Citrus Sinensis ID: 023649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MAAISTPICFSSLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccEEEEcccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEccHHHHHHHHHHHcccccccccccHHHHHHHcccccEEEEEEEEEEccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccEEEEEEEcccEEEEEEccccccccccEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEcccccccccEEcccccccHHHHHHHHccHHHHcccccccccccHHHHHHcccccccccccEccccccEcccccccccccccEEEEEcccccEEEEEEEEEEEEEEEEEcHHHHHHHHHHccccHHHHHccHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
maaistpicfsslvipcktwktnsshlflgkfaephaksfrnkpcsllsafsatriqphftvkasssssvgsaeyteepatkvkfqkslslpgyssplsllgtgyrEKVFAIIGVKVYAAGLYINQSILSKLnawkgkgaaniqedsslfdtiyqapseksLKIVLVRDVDGKTFWDALddaispririptpvdesaLSTFRSIFQGRNLMKGTFIfltwldpskmlvsisgdglpsgvdatiesenvTFALYDvffggapvspslKASVATGLATILK
Flexible Loop (DISEMBL)
maaistpicfssLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQPHftvkasssssvgsAEYTEEPatkvkfqkslslpgySSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWdalddaispririptpvdesALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Low Complexity Region (SEG)
MAAISTPICFSSLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQPHFTVKAsssssVGSAEYTEEPATKVKFQKslslpgyssplsllgTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Disordered region (IsUnstruct)
****STPICFSSLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQ************************************YSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSP*L*************
Disordered Region (DISOPRED)
********CFSSLVIPCKTWKTNSS*********************LLSAFSATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSIL******************SLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISP*****************S*****NLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Disordered Region (DISEMBL)
MAAISTPICFSSLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQPHF********************TKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Disordered Region (DISPRO)
***ISTPICFSSLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAISTPICFSSLVIPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFSATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q4AE12	237	Chalcone--flavonone isome	N/A	no	0.698	0.822	0.275	5e-12
Q53B75	226	Chalcone--flavonone isome	no	no	0.706	0.871	0.272	1e-11
Q3Y4F4	226	Chalcone--flavonone isome	N/A	no	0.709	0.876	0.274	2e-11
Q53B70	226	Chalcone--flavonone isome	no	no	0.706	0.871	0.262	3e-11
Q4AE11	237	Chalcone--flavonone isome	N/A	no	0.698	0.822	0.27	1e-10
A7ISP5	227	Chalcone--flavonone isome	no	no	0.706	0.867	0.261	1e-10
Q2PF16	222	Chalcone--flavonone isome	N/A	no	0.731	0.918	0.272	2e-10
Q9ZWR1	222	Chalcone--flavonone isome	no	no	0.738	0.927	0.283	6e-10
Q42663	237	Chalcone--flavonone isome	N/A	no	0.706	0.831	0.252	7e-10
Q53B74	226	Chalcone--flavonone isome	no	no	0.709	0.876	0.261	8e-10

>sp|Q4AE12|CFI2_FRAAN Chalcone--flavonone isomerase 2 OS=Fragaria ananassa GN=CHI2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 5/200 (2%)

Query: 85  FQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAANI 143
           F  ++  PG  + L L G G R        VK  A G+Y+    +  L+  WKGK A  +
Sbjct: 15  FPPAVKPPGSGNTLFLGGAGVRGMEIQGNFVKFTAIGVYLEDKAVPALSVKWKGKTAEEL 74

Query: 144 QEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPTPVDESALST 200
            E    F  I   P EK  ++ ++  + G+ + + + +   AI  +  I T  +  A+  
Sbjct: 75  TESVEFFREIVTGPFEKFTQVTMILPLTGQQYSEKVSENCVAIWKKFGIYTDAEAKAIEK 134

Query: 201 FRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFFGG 259
           F  +F+ +    G  I  T      +++ IS DG +P   +A IE++ ++ ++ +   G 
Sbjct: 135 FIEVFKDQTFPPGASILFTQSPNGSLMIGISKDGSIPEVGNAVIENKLLSESVLESIIGK 194

Query: 260 APVSPSLKASVATGLATILK 279
             VSP  + SVAT L+ +LK
Sbjct: 195 QGVSPEARKSVATRLSELLK 214

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.
Fragaria ananassa (taxid: 3747)
EC: 5EC: .EC: 5EC: .EC: 1EC: .EC: 6

>sp|Q53B75|CF1B1_SOYBN Chalcone--flavonone isomerase 1B-1 OS=Glycine max GN=CHI1B1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 5/202 (2%)

Query: 83  VKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAA 141
           ++F   ++ PG +    L G G R        VK    G+Y+    +S L A WKGK AA
Sbjct: 15  LQFPALVTPPGSTKSYFLGGAGVRGLNIQEEFVKFTGIGVYLEDKAVSSLAAKWKGKSAA 74

