~~~-------------------~~~~~------------~~~~~----------------~~~~~~~i~~~~~~~~~~~  173 (279)
                      +++.                   .....            -..+.                ...+...|.+++|+|++++
T Consensus       189 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  268 (388)
T d1erja_         189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  268 (388)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             eeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE
Confidence            0000                   00000            00000                0123457899999999999


Q ss_pred             EEEecCCCeEEEEecCCCc------------EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          174 IFSAAGDSCAYCWDVESSR------------IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       174 l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                      |++++.|+.|++||+++++            .......|...|.+++|+|++++|++|+.||.|++||+++++++.++  
T Consensus       269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l--  346 (388)
T d1erja_         269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--  346 (388)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE--
Confidence            9999999999999997653            23445568899999999999999999999999999999999999998  


Q ss_pred             CccccccCcceeeeEEEE------cCCCCEEEEEcCcceEEeCC
Q 023643          242 VKDKQLKGVISCVSCITL------DASESWLVRVRATNYVILFS  279 (279)
Q Consensus       242 ~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~~wd  279 (279)
                            .+|...|.++++      +|++.+|++|+.||+|++||
T Consensus       347 ------~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         347 ------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             ------ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             ------eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence                  688889998875      67899999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-37  Score=238.56  Aligned_cols=220  Identities=14%  Similarity=0.233  Sum_probs=184.6

Q ss_pred             CCceeeecccccccc-c--eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKS-I--LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      ||.|+|||++..... .  ......|.+.|.+++|+|    ++++|++|+.||+|++||+....                
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~----dg~~l~s~~~dg~i~iwd~~~~~----------------  130 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPT----------------  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC-----------------
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC----CCCEEEEeecccccccccccccc----------------
Confidence            789999998754321 1  223457889999999999    99999999999999999987632                


Q ss_pred             eccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           79 GIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        79 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       .+....+..|...+..++|+|++.  ++++++.|+.|++|++++..   .......+                      
T Consensus       131 -~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~---~~~~~~~~----------------------  182 (337)
T d1gxra_         131 -PRIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQT---LVRQFQGH----------------------  182 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE---EEEEECCC----------------------
T ss_pred             -cccccccccccccccccccccccc--cccccccccccccccccccc---cccccccc----------------------
Confidence             334456778999999999999998  99999999999999986532   11121111                      


Q ss_pred             CCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          159 VPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ...+.+++|++++..+++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.|+.+++||+++++....
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccc
Confidence            1137899999999999999999999999999999888776 888999999999999999999999999999998877644


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                               ..|...|++++|+|++++|++|+.||.|++||
T Consensus       262 ---------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd  293 (337)
T d1gxra_         262 ---------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             ---------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ---------cccccccceEEECCCCCEEEEEeCCCeEEEEE
Confidence                     47888999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-36  Score=231.44  Aligned_cols=231  Identities=12%  Similarity=0.083  Sum_probs=175.8

Q ss_pred             ceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccc-cCCccCeEE
Q 023643           17 ILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HGHDGPAYD   95 (279)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~   95 (279)
                      ..+.+.+|..+|++++|+|    ++++|++|+.||+|++||+.+                   ++.+..+ .+|...|.+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~----dg~~l~s~s~Dg~v~vWd~~~-------------------~~~~~~~~~~h~~~v~~   60 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSA----DGKTLFSADAEGHINSWDIST-------------------GISNRVFPDVHATMITG   60 (299)
T ss_dssp             EEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------CCEEECSSCSCSSCEEE
T ss_pred             cceEcCCCCCCcEEEEECC----CCCEEEEEcCCCeEEEEECCC-------------------CcEEEEEcCCCCCcEEE
Confidence            4678899999999999999    999999999999999999987                   4444555 468999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeec-C----------CCCCcc-----ccCCCC
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVN-H----------QHKGPW-----GALSPV  159 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~-----~~~~~~  159 (279)
                      ++|+|++.   +++++.|+.+++|+............... ....+..+.. +          .....|     ......
T Consensus        61 v~~~~~g~---~~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~  136 (299)
T d1nr0a2          61 IKTTSKGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANK-LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS  136 (299)
T ss_dssp             EEECTTSC---EEEEETTTEEEEECSSSSSSCTTSCCEEE-CSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred             EEeeccce---eecccceeeEEEeccCCcccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            99999985   66777899999999764321111111000 0001111100 0          000000     011122


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEE
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      ..+.+++|+|+++++++++.|+.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++.....
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            357899999999999999999999999998876554 3446899999999999999999999999999999988776654


Q ss_pred             ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ...     +.+|...|++++|+|++++|++|+.||.|++||
T Consensus       217 ~~~-----~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         217 TNS-----WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             CCC-----CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccc-----ccccccccccccccccccceEEEcCCCEEEEEE
Confidence            432     267889999999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-36  Score=237.10  Aligned_cols=210  Identities=16%  Similarity=0.152  Sum_probs=167.1

Q ss_pred             cccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCC
Q 023643           24 LTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE  103 (279)
Q Consensus        24 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  103 (279)
                      ..++|++++|+|    ++++||+|+.||.|+||+..+..                 ...+..+++|.++|.+++|+|+++
T Consensus         6 ~~~pIt~~~~s~----dg~~la~~~~~~~i~iw~~~~~~-----------------~~~~~~l~gH~~~V~~l~fsp~~~   64 (371)
T d1k8kc_           6 LVEPISCHAWNK----DRTQIAICPNNHEVHIYEKSGNK-----------------WVQVHELKEHNGQVTGVDWAPDSN   64 (371)
T ss_dssp             CSSCCCEEEECT----TSSEEEEECSSSEEEEEEEETTE-----------------EEEEEEEECCSSCEEEEEEETTTT
T ss_pred             CCCCeEEEEECC----CCCEEEEEeCCCEEEEEECCCCC-----------------EEEEEEecCCCCCEEEEEECCCCC
Confidence            457899999999    99999999999999999997632                 345677889999999999999998


Q ss_pred             ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeE
Q 023643          104 DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCA  183 (279)
Q Consensus       104 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  183 (279)
                        +|++++.|++|++||++... ........++                      ...|.+++|+|+++.|++++.|+.|
T Consensus        65 --~l~s~s~D~~i~vWd~~~~~-~~~~~~~~~~----------------------~~~v~~i~~~p~~~~l~~~s~d~~i  119 (371)
T d1k8kc_          65 --RIVTCGTDRNAYVWTLKGRT-WKPTLVILRI----------------------NRAARCVRWAPNEKKFAVGSGSRVI  119 (371)
T ss_dssp             --EEEEEETTSCEEEEEEETTE-EEEEEECCCC----------------------SSCEEEEEECTTSSEEEEEETTSSE
T ss_pred             --EEEEEECCCeEEEEeecccc-cccccccccc----------------------cccccccccccccccceeecccCcc
Confidence              99999999999999986421 1111111111                      1237999999999999999999999


Q ss_pred             EEEecCCCcE----EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC----------ccccccC
Q 023643          184 YCWDVESSRI----KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV----------KDKQLKG  249 (279)
Q Consensus       184 ~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~~~~~  249 (279)
                      ++|++.....    ......|...|.+++|+|++++|++|+.|++|++||+............          .......
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  199 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             eeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence            9999876543    2344568899999999999999999999999999998654321111000          0112267


Q ss_pred             cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          250 VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       250 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |...|.+++|+|++++|++++.|+.|++||
T Consensus       200 ~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         200 SCGWVHGVCFSANGSRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             ccCcEEEEEeecccccccccccCCcceEEe
Confidence            888999999999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=227.53  Aligned_cols=227  Identities=15%  Similarity=0.207  Sum_probs=175.3

Q ss_pred             CCCceeeeccccccccc------eeeeeecccceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccCCc
Q 023643            1 MCGDSTNWDEDAYRKSI------LKEREILTRTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      .||+|+|||........      ...+..|.++|.+++|+|    ++.+|++++  .++.+++|+.++            
T Consensus        85 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~~~~~~~~~~~~~~------------  148 (325)
T d1pgua1          85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF----EGRRLCVVGEGRDNFGVFISWDS------------  148 (325)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT----TSSEEEEEECCSSCSEEEEETTT------------
T ss_pred             CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC----CCCccceeeccccceEEEEeecc------------
Confidence            48999999976543211      123456888999999999    899888765  467899999987            


Q ss_pred             ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           73 KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                             ++.+..+.+|...|.+++|+|+++ .++++++.|+.+++|+++.....   .......               
T Consensus       149 -------~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~---~~~~~~~---------------  202 (325)
T d1pgua1         149 -------GNSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFS---ASDRTHH---------------  202 (325)
T ss_dssp             -------CCEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEE---EEECSSS---------------
T ss_pred             -------cccceeeeeccccccccccccccc-ceEEEeecccccccccccccccc---eeccccc---------------
Confidence                   566778889999999999999987 35789999999999997543211   1111110               


Q ss_pred             cccCCCCCCceeEEEcCC-CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEc---CCCcEEEEecCCCeEEEE
Q 023643          153 WGALSPVPENNAIAVDPQ-GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVAR---NSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~~~~~d~~i~vw  228 (279)
                          .+...|.+++|+|+ +.++++++.|+.|++||+++++.+..+++|..++..+.|+   |++++|++++.|+.|+||
T Consensus       203 ----~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw  278 (325)
T d1pgua1         203 ----KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW  278 (325)
T ss_dssp             ----CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             ----CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence                11224799999996 5788999999999999999999999999988877666555   689999999999999999


Q ss_pred             eCCCCceEEEecCCccccccCcceeeeEEEEcCC-CCEEEEEcCcceEEeCC
Q 023643          229 DCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS-ESWLVRVRATNYVILFS  279 (279)
Q Consensus       229 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd  279 (279)
                      |+++++++..+..+      .+...+..+++.+. +.+|++++.||.|++||
T Consensus       279 d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         279 DVTTSKCVQKWTLD------KQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             ETTTTEEEEEEECC------TTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ECCCCCEEEEEEec------CCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            99999999888542      33333444444432 34789999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.5e-34  Score=217.18  Aligned_cols=239  Identities=12%  Similarity=0.114  Sum_probs=169.6

Q ss_pred             CCCceeeeccccccccceeee-eecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccc-------------
Q 023643            1 MCGDSTNWDEDAYRKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLP-------------   66 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------   66 (279)
                      .||.|++||+++.+.  ++.+ ..|...|++++|+|    ++.+ ++++.|+.+++|+.........             
T Consensus        32 ~Dg~v~vWd~~~~~~--~~~~~~~h~~~v~~v~~~~----~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d1nr0a2          32 AEGHINSWDISTGIS--NRVFPDVHATMITGIKTTS----KGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG  104 (299)
T ss_dssp             TTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECT----TSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred             CCCeEEEEECCCCcE--EEEEcCCCCCcEEEEEeec----ccee-ecccceeeEEEeccCCccccccccccccccccccc
Confidence            489999999887643  4444 46899999999999    7765 5566789999999865432211             


Q ss_pred             cccCCcccce---------eeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCc
Q 023643           67 LGLSNSKVQQ---------LLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNH  137 (279)
Q Consensus        67 ~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~  137 (279)
                      +.+.+....-         ++........ .....+.+++|+|+++  +|++++.||.|++||++.......  ....  
T Consensus       105 ~~~s~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~s~~~~--~l~~g~~dg~i~~~d~~~~~~~~~--~~~~--  177 (299)
T d1nr0a2         105 LAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQ--FVAVGGQDSKVHVYKLSGASVSEV--KTIV--  177 (299)
T ss_dssp             EEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSC--EEEEEETTSEEEEEEEETTEEEEE--EEEE--
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccc--cccccccccccccccccccccccc--cccc--
Confidence            1111111100         0000000111 1334678899999988  999999999999999864311110  0001  


Q ss_pred             ccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE---EeecCCcceEEEEEcCCCc
Q 023643          138 VKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM---VFKGHSDYLHCIVARNSTN  214 (279)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~i~~~~~~~  214 (279)
                                          +...|++++|+|++.+|++++.|+.|++||+.++....   .+.+|...|++++|+|+++
T Consensus       178 --------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         178 --------------------HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             --------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             --------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                11237999999999999999999999999998876554   4567899999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          215 QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       215 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +|++|+.||.|++||+++++....+...     ..+...+.++.| +++.+|++|+.|+.|++||
T Consensus       238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKPSDHPIIIKG-----AHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETT-----SSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCEEEEEECCCCCcceEEEec-----CCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            9999999999999999987654433211     234456776655 5678999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-34  Score=216.08  Aligned_cols=220  Identities=16%  Similarity=0.125  Sum_probs=164.1

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      +.++++.+|..+|++++|+|        |++|+.||+|++||+.+.                        ..+|...|.+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~   51 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVS   51 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEE------------------------ECCCCSCEEE
T ss_pred             ceeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEE
Confidence            56789999999999999987        899999999999998762                        2468889999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCccee--------------------eeccCcccceEE---------ee-
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPI--------------------NLQGNHVKPVLD---------LV-  145 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------------~~~~~~~~~~~~---------~~-  145 (279)
                      +.++++.   .+++++.|+++++|++..........                    .........+..         +. 
T Consensus        52 ~~~~~~~---~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (287)
T d1pgua2          52 LDNSKAQ---EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL  128 (287)
T ss_dssp             EECCSTT---CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EEecCCC---eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeec
Confidence            9998765   58899999999999875421110000                    000000000000         00 


Q ss_pred             --------cCCC--CCccc----------cCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE-EeecCCcce
Q 023643          146 --------NHQH--KGPWG----------ALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM-VFKGHSDYL  204 (279)
Q Consensus       146 --------~~~~--~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i  204 (279)
                              ....  -..|.          ...+...+++++|+|++.+|++|+.||.|++||+.+++.+. .+.+|..+|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence                    0000  00111          12234568999999999999999999999999999887765 467899999


Q ss_pred             EEEEEcCC----------CcEEEEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcc
Q 023643          205 HCIVARNS----------TNQIVTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       205 ~~i~~~~~----------~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                      .+++|+|.          +.+|++|+.|++|++||++++ +.+..+        .+|...|++++|+|++ .|++++.|+
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~--------~~h~~~V~~v~~~~~~-~l~s~g~D~  279 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--------NAHKDGVNNLLWETPS-TLVSSGADA  279 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--------TSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe--------CCCCCCeEEEEECCCC-EEEEEECCC
Confidence            99999874          468999999999999999874 445544        6899999999999986 588999999


Q ss_pred             eEEeCC
Q 023643          274 YVILFS  279 (279)
Q Consensus       274 ~i~~wd  279 (279)
                      .|++|+
T Consensus       280 ~v~iW~  285 (287)
T d1pgua2         280 CIKRWN  285 (287)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=216.04  Aligned_cols=247  Identities=11%  Similarity=0.117  Sum_probs=169.6

Q ss_pred             eeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccccccc------CC---------------------
Q 023643           19 KEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGL------SN---------------------   71 (279)
Q Consensus        19 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~---------------------   71 (279)
                      ...++|...|+++++++      +++++++.|++|+|||..+.........      ..                     
T Consensus         8 ~~~~~H~~~I~~v~~~~------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             ecCCcccCccEEEEEeC------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            45678999999999876      6899999999999999765432211100      00                     


Q ss_pred             ------cccceeee---cc----------ccccccCCccCeEEEEecCCCC---ceEEEEeeCCCcEEEeecCCCccCcc
Q 023643           72 ------SKVQQLLG---IE----------PDGFLHGHDGPAYDVKFYGGNE---DALLLSCGDDGRICGWRWKEFTESKV  129 (279)
Q Consensus        72 ------~~~~~~~~---~~----------~~~~~~~h~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~  129 (279)
                            +..-.++.   ..          .......+...+..++|.++..   ..++++++.||++++|++........
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence                  00000000   00          0011122445677888877542   24899999999999999864322111


Q ss_pred             eeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe------ecCCcc
Q 023643          130 PINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF------KGHSDY  203 (279)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~  203 (279)
                      ...........+....       .....+...+++++|+|++ +|++|+.|+.|++||+.+++++..+      .+|..+
T Consensus       162 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~  233 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTV-------ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  233 (393)
T ss_dssp             HTTTCCCCEEEEEEEE-------CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             eeeeeeccceecccce-------ecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccce
Confidence            1111111111110000       0111222347899999987 8999999999999999999887655      468899


Q ss_pred             eEEEEEcCCCcEEEEecCCCe---EEEEeCCCCceEEEecCCc-----cccccCcceeeeEEEEcCCCCEEEEEcCcceE
Q 023643          204 LHCIVARNSTNQIVTGSEDGT---ARIWDCKSGKCIKVIDPVK-----DKQLKGVISCVSCITLDASESWLVRVRATNYV  275 (279)
Q Consensus       204 i~~i~~~~~~~~l~~~~~d~~---i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  275 (279)
                      |++++|+|++++|++|+.|++   |++||+++++++..+....     ...+.+|...|++++|+|++++|++|+.|++|
T Consensus       234 V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             EEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            999999999999999998874   9999999999988875332     12346899999999999999999999999999


Q ss_pred             EeCC
Q 023643          276 ILFS  279 (279)
Q Consensus       276 ~~wd  279 (279)
                      ++||
T Consensus       314 ~vWd  317 (393)
T d1sq9a_         314 RFWD  317 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-32  Score=211.25  Aligned_cols=227  Identities=11%  Similarity=0.100  Sum_probs=171.1

Q ss_pred             eeeeccccccccceeeeeec-ccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            5 STNWDEDAYRKSILKEREIL-TRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      |+.|+...........+.+| ...|++++|+|.  .++.+||+|+.||+|+|||+..........           ....
T Consensus        42 i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~--~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~-----------~~~~  108 (325)
T d1pgua1          42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI--KGSQYLCSGDESGKVIVWGWTFDKESNSVE-----------VNVK  108 (325)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSS--TTCCEEEEEETTSEEEEEEEEEEGGGTEEE-----------EEEE
T ss_pred             EEEEeCCCCCccceEEEeCCCCCCEEEEEEeeC--CCCCEEEEEeCCCCEEEeeecCCcceeeee-----------cccc
Confidence            56677554444445566676 467999999983  256799999999999999997643222111           1122


Q ss_pred             ccccCCccCeEEEEecCCCCceEEEEee--CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           84 GFLHGHDGPAYDVKFYGGNEDALLLSCG--DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        84 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      ..+..|.++|.+++|+++++  +|++++  .++.+++|++++.   .....+.++                      ...
T Consensus       109 ~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h----------------------~~~  161 (325)
T d1pgua1         109 SEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSG---NSLGEVSGH----------------------SQR  161 (325)
T ss_dssp             EEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTC---CEEEECCSC----------------------SSC
T ss_pred             cccccccCcEEEEEECCCCC--ccceeeccccceEEEEeeccc---ccceeeeec----------------------ccc
Confidence            33556889999999999998  776665  4778999997643   222233221                      123


Q ss_pred             ceeEEEcCCCCe-EEEecCCCeEEEEecCCCcEEEEee---cCCcceEEEEEcCC-CcEEEEecCCCeEEEEeCCCCceE
Q 023643          162 NNAIAVDPQGGA-IFSAAGDSCAYCWDVESSRIKMVFK---GHSDYLHCIVARNS-TNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       162 i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      |++++|+|++.. +++++.|+.+++||....+....+.   .|...|.+++|+|+ +.+|++++.|+.|++||+++++.+
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            789999998875 6778999999999998887666553   56788999999996 789999999999999999999999


Q ss_pred             EEecCCccccccCcceeeeEEEEc---CCCCEEEEEcCcceEEeCC
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLD---ASESWLVRVRATNYVILFS  279 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+        .+|...+.++.|+   |++++|++++.|+.|++||
T Consensus       242 ~~l--------~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         242 KYI--------EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             EEC--------CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             ccc--------cccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence            998        4555555555554   6899999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=216.90  Aligned_cols=255  Identities=15%  Similarity=0.180  Sum_probs=174.0

Q ss_pred             CCCceeeeccccccccce--------eeeeecccceEEEEECCCCC-CCCCEEEEecCCCcEEEEeCCCCCcccc-cccC
Q 023643            1 MCGDSTNWDEDAYRKSIL--------KEREILTRTVFRTVWGPSKD-GSPDTIVIASSDGSITSYSIPSCISKLP-LGLS   70 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~   70 (279)
                      +||.|++|+.........        .....+...+..++|.+... ..+.++++++.||++++|++........ ....
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            489999998654432111        11123456788888877311 1246889999999999999865322111 1111


Q ss_pred             CcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCC
Q 023643           71 NSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHK  150 (279)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (279)
                      .......  .........+...+.+++|+|++   +|++|+.||+|++||+++..   ....+....             
T Consensus       167 ~~~~~~~--~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~~~~~---~~~~~~~~~-------------  225 (393)
T d1sq9a_         167 WSPTLEL--QGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLR---PLYNFESQH-------------  225 (393)
T ss_dssp             CCCEEEE--EEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTE---EEEEEECCC-------------
T ss_pred             eccceec--ccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEeecccc---ccccccccc-------------
Confidence            1111111  22233344566779999999987   89999999999999986532   111111110             


Q ss_pred             CccccCCCCCCceeEEEcCCCCeEEEecCCC---eEEEEecCCCcEEEEee-------------cCCcceEEEEEcCCCc
Q 023643          151 GPWGALSPVPENNAIAVDPQGGAIFSAAGDS---CAYCWDVESSRIKMVFK-------------GHSDYLHCIVARNSTN  214 (279)
Q Consensus       151 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~  214 (279)
                         ....+...|++++|+|++++|++|+.|+   .|++||+++++.+..+.             +|.+.|++++|+|+++
T Consensus       226 ---~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~  302 (393)
T d1sq9a_         226 ---SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  302 (393)
T ss_dssp             ------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             ---ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence               0011233589999999999999999886   59999999998887764             7999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceEEEecCCcccc--------c-----cCcceeeeEEEEcCCC----------CEEEEEcC
Q 023643          215 QIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQ--------L-----KGVISCVSCITLDASE----------SWLVRVRA  271 (279)
Q Consensus       215 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~-----~~~~~~v~~~~~~~~~----------~~l~~~~~  271 (279)
                      +|++|+.|++|+|||+++++++.++..|....        +     ......+.++.|.+.+          ..|++++.
T Consensus       303 ~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL  382 (393)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred             eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEc
Confidence            99999999999999999999999996553210        0     0012346667766542          45888899


Q ss_pred             cceEEeCC
Q 023643          272 TNYVILFS  279 (279)
Q Consensus       272 d~~i~~wd  279 (279)
                      |+.|++|.
T Consensus       383 d~~ir~~~  390 (393)
T d1sq9a_         383 DRSIRWFR  390 (393)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEe
Confidence            99999884

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-32  Score=207.63  Aligned_cols=235  Identities=18%  Similarity=0.264  Sum_probs=170.7

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCc--------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNS--------   72 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------   72 (279)
                      .||+|+|||+++.  +.+..+.+|...|.+++|+|      ++|++|+.|+.+++|+...............        
T Consensus        35 ~Dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~~~------~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (342)
T d2ovrb2          35 DDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH  106 (342)
T ss_dssp             TTSCEEEEETTTC--CEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             CCCeEEEEECCCC--CEEEEEeCCCCCEEEEEeCC------CccccceecccccccccccccceecccccceeEeeeecc
Confidence            4899999999876  44788899999999999988      4999999999999999876432220000000        


Q ss_pred             ---------------------c-----------------------------cceee---eccccccccCCccCeEEEEec
Q 023643           73 ---------------------K-----------------------------VQQLL---GIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        73 ---------------------~-----------------------------~~~~~---~~~~~~~~~~h~~~v~~~~~~   99 (279)
                                           .                             .-.+.   ....+..+.+|...+..+.+ 
T Consensus       107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-  185 (342)
T d2ovrb2         107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-  185 (342)
T ss_dssp             TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-
T ss_pred             cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC-
Confidence                                 0                             00000   02233445556665555544 


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                       ++.  +|++++.||.|++||++..   ........+.                      ..+.+++++  +++|++++.