Query: 142 NIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDAL-DDAISPRIRIPTPVDES--AL 198
            + +    +  I + P EK ++   +R +DG+ +   + ++ ++    + T  DE   A+
Sbjct: 75  ELLDSLDFYRDIIKGPFEKLIRGSKLRTLDGREYVRKVSENCVAHMQSVGTYSDEEEKAI 134

Query: 199 STFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFF 257
             FR+ F+ +N   G+ +F        + +S S D  +P    A I+++ ++ A+ +   
Sbjct: 135 EEFRNAFKDQNFPPGSTVFYKQSPTGTLGLSFSKDETIPEHEHAVIDNKPLSEAVLETMI 194

Query: 258 GGAPVSPSLKASVATGLATILK 279
           G  PVSP+LK S+AT      K
Sbjct: 195 GEIPVSPALKESLATRFHQFFK 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Glycine max (taxid: 3847)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q3Y4F4|CFI_CANGE Chalcone--flavonone isomerase OS=Canna generalis GN=CHI PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 6/204 (2%)

Query: 82  KVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGA 140
           +V F  + + PG SS L L G G R        V   A G+Y+    +S L   WKGK A
Sbjct: 15  EVTFPPAAAPPGSSSSLFLAGAGERGLEIDRQFVVFTAIGVYLEDLAVSTLGPKWKGKTA 74

Query: 141 ANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIP---TPVDESA 197
            ++  +S  F  I+  P EK  +I +V+ + G+ + + +++      +     T  + +A
Sbjct: 75  DDLAGNSDFFRDIFTGPFEKFTRITMVKPLSGQQYSEKVEENCVAHWKAAGTYTEAEAAA 134

Query: 198 LSTFRSIFQGRNLMKGTFIFLT-WLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDV 255
           +  F+   +      GT I  T  + P+ + ++   +G +P   +  IES+ ++ A+ + 
Sbjct: 135 VEKFKEACKNETFPPGTSILFTHQVSPASLTITFWREGSMPETGNTVIESKALSEAILES 194

Query: 256 FFGGAPVSPSLKASVATGLATILK 279
             G   VSP  K SVA  L+ IL+
Sbjct: 195 IIGKHGVSPGAKRSVAQRLSEILE 218

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Canna generalis (taxid: 341692)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q53B70|CF1B2_SOYBN Chalcone--flavonone isomerase 1B-2 OS=Glycine max GN=CHI1B2 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 83  VKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAA 141
           ++F   ++ P  +    L G G R        VK    G+Y+    +S L A WKGK AA
Sbjct: 15  LQFPALVTPPASTKSYFLGGAGVRGLNIQEEFVKFTGIGVYLEDKAVSSLGAKWKGKSAA 74

Query: 142 NIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPTPVDESAL 198
            + +    +  I + P EK ++   +R +DG+ +   + +   A    +   +  +E A+
Sbjct: 75  ELLDSLDFYRDIIKGPFEKLIRGSKLRTLDGREYVRKVSENCVAHMESVGTYSEAEEKAI 134

Query: 199 STFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFF 257
             FR+ F+ +N   G+ +F        + +S S D  +P    A I+++ ++ A+ +   
Sbjct: 135 EEFRNAFKDQNFPPGSTVFYKQSPTGTLGLSFSKDETIPEHEHAVIDNKPLSEAVLETMI 194

Query: 258 GGAPVSPSLKASVATGLATILK 279
           G  PVSP+LK S+AT      K
Sbjct: 195 GEIPVSPALKESLATRFHQFFK 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Glycine max (taxid: 3847)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q4AE11|CFI1_FRAAN Chalcone--flavonone isomerase 1 OS=Fragaria ananassa GN=CHI1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 5/200 (2%)

Query: 85  FQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAANI 143
           F  S+  PG  +   L G G R        VK  A G+Y+    +  L   WKGK A  +
Sbjct: 15  FPPSVKPPGSGNTFFLGGAGVRGMEIQGNFVKFTAIGVYLEDKAVPALAVKWKGKTAEEL 74

Query: 144 QEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPTPVDESALST 200
            E    F  I   P EK  ++ ++  + G+ + + + +   AI  +  I T  +  A+  
Sbjct: 75  TESVEFFREIVTGPFEKFTQVTMILPLTGQQYSEKVSENCVAIWKKFGIYTDAEAKAIEK 134

Query: 201 FRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFFGG 259
           F  +F+ +    G  I  T      + +  S DG +P   +A IE++ ++ ++ +   G 
Sbjct: 135 FIEVFKDQTFPPGASILFTQSPDGSLTIGFSKDGCIPEVGNAVIENKLLSESVLESIIGK 194

Query: 260 APVSPSLKASVATGLATILK 279
             VSP  + SVAT L+ +LK
Sbjct: 195 PGVSPEARKSVATRLSELLK 214

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Fragaria ananassa (taxid: 3747)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|A7ISP5|CFI2B_SOYBN Chalcone--flavonone isomerase 2-B OS=Glycine max GN=CHI2-B PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 6/203 (2%)

Query: 83  VKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAA 141
           ++F   ++ PG +    L G G R        VK    G+Y+    +S L A WKGK AA
Sbjct: 15  LQFPALVTPPGSTKSYFLGGAGVRGLNIQEEFVKFTGIGVYLEDKAVSSLAAKWKGKSAA 74

Query: 142 NIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDAL-DDAISPRIRIPTPVDES--AL 198
            + +    +  I + P EK ++   +R +DG+ +   + ++ ++    + T  DE   A+
Sbjct: 75  ELLDSLDFYRDIIKGPFEKLIRGSKLRTLDGREYVRKVSENCVAHMQSVGTYSDEEEKAI 134

Query: 199 STFRSIFQGRNLMKGTFIFLTWLDPSKM--LVSISGDGLPSGVDATIESENVTFALYDVF 256
             FR+ F+ +N   G+ +F        +  L+    + +P    A I+++ ++ A+ +  
Sbjct: 135 EEFRNAFKDQNFPPGSTVFYKQSPTGTLGQLIFSKDETIPEHEHAVIDNKPLSEAVLETM 194

Query: 257 FGGAPVSPSLKASVATGLATILK 279
            G  PVSP+LK S+AT      K
Sbjct: 195 IGEIPVSPALKESLATRFHQFFK 217

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Glycine max (taxid: 3847)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q2PF16|CFI_VERHY Chalcone--flavonone isomerase OS=Verbena hybrida GN=CHI PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 5/209 (2%)

Query: 76  TEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA- 134
           TE     V F  ++  PG      L G G R        +K  A G+Y+    ++ L A 
Sbjct: 8   TEVQVESVVFPPAVKPPGSDKTFFLGGAGVRGLEIEGKFIKFTAIGVYLENDAVTSLAAK 67

Query: 135 WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPT 191
           WKGK A  + +    F  I   P EK  K+  +  + G+ + + + +   A    I   T
Sbjct: 68  WKGKTAEEVADSGDFFAEIVTGPFEKFTKVTTILPLTGQQYSEKVVENCVAYWKAIGKFT 127

Query: 192 PVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTF 250
             ++ A   F  +F+      G  I  T      + +S S DG +P   +A IE++ ++ 
Sbjct: 128 DAEDEATKKFLQVFKNEMFHPGASILFTQSPQGSLTISFSKDGSIPEKENAIIENKQLSE 187

Query: 251 ALYDVFFGGAPVSPSLKASVATGLATILK 279
           A+ +   G   VSPS K S+A  L+ +LK
Sbjct: 188 AVLESIIGKKGVSPSAKQSLAARLSDLLK 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Verbena hybrida (taxid: 76714)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9ZWR1|CFI_CITSI Chalcone--flavonone isomerase OS=Citrus sinensis GN=CHI PE=2 SV=1

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 6/212 (2%)

Query: 72  SAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSK 131
           S   TE     V F  S+  PG +    L G G R        VK  A G+Y+    +  
Sbjct: 4   SPSVTELQVENVTFTPSVQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPL 63

Query: 132 L-NAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRI 187
           L   WKGK A  + E    F  +   P EK +K+ ++  + G  + + + +   AI    
Sbjct: 64  LAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFF 123

Query: 188 RIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESE 246
            I T  +  A+  F  +F+      G+ I  T   P  + +S S DG +P    A IES 
Sbjct: 124 GIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQ-SPGSLTISFSKDGSIPKDGVAVIESN 182

Query: 247 NVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
            ++ A+ +   G   VSP+ K S+A  L+ +L
Sbjct: 183 LLSEAVLESMIGKNGVSPAAKKSLAERLSALL 214

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Citrus sinensis (taxid: 2711)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q42663|CFI_CALCH Chalcone--flavonone isomerase (Fragment) OS=Callistephus chinensis GN=CHI PE=2 SV=1

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 5/202 (2%)

Query: 83  VKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAA 141
           + F  S+  PG ++ L L G G R        VK    G+Y+    +  L A  KGK  A
Sbjct: 15  IVFPSSVKPPGSTNSLFLGGAGVRGMEIQGNFVKFTGIGVYLEDKAIPLLAAKRKGKTVA 74

Query: 142 NIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPTPVDESAL 198
            + +    F  I   P EK  ++ ++  + GK + + + +    +   +   T  D + +
Sbjct: 75  ELLDSVEFFRDIVTGPFEKFTQVTMILPLTGKQYSEKVSEMCVGVWKALGTYTDADGTTI 134

Query: 199 STFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFF 257
             F  +F+  N + G+ I  T      + +S S DG +P   +  +E+E +  A+ +   
Sbjct: 135 EKFLEVFKDENFLPGSSILFTTSPLGSLTISFSKDGTIPEAANVVLENEKLAQAVIESVI 194