T Consensus       186 -~~~--~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~----------------------~~v~~~~~~--~~~l~s~s~  235 (342)
T d2ovrb2         186 -DGI--HVVSGSLDTSIRVWDVETG---NCIHTLTGHQ----------------------SLTSGMELK--DNILVSGNA  235 (342)
T ss_dssp             -CSS--EEEEEETTSCEEEEETTTC---CEEEEECCCC----------------------SCEEEEEEE--TTEEEEEET
T ss_pred             -CCC--EEEEEeCCCeEEEeecccc---eeeeEecccc----------------------cceeEEecC--CCEEEEEcC
Confidence             455  8999999999999997643   2222222211                      125666665  469999999


Q ss_pred             CCeEEEEecCCCcEEEEeec---CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643          180 DSCAYCWDVESSRIKMVFKG---HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      |+.|++||+...+....+..   |...+.++.++  ++++++|+.||+|++||+++++.++.+.....   .+|...|++
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~---~~~~~~v~~  310 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---GGSGGVVWR  310 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT---GGGTCEEEE
T ss_pred             CCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccC---CCCCCCEEE
Confidence            99999999999888887765   45566666664  67999999999999999999999888743221   467889999


Q ss_pred             EEEcCCCCEEEEEcCcce----EEeCC
Q 023643          257 ITLDASESWLVRVRATNY----VILFS  279 (279)
Q Consensus       257 ~~~~~~~~~l~~~~~d~~----i~~wd  279 (279)
                      ++|+|++.+|++|+.||+    |++||
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence            999999999999999985    88886

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-32  Score=208.81  Aligned_cols=198  Identities=15%  Similarity=0.249  Sum_probs=156.8

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccc------------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLG------------   68 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------   68 (279)
                      .||.|+|||+.+..  .+..+..|...|.+++|+|    ++.++++|+.|+.+++|+...........            
T Consensus        75 ~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~v~~~~----~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (340)
T d1tbga_          75 QDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAP----SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC  148 (340)
T ss_dssp             TTTEEEEEETTTTE--EEEEEECSCSCEEEEEECT----TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEE
T ss_pred             CCCceeeeecccce--eEEEEecccccEEeeEeec----cceeeeeecccceeecccccccccccccceecccccccccc
Confidence            48999999988774  4778888999999999999    99999999999999999976543221000            


Q ss_pred             -------------------------------------------cCCcc--------cc--eee---eccccccccCCccC
Q 023643           69 -------------------------------------------LSNSK--------VQ--QLL---GIEPDGFLHGHDGP   92 (279)
Q Consensus        69 -------------------------------------------~~~~~--------~~--~~~---~~~~~~~~~~h~~~   92 (279)
                                                                 ..+..        ..  .++   .++++..+.+|.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~  228 (340)
T d1tbga_         149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD  228 (340)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCC
Confidence                                                       00000        00  000   13445667789999


Q ss_pred             eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCC
Q 023643           93 AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGG  172 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (279)
                      |.+++|+|+++  +|++++.||.|++|+++...   ........                    .+...|.+++|+|+++
T Consensus       229 i~~v~~~p~~~--~l~s~s~d~~i~~~~~~~~~---~~~~~~~~--------------------~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         229 INAICFFPNGN--AFATGSDDATCRLFDLRADQ---ELMTYSHD--------------------NIICGITSVSFSKSGR  283 (340)
T ss_dssp             EEEEEECTTSS--EEEEEETTSCEEEEETTTTE---EEEEECCT--------------------TCCSCEEEEEECSSSC
T ss_pred             eEEEEECCCCC--EEEEEeCCCeEEEEeecccc---cccccccc--------------------cccCceEEEEECCCCC
Confidence            99999999998  99999999999999986432   11111110                    1112378999999999


Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      +|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||+|+|||
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-31  Score=205.39  Aligned_cols=236  Identities=16%  Similarity=0.210  Sum_probs=175.3

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||+|+|||+++.  +.+..+.+|.++|++++|+|    + .+|++|+.||+|++|+....                   
T Consensus        31 ~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~l~~s~----~-~~l~s~s~D~~i~iw~~~~~-------------------   84 (355)
T d1nexb2          31 DDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAH----G-GILVSGSTDRTVRVWDIKKG-------------------   84 (355)
T ss_dssp             TTTEEEEEETTTT--EEEEEEECCSSCEEEEEEET----T-TEEEEEETTCCEEEEETTTT-------------------
T ss_pred             CCCeEEEEECCCC--cEEEEEECCCCCEEEEEEcC----C-CEEEEEeccccccccccccc-------------------
Confidence            4899999999876  45788999999999999998    4 58999999999999999873                   


Q ss_pred             ccccccc--CCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCcc-ccCC
Q 023643           81 EPDGFLH--GHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPW-GALS  157 (279)
Q Consensus        81 ~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  157 (279)
                      .......  .+........+.+++.  ++++++.|+.|++|+++.........   ................... ....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          85 CCTHVFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHG---EEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC--------------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ccccccccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccc---ccceeccceeccccccceeeeeee
Confidence            2222222  2334455667778776  99999999999999987542211111   0000000000000000000 0000


Q ss_pred             CCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEE
Q 023643          158 PVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIK  237 (279)
Q Consensus       158 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  237 (279)
                      +  ......+.+++++++++..|+.|++||+++++.+..+.++...+.++.++|++.++++++.|+.|++||+++++.+.
T Consensus       160 ~--~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         160 H--MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             C--SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             c--cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence            0  11233456678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+        .+|...|.+++|+  +++|++|+.||.|++||
T Consensus       238 ~~--------~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         238 TL--------QGHTALVGLLRLS--DKFLVSAAADGSIRGWD  269 (355)
T ss_dssp             EE--------CCCSSCCCEEEEC--SSEEEEECTTSEEEEEE
T ss_pred             cc--------ccccccccccccc--cceeeeeeccccccccc
Confidence            88        6888899999987  47899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-31  Score=201.11  Aligned_cols=228  Identities=19%  Similarity=0.310  Sum_probs=169.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcc-------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSK-------   73 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------   73 (279)
                      .||+|+|||+++.  +.+..+.+|..+|++++|++      ++|++|+.||.|++|++...............       
T Consensus        33 ~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~v~~~~------~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (293)
T d1p22a2          33 RDNTIKIWDKNTL--ECKRILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN  104 (293)
T ss_dssp             SSSCEEEEESSSC--CEEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred             CCCeEEEEECCCC--cEEEEEecCCCCEeeeeccc------ceeeccccccccccccccccccccccccccccccccccc
Confidence            4899999999876  45788899999999998754      79999999999999999876433311111100       


Q ss_pred             -----------cceeee------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccC
Q 023643           74 -----------VQQLLG------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGN  136 (279)
Q Consensus        74 -----------~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  136 (279)
                                 ...++.      ......+..|...+..+.+.+.    .+++++.|+.|++||+++.   +....+.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~d~~i~~~d~~~~---~~~~~~~~~  177 (293)
T d1p22a2         105 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTC---EFVRTLNGH  177 (293)
T ss_dssp             TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT----EEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred             ccceeecccccceeEeeccccccccccccccccccccccceeccc----ccccccCCCceeeecCCCC---cEEEEEccc
Confidence                       000100      1122334567788888877654    7889999999999998653   222222221


Q ss_pred             cccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE
Q 023643          137 HVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI  216 (279)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  216 (279)
                      ..                      .+..+.++  +..+++++.|+.|++||+++.+.+..+.+|...+.+  +++++.+|
T Consensus       178 ~~----------------------~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l  231 (293)
T d1p22a2         178 KR----------------------GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRI  231 (293)
T ss_dssp             SS----------------------CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEE
T ss_pred             cc----------------------ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEE
Confidence            11                      24555554  568999999999999999999999999989888876  45678899


Q ss_pred             EEecCCCeEEEEeCCCC---------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          217 VTGSEDGTARIWDCKSG---------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       217 ~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++|+.||.|++||+...         .++..+        .+|...|++++|+  +.+|++|+.||+|++||
T Consensus       232 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--------VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--------CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccccccCCceeeEEe--------cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999999999997542         344555        7899999999995  57899999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-31  Score=202.40  Aligned_cols=227  Identities=19%  Similarity=0.303  Sum_probs=166.7

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      +..+.+++|.+.|.+ ++++    ++++||+|+.||+|+|||+.+                   ++++..+.+|.++|.+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~----~g~~l~sgs~Dg~i~vWd~~~-------------------~~~~~~~~~h~~~V~~   62 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQF----CGNRIVSGSDDNTLKVWSAVT-------------------GKCLRTLVGHTGGVWS   62 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEE----ETTEEEEEETTSCEEEEETTT-------------------CCEEEECCCCSSCEEE
T ss_pred             CcCEEECCcCCceEE-EEEE----CCCEEEEEeCCCeEEEEECCC-------------------CCEEEEEeCCCCCEEE
Confidence            446778999999876 4777    789999999999999999998                   6778889999999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee---------e--------ccCcccceEEee-------------
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN---------L--------QGNHVKPVLDLV-------------  145 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---------~--------~~~~~~~~~~~~-------------  145 (279)
                      ++|+|+    +|++++.|+.+++|+............         .        .......++...             
T Consensus        63 v~~~~~----~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  138 (342)
T d2ovrb2          63 SQMRDN----IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  138 (342)
T ss_dssp             EEEETT----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             EEeCCC----ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc
Confidence            999874    899999999999999864321000000         0        000000000000             


Q ss_pred             ----------------cCCCCCcccc-------CCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCc
Q 023643          146 ----------------NHQHKGPWGA-------LSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSD  202 (279)
Q Consensus       146 ----------------~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  202 (279)
                                      ....-..++.       ...........+.+++.++++++.|+.|++||++.++++..+.+|..
T Consensus       139 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (342)
T d2ovrb2         139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS  218 (342)
T ss_dssp             CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             cceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccc
Confidence                            0000000000       00011233455566788999999999999999999999999999999


Q ss_pred             ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          203 YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       203 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .+.+++++  +++|++++.|+.|++||+...+....+..+     ..|...+.++.++  ++++++|+.||.|++||
T Consensus       219 ~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         219 LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP-----NKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST-----TSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             ceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccc-----ceeeeceeecccC--CCeeEEEcCCCEEEEEE
Confidence            99988876  569999999999999999999888887543     4566777777775  57899999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-31  Score=204.03  Aligned_cols=233  Identities=14%  Similarity=0.067  Sum_probs=151.6

Q ss_pred             cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEE
Q 023643           16 SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYD   95 (279)
Q Consensus        16 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~   95 (279)
                      +.++...+|.+.|++|+|+|    ++++||+|+.||+|+|||+++...                ........+|.++|.+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp----~~~~L~s~s~Dg~v~iwd~~~~~~----------------~~~~~~~~~h~~~V~~   61 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAK----------------NVDLLQSLRYKHPLLC   61 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEG----GGTEEEEEETTSEEEEEEEETTTT----------------EEEEEEEEECSSCEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeC----CCCEEEEEECCCeEEEEEccCCCc----------------ceEEEEecCCCCCEEE
Confidence            34666788999999999999    899999999999999999976321                1112223369999999


Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeecc--------------------CcccceEEeecCCCCCc---
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQG--------------------NHVKPVLDLVNHQHKGP---  152 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~---  152 (279)
                      ++|+|++. .+|++|+.||.|++|++..............                    .....++++........   
T Consensus        62 v~f~~~~~-~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          62 CNFIDNTD-LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEEESSS-EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EEEeCCCC-CEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeec
Confidence            99998764 4899999999999999865322111100000                    00001111100000000   


Q ss_pred             -cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE------------------------------------
Q 023643          153 -WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM------------------------------------  195 (279)
Q Consensus       153 -~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------------  195 (279)
                       ............+.+.+.+..+++++.|+.|++||++..+...                                    
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v  220 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV  220 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred             ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEE
Confidence             0000001122344455556666666666777777664321000                                    


Q ss_pred             -------------------------EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643          196 -------------------------VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV  250 (279)
Q Consensus       196 -------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  250 (279)
                                               ....|...+.+++|+|++++|++|+.||.|++||+++++.+..+.       ..|
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-------~~~  293 (342)
T d1yfqa_         221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-------KFN  293 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CCS
T ss_pred             EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec-------CCC
Confidence                                     001344568899999999999999999999999999999988873       223


Q ss_pred             ceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          251 ISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       251 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                        .+..++|+|++++|++++.|+.+++|
T Consensus       294 --~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         294 --EDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             --SSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             --CCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence              34567788899999999888776665

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.6e-29  Score=192.87  Aligned_cols=179  Identities=18%  Similarity=0.227  Sum_probs=152.5

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .||.+++||++...  .+..+..|...+.+++|+|    ++.+|++++.|+.|++|++.+                   .
T Consensus       121 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~v~~~~~~~-------------------~  175 (317)
T d1vyhc1         121 RDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ----DGTLIASCSNDQTVRVWVVAT-------------------K  175 (317)
T ss_dssp             TTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-------------------C
T ss_pred             cCcceeEeecccce--eeeEEccCCCcceeeeccc----CCCEEEEEeCCCeEEEEeecc-------------------c
Confidence            37899999988764  4677888999999999999    899999999999999999998                   4


Q ss_pred             cccccccCCccCeEEEEecCCCC------------------ceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceE
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNE------------------DALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVL  142 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~------------------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  142 (279)
                      +....+.+|...+.++.|+|+..                  +.++++++.|+.|++|++++.   .....+.++.     
T Consensus       176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~~~-----  247 (317)
T d1vyhc1         176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHD-----  247 (317)
T ss_dssp             CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEECCS-----
T ss_pred             eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEeCCC-----
Confidence            55666777888888888877532                  137899999999999998643   2233333221     


Q ss_pred             EeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          143 DLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                                       ..|.+++|+|++++|++|+.||.|++||+++++++..+.+|.+.|++++|+|++++|++|+.|
T Consensus       248 -----------------~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         248 -----------------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             -----------------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             -----------------CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence                             137899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEe
Q 023643          223 GTARIWD  229 (279)
Q Consensus       223 ~~i~vwd  229 (279)
                      |+|+|||
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            9999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-28  Score=183.97  Aligned_cols=219  Identities=20%  Similarity=0.359  Sum_probs=161.7

Q ss_pred             eeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEE
Q 023643           18 LKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVK   97 (279)
Q Consensus        18 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~   97 (279)
                      +.....|...|+|++  +    ++++||+|+.||+|+|||+.+                   ++++.++.+|.++|.+++
T Consensus         8 i~~~~~~~~~V~c~~--~----d~~~l~sgs~Dg~i~vWd~~~-------------------~~~~~~l~~H~~~V~~v~   62 (293)
T d1p22a2           8 IHCRSETSKGVYCLQ--Y----DDQKIVSGLRDNTIKIWDKNT-------------------LECKRILTGHTGSVLCLQ   62 (293)
T ss_dssp             EECCCSSCCCEEEEE--C----CSSEEEEEESSSCEEEEESSS-------------------CCEEEEECCCSSCEEEEE
T ss_pred             EeccCCCCCCEEEEE--E----cCCEEEEEeCCCeEEEEECCC-------------------CcEEEEEecCCCCEeeee
Confidence            455667888999865  4    578999999999999999998                   677888999999999998


Q ss_pred             ecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-----------------eccCcccceEEeecCCCCC-ccccCCCC
Q 023643           98 FYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-----------------LQGNHVKPVLDLVNHQHKG-PWGALSPV  159 (279)
Q Consensus        98 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~  159 (279)
                      |.  ++  +|++|+.|+.|++|+++..........                 ........++......... ......+.
T Consensus        63 ~~--~~--~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (293)
T d1p22a2          63 YD--ER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  138 (293)
T ss_dssp             CC--SS--EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred             cc--cc--eeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccc
Confidence            84  44  999999999999999875422111000                 0000001111111110000 00112233


Q ss_pred             CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          160 PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ..+.++.+.  ...+++++.|+.|++||+++++.+..+.++...+..+.++  +.++++++.||.|++||+++.+.+..+
T Consensus       139 ~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         139 AAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee
Confidence            445555554  4578889999999999999999999999999998888775  578999999999999999999998888


Q ss_pred             cCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          240 DPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                              .++...+..  +++++.+|++|+.||.|++||
T Consensus       215 --------~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         215 --------EGHEELVRC--IRFDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             --------CCCSSCEEE--EECCSSEEEEEETTSCEEEEE
T ss_pred             --------cccceeeee--ccccceEEEEEcCCCEEEEEE
Confidence                    566666664  566789999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-29  Score=196.26  Aligned_cols=210  Identities=19%  Similarity=0.256  Sum_probs=150.4

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccc---------cCC
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLG---------LSN   71 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---------~~~   71 (279)
                      .||.|++||....+  .+....+|...|.+++|++    ++..+++++.++.+++||..+........         +.+
T Consensus       141 ~dg~v~i~~~~~~~--~~~~~~~h~~~v~~~~~~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         141 EDRLIRIWDIENRK--IVMILQGHEQDIYSLDYFP----SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             cccccccccccccc--ccccccccccccccccccc----ccccccccccceeeeeeeccccccccccccccccccccccC
Confidence            48999999987764  4667788999999999999    89999999999999999988654332110         111


Q ss_pred             cc-----------cceeee----------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcce
Q 023643           72 SK-----------VQQLLG----------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVP  130 (279)
Q Consensus        72 ~~-----------~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  130 (279)
                      ..           .-.++.          ........+|.++|.+++|+|+++  +|++++.||.|++||++........
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS--EEEEEETTSEEEEEEC---------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC--EEEEEECCCcEEEEeccCCcccccc
Confidence            00           000000          111223346889999999999998  9999999999999998754322111


Q ss_pred             eeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEE-
Q 023643          131 INLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVA-  209 (279)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~-  209 (279)
                      ......  ......           ..+...|.+++|+|++++|++|+.||.|++||+++++++.++++|.+.|.++++ 
T Consensus       293 ~~~~~~--~~~~~~-----------~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         293 KTPNSG--TCEVTY-----------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             --------CEEEEE-----------ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             cccccc--ceeeec-----------ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence            111110  000000           112234899999999999999999999999999999999999999999999975 


Q ss_pred             -----cCCCcEEEEecCCCeEEEEeCC
Q 023643          210 -----RNSTNQIVTGSEDGTARIWDCK  231 (279)
Q Consensus       210 -----~~~~~~l~~~~~d~~i~vwd~~  231 (279)
                           +|++++|++|+.||+|+||+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                 5789999999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-28  Score=190.33  Aligned_cols=201  Identities=17%  Similarity=0.238  Sum_probs=155.0

Q ss_pred             eeeeeecccce-EEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEE
Q 023643           18 LKEREILTRTV-FRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDV   96 (279)
Q Consensus        18 ~~~~~~~~~~v-~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~   96 (279)
                      ..++++|...| +|+  ++    ++++||+|+.||+|+|||+.+                   ++++..+.+|.++|.++
T Consensus         5 ~~tL~GH~~~vitc~--~~----~~~~l~tgs~Dg~i~vWd~~~-------------------~~~~~~l~~H~~~V~~l   59 (355)
T d1nexb2           5 RTTLRGHMTSVITCL--QF----EDNYVITGADDKMIRVYDSIN-------------------KKFLLQLSGHDGGVWAL   59 (355)
T ss_dssp             EEEEECCSSSCEEEE--EE----ETTEEEEEETTTEEEEEETTT-------------------TEEEEEEECCSSCEEEE
T ss_pred             cEEECCcCCCcEEEE--EE----CCCEEEEEeCCCeEEEEECCC-------------------CcEEEEEECCCCCEEEE
Confidence            45688998886 444  45    568999999999999999998                   67788899999999999


Q ss_pred             EecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEE
Q 023643           97 KFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFS  176 (279)
Q Consensus        97 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  176 (279)
                      +|+|++   +|++++.|++|++|++....   ............                    ......+.+++..+++
T Consensus        60 ~~s~~~---~l~s~s~D~~i~iw~~~~~~---~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~  113 (355)
T d1nexb2          60 KYAHGG---ILVSGSTDRTVRVWDIKKGC---CTHVFEGHNSTV--------------------RCLDIVEYKNIKYIVT  113 (355)
T ss_dssp             EEETTT---EEEEEETTCCEEEEETTTTE---EEEEECCCSSCE--------------------EEEEEEEETTEEEEEE
T ss_pred             EEcCCC---EEEEEecccccccccccccc---cccccccccccc--------------------cccccccccccceeee
Confidence            999864   89999999999999986432   111111111100                    1356677888899999


Q ss_pred             ecCCCeEEEEecCCCcEEEEe-----------------------ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 023643          177 AAGDSCAYCWDVESSRIKMVF-----------------------KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSG  233 (279)
Q Consensus       177 ~~~d~~i~i~d~~~~~~~~~~-----------------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  233 (279)
                      ++.|+.|++||+++.......                       ..|...+.  .+.+++++++++..|+.|++||++++
T Consensus       114 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~  191 (355)
T d1nexb2         114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQM  191 (355)
T ss_dssp             EETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             ecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccc
Confidence            999999999999876543321                       12233333  34567899999999999999999999


Q ss_pred             ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          234 KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +.+...        .++...+.++.|+|++.++++++.|+.|++||
T Consensus       192 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  229 (355)
T d1nexb2         192 KCLYIL--------SGHTDRIYSTIYDHERKRCISASMDTTIRIWD  229 (355)
T ss_dssp             EEEEEE--------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cceeee--------eccccccccccccccceeeecccccceEEeee
Confidence            988887        56777889999999999999999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.7e-27  Score=182.74  Aligned_cols=175  Identities=9%  Similarity=-0.042  Sum_probs=136.8

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC--cEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG--SITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      .|.|++||.++...  . .. .|...|.+++|+|    |+++|++++.+.  .|++||..++                  
T Consensus        23 ~g~v~v~d~~~~~~--~-~~-~~~~~v~~~~~sp----Dg~~l~~~~~~~g~~v~v~d~~~~------------------   76 (360)
T d1k32a3          23 RGQAFIQDVSGTYV--L-KV-PEPLRIRYVRRGG----DTKVAFIHGTREGDFLGIYDYRTG------------------   76 (360)
T ss_dssp             TTEEEEECTTSSBE--E-EC-SCCSCEEEEEECS----SSEEEEEEEETTEEEEEEEETTTC------------------
T ss_pred             CCeEEEEECCCCcE--E-Ec-cCCCCEEEEEECC----CCCEEEEEEcCCCCEEEEEECCCC------------------
Confidence            57899999987643  2 23 5889999999999    999988776543  7999999873                  


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPV  159 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (279)
                        ....+..|...|.+++|+|+++  +|++++.++.+++|++....   ....+..+.                      
T Consensus        77 --~~~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~----------------------  127 (360)
T d1k32a3          77 --KAEKFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGK---PTVIERSRE----------------------  127 (360)
T ss_dssp             --CEEECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCC---EEEEEECSS----------------------
T ss_pred             --cEEEeeCCCceEEeeeeccccc--ccceeccccccccccccccc---eeeeeeccc----------------------
Confidence              2345667999999999999998  99999999999999986432   111111111                      


Q ss_pred             CCceeEEEcCCCCeEEEe----------cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          160 PENNAIAVDPQGGAIFSA----------AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       160 ~~i~~~~~~~~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      ..+.+++|+|++++|+.+          ..++.+++||+.+++..... .+...+..++|+|+|++|++++.++.+++||
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEccc
Confidence            126789999999998854          34567999999987665544 4677888999999999999999999999998


Q ss_pred             CCC
Q 023643          230 CKS  232 (279)
Q Consensus       230 ~~~  232 (279)
                      ...
T Consensus       207 ~~~  209 (360)
T d1k32a3         207 RVV  209 (360)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.2e-26  Score=184.83  Aligned_cols=255  Identities=9%  Similarity=-0.014  Sum_probs=166.9

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.|+|||+++.  +.+..+..| ..+..++|+|    ||++|++++.|++|++||+.+......              .
T Consensus        41 dg~v~vwD~~t~--~~~~~l~~g-~~~~~vafSP----DGk~l~~~~~d~~v~vwd~~t~~~~~~--------------~   99 (426)
T d1hzua2          41 AGQIALVDGDSK--KIVKVIDTG-YAVHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKV--------------A   99 (426)
T ss_dssp             TTEEEEEETTTC--SEEEEEECC-SSEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEE--------------E
T ss_pred             CCEEEEEECCCC--cEEEEEeCC-CCeeEEEECC----CCCEEEEEeCCCCEEEEEccCCceeEE--------------E
Confidence            799999999987  447777766 4689999999    999999999999999999998532111              1


Q ss_pred             ccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEeecCCCccCcceee-----------ecc---------Ccccc
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWRWKEFTESKVPIN-----------LQG---------NHVKP  140 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~-----------~~~---------~~~~~  140 (279)
                      .+....+|.+.+.++.|+|+++  ++ +++..++.+++||............           ..+         .....