Query: 258 GGAPVSPSLKASVATGLATILK 279
           G   VSP+ K S+A+ L+ ++K
Sbjct: 195 GKNGVSPATKQSLASRLSDLMK 216

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Callistephus chinensis (taxid: 13379)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q53B74|CFI2A_SOYBN Chalcone--flavonone isomerase 2-A OS=Glycine max GN=CHI2-A PE=2 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 82  KVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGA 140
            V F  ++  P   +   L G G R        VK  A  +Y+    LS L+  WK K  
Sbjct: 13  NVTFPPTVKPPCSPNTFFLAGAGVRGLQIHHAFVKFTAICIYLQYDALSFLSVKWKTKST 72

Query: 141 ANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPTPVDESA 197
             + E    F  I   P EK +++ +++ + G+ + + + +   AI   + I T  +  A
Sbjct: 73  HQLTESDQFFSDIVTGPFEKFMQVTMIKPLTGQQYSEKVAENCVAIWRSLGIYTDSEAEA 132

Query: 198 LSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVF 256
           +  F S+F+      G+ I  T      + +S SGD  +P    A IE++ ++ A+ +  
Sbjct: 133 IDKFLSVFKDLTFPPGSSILFTVSPNGSLTISFSGDETIPEVTSAVIENKLLSEAVLESM 192

Query: 257 FGGAPVSPSLKASVATGLATILK 279
            G   VSP+ K S+A+ L+ + K
Sbjct: 193 IGKNGVSPAAKQSLASRLSHLFK 215

Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2',4',6'-tetrahydroxychalcone (also termed chalcone) into naringenin.

Glycine max (taxid: 3847)

EC: 5

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
359493644	283	PREDICTED: chalcone--flavonone isomerase	0.903	0.890	0.706	1e-92
449456545	278	PREDICTED: chalcone--flavonone isomerase	0.806	0.809	0.747	6e-91
224119114	282	chalcone isomerase-like protein [Populus	0.752	0.744	0.790	6e-90
147828316	234	hypothetical protein VITISV_004495 [Viti	0.752	0.897	0.733	6e-89
388502054	277	unknown [Medicago truncatula]	0.853	0.859	0.634	2e-80
297853130	288	hypothetical protein ARALYDRAFT_474480 [	0.767	0.743	0.706	8e-80
21536962	287	chalcone isomerase, putative [Arabidopsi	0.956	0.930	0.559	1e-78
15220807	287	chalcone isomerase-like protein [Arabido	0.956	0.930	0.559	2e-78
255638187	281	unknown [Glycine max]	0.953	0.946	0.581	4e-78
351725959	281	chalcone isomerase 3-like [Glycine max]	0.953	0.946	0.578	3e-77

>gi|359493644|ref|XP_002283758.2| PREDICTED: chalcone--flavonone isomerase-like [Vitis vinifera] gi|302142793|emb|CBI20088.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 185/262 (70%), Positives = 207/262 (79%), Gaps = 10/262 (3%)

Query: 28  FLGKFAEPHAKSFRNKPCSLLSAFS-------ATRIQPHFTVKASSSSSVGSA---EYTE 77
           F GK        ++   CSLLS F+         R Q H +  ASSSSS  S    EY E
Sbjct: 22  FPGKLPNSGVTRYKIHTCSLLSTFAHHFSLQRKDRFQTHVSPNASSSSSSASVGSAEYIE 81

Query: 78  EPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKG 137
           EP+T VKFQ SL+LP  SSPLSLLGTGYREKVFAIIGVKVYAAGLY+NQSI +KLNAWKG
Sbjct: 82  EPSTNVKFQTSLTLPECSSPLSLLGTGYREKVFAIIGVKVYAAGLYLNQSISNKLNAWKG 141

Query: 138 KGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESA 197
           + A  IQ DSSLFD+I+Q P EKSL+IVLVRDVDGKTFWDALD+AISPRI+ P+PVD SA
Sbjct: 142 RSATEIQGDSSLFDSIFQIPQEKSLQIVLVRDVDGKTFWDALDEAISPRIKAPSPVDVSA 201

Query: 198 LSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFF 257
           LSTFRSIFQGR+L KGTFIFLTW++PSKMLV IS DGLPS VDATI+S NVT AL+DVFF
Sbjct: 202 LSTFRSIFQGRSLRKGTFIFLTWMEPSKMLVCISSDGLPSSVDATIKSMNVTMALFDVFF 261

Query: 258 GGAPVSPSLKASVATGLATILK 279
           G +PVSPSLKASVA GLAT+LK
Sbjct: 262 GNSPVSPSLKASVANGLATVLK 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456545|ref|XP_004146009.1| PREDICTED: chalcone--flavonone isomerase 2-like [Cucumis sativus] gi|449522578|ref|XP_004168303.1| PREDICTED: chalcone--flavonone isomerase 2-like [Cucumis sativus]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 169/226 (74%), Positives = 198/226 (87%), Gaps = 1/226 (0%)

Query: 55  RIQPHFTVKASSS-SSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAII 113
           R   +F+++ SSS +SVG+A + EEP+T VKF  SL+LPG S+ LSLLGTGYREKVFAII
Sbjct: 53  RFYSNFSLRPSSSLASVGNAGFVEEPSTNVKFPTSLTLPGCSTSLSLLGTGYREKVFAII 112