T Consensus       100 ~i~~~~~~~~~~~s~~~spDG~--~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2         100 EIKIGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEECCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEeCCCCCcceEEeeeecCCCC--EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence            1223345777788889999998  55 6666899999999875422111100           000         00000


Q ss_pred             eEE---------eecCC-CCCccccCCCCCCceeEEEcCCCCeEEEec-CCCeEEEEecCCC------------------
Q 023643          141 VLD---------LVNHQ-HKGPWGALSPVPENNAIAVDPQGGAIFSAA-GDSCAYCWDVESS------------------  191 (279)
Q Consensus       141 ~~~---------~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~------------------  191 (279)
                      +..         ..... .............+..+.|+|++++++++. .+..+.+++..++                  
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence            000         00000 000011112334566788888888766653 3344555554432                  


Q ss_pred             ------------------------------------cEEEEeecCCcceEEEEEcCCCcEEEE-------ecCCCeEEEE
Q 023643          192 ------------------------------------RIKMVFKGHSDYLHCIVARNSTNQIVT-------GSEDGTARIW  228 (279)
Q Consensus       192 ------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~-------~~~d~~i~vw  228 (279)
                                                          +....+.+|...+..++|+|++++|++       ++.+++|+||
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vw  337 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  337 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEE
Confidence                                                344456677888899999999999994       5568899999


Q ss_pred             eCCCCceEEEecCCc-cccccCcceeeeEEEEcCCCCEEEE-E----cCcceEEeCC
Q 023643          229 DCKSGKCIKVIDPVK-DKQLKGVISCVSCITLDASESWLVR-V----RATNYVILFS  279 (279)
Q Consensus       229 d~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~----~~d~~i~~wd  279 (279)
                      |+.+++...++.+.. ...+..+...|..++|+|||++++. +    +.++.|++||
T Consensus       338 d~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         338 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             ETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             ECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            999998776653221 1122455667999999999997743 2    4688999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.4e-26  Score=172.72  Aligned_cols=191  Identities=13%  Similarity=0.135  Sum_probs=135.6

Q ss_pred             CCCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCccc---------------
Q 023643            1 MCGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKL---------------   65 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------   65 (279)
                      .||+|++||+.+.       ...|...|.++++++    + ..+++++.|++|++|++.......               
T Consensus        29 ~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~----~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~   96 (287)
T d1pgua2          29 YDGRIMEWSSSSM-------HQDHSNLIVSLDNSK----A-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV   96 (287)
T ss_dssp             TTSCEEETTTTEE-------ECCCCSCEEEEECCS----T-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred             CCCeEEEEECCCC-------CCCCCCCEEEEEecC----C-CeEEEEeeccccccccccccccccceeeeeeccCCceEE
Confidence            4899999997763       347889999999988    4 467899999999999876432110               


Q ss_pred             -------------------cccc-------CCcc-----------cceeee---cccccc-ccCCccCeEEEEecCCCCc
Q 023643           66 -------------------PLGL-------SNSK-----------VQQLLG---IEPDGF-LHGHDGPAYDVKFYGGNED  104 (279)
Q Consensus        66 -------------------~~~~-------~~~~-----------~~~~~~---~~~~~~-~~~h~~~v~~~~~~~~~~~  104 (279)
                                         .+..       .+..           ...++.   .+.... ...|..++.+++|+|++. 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  175 (287)
T d1pgua2          97 LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-  175 (287)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-
T ss_pred             EeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-
Confidence                               0000       0000           000000   111111 224778899999999998 


Q ss_pred             eEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC----------CCeE
Q 023643          105 ALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ----------GGAI  174 (279)
Q Consensus       105 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l  174 (279)
                       +|++++.||.|++||+.+...   .......|.                     ..|.+++|+|.          +.++
T Consensus       176 -~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~---------------------~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         176 -YIAAGDVMGKILLYDLQSREV---KTSRWAFRT---------------------SKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             -EEEEEETTSCEEEEETTTTEE---EECCSCCCS---------------------SCEEEEEECCCC------CCSCCEE
T ss_pred             -ccccccccccccceeeccccc---ccccccccc---------------------cccceeeecccccccccccCCCCee
Confidence             999999999999999864321   111111122                     23677777764          5689


Q ss_pred             EEecCCCeEEEEecCC-CcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          175 FSAAGDSCAYCWDVES-SRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       175 ~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      ++|+.|+.|++||+++ .+.+..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       231 ~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999999999977 56777788999999999999986 5889999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.4e-25  Score=174.36  Aligned_cols=188  Identities=13%  Similarity=0.066  Sum_probs=150.8

Q ss_pred             EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEE
Q 023643           30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLS  109 (279)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  109 (279)
                      .-.|||.   ||+++|+++ .|.|++||+..                   +..++ + +|...|.+++|+|+++  +|++
T Consensus         7 ~~~fSP~---dG~~~a~~~-~g~v~v~d~~~-------------------~~~~~-~-~~~~~v~~~~~spDg~--~l~~   59 (360)
T d1k32a3           7 AEDFSPL---DGDLIAFVS-RGQAFIQDVSG-------------------TYVLK-V-PEPLRIRYVRRGGDTK--VAFI   59 (360)
T ss_dssp             EEEEEEC---GGGCEEEEE-TTEEEEECTTS-------------------SBEEE-C-SCCSCEEEEEECSSSE--EEEE
T ss_pred             cccccCC---CCCEEEEEE-CCeEEEEECCC-------------------CcEEE-c-cCCCCEEEEEECCCCC--EEEE
Confidence            4568984   799999876 47999999986                   33332 2 5899999999999998  7777


Q ss_pred             eeCCC--cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEe
Q 023643          110 CGDDG--RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWD  187 (279)
Q Consensus       110 ~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  187 (279)
                      ++.+.  .|++||++...    ...+..+                      ...+.+++|+|++++|++++.++.+++|+
T Consensus        60 ~~~~~g~~v~v~d~~~~~----~~~~~~~----------------------~~~v~~~~~spdg~~l~~~~~~~~~~~~~  113 (360)
T d1k32a3          60 HGTREGDFLGIYDYRTGK----AEKFEEN----------------------LGNVFAMGVDRNGKFAVVANDRFEIMTVD  113 (360)
T ss_dssp             EEETTEEEEEEEETTTCC----EEECCCC----------------------CCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCc----EEEeeCC----------------------CceEEeeeecccccccceecccccccccc
Confidence            66553  79999986432    1111111                      12378999999999999999999999999


Q ss_pred             cCCCcEEEEeecCCcceEEEEEcCCCcEEEEe----------cCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          188 VESSRIKMVFKGHSDYLHCIVARNSTNQIVTG----------SEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~----------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                      +.+++....+..|...+.+++|+|+|++|+.+          ..++.+++||+.+++.....         .+...+..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---------~~~~~~~~~  184 (360)
T d1k32a3         114 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---------TENSHDYAP  184 (360)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS---------CSSSBEEEE
T ss_pred             ccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec---------ccccccccc
Confidence            99999999999999999999999999999854          35667999999988765543         455677889


Q ss_pred             EEcCCCCEEEEEcCcceEEeCC
Q 023643          258 TLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       258 ~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +|+|+|++|++++.++.+.+||
T Consensus       185 ~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         185 AFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             EECTTSCEEEEEESCCCCCEEC
T ss_pred             cccCCCCEEEEEeCCCceEccc
Confidence            9999999999999999988885

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1e-22  Score=154.17  Aligned_cols=240  Identities=12%  Similarity=0.056  Sum_probs=164.7

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      ||+|++||+++.+  .++++.. ......++|+|    ++++| ++++.++.|++||+.+                   .
T Consensus        11 ~~~v~v~D~~t~~--~~~~i~~-g~~p~~va~sp----dG~~l~v~~~~~~~i~v~d~~t-------------------~   64 (301)
T d1l0qa2          11 SDNISVIDVTSNK--VTATIPV-GSNPMGAVISP----DGTKVYVANAHSNDVSIIDTAT-------------------N   64 (301)
T ss_dssp             TTEEEEEETTTTE--EEEEEEC-SSSEEEEEECT----TSSEEEEEEGGGTEEEEEETTT-------------------T
T ss_pred             CCEEEEEECCCCe--EEEEEEC-CCCceEEEEeC----CCCEEEEEECCCCEEEEEECCC-------------------C
Confidence            7899999998874  4555553 35578999999    89877 5677899999999998                   5


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeecc-------CcccceE---------Ee
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQG-------NHVKPVL---------DL  144 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~---------~~  144 (279)
                      +.+..+..+.. +..+.|++++. ..++++..++.+.+|+...............       .....+.         ..
T Consensus        65 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          65 NVIATVPAGSS-PQGVAVSPDGK-QVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEEECSSS-EEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceeeeeecccc-ccccccccccc-cccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceee
Confidence            55666666654 67899999987 4556677788999999765422111110000       0000000         00


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC-CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEec---
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD-SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGS---  220 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---  220 (279)
                      .................+..+.++|++..++++..+ +.+.+|+....+....+.. ...+..++++++++.++.++   
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECS
T ss_pred             eeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccc
Confidence            011111111112233456889999999988777654 6778888887777776664 45578899999998876553   


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE-EEEcCcceEEeCC
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL-VRVRATNYVILFS  279 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd  279 (279)
                      .++.|++||+.+++.+..+..         ...+.+++|+|||++| ++++.|+.|++||
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~---------~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPV---------GPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEEC---------CSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeeeeeecCCCeEEEEEcC---------CCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            457899999999999888732         2357899999999976 5778899999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.1e-24  Score=162.18  Aligned_cols=224  Identities=13%  Similarity=0.107  Sum_probs=141.6

Q ss_pred             CCCceeeeccccccc-cceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCccc-----
Q 023643            1 MCGDSTNWDEDAYRK-SILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKV-----   74 (279)
Q Consensus         1 ~dG~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----   74 (279)
                      .||+|+|||++.... ..+.....|..+|.+++|+|.   ++.+|++|+.||.|++|++................     
T Consensus        31 ~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~---~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  107 (342)
T d1yfqa_          31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI  107 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred             CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC---CCCEEEEcccccceeeeecccccccccccccccccccccc
Confidence            489999999876432 223344469999999999983   46689999999999999998754433211111100     


Q ss_pred             ----------------ceeee---cc----ccccccC--CccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcc
Q 023643           75 ----------------QQLLG---IE----PDGFLHG--HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKV  129 (279)
Q Consensus        75 ----------------~~~~~---~~----~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  129 (279)
                                      ..++.   ..    .......  .......+.+.+.+.  .+++++.|+.|++|+++.......
T Consensus       108 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~  185 (342)
T d1yfqa_         108 CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS--RLIVGMNNSQVQWFRLPLCEDDNG  185 (342)
T ss_dssp             EEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS--EEEEEESTTEEEEEESSCCTTCCC
T ss_pred             cccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC--ceeeecCCCcEEEEecccCcccce
Confidence                            00000   00    0011111  122334556666776  899999999999999876433222


Q ss_pred             eeeeccCcc-----------------------cceEEeecCC-------------CCCccccCCCCCCceeEEEcCCCCe
Q 023643          130 PINLQGNHV-----------------------KPVLDLVNHQ-------------HKGPWGALSPVPENNAIAVDPQGGA  173 (279)
Q Consensus       130 ~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~  173 (279)
                      .........                       ..++.+....             .........+...+++++|+|++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  265 (342)
T d1yfqa_         186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF  265 (342)
T ss_dssp             EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred             eeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE
Confidence            111111000                       0011110000             0000111233456889999999999


Q ss_pred             EEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          174 IFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       174 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      |++|+.||.|++||+++++.+..+..+ ..+..++|+|+++++++++.|+.+++|..
T Consensus       266 lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         266 LYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             EEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            999999999999999999999888643 34556788889999999999998888864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2.6e-23  Score=159.82  Aligned_cols=212  Identities=9%  Similarity=0.059  Sum_probs=148.3

Q ss_pred             CCceeeeccccccccceeeeee--cccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceee
Q 023643            2 CGDSTNWDEDAYRKSILKEREI--LTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLL   78 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   78 (279)
                      |+.|++||+++.+  .+..+..  +...+.+++|+|    ||+++ ++++.++.|.+||+.++                 
T Consensus        10 d~~v~v~D~~s~~--~~~~i~~~~~~~~~~~i~~sp----Dg~~l~v~~~~~~~v~v~D~~t~-----------------   66 (337)
T d1pbyb_          10 PDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAP----GGRIAYATVNKSESLVKIDLVTG-----------------   66 (337)
T ss_dssp             TTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECT----TSSEEEEEETTTTEEEEEETTTC-----------------
T ss_pred             CCEEEEEECCCCe--EEEEEECCCCCCCccEEEECC----CCCEEEEEECCCCeEEEEECCCC-----------------
Confidence            7899999998874  3555544  345678999999    89887 56788999999999984                 


Q ss_pred             eccccccccCC-----ccCeEEEEecCCCCceEEEEeeC------------CCcEEEeecCCCccCcceeeeccCcccce
Q 023643           79 GIEPDGFLHGH-----DGPAYDVKFYGGNEDALLLSCGD------------DGRICGWRWKEFTESKVPINLQGNHVKPV  141 (279)
Q Consensus        79 ~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  141 (279)
                        +.+..+..+     ...+..++|+|+++  +++++..            +..+.+||..+..   ........     
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~-----  134 (337)
T d1pbyb_          67 --ETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEAP-----  134 (337)
T ss_dssp             --CEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEECC-----
T ss_pred             --cEEEEEecCCCcccccceeeEEEcCCCc--EEEEeecCCcceeeeccccccceeeccccCCe---EEEecccc-----
Confidence              333333332     23455789999998  7777764            4566666654321   11111110     


Q ss_pred             EEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe------------------------
Q 023643          142 LDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF------------------------  197 (279)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------------  197 (279)
                                        ..+..++|+|+++++++++.+  +.+||..+++....+                        
T Consensus       135 ------------------~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (337)
T d1pbyb_         135 ------------------RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             ------------------SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             ------------------CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccc
Confidence                              124677888888888877644  556776654433322                        


Q ss_pred             ------------------------------------------ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 023643          198 ------------------------------------------KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKC  235 (279)
Q Consensus       198 ------------------------------------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  235 (279)
                                                                ..+...+..++++|++.+++.+  ++.|++||+.+++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~  272 (337)
T d1pbyb_         195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS  272 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE
T ss_pred             cceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcE
Confidence                                                      2233345566777887777665  58999999999999


Q ss_pred             EEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          236 IKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      +..+.         +...+.+++|+|||++|++++.|+.|++||
T Consensus       273 ~~~~~---------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         273 IKRVP---------LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEE---------CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             EEEEc---------CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            98873         334678999999999999999999999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.1e-21  Score=155.98  Aligned_cols=241  Identities=10%  Similarity=-0.040  Sum_probs=162.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      ||.|+|||.++.+  ++..+..+ ..+..++|+|    ||+++++++.||+|++||+.+.+...              ..
T Consensus        41 ~g~v~v~D~~t~~--v~~~~~~g-~~~~~v~fSp----DG~~l~~~s~dg~v~~~d~~t~~~~~--------------~~   99 (432)
T d1qksa2          41 AGQIALIDGSTYE--IKTVLDTG-YAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTT--------------VA   99 (432)
T ss_dssp             TTEEEEEETTTCC--EEEEEECS-SCEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCE--------------EE
T ss_pred             CCEEEEEECCCCc--EEEEEeCC-CCeeEEEECC----CCCEEEEEcCCCCEEEEEeeCCCceE--------------EE
Confidence            7999999999884  47777766 4699999999    99999999999999999998743111              11


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+....+|.+.+.+..|+|+++ .++++++.+++|++||..+.+   ....+..+...           .......+...
T Consensus       100 ~i~~~~~~~~~~~s~~~SpDG~-~l~vs~~~~~~v~i~d~~t~~---~~~~~~~~~~~-----------~~~~~~~~~~~  164 (432)
T d1qksa2         100 EIKIGSEARSIETSKMEGWEDK-YAIAGAYWPPQYVIMDGETLE---PKKIQSTRGMT-----------YDEQEYHPEPR  164 (432)
T ss_dssp             EEECCSEEEEEEECCSTTCTTT-EEEEEEEETTEEEEEETTTCC---EEEEEECCEEC-----------TTTCCEESCCC
T ss_pred             EEecCCCCCCeEEecccCCCCC-EEEEEcCCCCeEEEEeCcccc---ceeeeccCCcc-----------ccceeccCCCc
Confidence            1223345677777888999998 235788899999999986542   22222211100           00011122234


Q ss_pred             ceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEee-cCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCCCCceEEE
Q 023643          162 NNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFK-GHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       162 i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~  238 (279)
                      ...+.++|++..+ ++...++.|.+||..+.+...... .+...+.+++|+|+|+++++++ .++.+.++|..+++....
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            5788999999865 556678999999998877554333 2456788999999999766655 566899999988777665


Q ss_pred             ecCCcc------------------------------------ccccCcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          239 IDPVKD------------------------------------KQLKGVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       239 ~~~~~~------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      +.....                                    ..+..|...+....++|++..+++++.+...++|
T Consensus       245 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw  320 (432)
T d1qksa2         245 EDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  320 (432)
T ss_dssp             EECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             eccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCcccee
Confidence            532210                                    0112233345566677776666666666666665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=5e-21  Score=152.14  Aligned_cols=188  Identities=14%  Similarity=0.060  Sum_probs=139.1

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeec
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRW  121 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~  121 (279)
                      -++++.+.+|+|.|||..+                   ++.+..+..+. .+..++|+|+++  ++++++.|+++++||+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t-------------------~~v~~~~~~g~-~~~~v~fSpDG~--~l~~~s~dg~v~~~d~   90 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST-------------------YEIKTVLDTGY-AVHISRLSASGR--YLFVIGRDGKVNMIDL   90 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT-------------------CCEEEEEECSS-CEEEEEECTTSC--EEEEEETTSEEEEEET
T ss_pred             EEEEEEcCCCEEEEEECCC-------------------CcEEEEEeCCC-CeeEEEECCCCC--EEEEEcCCCCEEEEEe
Confidence            3468899999999999998                   67777887664 589999999998  9999999999999998


Q ss_pred             CCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeE-EEecCCCeEEEEecCCCcEEEEeecC
Q 023643          122 KEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAI-FSAAGDSCAYCWDVESSRIKMVFKGH  200 (279)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~  200 (279)
                      .+...........+.....                    .+.+..|+|||++| +++..++.|++||..+++++..+..+
T Consensus        91 ~t~~~~~~~~i~~~~~~~~--------------------~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          91 WMKEPTTVAEIKIGSEARS--------------------IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             TSSSCCEEEEEECCSEEEE--------------------EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             eCCCceEEEEEecCCCCCC--------------------eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            7643222111111111111                    13556778899976 66778999999999999998877643


Q ss_pred             -----------CcceEEEEEcCCCcE-EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEE
Q 023643          201 -----------SDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVR  268 (279)
Q Consensus       201 -----------~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  268 (279)
                                 ......+.++|++.. +++...++.|.+||..+++......       ..+...+..++|+|+|+++++
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~-------i~~g~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-------ISAERFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-------EECCSSEEEEEECTTSCEEEE
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE-------EcccCccccceECCCCCEEEE
Confidence                       345667889998876 4677789999999998877654432       123345788999999998887


Q ss_pred             EcCcc-eEEeC
Q 023643          269 VRATN-YVILF  278 (279)
Q Consensus       269 ~~~d~-~i~~w  278 (279)
                      ++.++ .+.++
T Consensus       224 a~~~~~~v~v~  234 (432)
T d1qksa2         224 AANARNKLVVI  234 (432)
T ss_dssp             EEGGGTEEEEE
T ss_pred             eccccceEEEe
Confidence            76654 55544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=2.2e-20  Score=143.84  Aligned_cols=247  Identities=12%  Similarity=0.024  Sum_probs=152.2

Q ss_pred             CCceeeeccccccccceeeee-ecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |+.|.+||+++.+  .++++. .|...+.+++|+|    |++++ +++..++.|.+||+.+.+....+.           
T Consensus        17 ~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~sp----DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~-----------   79 (346)
T d1jmxb_          17 PNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAP----DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN-----------   79 (346)
T ss_dssp             TTEEEEEETTTTE--EEEEEECSSCCSSCEEEECT----TSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------
T ss_pred             CCEEEEEECCCCC--EEEEEEcCCCCCcceEEECC----CCCEEEEEECCCCcEEEEeCccCeeeeeec-----------
Confidence            7899999998874  466665 3456788999999    88876 566788999999999843221110           


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEee------------CCCcEEEeecCCCccCcceeeeccCcc---------
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG------------DDGRICGWRWKEFTESKVPINLQGNHV---------  138 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~---------  138 (279)
                        .......+...+..++|+|+++  ++++++            .++.+.+|+..+...............         
T Consensus        80 --~~~~~~~~~~~~~~v~~s~DG~--~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          80 --LSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             --SCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             --ccccccccCCceEEEEEecCCC--EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence              0001111223456789999998  666554            467888898765433221111100000         


Q ss_pred             cceEEe------ecCCCCCccccCCCCCCceeEEEcCCCC--------------------------eEEEecCCCeEEEE
Q 023643          139 KPVLDL------VNHQHKGPWGALSPVPENNAIAVDPQGG--------------------------AIFSAAGDSCAYCW  186 (279)
Q Consensus       139 ~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~l~~~~~d~~i~i~  186 (279)
                      ..++..      ....................+.++|++.                          .++++..+..+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            000000      0000000000000001112222333322                          23334445678889


Q ss_pred             ecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCE
Q 023643          187 DVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW  265 (279)
Q Consensus       187 d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  265 (279)
                      |+.++.... .+..+...+..+.+++++.+++... ++.|++||+.+++.+..+.         +...+.+++|+|||++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~---------~~~~~~~va~s~DG~~  305 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN---------LDHTYYCVAFDKKGDK  305 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE---------CSSCCCEEEECSSSSC
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc---------CCCCEEEEEEcCCCCE
Confidence            988876554 3456778889999999887777665 4679999999999988873         2236889999999999


Q ss_pred             EEEEcCcceEEeCC
Q 023643          266 LVRVRATNYVILFS  279 (279)
Q Consensus       266 l~~~~~d~~i~~wd  279 (279)
                      |++++.|+.|++||
T Consensus       306 l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         306 LYLGGTFNDLAVFN  319 (346)
T ss_dssp             EEEESBSSEEEEEE
T ss_pred             EEEEeCCCcEEEEE
Confidence            99999999999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.5e-19  Score=136.42  Aligned_cols=227  Identities=8%  Similarity=0.077  Sum_probs=134.8

Q ss_pred             CCceeeeccccccc-cceeeeeecccceEEEEECCCCCCCCCEEEE-ecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            2 CGDSTNWDEDAYRK-SILKEREILTRTVFRTVWGPSKDGSPDTIVI-ASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         2 dG~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |+.|++|+++.... ..++. ..|.+.+..|+|+|    ||++|++ +..|+.|++|++.......              
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~sp----DG~~L~v~~~~d~~i~~~~i~~~~~~~--------------   73 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGAL--------------   73 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCCE--------------
T ss_pred             CCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeC----CCCEEEEEECCCCeEEEEEEeCCCCcE--------------
Confidence            68999999875432 22333 35778999999999    8998854 5568999999998632110              


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSP  158 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (279)
                       +... ...+...+..++|+|+++  +|++++. ++.+.+|+............. .+.                     
T Consensus        74 -~~~~-~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~---------------------  127 (333)
T d1ri6a_          74 -TFAA-ESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGL---------------------  127 (333)
T ss_dssp             -EEEE-EEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEE-CCC---------------------
T ss_pred             -EEee-ecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceeccccc-CCC---------------------
Confidence             0111 112334567899999998  7777764 778999986532111111111 100                     


Q ss_pred             CCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEEe------ec--------------------------------
Q 023643          159 VPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMVF------KG--------------------------------  199 (279)
Q Consensus       159 ~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~------~~--------------------------------  199 (279)
                       ..+.++.++|+++++++++. +..|.+|+..........      ..                                
T Consensus       128 -~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         128 -DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             -TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             -ccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence             12467788888887766553 456777776543211100      00                                


Q ss_pred             ---------------------CCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEE
Q 023643          200 ---------------------HSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCI  257 (279)
Q Consensus       200 ---------------------~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  257 (279)
                                           .......++++++++++ +++..++.+.+|++........+...     ......+..+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~  281 (333)
T d1ri6a_         207 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-----QPTETQPRGF  281 (333)
T ss_dssp             SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-----EECSSSCCCE
T ss_pred             cccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE-----eCCCCCeeEE
Confidence                                 01123445666666543 34455666777766544332222110     1222346789


Q ss_pred             EEcCCCCEEEEEc-CcceEEeCC
Q 023643          258 TLDASESWLVRVR-ATNYVILFS  279 (279)
Q Consensus       258 ~~~~~~~~l~~~~-~d~~i~~wd  279 (279)
                      +|+|||++|++++ .++.|.+|+
T Consensus       282 a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         282 NVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEE
Confidence            9999999987765 468899883

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=2.5e-19  Score=142.22  Aligned_cols=187  Identities=13%  Similarity=0.046  Sum_probs=124.1

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeec
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRW  121 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~  121 (279)
                      .++++.+.||+|+|||+.+                   ++.+..+..|. .+..++|+|+|+  +|++++.|++|++||+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t-------------------~~~~~~l~~g~-~~~~vafSPDGk--~l~~~~~d~~v~vwd~   90 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS-------------------KKIVKVIDTGY-AVHISRMSASGR--YLLVIGRDARIDMIDL   90 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT-------------------CSEEEEEECCS-SEEEEEECTTSC--EEEEEETTSEEEEEET
T ss_pred             EEEEEEcCCCEEEEEECCC-------------------CcEEEEEeCCC-CeeEEEECCCCC--EEEEEeCCCCEEEEEc
Confidence            3567788999999999998                   67777887764 589999999998  9999999999999998


Q ss_pred             CCCccCcceeeec-cCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeEEEEecCCCcEEEEeec
Q 023643          122 KEFTESKVPINLQ-GNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKG  199 (279)
Q Consensus       122 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~  199 (279)
                      .+.+... ...+. +.....                    .+.+++|+|||++++++ ..++.+++||..+++++..+..