Query: 114 GVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGK 173
           GVKVYAAGLYIN S+ ++LNAW+G+ AA IQEDSSLFD I+Q+ SEKSL+IVLVRDVDGK
Sbjct: 113 GVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSRSEKSLQIVLVRDVDGK 172

Query: 174 TFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGD 233
           TFWDALDDAISPRI+ PTP DESALSTFRSIF+GR+L KGTFIFLTWL+P KMLVSIS D
Sbjct: 173 TFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIFLTWLEPPKMLVSISID 232

Query: 234 GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
           G P+G+DATIES NVT +L+DVFFG +PVSP+LKASVATGLA +LK
Sbjct: 233 GSPTGIDATIESNNVTSSLFDVFFGDSPVSPTLKASVATGLAAVLK 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119114|ref|XP_002331328.1| chalcone isomerase-like protein [Populus trichocarpa] gi|222873911|gb|EEF11042.1| chalcone isomerase-like protein [Populus trichocarpa]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 166/210 (79%), Positives = 184/210 (87%)

Query: 70  VGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSIL 129
           VGSAEYTEE ATK KFQ+SLSLPG S+ LSLLGTGYREKVFAIIGVKVYAAGLY+N SIL
Sbjct: 73  VGSAEYTEETATKEKFQRSLSLPGCSTSLSLLGTGYREKVFAIIGVKVYAAGLYVNPSIL 132

Query: 130 SKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRI 189
           S L+ WKG+ A+ IQE+S+LF +I+QAP EKSL+IVLVRD+DGKTFWDALDDAISPRI+ 
Sbjct: 133 STLSTWKGQSASEIQENSALFSSIFQAPLEKSLQIVLVRDIDGKTFWDALDDAISPRIKT 192

Query: 190 PTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVT 249
             PVDESALS FRSIFQGR+L KGT IFLTWL+PSKMLV +S DG+PS VDA IESENVT
Sbjct: 193 AIPVDESALSIFRSIFQGRSLKKGTLIFLTWLNPSKMLVCVSSDGIPSSVDARIESENVT 252

Query: 250 FALYDVFFGGAPVSPSLKASVATGLATILK 279
            AL+DVFFG APVSPSLK S A GLATILK
Sbjct: 253 SALFDVFFGDAPVSPSLKNSAANGLATILK 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828316|emb|CAN75399.1| hypothetical protein VITISV_004495 [Vitis vinifera]

 Score =  333 bits (853), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 168/229 (73%), Positives = 187/229 (81%), Gaps = 19/229 (8%)

Query: 70  VGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGT-------------------GYREKVF 110
           +GSAEY EEP+T VKFQ SL+LP  SSPLSLLGT                   GYREKVF
Sbjct: 6   IGSAEYIEEPSTNVKFQTSLTLPECSSPLSLLGTVFEHPKLTKAFIFMVCNNSGYREKVF 65

Query: 111 AIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDV 170
           AIIGVKVYAAGLY+NQSI +KLNAWKG+ A  IQ DSSLFD+I+Q P EKSL+IVLVRDV
Sbjct: 66  AIIGVKVYAAGLYLNQSISNKLNAWKGRSATEIQGDSSLFDSIFQIPLEKSLQIVLVRDV 125

Query: 171 DGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSI 230
           DGKTFWDALD+AISPRI+ P+PVD SALSTFRSIFQGR+L KGTFIFLTW++PSKMLV I
Sbjct: 126 DGKTFWDALDEAISPRIKAPSPVDVSALSTFRSIFQGRSLRKGTFIFLTWMEPSKMLVCI 185

Query: 231 SGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
           S DGLPS VDATI+S NVT  L+DVFFG +PVSPSLKASVA GLAT+LK
Sbjct: 186 SSDGLPSSVDATIKSMNVTMVLFDVFFGNSPVSPSLKASVANGLATVLK 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502054|gb|AFK39093.1| unknown [Medicago truncatula]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/252 (63%), Positives = 194/252 (76%), Gaps = 14/252 (5%)

Query: 42  NKPCSLLSAFS---------ATRIQPHF-----TVKASSSSSVGSAEYTEEPATKVKFQK 87
           +KP + + +FS         A+   PHF     +  +SSSS+  +AEY EEPAT VKFQ 
Sbjct: 26  SKPLNYVHSFSLFTPPSLHFASERHPHFFPQAASSSSSSSSAAANAEYLEEPATNVKFQT 85

Query: 88  SLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDS 147
           SLS PG S  L+L GTGYREKVFAIIGVKVYA+GLY+NQSI+++LNAWKG+    IQ  S
Sbjct: 86  SLSFPGCSDSLTLFGTGYREKVFAIIGVKVYASGLYLNQSIVNELNAWKGQSKDVIQGKS 145

Query: 148 SLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQG 207
           SLF TI+Q+P EK L+IVLVRDVDGKTFWDAL DAISPRI  PT  DE+AL+TFRS+FQ 
Sbjct: 146 SLFKTIFQSPLEKLLQIVLVRDVDGKTFWDALSDAISPRIAKPTTADETALTTFRSVFQD 205