T Consensus        91 ~t~~~~~-~~~i~~~~~~~~--------------------~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~  149 (426)
T d1hzua2          91 WAKEPTK-VAEIKIGIEARS--------------------VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  149 (426)
T ss_dssp             TSSSCEE-EEEEECCSEEEE--------------------EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             cCCceeE-EEEEeCCCCCcc--------------------eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec
Confidence            7643221 11111 111000                    14567788999987554 5789999999999999888776


Q ss_pred             CCcceEEEEEcCCCc-EEEEecCC-----------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEE
Q 023643          200 HSDYLHCIVARNSTN-QIVTGSED-----------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLV  267 (279)
Q Consensus       200 ~~~~i~~i~~~~~~~-~l~~~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  267 (279)
                      |...+..+.+.+++. ..+..+.|           +.+.+++......+...       ...+...+..++|+|++++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~  222 (426)
T d1hzua2         150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-------SIGAAPFLADGGWDSSHRYFM  222 (426)
T ss_dssp             CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE-------EEECCSSEEEEEECTTSCEEE
T ss_pred             cCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE-------EeccCCccEeeeECCCCcEEE
Confidence            655444444444332 22333333           34444444333322111       124556788999999999888


Q ss_pred             EEcC-cceEEeC
Q 023643          268 RVRA-TNYVILF  278 (279)
Q Consensus       268 ~~~~-d~~i~~w  278 (279)
                      ++.. +..+.++
T Consensus       223 ~a~~~~~~~~~~  234 (426)
T d1hzua2         223 TAANNSNKVAVI  234 (426)
T ss_dssp             EEETTCSEEEEE
T ss_pred             eeeecccceeee
Confidence            7754 4445444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=1e-17  Score=126.27  Aligned_cols=210  Identities=10%  Similarity=0.041  Sum_probs=141.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCE-EEEecCCCcEEEEeCCCCCcccccccCCcccceeeec
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDT-IVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      +|.|++||+++.+  .+..+..+. .+..++|++    ++.. ++++..++.+.+|+..+                   .
T Consensus        53 ~~~i~v~d~~t~~--~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------------------~  106 (301)
T d1l0qa2          53 SNDVSIIDTATNN--VIATVPAGS-SPQGVAVSP----DGKQVYVTNMASSTLSVIDTTS-------------------N  106 (301)
T ss_dssp             GTEEEEEETTTTE--EEEEEECSS-SEEEEEECT----TSSEEEEEETTTTEEEEEETTT-------------------T
T ss_pred             CCEEEEEECCCCc--eeeeeeccc-ccccccccc----ccccccccccccceeeeccccc-------------------c
Confidence            6789999998764  355666554 468899999    6765 45567788999999987                   4


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeec-------cCcccceEEe---------
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQ-------GNHVKPVLDL---------  144 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------~~~~~~~~~~---------  144 (279)
                      +....+..+ ....++.|+|++. ..++++..++.+.+|+..+...........       ......++..         
T Consensus       107 ~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
T d1l0qa2         107 TVAGTVKTG-KSPLGLALSPDGK-KLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV  184 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeecccc-ccceEEEeecCCC-eeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccc
Confidence            444555433 4578899999998 345677778899999976542211110000       0000001100         


Q ss_pred             ecCCCCCccccCCCCCCceeEEEcCCCCeEEEec---CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEec
Q 023643          145 VNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA---GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGS  220 (279)
Q Consensus       145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~  220 (279)
                      .................+..+++++++..++++.   .++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             EETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET
T ss_pred             ccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEEC
Confidence            0000011111111223467889999999877654   3468999999999998888754 457999999999876 6788


Q ss_pred             CCCeEEEEeCCCCceEEEec
Q 023643          221 EDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~  240 (279)
                      .|+.|++||+.+++.+.++.
T Consensus       264 ~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         264 FCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEEe
Confidence            89999999999999998884

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.3e-17  Score=126.16  Aligned_cols=155  Identities=9%  Similarity=0.064  Sum_probs=115.4

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccC--CccCeEEEEecCCCCceEE-EEeeCCCcEEE
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHG--HDGPAYDVKFYGGNEDALL-LSCGDDGRICG  118 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~i  118 (279)
                      +++++++.|++|+|||+.+                   .+.+..+..  +...+.+++|+|+++  ++ ++++.++.|.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-------------------~~~~~~i~~~~~~~~~~~i~~spDg~--~l~v~~~~~~~v~v   60 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-------------------MAVDKVITIADAGPTPMVPMVAPGGR--IAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-------------------TEEEEEEECTTCTTCCCCEEECTTSS--EEEEEETTTTEEEE
T ss_pred             eEEEEEcCCCEEEEEECCC-------------------CeEEEEEECCCCCCCccEEEECCCCC--EEEEEECCCCeEEE
Confidence            5899999999999999998                   455555543  345578999999998  65 67788999999


Q ss_pred             eecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec------------CCCeEEEE
Q 023643          119 WRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA------------GDSCAYCW  186 (279)
Q Consensus       119 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------~d~~i~i~  186 (279)
                      ||+++.+   .............                 ...+..++|+|++++++++.            .+..+.+|
T Consensus        61 ~D~~t~~---~~~~~~~~~~~~~-----------------~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T d1pbyb_          61 IDLVTGE---TLGRIDLSTPEER-----------------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             EETTTCC---EEEEEECCBTTEE-----------------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             EECCCCc---EEEEEecCCCccc-----------------ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence            9987542   2222221110000                 00246889999999988775            36789999


Q ss_pred             ecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          187 DVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       187 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      |..+++.+..+.. ...+..++|+|+|+++++++.+  +.+||..+++....+.
T Consensus       121 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_         121 DAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             ETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred             cccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence            9999999888874 4567889999999999998754  6789998888777664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=2.3e-16  Score=122.62  Aligned_cols=240  Identities=10%  Similarity=-0.024  Sum_probs=130.6

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      +.|.+||.++.+  .+..+..+..  ..++|+|    ||++|++++          .++.|.+||..+.           
T Consensus        47 ~~v~v~D~~tg~--~~~~~~~~~~--~~~a~Sp----DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~-----------  107 (373)
T d2madh_          47 IQQWVLDAGSGS--ILGHVNGGFL--PNPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-----------  107 (373)
T ss_pred             ceEEEEECCCCC--EEEEEeCCCC--ccEEEcC----CCCEEEEEeecCCcccccccceEEEEEECCCC-----------
Confidence            467788877764  4555655443  3799999    999998874          4578999999984           


Q ss_pred             ccceeeeccccccccCCccC-------eEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceee-----eccCcccc
Q 023643           73 KVQQLLGIEPDGFLHGHDGP-------AYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPIN-----LQGNHVKP  140 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~  140 (279)
                              +.+..+..+...       ...+.|+++++..++.....++.+.+|+............     +.......
T Consensus       108 --------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  179 (373)
T d2madh_         108 --------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPST  179 (373)
T ss_pred             --------cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcE
Confidence                    333333333322       2456788887722233334566788888654211100000     00000000


Q ss_pred             eEEeecCCCCCccccC-----------C-CC---CCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE--eecC---
Q 023643          141 VLDLVNHQHKGPWGAL-----------S-PV---PENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV--FKGH---  200 (279)
Q Consensus       141 ~~~~~~~~~~~~~~~~-----------~-~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~---  200 (279)
                      +...........+...           . ..   .....+.+.+++. ++..+.++.+.+|+.........  ...+   
T Consensus       180 ~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  258 (373)
T d2madh_         180 FYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCc
Confidence            0000000000000000           0 00   0112233344333 33445567777777665543221  1111   


Q ss_pred             -------CcceEEEEEcCCCcE----------EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCC
Q 023643          201 -------SDYLHCIVARNSTNQ----------IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASE  263 (279)
Q Consensus       201 -------~~~i~~i~~~~~~~~----------l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  263 (279)
                             ......+++++++..          +++...++.+.+||..+++.+..+.         +...+..++|+|||
T Consensus       259 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---------~~~~~~~~a~spDG  329 (373)
T d2madh_         259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---------LGHDVDAISVAQDG  329 (373)
T ss_pred             EEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec---------CCCCeeEEEECCCC
Confidence                   112233455555443          3455667789999999999988873         34567899999999


Q ss_pred             CE--EEEEcCcceEEeCC
Q 023643          264 SW--LVRVRATNYVILFS  279 (279)
Q Consensus       264 ~~--l~~~~~d~~i~~wd  279 (279)
                      +.  +++++.|+.|++||
T Consensus       330 ~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         330 GPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             CEEEEEEeCCCCeEEEEE
Confidence            84  46889999999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2.4e-17  Score=127.24  Aligned_cols=247  Identities=9%  Similarity=-0.022  Sum_probs=149.4

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEe----------cCCCcEEEEeCCCCCcccccccCC
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIA----------SSDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      ++.|.+||.++.+  .+..+..+.  ...++|+|    |+++|++.          ..|+.|++||..+......+....
T Consensus        27 ~~~v~v~D~~tg~--~~~~~~~g~--~~~~a~Sp----Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          27 VTQQFVIDGEAGR--VIGMIDGGF--LPNPVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             SEEEEEEETTTTE--EEEEEEECS--SCEEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCeEEEEECCCCc--EEEEEECCC--CCceEEcC----CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            4568899988774  355555443  44799999    89988764          347899999999853222111000


Q ss_pred             cccceeeeccccccccCCccCeEEEEecCCCCceEEEEe--eCCCcEEEeecCCCccCcceeeec-------c-------
Q 023643           72 SKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC--GDDGRICGWRWKEFTESKVPINLQ-------G-------  135 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~-------~-------  135 (279)
                                  ............+.|+|++.  +++.+  +.+..+.+|+..............       +       
T Consensus        99 ------------~~~~~~~~~~~~~~~s~dg~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          99 ------------APRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             ------------CCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             ------------cceeecCCCCceEEEecCCC--eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence                        00001112234678999998  55554  456789999986543211111000       0       


Q ss_pred             --CcccceEEeecCCCCCcc----ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEE--EeecCC------
Q 023643          136 --NHVKPVLDLVNHQHKGPW----GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKM--VFKGHS------  201 (279)
Q Consensus       136 --~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~------  201 (279)
                        ..................    ........+....+.+++..++.++.++.+++|++..++...  ....+.      
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD  244 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEee
Confidence              000000000000000000    001122235566788888888999999999999998775432  121111      


Q ss_pred             ----cceEEEEEcCCCcEEEEecCC----------CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC--E
Q 023643          202 ----DYLHCIVARNSTNQIVTGSED----------GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES--W  265 (279)
Q Consensus       202 ----~~i~~i~~~~~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~  265 (279)
                          .....+++++++..++..+.+          ..|.+||..+++.+..+.         +...+.+++|+|||+  +
T Consensus       245 ~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~---------~~~~~~~~a~spDG~~~l  315 (355)
T d2bbkh_         245 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------MGHEIDSINVSQDEKPLL  315 (355)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---------EEEEECEEEECCSSSCEE
T ss_pred             eeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec---------CCCCEEEEEEcCCCCeEE
Confidence                223457889998887765433          469999999999988873         335688999999997  4


Q ss_pred             EEEEcCcceEEeCC
Q 023643          266 LVRVRATNYVILFS  279 (279)
Q Consensus       266 l~~~~~d~~i~~wd  279 (279)
                      +++++.|+.|++||
T Consensus       316 ~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         316 YALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECCCCEEEEEE
Confidence            56778899999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.5e-15  Score=115.80  Aligned_cols=217  Identities=11%  Similarity=0.026  Sum_probs=132.3

Q ss_pred             CCceeeeccccccccceeeeeecc-------cceEEEEECCCCCCCCCEEEEec--CCCcEEEEeCCCCCcccccccC--
Q 023643            2 CGDSTNWDEDAYRKSILKEREILT-------RTVFRTVWGPSKDGSPDTIVIAS--SDGSITSYSIPSCISKLPLGLS--   70 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~--   70 (279)
                      ||.|++||..+.+.  +.....+.       .....++|+|    ++.+++++.  .+..+.+|+..+......+...  
T Consensus        77 d~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_          77 TDYVEVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTP----DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             EEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECT----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             CCEEEEEECCCCCE--EEEEecCCcceeecCCCCceEEEec----CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence            57899999887643  33332221       2235678999    888877764  5678999999876543322111  


Q ss_pred             ---------------Ccccceeee---------ccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCcc
Q 023643           71 ---------------NSKVQQLLG---------IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTE  126 (279)
Q Consensus        71 ---------------~~~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  126 (279)
                                     .......+.         .........+...+....+.+++.  .++.++.++.+++|++.....
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSC
T ss_pred             ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCC--eEEEecCCCeEEEEecCCCcE
Confidence                           110000000         000001112333344556677666  788888899999999764321


Q ss_pred             CcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC----------CeEEEEecCCCcEEEE
Q 023643          127 SKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD----------SCAYCWDVESSRIKMV  196 (279)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~  196 (279)
                       ............... .           .........+++++++..++....+          ..|.+||..+++.+..
T Consensus       229 -~~~~~~~~~~~~~~~-~-----------~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~  295 (355)
T d2bbkh_         229 -KFLPAVEALTEAERA-D-----------GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  295 (355)
T ss_dssp             -EECCCEESSCHHHHH-T-----------TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             -EEEeccCCcccceEe-e-----------eeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE
Confidence             111111111000000 0           0000113567899999987765432          4799999999999888


Q ss_pred             eecCCcceEEEEEcCCCc--EEEEecCCCeEEEEeCCCCceEEEec
Q 023643          197 FKGHSDYLHCIVARNSTN--QIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       197 ~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      +. +...+.+++|+|+|+  ++++++.|+.|++||+++++.+.++.
T Consensus       296 ~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         296 FE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            86 445688999999987  46778889999999999999999984

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=2.8e-14  Score=110.65  Aligned_cols=221  Identities=7%  Similarity=-0.033  Sum_probs=134.7

Q ss_pred             CCceeeeccccccccceeeeeecccce-------EEEEECCCCCCCCCEEEEe--cCCCcEEEEeCCCCCcccccccCCc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTV-------FRTVWGPSKDGSPDTIVIA--SSDGSITSYSIPSCISKLPLGLSNS   72 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~   72 (279)
                      +|.|++||..+.+.  +.....+....       ..+.|+|    +++.++..  ..++.+.+|+....           
T Consensus        96 ~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~~v~~~~~~~~~~~~~~~~~-----------  158 (373)
T d2madh_          96 TDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTP----NNADLLFFQFAAGPAVGLVVQGGS-----------  158 (373)
T ss_pred             ceEEEEEECCCCcE--EEEEecCCcceeEeccCCCcEEEEe----CCCcEEEEEEcCCCceEEeeccCC-----------
Confidence            57899999888743  44444444333       3467777    66655444  34567778887752           


Q ss_pred             ccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeee---------------ccC-
Q 023643           73 KVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINL---------------QGN-  136 (279)
Q Consensus        73 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---------------~~~-  136 (279)
                              +    ...+.....++.++|+++ ..+++.+.|+.+.+|+.............               .+. 
T Consensus       159 --------~----~~~~~~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T d2madh_         159 --------S----DDQLLSSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             --------e----EEEEeccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence                    1    122334467888999987 46788999999999997653221111100               000 


Q ss_pred             ------cccceEEeecCCCC----Ccccc--------CCCCCCceeEEEcCCCCeE----------EEecCCCeEEEEec
Q 023643          137 ------HVKPVLDLVNHQHK----GPWGA--------LSPVPENNAIAVDPQGGAI----------FSAAGDSCAYCWDV  188 (279)
Q Consensus       137 ------~~~~~~~~~~~~~~----~~~~~--------~~~~~~i~~~~~~~~~~~l----------~~~~~d~~i~i~d~  188 (279)
                            ....+..+......    ..+..        .........+++++++..+          ++...++.+.+||.
T Consensus       226 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence                  00000000000000    00000        0001112344555555544          34556778999999


Q ss_pred             CCCcEEEEeecCCcceEEEEEcCCCcE--EEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          189 ESSRIKMVFKGHSDYLHCIVARNSTNQ--IVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      .+++.+..+. +...+.+++|+|||+.  +++++.|+.|++||+.+++.+..+        ..+....+.+++.+
T Consensus       306 ~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~--------~~~g~~P~~l~~~~  371 (373)
T d2madh_         306 LVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST--------VELGSGPQVLSVMN  371 (373)
T ss_pred             CCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE--------CCCCCCCcEEEEec
Confidence            9999998876 6677899999999984  578899999999999999999999        44545556666544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.1e-15  Score=114.13  Aligned_cols=193  Identities=10%  Similarity=0.031  Sum_probs=125.6

Q ss_pred             CEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEE-EEeeCCCcEEEee
Q 023643           42 DTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALL-LSCGDDGRICGWR  120 (279)
Q Consensus        42 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iw~  120 (279)
                      ..+++++.|++|++|+++....                .+.+.. ..|.+.+..|+|+|+++  +| +++..|+.|++|+
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~----------------l~~~~~-~~~~~~v~~la~spDG~--~L~v~~~~d~~i~~~~   65 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGA----------------LTLTQV-VDVPGQVQPMVVSPDKR--YLYVGVRPEFRVLAYR   65 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSC----------------EEEEEE-EECSSCCCCEEECTTSS--EEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCC----------------eEEEEE-EcCCCCEeEEEEeCCCC--EEEEEECCCCeEEEEE
Confidence            3457888999999999986311                111222 24778899999999998  77 4555689999999


Q ss_pred             cCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCCCcEEEE--e
Q 023643          121 WKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVESSRIKMV--F  197 (279)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~--~  197 (279)
                      +................                      ..+..++|+|++++|++++. ++.|.+|+.........  .
T Consensus        66 i~~~~~~~~~~~~~~~~----------------------~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~  123 (333)
T d1ri6a_          66 IAPDDGALTFAAESALP----------------------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV  123 (333)
T ss_dssp             ECTTTCCEEEEEEEECS----------------------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred             EeCCCCcEEEeeecccC----------------------CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccc
Confidence            86532221111111000                      02468999999999888864 67899999877655443  3


Q ss_pred             ecCCcceEEEEEcCCCcEEEEec-CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc-CcceE
Q 023643          198 KGHSDYLHCIVARNSTNQIVTGS-EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR-ATNYV  275 (279)
Q Consensus       198 ~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i  275 (279)
                      ..+...+.++.++|++++++.++ .+..|.+|+...............  ..........++|++++.+++... ..+..
T Consensus       124 ~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~  201 (333)
T d1ri6a_         124 VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV--TTVEGAGPRHMVFHPNEQYAYCVNELNSSV  201 (333)
T ss_dssp             ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--ECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee--eeecCCCccEEEEeccceeEEeeccccCce
Confidence            34667788999999999877666 456799999876543332211000  012234457899999988876554 33443


Q ss_pred             Ee
Q 023643          276 IL  277 (279)
Q Consensus       276 ~~  277 (279)
                      .+
T Consensus       202 ~v  203 (333)
T d1ri6a_         202 DV  203 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=2.5e-16  Score=120.76  Aligned_cols=164  Identities=10%  Similarity=0.059  Sum_probs=115.8

Q ss_pred             EEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCCCceEEEE
Q 023643           31 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDALLLS  109 (279)
Q Consensus        31 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s  109 (279)
                      ++|++    ++++|++++.+++|.+||+.+                   .+.+.+++ .|...+.+++|+|+++ .++++
T Consensus         2 ~a~~~----~~~~l~~~~~~~~v~v~D~~t-------------------~~~~~t~~~~~~~~p~~l~~spDG~-~l~v~   57 (346)
T d1jmxb_           2 PALKA----GHEYMIVTNYPNNLHVVDVAS-------------------DTVYKSCVMPDKFGPGTAMMAPDNR-TAYVL   57 (346)
T ss_dssp             CCCCT----TCEEEEEEETTTEEEEEETTT-------------------TEEEEEEECSSCCSSCEEEECTTSS-EEEEE
T ss_pred             ccCCC----CCcEEEEEcCCCEEEEEECCC-------------------CCEEEEEEcCCCCCcceEEECCCCC-EEEEE
Confidence            45777    899999999999999999998                   56666665 3556688999999998 23466


Q ss_pred             eeCCCcEEEeecCCCccCcceeeeccCc-ccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec----------
Q 023643          110 CGDDGRICGWRWKEFTESKVPINLQGNH-VKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA----------  178 (279)
Q Consensus       110 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------  178 (279)
                      ++.++.|++||+.+...   ........ .....                 ..+..++|+|+|++++++.          
T Consensus        58 ~~~~~~v~~~d~~t~~~---~~~~~~~~~~~~~~-----------------~~~~~v~~s~DG~~l~v~~~~~~~~~~~~  117 (346)
T d1jmxb_          58 NNHYGDIYGIDLDTCKN---TFHANLSSVPGEVG-----------------RSMYSFAISPDGKEVYATVNPTQRLNDHY  117 (346)
T ss_dssp             ETTTTEEEEEETTTTEE---EEEEESCCSTTEEE-----------------ECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             ECCCCcEEEEeCccCee---eeeecccccccccC-----------------CceEEEEEecCCCEEEEEecCCcceeeee
Confidence            77899999999875422   11111110 00000                 0146889999999888765          


Q ss_pred             --CCCeEEEEecCCCcEEEEeecC--CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecC
Q 023643          179 --GDSCAYCWDVESSRIKMVFKGH--SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDP  241 (279)
Q Consensus       179 --~d~~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  241 (279)
                        .+..+.+||..+++....+..+  ...+..+.+++++..++++   +.+.+|++.+++.+..+..
T Consensus       118 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  181 (346)
T d1jmxb_         118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPL  181 (346)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECS
T ss_pred             ccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEec
Confidence              4678999999887665544332  2345666777777766653   4589999999998888753

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.2e-13  Score=107.06  Aligned_cols=235  Identities=11%  Similarity=0.002  Sum_probs=135.4

Q ss_pred             eeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEec----------CCCcEEEEeCCCCCcccccccCCccc
Q 023643            5 STNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIAS----------SDGSITSYSIPSCISKLPLGLSNSKV   74 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~   74 (279)
                      |.+||.++.  +.+.....+..+  .++|+|    |++.|++.+          .|+.|++||..+..            
T Consensus        48 ~~~~d~~~~--~~~~~~~~~~~~--~~a~sp----Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~------------  107 (368)
T d1mdah_          48 NWVSCAGCG--VTLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFL------------  107 (368)
T ss_dssp             EEEEETTTT--EEEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC------------
T ss_pred             EEEEeCCCC--cEEEEEeCCCCC--cceECC----CCCEEEEEcccCccccccccCCeEEEEECCCCc------------
Confidence            445566655  345555555444  589999    899888754          47789999999843            


Q ss_pred             ceeeeccccccccCC-------ccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeecc-----------
Q 023643           75 QQLLGIEPDGFLHGH-------DGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQG-----------  135 (279)
Q Consensus        75 ~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~-----------  135 (279)
                             ++..+..+       ......++|+|+++  +|+++. .++.+.+||+...+..........           
T Consensus       108 -------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk--~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (368)
T d1mdah_         108 -------PIADIELPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATH  178 (368)
T ss_dssp             -------EEEEEEETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEE
T ss_pred             -------EeeeecCCccceecccCCccceEECCCCC--EEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceE
Confidence                   22222211       11233689999998  666554 679999999876432111110000           


Q ss_pred             -----CcccceEEeecCCCCCcc----ccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee--cC----
Q 023643          136 -----NHVKPVLDLVNHQHKGPW----GALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK--GH----  200 (279)
Q Consensus       136 -----~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~----  200 (279)
                           ........+.........    ........+....+.+++..+++.  .+.+++++...+.......  .+    
T Consensus       179 v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             EEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccccccee
Confidence                 000001111111000000    001112234566777776655544  4556677766554433211  11    


Q ss_pred             ------CcceEEEEEcCCCcEEEEecC---------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC-
Q 023643          201 ------SDYLHCIVARNSTNQIVTGSE---------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-  264 (279)
Q Consensus       201 ------~~~i~~i~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  264 (279)
                            ......++++|++..++....         ...|.+||..+++.+..+.         +...+.+++|+|||+ 
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---------~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------NGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------EEEEECEEEECCSSSC
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---------CCCceeEEEECCCCCE
Confidence                  112235788888777655432         2359999999999888762         345788999999997 


Q ss_pred             -EEEEEcCcceEEeCC
Q 023643          265 -WLVRVRATNYVILFS  279 (279)
Q Consensus       265 -~l~~~~~d~~i~~wd  279 (279)
                       .++++..|+.|++||
T Consensus       328 ~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         328 DNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCeEEEEE
Confidence             346778899999997

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=2.2e-13  Score=105.45  Aligned_cols=78  Identities=9%  Similarity=0.045  Sum_probs=63.2

Q ss_pred             eeEEEcCCCCeEEEecC---------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc--EEEEecCCCeEEEEeCC
Q 023643          163 NAIAVDPQGGAIFSAAG---------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN--QIVTGSEDGTARIWDCK  231 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~vwd~~  231 (279)
                      ..++++|++..+++...         ...|.+||..+++.+..+. +...+..++|+|||+  .++++..++.|++||..
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            46788998887766532         2469999999999888876 446788999999986  35677889999999999


Q ss_pred             CCceEEEecC
Q 023643          232 SGKCIKVIDP  241 (279)
Q Consensus       232 ~~~~~~~~~~  241 (279)
                      +++.+..++.
T Consensus       346 tgk~~~~i~~  355 (368)
T d1mdah_         346 SDQDQSSVEL  355 (368)
T ss_dssp             SCEEEEECCC
T ss_pred             CCCEEEEEEC
Confidence            9999999853

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.36  E-value=5.7e-12  Score=97.87  Aligned_cols=213  Identities=7%  Similarity=-0.021  Sum_probs=118.3

Q ss_pred             eEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeeecccccccc-CCccCeEEEEecCCCCce
Q 023643           28 VFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLH-GHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        28 v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~  105 (279)
                      .....++|    ||++|++. ..+++|.++|+.+.                   +....+. .+...+..++|+|+++..
T Consensus        74 ~s~t~gtp----DGr~lfV~d~~~~rVavIDl~t~-------------------k~~~ii~iP~g~gphgi~~spdg~t~  130 (441)
T d1qnia2          74 ISMTDGRY----DGKYLFINDKANTRVARIRLDIM-------------------KTDKITHIPNVQAIHGLRLQKVPKTN  130 (441)
T ss_dssp             EEEETTEE----EEEEEEEEETTTTEEEEEETTTT-------------------EEEEEEECTTCCCEEEEEECCSSBCC
T ss_pred             cceecccC----CCCEEEEEcCCCCEEEEEECCCC-------------------cEeeEEecCCCCCccceEEeccCCEE
Confidence            44445567    89888554 57889999999984                   3333332 356678999999988733


Q ss_pred             EEEEeeCCCcEEE-eecCC---CccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC--
Q 023643          106 LLLSCGDDGRICG-WRWKE---FTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG--  179 (279)
Q Consensus       106 ~l~s~~~dg~i~i-w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  179 (279)
                      +++..+. ..+.+ .+-..   ..................+.+....            ....++++|+|+++++.+.  
T Consensus       131 YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~------------~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         131 YVFCNAE-FVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG------------NLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEEEC-SCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS------------CCCCEEECSSSSEEEEEESCT
T ss_pred             EEEeccC-CcccccCcccccccccccceEEeecCccceeeEEEecCC------------CccceEECCCCCEEEEEecCC
Confidence            4444443 33322 10000   0000000001111111111111000            1356667777776665542  


Q ss_pred             ---------------------------------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEe
Q 023643          180 ---------------------------------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTG  219 (279)
Q Consensus       180 ---------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~  219 (279)
                                                             ++.+.+++....+.+..+..... ...+.++|||+++ +++
T Consensus       198 e~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~  276 (441)
T d1qnia2         198 ERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANG  276 (441)
T ss_dssp             TCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEEC
T ss_pred             CceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeC
Confidence                                                   34555555555566666665444 5789999999986 567


Q ss_pred             cCCCeEEEEeCCCCceEEEecCCc--cccccC---cceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          220 SEDGTARIWDCKSGKCIKVIDPVK--DKQLKG---VISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       220 ~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ..+++|.|||+.+.+..  +....  ...+.+   ..-.....+|+++|..+.+..-|..|..|+
T Consensus       277 ~~~~tvsv~d~~k~~~~--~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         277 KLSPTVSVIAIDKLDDL--FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             TTSSBEEEEEGGGHHHH--TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             CcCCcEEEEEeehhhhH--hhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEec
Confidence            88999999998653211  10000  000001   111234468999999888999999999885

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=1e-10  Score=93.25  Aligned_cols=94  Identities=9%  Similarity=-0.069  Sum_probs=64.1

Q ss_pred             CCceeeeccccccccce---eeeeecccceEEEEECCCCCCCCCEEEEec---------CCCcEEEEeCCCCCccccccc
Q 023643            2 CGDSTNWDEDAYRKSIL---KEREILTRTVFRTVWGPSKDGSPDTIVIAS---------SDGSITSYSIPSCISKLPLGL   69 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~   69 (279)
                      ||.+.+||++++....+   ..+..|...|.++.|||    |+++|+.++         .++.+.+||+.++.       
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp----Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-------  103 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-------  103 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-------
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC----CCCEEEEEECCcceeeeccCceEEEEECCCCc-------
Confidence            67899999888764332   14455667899999999    999999874         35778999999742       


Q ss_pred             CCcccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecC
Q 023643           70 SNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWK  122 (279)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  122 (279)
                                   ...+..|.+.+..+.|+|+|+  .++... ++.+.+|+..
T Consensus       104 -------------~~~l~~~~~~~~~~~~SPDG~--~ia~~~-~~~l~~~~~~  140 (470)
T d2bgra1         104 -------------LITEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEP  140 (470)
T ss_dssp             -------------ECCSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESST
T ss_pred             -------------ccccccCCccccccccccCcc--eeeEee-cccceEEECC
Confidence                         233445556666666666666  555533 4556666554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=8.7e-11  Score=91.18  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=77.4

Q ss_pred             ceeEEEcCCCCeEEE-ecCCCeEEEEecCCCcEE--------EEeecC---CcceEEEEEcCCCcEEEEecCCCeEEEEe
Q 023643          162 NNAIAVDPQGGAIFS-AAGDSCAYCWDVESSRIK--------MVFKGH---SDYLHCIVARNSTNQIVTGSEDGTARIWD  229 (279)
Q Consensus       162 i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~--------~~~~~~---~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  229 (279)
                      ...+.++|||+++++ +..+++|.+||+.+.+..        ..+.++   .-.....+|+++|+.+.+...|..|..|+
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEec
Confidence            468999999997754 677999999998752210        111111   11245568999999999999999999999


Q ss_pred             CCC----------CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE---cCcc
Q 023643          230 CKS----------GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV---RATN  273 (279)
Q Consensus       230 ~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~  273 (279)
                      +..          ...+..+..+-+   .+|...+.+.+++|||+||+++   |.|.
T Consensus       340 ~~~~~~~~~~~~~~~v~~~~~v~y~---~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         340 IADAIKHYNGDRVNYIRQKLDVQYQ---PGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             cchhhhhhccCCCceeEeccccccC---CCCCccccccccCCCCcEEEecCcccccc
Confidence            741          123334433321   5888889999999999999999   5554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=6e-12  Score=100.51  Aligned_cols=154  Identities=11%  Similarity=0.120  Sum_probs=106.6

Q ss_pred             EEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCe
Q 023643           94 YDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGA  173 (279)
Q Consensus        94 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  173 (279)
                      ..+.|.++++  ++..  .|+.+.+||+.+....   ..+......                 .+...|.++.|+||+++
T Consensus        20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~---~~~~~~~~~-----------------~~~~~i~~~~~SpDg~~   75 (470)
T d2bgra1          20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSS---VFLENSTFD-----------------EFGHSINDYSISPDGQF   75 (470)
T ss_dssp             CCCEECSSSE--EEEE--SSSCEEEEETTTCCEE---EEECTTTTT-----------------TSSSCCCEEEECTTSSE
T ss_pred             cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEE---EEEchhhhh-----------------hccCccceeEECCCCCE
Confidence            3578999886  6654  4788999998764322   112211110                 11123789999999999


Q ss_pred             EEEecC---------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643          174 IFSAAG---------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD  244 (279)
Q Consensus       174 l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  244 (279)
                      |+.++.         ++.+.+||+.+++. ..+..+...+..+.|||||++||.. .++.+++|+..+++..+.......
T Consensus        76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCC
Confidence            988753         57789999998764 5577788999999999999999986 577899999998877655432211


Q ss_pred             -ccccC---------cceeeeEEEEcCCCCEEEEEcCcc
Q 023643          245 -KQLKG---------VISCVSCITLDASESWLVRVRATN  273 (279)
Q Consensus       245 -~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~  273 (279)
                       ..+.+         .......+.|+|||++|+....|.
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence             00011         122346678999999999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.31  E-value=2.2e-09  Score=80.68  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             eeEEEcCCCC----eE-EEecCCCeEEEEecCCCcEEE------Eeec-CCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          163 NAIAVDPQGG----AI-FSAAGDSCAYCWDVESSRIKM------VFKG-HSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       163 ~~~~~~~~~~----~l-~~~~~d~~i~i~d~~~~~~~~------~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      +.++|+|++.    .| ++-+..+.|..||+.....+.      .+.. .......|++.++|++.++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6789988764    34 445677899999876432222      1211 2234678999999999888888899999998


Q ss_pred             CCCceEEEecCCccccccCcceeeeEEEEcCCCC-EEEEEcCcceEEeC
Q 023643          231 KSGKCIKVIDPVKDKQLKGVISCVSCITLDASES-WLVRVRATNYVILF  278 (279)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~w  278 (279)
                      +.++.+..+.        ......++++|.|+++ +++|.+.+|.|..+
T Consensus       255 ~~g~~~~~i~--------~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         255 DGGQPKMRIR--------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             TCBSCSEEEE--------CSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEE--------CCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            8887777663        3334678999999987 45666777877653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=2.7e-09  Score=77.97  Aligned_cols=193  Identities=10%  Similarity=0.028  Sum_probs=126.7

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      ....+++++    ++.++++....+.+++++-.+.                   ..+.... ......++++.+++.  +
T Consensus        58 ~p~gvav~~----~g~i~v~d~~~~~i~~~~~~~~-------------------~~~~~~~-~~~~p~~iavd~~g~--i  111 (260)
T d1rwia_          58 QPQGLAVDG----AGTVYVTDFNNRVVTLAAGSNN-------------------QTVLPFD-GLNYPEGLAVDTQGA--V  111 (260)
T ss_dssp             SCCCEEECT----TCCEEEEETTTEEEEECTTCSC-------------------CEECCCC-SCCSEEEEEECTTCC--E
T ss_pred             CceEEEEcC----CCCEEEeeeeeceeeeeeeccc-------------------eeeeeee-eeeecccccccccce--e
Confidence            346788888    8888888777777776654431                   1111222 224568899999887  7


Q ss_pred             EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643          107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  186 (279)
                      +++-.....+..++....  ........+                       ......++++++++.+++...++.|..+
T Consensus       112 ~v~d~~~~~~~~~~~~~~--~~~~~~~~~-----------------------~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_         112 YVADRGNNRVVKLAAGSK--TQTVLPFTG-----------------------LNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             EEEEGGGTEEEEECTTCS--SCEECCCCS-----------------------CCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             Eeeccccccccccccccc--eeeeeeecc-----------------------cCCcceeeecCCCCEeeecccccccccc
Confidence            776666666666664321  111111111                       0014688999999988888888899999


Q ss_pred             ecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE
Q 023643          187 DVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL  266 (279)
Q Consensus       187 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  266 (279)
                      |...................|++.++|+++++....+.|..++..... ...+.       ...-.....|+++++|.++
T Consensus       167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~-------~~~~~~P~~i~~d~~g~l~  238 (260)
T d1rwia_         167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLP-------FTGLNTPLAVAVDSDRTVY  238 (260)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECC-------CCSCCCEEEEEECTTCCEE
T ss_pred             ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEc-------cCCCCCeEEEEEeCCCCEE
Confidence            987554433323345667899999999999998889999888765432 22321       1222345789999999988


Q ss_pred             EEEcCcceEEeC
Q 023643          267 VRVRATNYVILF  278 (279)
Q Consensus       267 ~~~~~d~~i~~w  278 (279)
                      ++-..++.|+.+
T Consensus       239 vad~~~~rI~~i  250 (260)
T d1rwia_         239 VADRGNDRVVKL  250 (260)
T ss_dssp             EEEGGGTEEEEE
T ss_pred             EEECCCCEEEEE
Confidence            887778888754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.24  E-value=2.6e-09  Score=79.88  Aligned_cols=197  Identities=10%  Similarity=-0.047  Sum_probs=131.3

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      .+..++++|    ||+++++...+++|..|+....                     ...+......+.+++|.|++.  +
T Consensus        29 ~~e~iAv~p----dG~l~vt~~~~~~I~~i~p~g~---------------------~~~~~~~~~~~~gla~~~dG~--l   81 (302)
T d2p4oa1          29 FLENLASAP----DGTIFVTNHEVGEIVSITPDGN---------------------QQIHATVEGKVSGLAFTSNGD--L   81 (302)
T ss_dssp             CEEEEEECT----TSCEEEEETTTTEEEEECTTCC---------------------EEEEEECSSEEEEEEECTTSC--E
T ss_pred             CcCCEEECC----CCCEEEEeCCCCEEEEEeCCCC---------------------EEEEEcCCCCcceEEEcCCCC--e
Confidence            577899999    9999999999999988886642                     122333456789999999998  8


Q ss_pred             EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643          107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  186 (279)
                      +++...++.+..++...............                      .....+.+++.++++++++-+.++.+..+
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          82 VATGWNADSIPVVSLVKSDGTVETLLTLP----------------------DAIFLNGITPLSDTQYLTADSYRGAIWLI  139 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECT----------------------TCSCEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCceEEEEEecccccceeeccccC----------------------CccccceeEEccCCCEEeeccccccceee
Confidence            88888888888888643211111110000                      00125788999999988888889999999


Q ss_pred             ecCCCcEEEEeec----------CCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeE
Q 023643          187 DVESSRIKMVFKG----------HSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSC  256 (279)
Q Consensus       187 d~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  256 (279)
                      |...+........          .......+.++. +..+++.+..+.|..++............      .........
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~pdg  212 (302)
T d2p4oa1         140 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEI------FVEQTNIDD  212 (302)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEE------EEESCCCSS
T ss_pred             eccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccc------ccCCCCCcc
Confidence            9887654332221          112345666653 45667778889999888765432221100      111223567


Q ss_pred             EEEcCCCCEEEEEcCcceEEeCC
Q 023643          257 ITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       257 ~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++|+++|+++++...++.|..++
T Consensus       213 ia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         213 FAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             EEEBTTCCEEEECBTTCCEEEEC
T ss_pred             eEECCCCCEEEEEcCCCcEEEEC
Confidence            99999999888877788777653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=2.4e-09  Score=78.23  Aligned_cols=193  Identities=14%  Similarity=0.091  Sum_probs=122.1

Q ss_pred             ceEEEEECCCCCCCCCEEEEe-cCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           27 TVFRTVWGPSKDGSPDTIVIA-SSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      .-..+++.+    ++++.++. +..+.|..++....                  ........+. .....+++.+++.  
T Consensus        15 ~P~~vavd~----dG~i~v~~~~~~~~i~~~~~~~~------------------~~~~~~~~~~-~~p~gvav~~~g~--   69 (260)
T d1rwia_          15 SPSGVAVDS----AGNVYVTSEGMYGRVVKLATGST------------------GTTVLPFNGL-YQPQGLAVDGAGT--   69 (260)
T ss_dssp             CEEEEEECT----TCCEEEEECSSSCEEEEEC----------------------CEEECCCCSC-CSCCCEEECTTCC--
T ss_pred             CCCEEEEcC----CCCEEEEEcCCCCEEEEEcCCCc------------------eEEEeccCCc-cCceEEEEcCCCC--
Confidence            346889999    88876664 45577777776652                  1111222222 2356788999887  


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      ++++....+.+++++-..   ........+.                       .....++++++++++++-..+..+..
T Consensus        70 i~v~d~~~~~i~~~~~~~---~~~~~~~~~~-----------------------~~p~~iavd~~g~i~v~d~~~~~~~~  123 (260)
T d1rwia_          70 VYVTDFNNRVVTLAAGSN---NQTVLPFDGL-----------------------NYPEGLAVDTQGAVYVADRGNNRVVK  123 (260)
T ss_dssp             EEEEETTTEEEEECTTCS---CCEECCCCSC-----------------------CSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             EEEeeeeeceeeeeeecc---ceeeeeeeee-----------------------eecccccccccceeEeeccccccccc
Confidence            777777666776665322   1111111110                       12478999999988777666777888


Q ss_pred             EecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCE
Q 023643          186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESW  265 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  265 (279)
                      ++...................++++++++.+++...++.|..+|....... .+.       .........++++++|++
T Consensus       124 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~-------~~~~~~p~gi~~d~~g~l  195 (260)
T d1rwia_         124 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLP-------FTDITAPWGIAVDEAGTV  195 (260)
T ss_dssp             ECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECC-------CSSCCSEEEEEECTTCCE
T ss_pred             cccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eee-------ccccCCCccceeeeeeee
Confidence            887654433222222345578999999999888888999999997654433 321       122334578999999998


Q ss_pred             EEEEcCcceEEeC
Q 023643          266 LVRVRATNYVILF  278 (279)
Q Consensus       266 l~~~~~d~~i~~w  278 (279)
                      +++....+.|..+
T Consensus       196 ~vsd~~~~~i~~~  208 (260)
T d1rwia_         196 YVTEHNTNQVVKL  208 (260)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             eeeecCCCEEEEE
Confidence            8888878877654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.3e-08  Score=73.08  Aligned_cols=217  Identities=7%  Similarity=0.021  Sum_probs=118.5

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCC---cEEEEeCCCCCcccccccCCcccceeeec
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDG---SITSYSIPSCISKLPLGLSNSKVQQLLGI   80 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   80 (279)
                      .|.|-|.++.....   +..+...+...+|||    ||+.||-.....   .+.+.+...                    
T Consensus        20 ~l~i~d~dG~~~~~---l~~~~~~~~sP~wSP----DGk~IAf~~~~~~~~~~~~~~~~~--------------------   72 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLAN--------------------   72 (269)
T ss_dssp             EEEEEETTSCSCEE---EEEESSCEEEEEECT----TSSEEEEEECTTSSCEEEEEETTT--------------------
T ss_pred             EEEEEcCCCCCcEE---EecCCCceeeeEECC----CCCEEEEEEeeccCcceeeeeccc--------------------
Confidence            35566777754333   333457788999999    999998764332   355555554                    


Q ss_pred             cccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCccee----------eec-cC----------cc
Q 023643           81 EPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPI----------NLQ-GN----------HV  138 (279)
Q Consensus        81 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~----------~~~-~~----------~~  138 (279)
                      .....+..+.+......|+|++.  .++... .++...++............          ... ..          ..
T Consensus        73 ~~~~~~~~~~~~~~~~~~spdg~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  150 (269)
T d2hqsa1          73 GAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR  150 (269)
T ss_dssp             CCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CceeEEeeeecccccceecCCCC--eeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCC
Confidence            22233445667788999999998  555433 34333333322111100000          000 00          00


Q ss_pred             cceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC-C--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcE
Q 023643          139 KPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD-S--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQ  215 (279)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~  215 (279)
                      ..++...... .................|+|++..++..+.+ +  .+.+.|...+..  ....+........|+|||++
T Consensus       151 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~  227 (269)
T d2hqsa1         151 PQVYKVNING-GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTM  227 (269)
T ss_dssp             CEEEEEETTS-SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSE
T ss_pred             ceEeeeeccc-ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCE
Confidence            0111111000 0000111122335567899999987766544 3  455556554443  23334556678899999999


Q ss_pred             EEEecC---CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcC
Q 023643          216 IVTGSE---DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDA  261 (279)
Q Consensus       216 l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  261 (279)
                      |+..+.   ...|.++++..+... .+        ......+...+|+|
T Consensus       228 i~f~s~~~~~~~l~~~~~dg~~~~-~l--------t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         228 VIYSSSQGMGSVLNLVSTDGRFKA-RL--------PATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCEE-EC--------CCSSSEEEEEEECC
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEE-EE--------eCCCCcEEeEEeCC
Confidence            875543   446899998766544 44        34445677889998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=4.8e-08  Score=71.97  Aligned_cols=155  Identities=10%  Similarity=0.107  Sum_probs=106.7

Q ss_pred             ccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643           90 DGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP  169 (279)
Q Consensus        90 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  169 (279)
                      ......+++.+++.  ++++....+.+.+++.+.    .....+...                    .+......+++.+
T Consensus       113 ~~~p~~~avd~~G~--i~v~~~~~~~~~~~~~~g----~~~~~~g~~--------------------~~~~~~~~i~~d~  166 (279)
T d1q7fa_         113 LQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNG----NVLHKFGCS--------------------KHLEFPNGVVVND  166 (279)
T ss_dssp             CSCEEEEEECTTSC--EEEEETTTTEEEEECTTS----CEEEEEECT--------------------TTCSSEEEEEECS
T ss_pred             ccccceeccccCCc--EEEEeeccceeeEeccCC----ceeeccccc--------------------ccccccceeeecc
Confidence            44567888888887  777766677777776431    111111110                    0011257888999


Q ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecC-CCeEEEEeCCCCceEEEecCCcccc
Q 023643          170 QGGAIFSAAGDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSE-DGTARIWDCKSGKCIKVIDPVKDKQ  246 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~  246 (279)
                      +++.+++....+.|++||.. ++.+.++.  +.......|++.++|+.+++-.. ++.|.+|+ .+|+.+..+...    
T Consensus       167 ~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~----  240 (279)
T d1q7fa_         167 KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK----  240 (279)
T ss_dssp             SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES----
T ss_pred             ceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC----
Confidence            99888888888999999975 67777763  34456789999999998887554 45799998 568887777431    


Q ss_pred             ccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          247 LKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       247 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                        ........+++.|+|.++++ +.++.|++|.
T Consensus       241 --~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr  270 (279)
T d1q7fa_         241 --VKHAQCFDVALMDDGSVVLA-SKDYRLYIYR  270 (279)
T ss_dssp             --SCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred             --CCCCCEeEEEEeCCCcEEEE-eCCCeEEEEE
Confidence              22234678999999986655 5688899873

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=9.1e-08  Score=70.43  Aligned_cols=202  Identities=12%  Similarity=0.176  Sum_probs=129.2

Q ss_pred             ceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceE
Q 023643           27 TVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDAL  106 (279)
Q Consensus        27 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  106 (279)
                      .-..++++|    +++++++-..+..|++||.+.. ....+.            . ...-.+.......+.+.++....+
T Consensus        24 ~P~gvavd~----dg~i~VaD~~n~rI~v~d~~G~-~~~~~~------------~-~~~~~~~~~~p~~~~~~~~~~~~~   85 (279)
T d1q7fa_          24 EPSGVAVNA----QNDIIVADTNNHRIQIFDKEGR-FKFQFG------------E-CGKRDSQLLYPNRVAVVRNSGDII   85 (279)
T ss_dssp             CEEEEEECT----TCCEEEEEGGGTEEEEECTTSC-EEEEEC------------C-BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             CccEEEEcC----CCCEEEEECCCCEEEEEeCCCC-EEEEec------------c-cCCCcccccccccccccccccccc
Confidence            357899999    8998888778889999997631 111000            0 000011122344556555544123


Q ss_pred             EEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEE
Q 023643          107 LLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCW  186 (279)
Q Consensus       107 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  186 (279)
                      ++..+.++.|..++...    .....+.....                     .....+++.+++..+++....+.+.++
T Consensus        86 ~~~~~~~~~i~~~~~~g----~~~~~~~~~~~---------------------~~p~~~avd~~G~i~v~~~~~~~~~~~  140 (279)
T d1q7fa_          86 VTERSPTHQIQIYNQYG----QFVRKFGATIL---------------------QHPRGVTVDNKGRIIVVECKVMRVIIF  140 (279)
T ss_dssp             EEECGGGCEEEEECTTS----CEEEEECTTTC---------------------SCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             eeccCCccccccccccc----cceeecCCCcc---------------------cccceeccccCCcEEEEeeccceeeEe
Confidence            33344556676666421    11111111111                     124688999999988888878889999


Q ss_pred             ecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCC
Q 023643          187 DVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASES  264 (279)
Q Consensus       187 d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  264 (279)
                      +.. ++.+..+.  .+......+++.++++.+++....+.|++||. +++.+..+..      .+......+++++++|+
T Consensus       141 ~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~------~g~~~~P~giavD~~G~  212 (279)
T d1q7fa_         141 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGG------EGITNYPIGVGINSNGE  212 (279)
T ss_dssp             CTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESC------TTTSCSEEEEEECTTCC
T ss_pred             ccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecc------cccccCCcccccccCCe
Confidence            864 66666653  34567888999999999999999999999995 5777777632      23444567899999999


Q ss_pred             EEEEEcC-cceEEeCC
Q 023643          265 WLVRVRA-TNYVILFS  279 (279)
Q Consensus       265 ~l~~~~~-d~~i~~wd  279 (279)
                      ++++-+. ++.|.+|+
T Consensus       213 i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         213 ILIADNHNNFNLTIFT  228 (279)
T ss_dssp             EEEEECSSSCEEEEEC
T ss_pred             EEEEECCCCcEEEEEC
Confidence            8877554 44677764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.14  E-value=7.8e-08  Score=72.22  Aligned_cols=206  Identities=10%  Similarity=0.038  Sum_probs=121.0

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..+..++|.+    ++++.++-...++|..|+..+.                   .....+.........+++.+++.  