Query: 208 RNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLK 267
           R L KGTFIFLTWL+P+K+LVS+S +G+PS  DATIES NVT+AL+DVF G +PVSPSLK
Sbjct: 206 RPLKKGTFIFLTWLNPTKLLVSVSSEGIPSTADATIESANVTYALFDVFLGDSPVSPSLK 265

Query: 268 ASVATGLATILK 279
           ASVA  L+ +L+
Sbjct: 266 ASVAQCLSKVLE 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853130|ref|XP_002894446.1| hypothetical protein ARALYDRAFT_474480 [Arabidopsis lyrata subsp. lyrata] gi|297340288|gb|EFH70705.1| hypothetical protein ARALYDRAFT_474480 [Arabidopsis lyrata subsp. lyrata]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 180/215 (83%), Gaps = 1/215 (0%)

Query: 65  SSSSSVGSA-EYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLY 123
           S++SSVG+  EY EE AT VKFQ+S++LPG SSPLSLLGTG+REK FAIIGVKVYAAG Y
Sbjct: 73  SAASSVGNVDEYAEETATSVKFQRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYY 132

Query: 124 INQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAI 183
           +N+SILS L+AWKG+ A  IQ DSSLF +I+QA +EKSL+IVLVRDVDGKTFWDALD+AI
Sbjct: 133 VNESILSGLSAWKGRSADEIQRDSSLFSSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAI 192

Query: 184 SPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATI 243
           SPRI+ P+  D +ALSTFR IFQ R L KG+ I LTW++ SKMLVSIS +GLP+ VDATI
Sbjct: 193 SPRIKSPSSDDTTALSTFRGIFQNRPLNKGSVILLTWINTSKMLVSISSEGLPTDVDATI 252

Query: 244 ESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
           ES NVT AL+DVFFG +PVSP+LK+SVA  LA  L
Sbjct: 253 ESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 287

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536962|gb|AAM61303.1| chalcone isomerase, putative [Arabidopsis thaliana]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/293 (55%), Positives = 204/293 (69%), Gaps = 26/293 (8%)

Query: 1   MAAISTPICFSSLVIPCKTWKTNSS--H-----------LFLGKFAEPHAKSF-RNKPCS 46
           +AA+ + +C S L I C+      S  H           L  G +      S  +N+ C 
Sbjct: 5   LAAVPSAVCVS-LRISCRNLDNAESIYHFPGKSLNRVSVLQTGNYVSRKGNSLLKNRHCG 63

Query: 47  LLSAFSATRIQPHFTVKASSSSSVGSAE-YTEEPATKVKFQKSLSLPGYSSPLSLLGTGY 105
            +S            +  S++SSVG+AE Y EE AT VKF++S++LPG SSPLSLLGTG+
Sbjct: 64  EISR----------VIVKSAASSVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGF 113

Query: 106 REKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIV 165
           REK FAIIGVKVYAAG Y+N+SILS L+AWKG+ A  IQ DSSLF +I+QA +EKSL+IV
Sbjct: 114 REKKFAIIGVKVYAAGYYVNESILSGLSAWKGRSADEIQRDSSLFVSIFQAQAEKSLQIV 173

Query: 166 LVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSK 225
           LVRDVDGKTFWDALD+AISPRI+ P+  D +ALSTFR IFQ R L KG+ I LTW++ S 
Sbjct: 174 LVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSVILLTWINTSN 233

Query: 226 MLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
           MLVS+S  GLP+ VDATIES NVT AL+D+FFG +PVSP+LK+SVA  LA  L
Sbjct: 234 MLVSVSSGGLPTNVDATIESGNVTSALFDLFFGDSPVSPTLKSSVANQLAMTL 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220807|ref|NP_175757.1| chalcone isomerase-like protein [Arabidopsis thaliana] gi|12324026|gb|AAG51975.1|AC024260_13 chalcone isomerase, putative; 94270-95700 [Arabidopsis thaliana] gi|106879197|gb|ABF82628.1| At1g53520 [Arabidopsis thaliana] gi|332194830|gb|AEE32951.1| chalcone isomerase-like protein [Arabidopsis thaliana]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/293 (55%), Positives = 203/293 (69%), Gaps = 26/293 (8%)

Query: 1   MAAISTPICFSSLVIPCKTWKTNSS--H-----------LFLGKFAEPHAKSF-RNKPCS 46
           +AA+ + +C S L I C+      S  H           L  G +      S  +N+ C 
Sbjct: 5   LAAVPSAVCVS-LRISCRNLDNAESIYHFPGKSLNRVSVLQTGNYVSRKGNSLLKNRHCG 63

Query: 47  LLSAFSATRIQPHFTVKASSSSSVGSAE-YTEEPATKVKFQKSLSLPGYSSPLSLLGTGY 105
            +S            +  S++SSVG+AE Y EE AT VKF++S++LPG SSPLSLLGTG+
Sbjct: 64  EISR----------VIVKSAASSVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGF 113

Query: 106 REKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIV 165
           REK FAIIGVKVYAAG Y+N+SILS L+AW G+ A  IQ DSSLF +I+QA +EKSL+IV
Sbjct: 114 REKKFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIV 173

Query: 166 LVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSK 225
           LVRDVDGKTFWDALD+AISPRI+ P+  D +ALSTFR IFQ R L KG+ I LTW++ S 
Sbjct: 174 LVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSVILLTWINTSN 233

Query: 226 MLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
           MLVS+S  GLP+ VDATIES NVT AL+DVFFG +PVSP+LK+SVA  LA  L
Sbjct: 234 MLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638187|gb|ACU19407.1| unknown [Glycine max]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 167/287 (58%), Positives = 204/287 (71%), Gaps = 21/287 (7%)

Query: 3   AISTPICFSSLV----------IPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFS 52
           A ST +CFS             I   T   N+ H FL   A+P             S+  
Sbjct: 6   AASTSLCFSPSTYSTRIVVLRRISNSTLALNNGHSFLLLSAKPMH----------FSSHK 55

Query: 53  ATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAI 112
           ++R QPHF  +A++SS+V +AEY EEPAT VKFQ SLS PG S+ L+L GTGYREKVFAI
Sbjct: 56  SSRRQPHFLAQAAASSAV-NAEYVEEPATNVKFQTSLSFPGCSNSLTLFGTGYREKVFAI 114

Query: 113 IGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDG 172
           IGVKVYAAGLY++QSI  +LNAWKG+    IQ +SSLF+TI+Q+  EKSL+I+LVRDVDG
Sbjct: 115 IGVKVYAAGLYLDQSIALELNAWKGQSKEAIQGNSSLFETIFQSSFEKSLQIILVRDVDG 174

Query: 173 KTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISG 232
           KTFWDAL DAISPRI+ PT  DE+AL+TFR +F  R L KG  I LTWL+PS +LVS+S 
Sbjct: 175 KTFWDALSDAISPRIQQPTTTDETALTTFRGVFLDRPLKKGAIIILTWLNPSGLLVSVSS 234

Query: 233 DGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
           +GLPS +DATIES NV FAL++VF G +PVSPSLKASVA  L+ +LK
Sbjct: 235 NGLPSTMDATIESANVAFALFNVFLGDSPVSPSLKASVAESLSKVLK 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725959|ref|NP_001238390.1| chalcone isomerase 3-like [Glycine max] gi|51039628|gb|AAT94361.1| putative chalcone isomerase 3 [Glycine max]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/287 (57%), Positives = 203/287 (70%), Gaps = 21/287 (7%)

Query: 3   AISTPICFSSLV----------IPCKTWKTNSSHLFLGKFAEPHAKSFRNKPCSLLSAFS 52
           A ST +CFS             I   T   N+ H FL   A+P             S+  
Sbjct: 6   AASTSLCFSPSTYSTRIVVLRRISNSTLALNNGHSFLLLSAKPMH----------FSSHK 55

Query: 53  ATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAI 112
           ++R QPHF  +A++SS+V +AEY EEPAT VKFQ SLS PG S+ L+L GTGYREKVFAI
Sbjct: 56  SSRRQPHFLAQAAASSAV-NAEYVEEPATNVKFQTSLSFPGCSNSLTLFGTGYREKVFAI 114

Query: 113 IGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDG 172
           IGVKVYAAGLY++QSI  +LNAWKG+    IQ +SSLF+TI+Q+  EKSL+I+LVRDVDG
Sbjct: 115 IGVKVYAAGLYLDQSIALELNAWKGQSKEAIQGNSSLFETIFQSSFEKSLQIILVRDVDG 174

Query: 173 KTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISG 232
           KTFWDAL DAISPRI+ PT  DE+AL+TFR +F  R L KG  I LTWL+PS +LVS+S 
Sbjct: 175 KTFWDALSDAISPRIQQPTTTDETALTTFRGVFLDRPLKKGAIIILTWLNPSGLLVSVSS 234

Query: 233 DGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
           +GLPS +DATIES NV  AL++VF G +PVSPSLKASVA  L+ +LK
Sbjct: 235 NGLPSTMDATIESANVASALFNVFLGDSPVSPSLKASVAESLSKVLK 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2024877	287	FAP3 "fatty-acid-binding prote	0.985	0.958	0.533	2.3e-64
TAIR|locus:2153539	209	CHIL "chalcone isomerase like"	0.584	0.779	0.217	3.3e-06
TAIR|locus:2097228	246	TT5 "TRANSPARENT TESTA 5" [Ara	0.566	0.642	0.239	3.7e-06
TAIR|locus:2057751	398	FAP2 "fatty-acid-binding prote	0.706	0.494	0.220	0.00012

TAIR|locus:2024877 FAP3 "fatty-acid-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 152/285 (53%), Positives = 184/285 (64%)