T Consensus        40 ~~lEG~~~D~----~G~Ly~~D~~~g~I~ri~p~g~-------------------~~~~~~~~~~~~p~gla~~~dG~--   94 (319)
T d2dg1a1          40 LQLEGLNFDR----QGQLFLLDVFEGNIFKINPETK-------------------EIKRPFVSHKANPAAIKIHKDGR--   94 (319)
T ss_dssp             CCEEEEEECT----TSCEEEEETTTCEEEEECTTTC-------------------CEEEEEECSSSSEEEEEECTTSC--
T ss_pred             cCcEeCEECC----CCCEEEEECCCCEEEEEECCCC-------------------eEEEEEeCCCCCeeEEEECCCCC--
Confidence            3456899999    8998888888899999988762                   22222333445678999999987  


Q ss_pred             EEEEeeCC--CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----
Q 023643          106 LLLSCGDD--GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----  179 (279)
Q Consensus       106 ~l~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----  179 (279)
                      ++++...+  ....++.+........ .......                    .....+.+++.++|++.++...    
T Consensus        95 l~va~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~--------------------~~~~~nd~~~d~~G~l~vtd~~~~~~  153 (319)
T d2dg1a1          95 LFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLS--------------------TAYCIDDMVFDSKGGFYFTDFRGYST  153 (319)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCE-EEECSSS--------------------SCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred             EEEEecCCCccceeEEEEcCCCceee-eeccCCC--------------------cccCCcceeEEeccceeecccccccc
Confidence            66654332  2333333322111110 0010000                    0012578899999986665332    


Q ss_pred             --CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCC-ceEEEecCCccccccCcceeee
Q 023643          180 --DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSG-KCIKVIDPVKDKQLKGVISCVS  255 (279)
Q Consensus       180 --d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~  255 (279)
                        .+.+..++...+ .+..+...-.....++|+|+++.| ++-+..+.|..|++... ............. ......--
T Consensus       154 ~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~-~~~~~~Pd  231 (319)
T d2dg1a1         154 NPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-FTGHEGPD  231 (319)
T ss_dssp             BCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-CCSSSEEE
T ss_pred             cCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec-cCCcccee
Confidence              244666665533 333332233456789999998754 66677899999997642 2221111000000 11112346


Q ss_pred             EEEEcCCCCEEEEEcCcceEEeCC
Q 023643          256 CITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       256 ~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      .++++++|++.++....+.|.+||
T Consensus       232 Gl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         232 SCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeEcCCCCEEEEEcCCCEEEEEC
Confidence            799999999888888888888875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=4.7e-08  Score=72.85  Aligned_cols=222  Identities=9%  Similarity=-0.055  Sum_probs=133.6

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIE   81 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   81 (279)
                      +|.|..|+.++.    ...+......+.+++|+|    +++++++...++.+..|+.......               ..
T Consensus        48 ~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~----dG~l~v~~~~~~~~~~~~~~~~~~~---------------~~  104 (302)
T d2p4oa1          48 VGEIVSITPDGN----QQIHATVEGKVSGLAFTS----NGDLVATGWNADSIPVVSLVKSDGT---------------VE  104 (302)
T ss_dssp             TTEEEEECTTCC----EEEEEECSSEEEEEEECT----TSCEEEEEECTTSCEEEEEECTTSC---------------EE
T ss_pred             CCEEEEEeCCCC----EEEEEcCCCCcceEEEcC----CCCeEEEecCCceEEEEEecccccc---------------ee
Confidence            455666665553    223444567899999999    9999999888888988887653211               01


Q ss_pred             ccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCC
Q 023643           82 PDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPE  161 (279)
Q Consensus        82 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (279)
                      .+.. .......+.+.+.+++.  ++++.+.++.+..++......   .........            ...........
T Consensus       105 ~~~~-~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~  166 (302)
T d2p4oa1         105 TLLT-LPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSG---SIWLEHPML------------ARSNSESVFPA  166 (302)
T ss_dssp             EEEE-CTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEE---EEEEECGGG------------SCSSTTCCSCS
T ss_pred             eccc-cCCccccceeEEccCCC--EEeeccccccceeeeccCCcc---eeEecCCcc------------ceeeccCcccc
Confidence            1111 12345578999999987  888888888888888653211   110100000            00000111123


Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEe--ecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEe
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVF--KGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                      ...+.++. +.++++.+..+.|..++..........  -........++++++|+++++...++.|..++.. ++.....
T Consensus       167 ~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~  244 (302)
T d2p4oa1         167 ANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA  244 (302)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred             cccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEE
Confidence            45666654 345566677889999987654322111  1123345679999999998888889999999864 4433333


Q ss_pred             cCCccccccCcceeeeEEEE---cCCCCEEEEEcCc
Q 023643          240 DPVKDKQLKGVISCVSCITL---DASESWLVRVRAT  272 (279)
Q Consensus       240 ~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d  272 (279)
                      ..      ...-...++++|   .+|++.|+.++..
T Consensus       245 ~~------~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         245 QA------EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CG------GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ec------CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            21      122235789999   6688877765443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=2.7e-07  Score=69.20  Aligned_cols=106  Identities=11%  Similarity=0.027  Sum_probs=74.9

Q ss_pred             ceeEEEcCCCCeEEEe-cCCCeEEEEecCCC-cEEEE-------eecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 023643          162 NNAIAVDPQGGAIFSA-AGDSCAYCWDVESS-RIKMV-------FKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKS  232 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~-~~~~~-------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  232 (279)
                      .+.++|+|+++.|+++ +..+.|..||+... .....       ..........|++.++|++.++....+.|.+||. .
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~  257 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-R  257 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-T
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-C
Confidence            3689999999866554 56789999998632 11111       1112234578999999999998889999999994 7


Q ss_pred             CceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          233 GKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      |+.+..+..+..  -.++...+++++|.++...+++.+
T Consensus       258 G~~l~~i~~P~~--~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 GYPIGQILIPGR--DEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SCEEEEEECTTG--GGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcEEEEEeCCCc--CCCcCceeeeEEEeCCCCEEEEEc
Confidence            998888865421  124455688999999877666554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.06  E-value=5.2e-08  Score=74.63  Aligned_cols=163  Identities=9%  Similarity=0.074  Sum_probs=96.4

Q ss_pred             CeEEEEecCCCCceEEEEeeC-CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           92 PAYDVKFYGGNEDALLLSCGD-DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        92 ~v~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      .+.++.|+|+++  ++++++. ...|.+|+..............           ..         .+....+.++|+|+
T Consensus       146 h~h~v~~sPdG~--~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~-----------~~---------~~g~gPr~i~f~pd  203 (365)
T d1jofa_         146 GIHGMVFDPTET--YLYSADLTANKLWTHRKLASGEVELVGSVD-----------AP---------DPGDHPRWVAMHPT  203 (365)
T ss_dssp             CEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCEEEEEEEE-----------CS---------STTCCEEEEEECTT
T ss_pred             cceEEEECCCCC--EEEEeeCCCCEEEEEEccCCCceeecccee-----------ec---------CCCCceEEEEECCC
Confidence            378999999998  6666653 4578888764321111110000           00         00112578999999


Q ss_pred             CCeEEEec-CCCeEEEEecCCCcEE--EEee-----------------cCCcceEEEEEcCCCcEEEEecC------CCe
Q 023643          171 GGAIFSAA-GDSCAYCWDVESSRIK--MVFK-----------------GHSDYLHCIVARNSTNQIVTGSE------DGT  224 (279)
Q Consensus       171 ~~~l~~~~-~d~~i~i~d~~~~~~~--~~~~-----------------~~~~~i~~i~~~~~~~~l~~~~~------d~~  224 (279)
                      ++++++.. .++.|.+|+...++..  ....                 .+......+.++|+|++|+++..      .+.
T Consensus       204 g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~  283 (365)
T d1jofa_         204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence            99876554 5789999998765322  1111                 11224567899999999887642      334


Q ss_pred             EEEEeCCCCceEEEec-CCccccccCcceeeeEEEEcC-CCCEEEEE-cCcceEEeCC
Q 023643          225 ARIWDCKSGKCIKVID-PVKDKQLKGVISCVSCITLDA-SESWLVRV-RATNYVILFS  279 (279)
Q Consensus       225 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~~d~~i~~wd  279 (279)
                      |..|++.....+.... ...   .........+++++| +|++|+++ ..++.|.+|+
T Consensus       284 i~~~~~~~~g~~~~~~~~~~---~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         284 IAGFKLRDCGSIEKQLFLSP---TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEEE---CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             EEEEEecCCCceeeEeEeeE---EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            7778776532222110 000   011223346789998 78988766 4678898884

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.06  E-value=3.6e-08  Score=75.59  Aligned_cols=236  Identities=11%  Similarity=0.074  Sum_probs=124.3

Q ss_pred             Cceeeeccc--cccccceeeee-ecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeee
Q 023643            3 GDSTNWDED--AYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLG   79 (279)
Q Consensus         3 G~v~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   79 (279)
                      |.|..+..+  +.....++... .....+.-|+|+|    ++++|.+... +.+..|.+........             
T Consensus        14 ~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~----d~~~ly~~~~-~~~~~~~i~~~~~~~~-------------   75 (365)
T d1jofa_          14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH----ERKNIYGAAM-KKWSSFAVKSPTEIVH-------------   75 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT----TSSEEEEEEB-TEEEEEEEEETTEEEE-------------
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcC----CCCEEEEEeC-CcEEEEEEeCCCCeEE-------------
Confidence            455555444  33333333222 2345567799999    8898877654 5688887764211000             


Q ss_pred             ccccccccCCccCeEEEEecCCCCceEEEEee-CCCcEEEeecCCCccCcceeeec--cCcccceEEeecCCCCCccccC
Q 023643           80 IEPDGFLHGHDGPAYDVKFYGGNEDALLLSCG-DDGRICGWRWKEFTESKVPINLQ--GNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        80 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                          ............+.++++++.-+++++. ..+++..+.+.............  +.............        
T Consensus        76 ----~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~--------  143 (365)
T d1jofa_          76 ----EASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE--------  143 (365)
T ss_dssp             ----EEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT--------
T ss_pred             ----EeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCC--------
Confidence                0000011223456677777521233332 34566655543221111111111  11111111111111        


Q ss_pred             CCCCCceeEEEcCCCCeEEEecC-CCeEEEEecCC-CcEE--EEee--cCCcceEEEEEcCCCcEE-EEecCCCeEEEEe
Q 023643          157 SPVPENNAIAVDPQGGAIFSAAG-DSCAYCWDVES-SRIK--MVFK--GHSDYLHCIVARNSTNQI-VTGSEDGTARIWD  229 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~-~~~~--~~~~--~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd  229 (279)
                        ...+.++.|+|++++++++.. ...|.+|+... +...  ....  ......+.++|+|+++++ ++.-.+++|.+|+
T Consensus       144 --~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         144 --NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             --TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence              112679999999998887754 45788887654 3222  2222  234578999999999876 5555789999999


Q ss_pred             CCCCceEEEec-----CC------ccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          230 CKSGKCIKVID-----PV------KDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       230 ~~~~~~~~~~~-----~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      +..++......     ..      .......+......+.++|+|++|+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            87654322211     00      0001123334567889999999998764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.87  E-value=3.4e-06  Score=62.31  Aligned_cols=202  Identities=11%  Similarity=0.045  Sum_probs=119.8

Q ss_pred             CceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            3 GDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      +.|.-||+++...   ..+ .....+.++++.+    ++.++++ +.+ -|.++|..+++..                 .
T Consensus        40 ~~I~r~d~~~g~~---~~~-~~~~~~~~i~~~~----dg~l~va-~~~-gl~~~d~~tg~~~-----------------~   92 (295)
T d2ghsa1          40 RELHELHLASGRK---TVH-ALPFMGSALAKIS----DSKQLIA-SDD-GLFLRDTATGVLT-----------------L   92 (295)
T ss_dssp             TEEEEEETTTTEE---EEE-ECSSCEEEEEEEE----TTEEEEE-ETT-EEEEEETTTCCEE-----------------E
T ss_pred             CEEEEEECCCCeE---EEE-ECCCCcEEEEEec----CCCEEEE-EeC-ccEEeecccceee-----------------E
Confidence            3444555555432   112 1345678888888    7777665 444 4888998874311                 1


Q ss_pred             cccccC--CccCeEEEEecCCCCceEEEEeeCC----CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccC
Q 023643           83 DGFLHG--HDGPAYDVKFYGGNEDALLLSCGDD----GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGAL  156 (279)
Q Consensus        83 ~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (279)
                      +.....  ....++.+.+.|++.  +.++....    +.-.+|.+....   ....... .                   
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~---~~~~~~~-~-------------------  147 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGK---VTKLFAD-I-------------------  147 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTE---EEEEEEE-E-------------------
T ss_pred             EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCc---EEEEeec-c-------------------
Confidence            111111  123578888999987  55543321    223344432211   0000000 0                   


Q ss_pred             CCCCCceeEEEcCCCCeEE-EecCCCeEEEEecCCC------cE--EEEeecCCcceEEEEEcCCCcEEEEecCCCeEEE
Q 023643          157 SPVPENNAIAVDPQGGAIF-SAAGDSCAYCWDVESS------RI--KMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARI  227 (279)
Q Consensus       157 ~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~------~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v  227 (279)
                         ...+.++|+++++.++ +-+..+.|..|++...      +.  ...+.+..+....+++..+|++.++.-..+.|..
T Consensus       148 ---~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~  224 (295)
T d2ghsa1         148 ---SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR  224 (295)
T ss_dssp             ---SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             ---CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEE
Confidence               0137889999998654 4556788999987421      11  1223334566789999999998888777889999


Q ss_pred             EeCCCCceEEEecCCccccccCcceeeeEEEEc-CCCCEEEE
Q 023643          228 WDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD-ASESWLVR  268 (279)
Q Consensus       228 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  268 (279)
                      || ..|+.+..+..+        ...+++++|- |+.+.|+.
T Consensus       225 ~d-p~G~~~~~i~lP--------~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         225 YD-TDGNHIARYEVP--------GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EC-TTCCEEEEEECS--------CSBEEEEEEESTTSCEEEE
T ss_pred             ec-CCCcEeeEecCC--------CCceEEEEEeCCCCCEEEE
Confidence            99 478888888532        2458999996 66655543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.4e-07  Score=74.51  Aligned_cols=230  Identities=13%  Similarity=0.052  Sum_probs=123.3

Q ss_pred             CCceeeeccccccccceeee-eecccceEEEEECCCCCCCCCEEEEec---------CCCcEEEEeCCCCCcccccccCC
Q 023643            2 CGDSTNWDEDAYRKSILKER-EILTRTVFRTVWGPSKDGSPDTIVIAS---------SDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      +|.+.+||+++.....+... ....-.+....|||    |+++++...         ..+.+.++|+.++.         
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp----D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~---------  102 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGD---------  102 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCC---------
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECC----CCCeEEEEEcccceeEeeccccEEEEEccCCc---------
Confidence            67899999887754333222 12234677788999    899887753         35678899998743         


Q ss_pred             cccceeeeccccccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCC
Q 023643           72 SKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKG  151 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (279)
                              .+++.........+....|+|+|+  .+|-.. ++.|.+.+.....   ............+..-..     
T Consensus       103 --------~~~l~~~~~~~~~l~~~~wSPDG~--~iafv~-~~nl~~~~~~~~~---~~~lt~~g~~~~i~nG~~-----  163 (465)
T d1xfda1         103 --------PQSLDPPEVSNAKLQYAGWGPKGQ--QLIFIF-ENNIYYCAHVGKQ---AIRVVSTGKEGVIYNGLS-----  163 (465)
T ss_dssp             --------CEECCCTTCCSCCCSBCCBCSSTT--CEEEEE-TTEEEEESSSSSC---CEEEECCCBTTTEEEEEC-----
T ss_pred             --------eeeccCccCCccccceeeeccCCc--eEEEEe-cceEEEEecCCCc---eEEEecccCcceeecccc-----
Confidence                    122222222334456678999998  776655 5677777764321   111111111111111000     


Q ss_pred             ccccC-CCCCCceeEEEcCCCCeEEEecC-CC---------------------------------eEEEEecCCCcEEEE
Q 023643          152 PWGAL-SPVPENNAIAVDPQGGAIFSAAG-DS---------------------------------CAYCWDVESSRIKMV  196 (279)
Q Consensus       152 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d~---------------------------------~i~i~d~~~~~~~~~  196 (279)
                      .|... .-...-..+-|||||+.|+.... +.                                 .+.++|+.++.....
T Consensus       164 d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~  243 (465)
T d1xfda1         164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE  243 (465)
T ss_dssp             CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred             chhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEE
Confidence            00000 00001146779999998887532 11                                 344555544332211


Q ss_pred             e------ecCCcceEEEEEcCCCcEEEEecC----CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEE
Q 023643          197 F------KGHSDYLHCIVARNSTNQIVTGSE----DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWL  266 (279)
Q Consensus       197 ~------~~~~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  266 (279)
                      .      ......+..+.|+|+++.++....    ...|.++|..+++....+...... .-  ...-....|+|+|+.+
T Consensus       244 ~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~-wv--~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA-WL--HRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS-CC--CCCCCCCEECTTSCSE
T ss_pred             EeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCc-eE--eccCCceeEccCCCee
Confidence            1      112335778899999887665322    235888999999876655321100 00  0011345688888743

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=4.8e-06  Score=62.03  Aligned_cols=206  Identities=14%  Similarity=0.139  Sum_probs=119.7

Q ss_pred             cceEEEEECCCCCCCCCEEEEecC-------CCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEe
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASS-------DGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKF   98 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~   98 (279)
                      .....++|.|    +|+++++...       +|+|..||..+......             .  ......-.+....+.|
T Consensus        18 ~g~EGpa~d~----dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~-------------~--~~~~~~~~g~P~Gl~~   78 (314)
T d1pjxa_          18 PGAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-------------C--KPEVNGYGGIPAGCQC   78 (314)
T ss_dssp             TTCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-------------E--CCEETTEECCEEEEEE
T ss_pred             CCCeEeEEeC----CCCEEEEECccccccccCCEEEEEECCCCcEEEE-------------E--CCccccCCCcceeEEE
Confidence            3456778999    8998877543       46788888876421100             0  0001111233578999


Q ss_pred             cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEec
Q 023643           99 YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAA  178 (279)
Q Consensus        99 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  178 (279)
                      .+++.  .++++.....|...+.+............+...                     ...+.++++++|++.++-.
T Consensus        79 ~~dg~--~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~---------------------~~pndl~~d~~G~lyvtd~  135 (314)
T d1pjxa_          79 DRDAN--QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRM---------------------QGCNDCAFDYEGNLWITAP  135 (314)
T ss_dssp             CSSSS--EEEEEETTTEEEEEETTSCEEECCSBCTTSCBC---------------------BCCCEEEECTTSCEEEEEC
T ss_pred             eCCCC--EEEEEECCCeEEEEeCCCcEEEEEecccccccc---------------------CCCcEEEECCCCCEEEecC
Confidence            99987  777777777788887643211100000011000                     0146789999998776632


Q ss_pred             C---------------CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCc-----EEEEecCCCeEEEEeCCCCceEEE
Q 023643          179 G---------------DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTN-----QIVTGSEDGTARIWDCKSGKCIKV  238 (279)
Q Consensus       179 ~---------------d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~d~~i~vwd~~~~~~~~~  238 (279)
                      .               .|.|..++.. ++...... .-.....++|+|++.     ++++-+..+.|..||+.....+..
T Consensus       136 ~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         136 AGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             BCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred             ccCcccccccceeccCCceEEEEeec-CceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce
Confidence            1               3456556543 44333322 333457889988754     566667889999998764322221


Q ss_pred             ---ecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          239 ---IDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       239 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                         +....    .......-.++++++|++.++....+.|.+||
T Consensus       214 ~~~~~~~~----~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         214 KKVWGHIP----GTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEECC----CCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeEEEEcc----ccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence               10000    11223356899999999888887788888875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=2.5e-05  Score=57.46  Aligned_cols=194  Identities=11%  Similarity=0.078  Sum_probs=116.8

Q ss_pred             EEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCceEEEE
Q 023643           30 RTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLS  109 (279)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  109 (279)
                      +..|++.   ++.+..+=-..+.|..||..++.                   . ..+. ....+.++.+.+++.  +++ 
T Consensus        22 gp~wd~~---~~~l~wvDi~~~~I~r~d~~~g~-------------------~-~~~~-~~~~~~~i~~~~dg~--l~v-   74 (295)
T d2ghsa1          22 GPTFDPA---SGTAWWFNILERELHELHLASGR-------------------K-TVHA-LPFMGSALAKISDSK--QLI-   74 (295)
T ss_dssp             EEEEETT---TTEEEEEEGGGTEEEEEETTTTE-------------------E-EEEE-CSSCEEEEEEEETTE--EEE-
T ss_pred             CCeEECC---CCEEEEEECCCCEEEEEECCCCe-------------------E-EEEE-CCCCcEEEEEecCCC--EEE-
Confidence            4568872   56666665577889999988731                   1 1121 234678899988875  554 


Q ss_pred             eeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC----CCeEEE
Q 023643          110 CGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG----DSCAYC  185 (279)
Q Consensus       110 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i  185 (279)
                      ++.+ .+.++|..+.+.. .........                    +...++.+.+.|+|++.++...    .+.-.+
T Consensus        75 a~~~-gl~~~d~~tg~~~-~l~~~~~~~--------------------~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          75 ASDD-GLFLRDTATGVLT-LHAELESDL--------------------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             EETT-EEEEEETTTCCEE-EEECSSTTC--------------------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             EEeC-ccEEeecccceee-EEeeeecCC--------------------CcccceeeEECCCCCEEEEeccccccccceeE
Confidence            4554 4888887643211 111111100                    0012578899999986665432    234566


Q ss_pred             EecCCCcEEEEeecCCcceEEEEEcCCCcE-EEEecCCCeEEEEeCCCC------ceEEEecCCccccccCcceeeeEEE
Q 023643          186 WDVESSRIKMVFKGHSDYLHCIVARNSTNQ-IVTGSEDGTARIWDCKSG------KCIKVIDPVKDKQLKGVISCVSCIT  258 (279)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~  258 (279)
                      |.+..++....+. .-.....++|+++++. +++-+..+.|..|++...      +....+..      .+.....-.++
T Consensus       133 ~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~------~~~~g~pdG~~  205 (295)
T d2ghsa1         133 YHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS------TGIKGGMDGSV  205 (295)
T ss_dssp             EEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC------TTSSSEEEEEE
T ss_pred             eeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc------CcccccccceE
Confidence            6666676555443 2334578999999875 566677889999887431      11111111      23344567888


Q ss_pred             EcCCCCEEEEEcCcceEEeCC
Q 023643          259 LDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       259 ~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      ++.+|++.++.-..+.|..||
T Consensus       206 vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         206 CDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             ECTTSCEEEEEETTTEEEEEC
T ss_pred             EcCCCCEEeeeeCCCceEEec
Confidence            999998877776677777765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=5e-05  Score=54.76  Aligned_cols=97  Identities=9%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             eeEEEcCCCCeEEE-ecCCC--eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCC---eEEEEeCCCCceE
Q 023643          163 NAIAVDPQGGAIFS-AAGDS--CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDG---TARIWDCKSGKCI  236 (279)
Q Consensus       163 ~~~~~~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~  236 (279)
                      ....+++++..++. ...++  .|...++..+.... +...........|+|+++.++..+.++   .+.+.+...+.. 
T Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-  207 (269)
T d2hqsa1         130 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-  207 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred             cccccccccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeecccccc-
Confidence            34456666664443 33344  46666666554333 334556677789999999887766544   355556555443 


Q ss_pred             EEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          237 KVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ..+         ..........|+|||+.|+-.+
T Consensus       208 ~~~---------~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         208 QVL---------SSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             EEC---------CCSSSCEEEEECTTSSEEEEEE
T ss_pred             eEe---------ecCccccceEECCCCCEEEEEE
Confidence            222         2233456778999999887544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.5e-07  Score=70.27  Aligned_cols=150  Identities=10%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             EEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEE
Q 023643           96 VKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIF  175 (279)
Q Consensus        96 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  175 (279)
                      ..|.+++.  ++. -..+|.|.+||+.+.... ..  +.......                   ..+....|+||+++++
T Consensus        22 ~~W~~~~~--~~~-~~~~g~i~~~~~~~~~~~-~l--~~~~~~~~-------------------~~~~~~~~SpD~~~vl   76 (465)
T d1xfda1          22 AKWISDTE--FIY-REQKGTVRLWNVETNTST-VL--IEGKKIES-------------------LRAIRYEISPDREYAL   76 (465)
T ss_dssp             CCBSSSSC--BCC-CCSSSCEEEBCGGGCCCE-EE--ECTTTTTT-------------------TTCSEEEECTTSSEEE
T ss_pred             CEEeCCCc--EEE-EeCCCcEEEEECCCCCEE-EE--EcCccccc-------------------cccceeEECCCCCeEE
Confidence            36888876  554 456788999998654321 11  11111100                   0246778999999877


Q ss_pred             Eec---------CCCeEEEEecCCCcEEEEee--cCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCcc
Q 023643          176 SAA---------GDSCAYCWDVESSRIKMVFK--GHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKD  244 (279)
Q Consensus       176 ~~~---------~d~~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  244 (279)
                      ...         ..+.+.++|+.+++......  .....+....|||+|+.||-.. ++.|.+.+...+...+.......
T Consensus        77 ~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1          77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT
T ss_pred             EEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc
Confidence            653         35789999999886544322  2344566688999999988765 67899999887766655432110


Q ss_pred             -ccccCcc---------eeeeEEEEcCCCCEEEEEcC
Q 023643          245 -KQLKGVI---------SCVSCITLDASESWLVRVRA  271 (279)
Q Consensus       245 -~~~~~~~---------~~v~~~~~~~~~~~l~~~~~  271 (279)
                       ..+.+..         ..-.++-|||||++||....
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence             0111111         11246789999999998754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=0.00013  Score=52.73  Aligned_cols=87  Identities=15%  Similarity=0.023  Sum_probs=50.5

Q ss_pred             CCceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecC----CC--cEEEEeCCCCCcccccccCCcccc
Q 023643            2 CGDSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASS----DG--SITSYSIPSCISKLPLGLSNSKVQ   75 (279)
Q Consensus         2 dG~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----dg--~i~iw~~~~~~~~~~~~~~~~~~~   75 (279)
                      +|.|.+.|+++...   +.+..+.+.+...+|||    ||+.||....    +.  .|.+++..++......        
T Consensus        20 ~~dl~~~d~~~g~~---~~Lt~~~~~~~~p~~SP----DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt--------   84 (281)
T d1k32a2          20 CDDLWEHDLKSGST---RKIVSNLGVINNARFFP----DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT--------   84 (281)
T ss_dssp             TTEEEEEETTTCCE---EEEECSSSEEEEEEECT----TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC--------
T ss_pred             CCcEEEEECCCCCE---EEEecCCCcccCEEECC----CCCEEEEEEeeCCCCCceEEEEEEecCCceEEee--------
Confidence            56677778887653   34445667788999999    9999886432    21  3666666653211000        


Q ss_pred             eeeeccccccccCCccCeEEEEecCCCCceEEEEe
Q 023643           76 QLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSC  110 (279)
Q Consensus        76 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  110 (279)
                           ..-..............|+|+++  .|+..
T Consensus        85 -----~~~~~~~~~~~~~~~~~~spdg~--~l~~~  112 (281)
T d1k32a2          85 -----YFSGKSTGRRMFTDVAGFDPDGN--LIIST  112 (281)
T ss_dssp             -----CCCEEEETTEECSEEEEECTTCC--EEEEE
T ss_pred             -----ecCCCccCccccccccccCCCCC--EEEEE
Confidence                 00000011223456788999998  66654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=9.3e-05  Score=53.52  Aligned_cols=101  Identities=9%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             EEcCC--CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecC----C--CeEEEEeCCCCceEE
Q 023643          166 AVDPQ--GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSE----D--GTARIWDCKSGKCIK  237 (279)
Q Consensus       166 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----d--~~i~vwd~~~~~~~~  237 (279)
                      ..+|+  |+.++-.+ ++.|.+.|+..++.. .+..+.+.+...+|||||+.|+....    +  ..|.+++...++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45677  88777654 467999999988765 45557778889999999999885432    2  247788887776654


Q ss_pred             EecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          238 VIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ......  ............+|+|+|+.|+...
T Consensus        83 lt~~~~--~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSG--KSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCE--EEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCC--CccCccccccccccCCCCCEEEEEE
Confidence            322110  0012233456788999999888653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=0.0057  Score=43.66  Aligned_cols=166  Identities=11%  Similarity=-0.022  Sum_probs=97.7

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ..+..+++...   .+.+..+-...+.|.+.+++...                   ....+.........+++.|...  
T Consensus        79 ~~p~~iAvD~~---~~~lY~~d~~~~~I~~~~~dg~~-------------------~~~l~~~~l~~p~~l~vdp~~g--  134 (263)
T d1npea_          79 GSPEGIALDHL---GRTIFWTDSQLDRIEVAKMDGTQ-------------------RRVLFDTGLVNPRGIVTDPVRG--  134 (263)
T ss_dssp             CCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS-------------------CEEEECSSCSSEEEEEEETTTT--
T ss_pred             ccccEEEEecc---CCeEEEeccCCCEEEEEecCCce-------------------EEEEecccccCCcEEEEecccC--
Confidence            45778888762   44455566667789888887521                   1111222234578899998776  


Q ss_pred             EEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEe-cCCCeE
Q 023643          106 LLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSA-AGDSCA  183 (279)
Q Consensus       106 ~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i  183 (279)
                      ++. +-...+..+|+............. ....                      .....+++++.++.|+.+ ...+.|
T Consensus       135 ~ly~t~~~~~~~~I~r~~~dG~~~~~i~-~~~~----------------------~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         135 NLYWTDWNRDNPKIETSHMDGTNRRILA-QDNL----------------------GLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             EEEEEECCSSSCEEEEEETTSCCCEEEE-CTTC----------------------SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cEEEeecCCCCcEEEEecCCCCCceeee-eecc----------------------cccceEEEeecCcEEEEEeCCCCEE
Confidence            444 332223334554321111111111 0000                      124789999887777655 467889


Q ss_pred             EEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEec
Q 023643          184 YCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  240 (279)
                      ...|+........+.+-. ....|++. .+....+-...+.|...|..+++.+..+.
T Consensus       192 ~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         192 ECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            999987554444444333 34678876 45555666678889999999998887774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.54  E-value=0.0058  Score=46.27  Aligned_cols=40  Identities=13%  Similarity=-0.063  Sum_probs=29.9

Q ss_pred             eEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCC
Q 023643          182 CAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSED  222 (279)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  222 (279)
                      .+.+.|..+.+...+..- .+.+..++++++|+++++.+.+
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEecc
Confidence            467789988887776653 3346678999999998887643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.0083  Score=42.76  Aligned_cols=170  Identities=11%  Similarity=0.096  Sum_probs=98.3

Q ss_pred             eeecccceEEEEECCCCCCCCCEE-EEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEec
Q 023643           21 REILTRTVFRTVWGPSKDGSPDTI-VIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFY   99 (279)
Q Consensus        21 ~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   99 (279)
                      +..+...+.+++|.+    ..+.| .+-..++.|+..+++..                   .....+......+.++++.
T Consensus        31 ~~~~~~~~~~ld~D~----~~~~iywsd~~~~~I~~~~l~g~-------------------~~~~v~~~~~~~p~~iAvD   87 (263)
T d1npea_          31 LHIPAKVIIGLAFDC----VDKVVYWTDISEPSIGRASLHGG-------------------EPTTIIRQDLGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEEEEEEEET----TTTEEEEEETTTTEEEEEESSSC-------------------CCEEEECTTCCCEEEEEEE
T ss_pred             cccCCCcEEEEEEEe----CCCEEEEEECCCCeEEEEEcccC-------------------CcEEEEEeccccccEEEEe
Confidence            334455688899998    45544 44456778888888752                   1122222223457788887


Q ss_pred             CCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecC
Q 023643          100 GGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAG  179 (279)
Q Consensus       100 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  179 (279)
                      .-+. ++..+-...+.|.+.+++... .....  .. ..                     .....++++|...+++....
T Consensus        88 ~~~~-~lY~~d~~~~~I~~~~~dg~~-~~~l~--~~-~l---------------------~~p~~l~vdp~~g~ly~t~~  141 (263)
T d1npea_          88 HLGR-TIFWTDSQLDRIEVAKMDGTQ-RRVLF--DT-GL---------------------VNPRGIVTDPVRGNLYWTDW  141 (263)
T ss_dssp             TTTT-EEEEEETTTTEEEEEETTSCS-CEEEE--CS-SC---------------------SSEEEEEEETTTTEEEEEEC
T ss_pred             ccCC-eEEEeccCCCEEEEEecCCce-EEEEe--cc-cc---------------------cCCcEEEEecccCcEEEeec
Confidence            6555 244455667789988875321 11111  11 00                     02478899997777665432


Q ss_pred             ---CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCCeEEEEeCCCCceEEEe
Q 023643          180 ---DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDGTARIWDCKSGKCIKVI  239 (279)
Q Consensus       180 ---d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~  239 (279)
                         ...|..-++............-.....+++++.++.| .+-...+.|...++........+
T Consensus       142 ~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~  205 (263)
T d1npea_         142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL  205 (263)
T ss_dssp             CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred             CCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE
Confidence               2335555665433333333333567899998876655 55467888999998654443333

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.0095  Score=42.73  Aligned_cols=184  Identities=12%  Similarity=0.158  Sum_probs=105.5

Q ss_pred             Cceeeeccccccccceeeeeec----ccceEEEEECCCCCCCCCEEEEec-------CCCcEEEEeCCCCCcccccccCC
Q 023643            3 GDSTNWDEDAYRKSILKEREIL----TRTVFRTVWGPSKDGSPDTIVIAS-------SDGSITSYSIPSCISKLPLGLSN   71 (279)
Q Consensus         3 G~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~   71 (279)
                      ..|.-|++++.. ...+.+.-|    ...|..-..++    +.++++..+       -.|.+.+|..+.           
T Consensus       122 taVYHW~~~g~s-~P~k~fdR~~~L~~~QIInY~~d~----~~kW~~l~GI~~~~~~i~G~mQLYS~er-----------  185 (327)
T d1utca2         122 NAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDA----KQKWLLLTGISAQQNRVVGAMQLYSVDR-----------  185 (327)
T ss_dssp             SEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECT----TSCEEEEEEEEEETTEEEEEEEEEETTT-----------
T ss_pred             CceEEEcccCCC-CchhhhhhcccccCceEEEEEECC----CCCEEEEEeEecCCCceeEEEEEEEecc-----------
Confidence            456778886543 334444333    35677777788    788776532       236788999885           


Q ss_pred             cccceeeeccccccccCCccCeEEEEecCCCC-ceEEEEeeC---CCcEEEeecCCCccCcceeeeccCcccceEEee-c
Q 023643           72 SKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNE-DALLLSCGD---DGRICGWRWKEFTESKVPINLQGNHVKPVLDLV-N  146 (279)
Q Consensus        72 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~  146 (279)
                               +..+.+.+|.+.-..+....+.. ..+|+.+.+   .+.+.|-++...........     .+ ..++. .
T Consensus       186 ---------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~-----kk-~vdi~fp  250 (327)
T d1utca2         186 ---------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----KK-AVDVFFP  250 (327)
T ss_dssp             ---------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC-----CE-EEECCCC
T ss_pred             ---------CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc-----ce-eEEEECC
Confidence                     33455667765544444432211 123333322   25677777654222111100     01 11111 1


Q ss_pred             CCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeE
Q 023643          147 HQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTA  225 (279)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  225 (279)
                      ++-..        .-..++..++....++..+.-|.|++||+.++.++..-+-....|...+-+....-++....+|.|
T Consensus       251 pea~~--------DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         251 PEAQN--------DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             TTCTT--------CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             ccccC--------CcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence            11111        123578889888899999999999999999999998877667777655555544444444456654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.39  E-value=0.012  Score=44.57  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=67.1

Q ss_pred             ceeEEEcCCCCeEEEec-CCCeEEEEecCCCc------------EEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEE
Q 023643          162 NNAIAVDPQGGAIFSAA-GDSCAYCWDVESSR------------IKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIW  228 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  228 (279)
                      ...+.++|||+++++++ .+.++.++|++.-.            ...+.+ ..-.....+|+..|+-..+--.|..|.-|
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCceEEEEeeccceEEEE
Confidence            46789999999887655 58899999996321            111222 12234667899888877788899999999


Q ss_pred             eCCCC----------ceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEc
Q 023643          229 DCKSG----------KCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVR  270 (279)
Q Consensus       229 d~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  270 (279)
                      ++...          ..+..+..+-+   .+|.....+-...|+|++|++..
T Consensus       356 ~~~~~~~~~~~~~~~~v~~k~~v~y~---~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         356 NIEDAIRAYAGEKVDPIKDKLDVHYQ---PGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSC---EEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ecchhhhhhccccCCcceeccccccC---CCCCccCcCCcCCCCCCEEEEec
Confidence            98432          34455543321   24433222234567888888764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.30  E-value=0.0058  Score=49.09  Aligned_cols=81  Identities=25%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             CCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEE
Q 023643          180 DSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITL  259 (279)
Q Consensus       180 d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  259 (279)
                      .|.|.-+|+.+++.+.+...+. ++..-..+..+.++++|+.||.++.+|.++|+.+..++...    ..+..+   +.|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~----~~~~~P---~ty  536 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS----GIVSPP---ITW  536 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCC---EEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC----CccccC---EEE
Confidence            4789999999999998876433 22211233457788889999999999999999999986543    223333   456


Q ss_pred             cCCCC-EEEE
Q 023643          260 DASES-WLVR  268 (279)
Q Consensus       260 ~~~~~-~l~~  268 (279)
                      ..+|+ |++.
T Consensus       537 ~~~G~qYv~i  546 (582)
T d1flga_         537 EQDGEQYLGV  546 (582)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            66785 4443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.023  Score=40.44  Aligned_cols=185  Identities=12%  Similarity=-0.004  Sum_probs=101.4

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEE-EecCCCcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIV-IASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      .|+-.++++.....   +......+.+++|.+    ..+.|. +=...+.|..-+++.....               ...
T Consensus        11 ~I~~~~l~~~~~~~---~~~~~~~~~~id~d~----~~~~lYw~D~~~~~I~~~~l~~~~~~---------------~~~   68 (266)
T d1ijqa1          11 EVRKMTLDRSEYTS---LIPNLRNVVALDTEV----ASNRIYWSDLSQRMICSTQLDRAHGV---------------SSY   68 (266)
T ss_dssp             SEEEEETTSCCCEE---EECSCSSEEEEEEET----TTTEEEEEETTTTEEEEEEC-----------------------C
T ss_pred             eEEEEECCCCccee---eeCCCCceEEEEEEe----CCCEEEEEECCCCEEEEEEecCCCCC---------------cce
Confidence            46666776654322   223445678999998    555554 4445667776666532100               001


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      ...+......+.+|++.+.+. ++..+-...+.|.+.+++...   ..........                      ..
T Consensus        69 ~~~~~~~~~~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~---~~~~~~~~~~----------------------~P  122 (266)
T d1ijqa1          69 DTVISRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVK---RKTLFRENGS----------------------KP  122 (266)
T ss_dssp             EEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSS---EEEEEECTTC----------------------CE
T ss_pred             EEEEeCCCCCcceEEEeeccc-eEEEEecCCCEEEeEecCCce---EEEEEcCCCC----------------------Cc
Confidence            111122233456777776555 255555667789999875321   1111111100                      14


Q ss_pred             eeEEEcCCCCeEEEec--CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEE-EecCCCeEEEEeCCCCceE
Q 023643          163 NAIAVDPQGGAIFSAA--GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIV-TGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~  236 (279)
                      ..++++|...+|+...  ..+.|...++............-.....+++++.++.|. +-...+.|...++......
T Consensus       123 ~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~  199 (266)
T d1ijqa1         123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (266)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence            6889998766665543  345677777764433333333345678999998766544 4467788999998654433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.026  Score=40.46  Aligned_cols=216  Identities=14%  Similarity=0.174  Sum_probs=117.6

Q ss_pred             ceeeeccccccccceeeeeecccceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeecccc
Q 023643            4 DSTNWDEDAYRKSILKEREILTRTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPD   83 (279)
Q Consensus         4 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (279)
                      ++.++|++.+++  ++... ..++|.-=.|-.     .+.|+..+.. .|.-|+++..                  ..|.
T Consensus        84 ~LQiFnletK~k--lks~~-~~e~VvfWkWis-----~~~L~lVT~t-aVYHW~~~g~------------------s~P~  136 (327)
T d1utca2          84 TLQIFNIEMKSK--MKAHT-MTDDVTFWKWIS-----LNTVALVTDN-AVYHWSMEGE------------------SQPV  136 (327)
T ss_dssp             EEEEEETTTTEE--EEEEE-CSSCCCEEEESS-----SSEEEEECSS-EEEEEESSSS------------------CCCE
T ss_pred             eEEEEehhHhhh--hceEE-cCCCcEEEEecC-----CCEEEEEcCC-ceEEEcccCC------------------CCch
Confidence            467777777643  44443 235666666654     3555555443 6888887542                  1233


Q ss_pred             ccccCC----ccCeEEEEecCCCCceEEEEee-------CCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCc
Q 023643           84 GFLHGH----DGPAYDVKFYGGNEDALLLSCG-------DDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGP  152 (279)
Q Consensus        84 ~~~~~h----~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (279)
                      +.+..|    ...|.....+++.+  .++..|       -.|.+.+|..+.    +....+.+ |...+..+..++...+
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~k--W~~l~GI~~~~~~i~G~mQLYS~er----~~sQ~ieG-haa~F~~~~~~g~~~~  209 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQK--WLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIEG-HAASFAQFKMEGNAEE  209 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSC--EEEEEEEEEETTEEEEEEEEEETTT----TEEEEECC-SEEEEEEECCTTCSSC
T ss_pred             hhhhhcccccCceEEEEEECCCCC--EEEEEeEecCCCceeEEEEEEEecc----CcCccccc-eeeeeEEEEcCCCCCC
Confidence            333333    23466667777776  544322       246778888653    23333333 4444444333322221


Q ss_pred             cccCCCCCCceeEEEcCCCCeEEEecCCCeEEEEecCCCc---E------EEEee---cCCcceEEEEEcCCCcEEEEec
Q 023643          153 WGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSR---I------KMVFK---GHSDYLHCIVARNSTNQIVTGS  220 (279)
Q Consensus       153 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~------~~~~~---~~~~~i~~i~~~~~~~~l~~~~  220 (279)
                      .       .+.|++.-        +...+++++.++....   +      +..+-   ...+-..+|..++.-..+..-+
T Consensus       210 ~-------~lf~fa~r--------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT  274 (327)
T d1utca2         210 S-------TLFCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  274 (327)
T ss_dssp             E-------EEEEEEEE--------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred             c-------eEEEEEEC--------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe
Confidence            0       12222221        2334788998886521   1      11111   1234567888888777888888


Q ss_pred             CCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEE
Q 023643          221 EDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVI  276 (279)
Q Consensus       221 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  276 (279)
                      .-|.|.+||+.++.++..-+        -....|...+-+.+..=+++-..+|.|.
T Consensus       275 K~G~i~lyDleTgt~i~~nR--------Is~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         275 KYGYIHLYDLETGTCIYMNR--------ISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCcEEEEEEcccccEEEEee--------cCCCceEEeccCCCCceEEEECCCCeEE
Confidence            99999999999999988763        2233444344444433455555666653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.01  E-value=0.035  Score=41.04  Aligned_cols=70  Identities=9%  Similarity=0.044  Sum_probs=44.9

Q ss_pred             ceeEEEcCCCCeEEEec-----------------CCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEE-EEecCCC
Q 023643          162 NNAIAVDPQGGAIFSAA-----------------GDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQI-VTGSEDG  223 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~  223 (279)
                      .+.+++..++..++|-.                 .-+.+..||.  ++...... .-.....|+++|++++| ++-+..+
T Consensus       152 pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~  228 (340)
T d1v04a_         152 VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE-GFDFANGINISPDGKYVYIAELLAH  228 (340)
T ss_dssp             EEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             ccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEcC-CCCccceeEECCCCCEEEEEeCCCC
Confidence            47888888887777732                 1234444554  33322222 33457899999998765 5566788


Q ss_pred             eEEEEeCCCCc
Q 023643          224 TARIWDCKSGK  234 (279)
Q Consensus       224 ~i~vwd~~~~~  234 (279)
                      .|++|++....
T Consensus       229 ~i~~y~~~~~~  239 (340)
T d1v04a_         229 KIHVYEKHANW  239 (340)
T ss_dssp             EEEEEEECTTS
T ss_pred             eEEEEEeCCCc
Confidence            99999987543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.044  Score=38.94  Aligned_cols=157  Identities=12%  Similarity=0.039  Sum_probs=87.1

Q ss_pred             CccCeEEEEecCCCCceEEE-EeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEE
Q 023643           89 HDGPAYDVKFYGGNEDALLL-SCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAV  167 (279)
Q Consensus        89 h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  167 (279)
                      ....+.++.|.+..+  .|. +-...+.|.--+++...............                     ...+..+++
T Consensus        28 ~~~~~~~id~d~~~~--~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~---------------------~~~p~glAv   84 (266)
T d1ijqa1          28 NLRNVVALDTEVASN--RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------------IQAPDGLAV   84 (266)
T ss_dssp             SCSSEEEEEEETTTT--EEEEEETTTTEEEEEEC--------CEEEECSS---------------------CSCCCEEEE
T ss_pred             CCCceEEEEEEeCCC--EEEEEECCCCEEEEEEecCCCCCcceEEEEeCC---------------------CCCcceEEE
Confidence            344577899998776  444 43456667666654211111000000000                     012468899


Q ss_pred             cCCCCeEEEe-cCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEe--cCCCeEEEEeCCCCceEEEecCCcc
Q 023643          168 DPQGGAIFSA-AGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTG--SEDGTARIWDCKSGKCIKVIDPVKD  244 (279)
Q Consensus       168 ~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~  244 (279)
                      .+.+..|+.+ ...+.|.+.++........+.........++++|...+|...  +..+.|.-.++.........     
T Consensus        85 D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~-----  159 (266)
T d1ijqa1          85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----  159 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----
T ss_pred             eeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc-----
Confidence            8766656554 456789999998666555555556678999999965554433  23456766666443333322     


Q ss_pred             ccccCcceeeeEEEEcCCCCEEEEE-cCcceEE
Q 023643          245 KQLKGVISCVSCITLDASESWLVRV-RATNYVI  276 (279)
Q Consensus       245 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~  276 (279)
                         ...-....++++++.+..|.-+ ...+.|.
T Consensus       160 ---~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~  189 (266)
T d1ijqa1         160 ---TENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (266)
T ss_dssp             ---CSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ---ccccceeeEEEeeccccEEEEecCCcCEEE
Confidence               1222345778888876655544 4445544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.80  E-value=0.082  Score=42.01  Aligned_cols=61  Identities=10%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      |.|.-+|+.+++.+-+.... .+...-.+.-.+.++++|+.||.++.+|.++|+.+..++..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            67888999999988876532 12111122334678889999999999999999999988654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.70  E-value=0.07  Score=39.82  Aligned_cols=154  Identities=11%  Similarity=0.082  Sum_probs=86.8

Q ss_pred             CCCEEEEecCCC-----------cEEEEeCCCCCcccccccCCcccceeeeccccccc-cCCccCeEEEEecCCCCceEE
Q 023643           40 SPDTIVIASSDG-----------SITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFL-HGHDGPAYDVKFYGGNEDALL  107 (279)
Q Consensus        40 ~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l  107 (279)
                      +++.++.|+.+.           .+.+||+.+..                 ......+ ..|........+.+++.  ++
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----------------w~~~~~~~~~~~~~~~~~~~~~~g~--i~   90 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----------------VSDRTVTVTKHDMFCPGISMDGNGQ--IV   90 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----------------BCCCEEEECSCCCSSCEEEECTTSC--EE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCc-----------------EeecCCCCCCcccceeEEEEecCCc--EE
Confidence            788888877431           26789988742                 1111111 12333344567888887  88


Q ss_pred             EEeeCC-CcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCC------
Q 023643          108 LSCGDD-GRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGD------  180 (279)
Q Consensus       108 ~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------  180 (279)
                      +.|+.+ ..+.+||..+..-.. ...+...                       ..-.+.+..++++.++.|+.+      
T Consensus        91 v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-----------------------r~~~~~~~~~dG~v~v~GG~~~~~~~~  146 (387)
T d1k3ia3          91 VTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-----------------------RGYQSSATMSDGRVFTIGGSWSGGVFE  146 (387)
T ss_dssp             EECSSSTTCEEEEEGGGTEEEE-CCCCSSC-----------------------CSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             EeecCCCcceeEecCccCcccc-ccccccc-----------------------ccccceeeecCCceeeecccccccccc
Confidence            887655 588999976431100 0000000                       012356677889888887643      


Q ss_pred             CeEEEEecCCCcEEEEe--e-------cCCc-----ceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceE
Q 023643          181 SCAYCWDVESSRIKMVF--K-------GHSD-----YLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCI  236 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~--~-------~~~~-----~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  236 (279)
                      ..+.+||..+.+-...-  .       .+..     .-..+...++++.++.+..++.+.+++..+....
T Consensus       147 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         147 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             ceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            36899999876433211  0       0000     0111223356778888888888888888776543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.58  E-value=0.086  Score=39.33  Aligned_cols=95  Identities=11%  Similarity=-0.031  Sum_probs=55.7

Q ss_pred             eeeeccccccccceeeee-ecccceEEEEECCCCCCCCCEEEEecCC-CcEEEEeCCCCCcccccccCCcccceeeeccc
Q 023643            5 STNWDEDAYRKSILKERE-ILTRTVFRTVWGPSKDGSPDTIVIASSD-GSITSYSIPSCISKLPLGLSNSKVQQLLGIEP   82 (279)
Q Consensus         5 v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (279)
                      +.+||+.+.......... .+.....+.++.+    ++.+++.|+.+ ..+.+||..+..                 ...
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~i~v~Gg~~~~~~~~yd~~~~~-----------------w~~  112 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDS-----------------WIP  112 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSSSTTCEEEEEGGGTE-----------------EEE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEec----CCcEEEeecCCCcceeEecCccCc-----------------ccc
Confidence            457887766543322221 2222334567888    89999998755 589999988642                 122


Q ss_pred             cccccCCccCeEEEEecCCCCceEEEEeeCC------CcEEEeecCC
Q 023643           83 DGFLHGHDGPAYDVKFYGGNEDALLLSCGDD------GRICGWRWKE  123 (279)
Q Consensus        83 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~  123 (279)
                      ...+..... -...+..++++  +++.++.+      ..+.+||+.+
T Consensus       113 ~~~~~~~r~-~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         113 GPDMQVARG-YQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             CCCCSSCCS-SCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccccc-ccceeeecCCc--eeeeccccccccccceeeeecCCC
Confidence            222222221 23456677887  78877653      3578888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.50  E-value=0.14  Score=40.78  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCC
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPV  242 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  242 (279)
                      |.+.-||+.+++.+-+.+... +...=..+-.+.++++|+.||.++.+|.++|+.+..++..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            468888999998888776432 1111112235788889999999999999999999988654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.42  E-value=0.068  Score=42.81  Aligned_cols=80  Identities=8%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      |.|.-||+.+++.+-..... .+...=.++..+.+++.|+.||.++.+|.++|+.+.+++...    ..+..+++   |.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~----~~~a~P~t---Y~  524 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS----GAIGYPMT---YT  524 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEE---EE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC----CcccCCeE---EE
Confidence            57888999999887765422 222111223357788889999999999999999999986543    23333443   44


Q ss_pred             CCCC-EEEE
Q 023643          261 ASES-WLVR  268 (279)
Q Consensus       261 ~~~~-~l~~  268 (279)
                      .+|+ |++.
T Consensus       525 ~dGkQYvav  533 (596)
T d1w6sa_         525 HKGTQYVAI  533 (596)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            4675 4443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.18  E-value=0.15  Score=37.70  Aligned_cols=130  Identities=11%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             CeEEEEe--cCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcC
Q 023643           92 PAYDVKF--YGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDP  169 (279)
Q Consensus        92 ~v~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  169 (279)
                      .+..+|+  +|.....+++....+|.+..|.+..........       ..+..+...            ..+..+.++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~-------~lvr~f~~~------------~q~EGCVvDd  189 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG-------KKVRAFKMN------------SQTEGMAADD  189 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE-------EEEEEEECS------------SCEEEEEEET
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee-------EeeeccCCC------------CccceEEEeC
Confidence            4667777  554332367777889999999875332211111       111111111            1367899999


Q ss_pred             CCCeEEEecCCCeEEEEecCC-----CcEEEEeec--CCcceEEEEEcC----CCcEEEEecCCCeEEEEeCCCC-ceEE
Q 023643          170 QGGAIFSAAGDSCAYCWDVES-----SRIKMVFKG--HSDYLHCIVARN----STNQIVTGSEDGTARIWDCKSG-KCIK  237 (279)
Q Consensus       170 ~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~--~~~~i~~i~~~~----~~~~l~~~~~d~~i~vwd~~~~-~~~~  237 (279)
                      ....|+.+-.+.-|..++..-     ...+-...+  ...-+-.|+.-.    +|.+|+|.-.+++..|||.... +.+.
T Consensus       190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g  269 (353)
T d1h6la_         190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA  269 (353)
T ss_dssp             TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence            889999998887776666541     222222222  234566666432    3455666667899999998763 5665


Q ss_pred             Eec
Q 023643          238 VID  240 (279)
Q Consensus       238 ~~~  240 (279)
                      .+.
T Consensus       270 ~F~  272 (353)
T d1h6la_         270 DFQ  272 (353)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            553

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.92  E-value=0.29  Score=38.88  Aligned_cols=80  Identities=14%  Similarity=0.048  Sum_probs=51.7

Q ss_pred             CeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEc
Q 023643          181 SCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLD  260 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  260 (279)
                      |.|.-+|+.+++.+-+..... +..+-.....+.++++|+.||.++.+|.++|+.+.+++...    .....+   +.|.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~----~~~a~P---~ty~  515 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS----GGIGSP---MTYS  515 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCC---EEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC----Cceecc---eEEE
Confidence            568888989988887665221 11111122246788889999999999999999998886432    222233   3455


Q ss_pred             CCCC-EEEE
Q 023643          261 ASES-WLVR  268 (279)
Q Consensus       261 ~~~~-~l~~  268 (279)
                      .+|+ |+++
T Consensus       516 ~dGkqYi~v  524 (571)
T d2ad6a1         516 FKGKQYIGS  524 (571)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            5775 4543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.64  E-value=0.086  Score=40.28  Aligned_cols=99  Identities=6%  Similarity=-0.006  Sum_probs=61.7

Q ss_pred             eeEEEcCCCCeEEEe-----cCCCeEEEEecCCCcEEE-EeecCCcceEEEEEcCCCcEEEEecCC--------------
Q 023643          163 NAIAVDPQGGAIFSA-----AGDSCAYCWDVESSRIKM-VFKGHSDYLHCIVARNSTNQIVTGSED--------------  222 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d--------------  222 (279)
                      ..++++|++++++.+     +.-..|+++|+.+++.+. .+.  ......++|.++++.|+-...+              
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            456789999987643     223469999999998765 222  1222468899998877643322              


Q ss_pred             --CeEEEEeCCCCceE--EEecCCccccccCcceeeeEEEEcCCCCEEEEE
Q 023643          223 --GTARIWDCKSGKCI--KVIDPVKDKQLKGVISCVSCITLDASESWLVRV  269 (279)
Q Consensus       223 --~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  269 (279)
                        ..|..+.+.+....  ..+..      ......+..+..++++++++..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e------~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEF------PDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECC------TTCTTCEEEEEECTTSCEEEEE
T ss_pred             CcceEEEEECCCCcccccccccc------ccCCceEEeeeccCCcceeeEE
Confidence              25777777665332  22221      1223346677789999987643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.62  E-value=0.42  Score=36.62  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=37.9

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEEee--------cCCcceEEEEEcCC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFK--------GHSDYLHCIVARNS  212 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~i~~i~~~~~  212 (279)
                      .++|+|.|++++|++--..|.|++++..+++......        .-+.....|+++|+
T Consensus        29 P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             ceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4799999999988877667999999987765433221        12356789999995

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.88  Score=33.79  Aligned_cols=155  Identities=8%  Similarity=0.042  Sum_probs=89.5

Q ss_pred             cCeEEEEecCCCCceEEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCC
Q 023643           91 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQ  170 (279)
Q Consensus        91 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (279)
                      ....-++.++...  +++.|+.++ +.|-.+........... ......+..               ....|..++|+.+
T Consensus        37 ~~~~LLAVsn~~G--Ll~aa~~~~-l~V~~t~~l~~~~~~~~-~~~~~~~~~---------------~ip~v~~vafs~d   97 (381)
T d1xipa_          37 ASLQNLDISNSKS--LFVAASGSK-AVVGELQLLRDHITSDS-TPLTFKWEK---------------EIPDVIFVCFHGD   97 (381)
T ss_dssp             SCCBCEEEETTTT--EEEEEETTE-EEEEEHHHHHHHHHSSS-CCCCCSEEE---------------ECTTEEEEEEETT
T ss_pred             cccceEEEeCCCC--EEEEECCCE-EEEEEHHHHHHHhhccC-CCCcceecc---------------CCCCeEEEEeeCC
Confidence            3455677887766  888888775 66766533211000000 000000000               0113788899755


Q ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCc
Q 023643          171 GGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGV  250 (279)
Q Consensus       171 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  250 (279)
                        .+++.. ++.+..++..+-........-..++..+.+.|.  .++....++.+.++++..++...........   .-
T Consensus        98 --~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~---~~  169 (381)
T d1xipa_          98 --QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSF---DV  169 (381)
T ss_dssp             --EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEE---EE
T ss_pred             --EEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceE---Ee
Confidence              455543 567888887765444444434566788887764  4556667899999999888654432111100   11


Q ss_pred             ceeeeEEEEcCCCCEEEEEcCc
Q 023643          251 ISCVSCITLDASESWLVRVRAT  272 (279)
Q Consensus       251 ~~~v~~~~~~~~~~~l~~~~~d  272 (279)
                      ...+.+++|++.|..++++..+
T Consensus       170 ~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         170 TNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             CSSEEEEEETTSCEEEEEEETT
T ss_pred             cCCceEEEEeCCcEEEEEeCCC
Confidence            2457889999999988887543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.77  Score=32.20  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=26.9

Q ss_pred             CeEEEEecCCCcEEEEeecCC-cceEEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceEE
Q 023643          181 SCAYCWDVESSRIKMVFKGHS-DYLHCIVARNSTNQIVTGSED-----GTARIWDCKSGKCIK  237 (279)
Q Consensus       181 ~~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~  237 (279)
                      ..+..||..+.+....-.... ..-.++.. ..++.++.|+.+     .....+|..+.+...
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             ceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeec
Confidence            457888887654332211111 11112222 235566666544     346777877665443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.50  E-value=1.3  Score=34.88  Aligned_cols=24  Identities=8%  Similarity=0.158  Sum_probs=20.0

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEE
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMV  196 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~  196 (279)
                      .++.++.+|.+.++|..+++++..
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceeeccccceEEEEecCCCcEeee
Confidence            467788899999999999988754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.92  E-value=1.2  Score=32.55  Aligned_cols=158  Identities=11%  Similarity=0.123  Sum_probs=83.1

Q ss_pred             eEEEEecCCCCceEEEEeeC------------CCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCC
Q 023643           93 AYDVKFYGGNEDALLLSCGD------------DGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVP  160 (279)
Q Consensus        93 v~~~~~~~~~~~~~l~s~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (279)
                      ...|...|++.  .+++++.            .|.|.++|++............+.....       ..      +    
T Consensus        37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~-------~~------f----   97 (340)
T d1v04a_          37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDI-------SS------F----   97 (340)
T ss_dssp             CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCG-------GG------C----
T ss_pred             cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCC-------cc------e----
Confidence            44677888875  5555432            3888888886543332222222211000       00      0    


Q ss_pred             CceeEE--EcCCCC-eEEEec---CCCeEEEEecCCCc--EE--EEeec-CCcceEEEEEcCCCcEEEEecC--------
Q 023643          161 ENNAIA--VDPQGG-AIFSAA---GDSCAYCWDVESSR--IK--MVFKG-HSDYLHCIVARNSTNQIVTGSE--------  221 (279)
Q Consensus       161 ~i~~~~--~~~~~~-~l~~~~---~d~~i~i~d~~~~~--~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~--------  221 (279)
                      ....+.  -.+++. +|++..   ...+|-+|++....  ..  ..+.. .......+++..++.+++|-..        
T Consensus        98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~  177 (340)
T d1v04a_          98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  177 (340)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHH
T ss_pred             eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhh
Confidence            012333  245555 455543   35678888875432  22  22221 2245788888888988888321        


Q ss_pred             -------CCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEE-cCcceEEeC
Q 023643          222 -------DGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRV-RATNYVILF  278 (279)
Q Consensus       222 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  278 (279)
                             -+.-.+|....++.....         ..-..-+.++++||+++|+.+ +..+.|+.|
T Consensus       178 ~~e~~~~~~~g~v~~~~~~~~~~~~---------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y  233 (340)
T d1v04a_         178 SWEMHLGLAWSFVTYYSPNDVRVVA---------EGFDFANGINISPDGKYVYIAELLAHKIHVY  233 (340)
T ss_dssp             HHHHHTTCCCEEEEEECSSCEEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             hhhHhhcCCceeEEEEcCCceEEEc---------CCCCccceeEECCCCCEEEEEeCCCCeEEEE
Confidence                   122334433333322222         222356889999999877655 556777765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.85  E-value=0.47  Score=37.60  Aligned_cols=25  Identities=12%  Similarity=0.166  Sum_probs=20.8

Q ss_pred             eEEEecCCCeEEEEecCCCcEEEEe
Q 023643          173 AIFSAAGDSCAYCWDVESSRIKMVF  197 (279)
Q Consensus       173 ~l~~~~~d~~i~i~d~~~~~~~~~~  197 (279)
                      .++.++.+|.+.++|..+++.+...
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~  353 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAK  353 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeeeccccceeEEeccccccccccc
Confidence            5677888999999999999887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.18  E-value=0.42  Score=37.77  Aligned_cols=48  Identities=17%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             CeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCCCCEEEEEcCcceEEeCC
Q 023643          223 GTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLVRVRATNYVILFS  279 (279)
Q Consensus       223 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  279 (279)
                      |.|.-||+.+++.+..+....         +..+-.+.-.+.++++|+.||.++.+|
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~---------~~~gg~l~TagglVF~G~~dg~l~A~D  485 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT---------HWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---------SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC---------CCCCceeEECCCEEEEECCCCcEEEEE
Confidence            568888999998887764221         111111222466777889999988775

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.17  E-value=1.5  Score=32.07  Aligned_cols=114  Identities=10%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             ceeEEE--cCCC-C-eEEEecCCCeEEEEecC---CC----cEEEEeecCCcceEEEEEcCCCcEEEEecCCCeEEEEeC
Q 023643          162 NNAIAV--DPQG-G-AIFSAAGDSCAYCWDVE---SS----RIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDC  230 (279)
Q Consensus       162 i~~~~~--~~~~-~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  230 (279)
                      +..+++  ++.. . ++++...+|.+..|.+.   .+    +.++.|.. ...+..|.+.+....|..+-++.-|..++.
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            455555  6654 3 45667778999888763   22    45566653 456788899988888888877776666655


Q ss_pred             CC--CceEEEecCCccccccCcceeeeEEEEcC--C--CCEEEEEcCcceEEeCC
Q 023643          231 KS--GKCIKVIDPVKDKQLKGVISCVSCITLDA--S--ESWLVRVRATNYVILFS  279 (279)
Q Consensus       231 ~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~~~l~~~~~d~~i~~wd  279 (279)
                      .-  ......+.....   ......+..++.-.  +  |-+|++.-.+++..+||
T Consensus       209 ~~~~~~~~~~i~~~~g---~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         209 EPDGGSNGTVIDRADG---RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             STTSCSCCEEEEECSS---SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             ccCCCccceeeecccC---ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            31  221111111000   12344566666432  2  33444555577777774

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.11  E-value=0.73  Score=35.23  Aligned_cols=62  Identities=10%  Similarity=-0.005  Sum_probs=42.0

Q ss_pred             CcceEEEEEcCCCcEEEEecCCCeEEEEeCCCCceEEEecCCccccccCcceeeeEEEEcCC
Q 023643          201 SDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDAS  262 (279)
Q Consensus       201 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  262 (279)
                      -...++|+|.|+++++++--..|.|++++..+++...............-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34668999999999998876689999999877765443322111111122356788999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.81  E-value=1.9  Score=32.45  Aligned_cols=103  Identities=11%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             CCccCeEEEEecCCCCceEEE-EeeCCC----cEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCc
Q 023643           88 GHDGPAYDVKFYGGNEDALLL-SCGDDG----RICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPEN  162 (279)
Q Consensus        88 ~h~~~v~~~~~~~~~~~~~l~-s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  162 (279)
                      ++.-.+...+++|+++  +++ +-+.+|    .|+++|+.++....  ..+...                        ..
T Consensus       122 ~~~~~~~~~~~Spd~~--~la~s~d~~G~e~~~l~v~Dl~tg~~~~--~~i~~~------------------------~~  173 (430)
T d1qfma1         122 DGTVALRGYAFSEDGE--YFAYGLSASGSDWVTIKFMKVDGAKELP--DVLERV------------------------KF  173 (430)
T ss_dssp             SSCEEEEEEEECTTSS--EEEEEEEETTCSCEEEEEEETTTTEEEE--EEEEEE------------------------CS
T ss_pred             cccceecceEecCCCC--EEEEEeccccCchheeEEeccCcceecc--cccccc------------------------cc
Confidence            3444456678899998  554 444444    68899987642111  111100                        02


Q ss_pred             eeEEEcCCCCeEEEecCC----------------CeEEEEecCCC--cEEEEeecC--CcceEEEEEcCCCcEEEE
Q 023643          163 NAIAVDPQGGAIFSAAGD----------------SCAYCWDVESS--RIKMVFKGH--SDYLHCIVARNSTNQIVT  218 (279)
Q Consensus       163 ~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~--~~~~~~~~~--~~~i~~i~~~~~~~~l~~  218 (279)
                      ..++|.+++..|+-...+                ..|..+.+.+.  +.+..+...  ...+..+..++++++++.
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            467899999866543221                25777777664  223334433  334667778889988764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.32  E-value=1.4  Score=29.76  Aligned_cols=116  Identities=13%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             ceeEEEcCCCCeEEEecCCCeEEEEecCCCcEEEE--eec-------CCcceEEEEE-cCCCcEEEEecC-CCeEEEEeC
Q 023643          162 NNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMV--FKG-------HSDYLHCIVA-RNSTNQIVTGSE-DGTARIWDC  230 (279)
Q Consensus       162 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~-------~~~~i~~i~~-~~~~~~l~~~~~-d~~i~vwd~  230 (279)
                      |.+++.. +.+..++|+......+|-++.|+....  +.+       ....|..+-+ .+...-++++.. .|.++|++.
T Consensus       106 I~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tp  184 (313)
T d2hu7a1         106 ILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  184 (313)
T ss_dssp             EEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred             EEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecC
Confidence            5666664 345677888877788888877754432  111       1223444433 333334555555 777888776


Q ss_pred             CCCceEEE----------------------ecCCcc----cccc------CcceeeeEEEEcCCCCEEEEEcCcceEEeC
Q 023643          231 KSGKCIKV----------------------IDPVKD----KQLK------GVISCVSCITLDASESWLVRVRATNYVILF  278 (279)
Q Consensus       231 ~~~~~~~~----------------------~~~~~~----~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  278 (279)
                      ..|..-..                      +.....    ..+.      .....|+-+-+.|++++++.+-.||.-.+|
T Consensus       185 keGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF  264 (313)
T d2hu7a1         185 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVF  264 (313)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred             CCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchhee
Confidence            55432111                      111100    0011      112345666789999998888888877665

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.96  E-value=2.8  Score=31.05  Aligned_cols=147  Identities=9%  Similarity=0.007  Sum_probs=77.5

Q ss_pred             cceEEEEECCCCCCCCCEEEEecCCCcEEEEeCCCCCcccccccCCcccceeeeccccccccCCccCeEEEEecCCCCce
Q 023643           26 RTVFRTVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDA  105 (279)
Q Consensus        26 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  105 (279)
                      ....-++.++    ...++++|+.++ +.|-....-..  .+...... ..   .++...    -..|..++|+.+    
T Consensus        37 ~~~~LLAVsn----~~GLl~aa~~~~-l~V~~t~~l~~--~~~~~~~~-~~---~~~~~~----ip~v~~vafs~d----   97 (381)
T d1xipa_          37 ASLQNLDISN----SKSLFVAASGSK-AVVGELQLLRD--HITSDSTP-LT---FKWEKE----IPDVIFVCFHGD----   97 (381)
T ss_dssp             SCCBCEEEET----TTTEEEEEETTE-EEEEEHHHHHH--HHHSSSCC-CC---CSEEEE----CTTEEEEEEETT----
T ss_pred             cccceEEEeC----CCCEEEEECCCE-EEEEEHHHHHH--HhhccCCC-Cc---ceeccC----CCCeEEEEeeCC----
Confidence            4566677777    566777777774 56666432100  00000000 00   011111    125888999754    


Q ss_pred             EEEEeeCCCcEEEeecCCCccCcceeeeccCcccceEEeecCCCCCccccCCCCCCceeEEEcCCCCeEEEecCCCeEEE
Q 023643          106 LLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYC  185 (279)
Q Consensus       106 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  185 (279)
                      .|+.. .++.+..++............+.                         ..+..+.++|.  .++....++.+.+
T Consensus        98 ~l~v~-~~~~l~~~~~~~l~~~~~~~~~~-------------------------~~~~~~~~~p~--~~~l~~~~~~~~~  149 (381)
T d1xipa_          98 QVLVS-TRNALYSLDLEELSEFRTVTSFE-------------------------KPVFQLKNVNN--TLVILNSVNDLSA  149 (381)
T ss_dssp             EEEEE-ESSEEEEEESSSTTCEEEEEECS-------------------------SCEEEEEECSS--EEEEEETTSEEEE
T ss_pred             EEEEE-eCCCEEEEEeecccccccccccc-------------------------ccccceecCCc--eeEEEecCCCEEE
Confidence            44443 34567777764322111111110                         02466777764  5666667899999


Q ss_pred             EecCCCcEEEEeec-----CCcceEEEEEcCCCcEEEEe
Q 023643          186 WDVESSRIKMVFKG-----HSDYLHCIVARNSTNQIVTG  219 (279)
Q Consensus       186 ~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~  219 (279)
                      +++..++......+     -.+.+.+++|++.|..++++
T Consensus       150 ~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         150 LDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             EETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            99988754432211     23557777787777777766

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.56  E-value=2.1  Score=33.77  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             CCCCeEEEecCCCeEEEEecCCCcEEEEeecCCcc-eEEEEEcCCCc-EEEE
Q 023643          169 PQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDY-LHCIVARNSTN-QIVT  218 (279)
Q Consensus       169 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~-~l~~  218 (279)
                      ..+.++++|+.||.++-+|.++|+.+.+++..... -.-|.|..+|+ |++.
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            35678888999999999999999999988743221 11255666775 4443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.40  E-value=6.4  Score=31.06  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeecCCcce-EEEEEcC--CCcEEEEec------CCCeEEEEeCCCCceEEEec
Q 023643          172 GAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYL-HCIVARN--STNQIVTGS------EDGTARIWDCKSGKCIKVID  240 (279)
Q Consensus       172 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~--~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~  240 (279)
                      ..++.++.|+.|.-.|.++++++..+....... ..+.-.|  .+..++.+.      ..|.|+-+|.++|+.+.++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            468889999999999999999998875321110 1111122  144555554      35899999999999998765