Query:     1 MAAISTPICFSSLVIPCKTW-KTNSSHLFLGKFAE-----PHAKSFRNKPCSLLSAFSAT 54
             +AA+ + +C S L I C+      S + F GK                K  SLL      
Sbjct:     5 LAAVPSAVCVS-LRISCRNLDNAESIYHFPGKSLNRVSVLQTGNYVSRKGNSLLKNRHCG 63

Query:    55 RIQPHFTVKAXXXXXVGSAE-YTEEPATKVKFQKXXXXXXXXXXXXXXXTGYREKVFAII 113
              I     VK+     VG+AE Y EE AT VKF++               TG+REK FAII
Sbjct:    64 EIS-RVIVKSAASS-VGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII 121

Query:   114 GVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGK 173
             GVKVYAAG Y+N+SILS L+AW G+ A  IQ DSSLF +I+QA +EKSL+IVLVRDVDGK
Sbjct:   122 GVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGK 181

Query:   174 TFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGD 233
             TFWDALD+AISPRI+ P+  D +ALSTFR IFQ R L KG+ I LTW++ S MLVS+S  
Sbjct:   182 TFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSVILLTWINTSNMLVSVSSG 241

Query:   234 GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
             GLP+ VDATIES NVT AL+DVFFG +PVSP+LK+SVA  LA  L
Sbjct:   242 GLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 286

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

TAIR|locus:2153539 CHIL "chalcone isomerase like" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 37/170 (21%), Positives = 76/170 (44%)

Query:   115 VKVYAAGLYINQS-ILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGK 173
             VK  A G+Y++ S + + L+ WKGK    +  D   FD +  A  EK +++V+++++ G 
Sbjct:    40 VKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGA 99

Query:   174 TFWDALDDAISPRIRIPTPVDESALSTFRSI---FQGRNLMKGTFIFLTWLDPSKML-VS 229
              +   L++ +  R+      +E   +    +   FQ +     + I   +     +  + 
Sbjct:   100 QYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIG 159

Query:   230 ISGDGLPSGVDATIESENVTFALYDVFFGGAP-VSPSLKASVATGLATIL 278
                +G        +E+ NV   +   +  G+  VSPS   S+A  ++ +L
Sbjct:   160 FETEGKEEE-KLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL 208

GO:0009507 "chloroplast" evidence=ISM

GO:0009813 "flavonoid biosynthetic process" evidence=IEA;RCA

GO:0016872 "intramolecular lyase activity" evidence=IEA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0045430 "chalcone isomerase activity" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2097228 TT5 "TRANSPARENT TESTA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 39/163 (23%), Positives = 73/163 (44%)

Query:   121 GLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDAL 179
             G+Y+  + +  L+  WKGK    + E    F  I     EK +K+ +   + G+ + + +
Sbjct:    62 GVYLEGNAVPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKV 121

Query:   180 DD---AISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSIS-GDGL 235
              +   AI  ++ + T  +  A+  F  IF+      G+ I         + V+ S  D +
Sbjct:   122 TENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSI 181

Query:   236 PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
             P    A IE++ +  A+ +   G   VSP  + SVA  L+ ++
Sbjct:   182 PETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLM 224

GO:0009507 "chloroplast" evidence=ISM

GO:0009813 "flavonoid biosynthetic process" evidence=IEA;RCA;IMP

GO:0016872 "intramolecular lyase activity" evidence=IEA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0045430 "chalcone isomerase activity" evidence=IEA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=IDA

GO:0010224 "response to UV-B" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009411 "response to UV" evidence=IMP

TAIR|locus:2057751 FAP2 "fatty-acid-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
 Identities = 46/209 (22%), Positives = 88/209 (42%)

Query:    78 EPATKVKFQKXXXXXXXXXXXXXX-XTGYRE-KVFAIIGVKVYAAGLYIN-QSILSKLNA 134
             EP T ++F                  TG R  K+  I  +KVYA G Y++  S+  KL  
Sbjct:   193 EPRTGIEFPMLLKENASRSNSEVLVATGSRTMKIIRIKSLKVYAFGFYVHPSSVCQKLGR 252

Query:   135 -WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVL-VRDVDGKTFWDALDDAISPRIRIPTP 192
              +    A+ + +   L+  + +     S+++V+    +   T  D  + ++  R+    P
Sbjct:   253 KYASVPASKLDKCDDLYKDLLREDIVMSVRLVVNYNGLKINTVRDVFEKSLRARLVKANP 312

Query:   193 -VDESALSTFRSIF-QGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTF 250
               D + L+ F S F Q   +  GT I     +  +++  I G+ +       + S+++  
Sbjct:   313 KTDFNCLNDFGSFFRQDIPIPAGTIIDFRRTEDGQLITEIGGNLI-----GAVRSKDLCR 367

Query:   251 ALYDVFFGGAPVSPSLKASVATGLATILK 279
             A + ++ G  PVS   K  +   +  I+K
Sbjct:   368 AFFGMYIGDVPVSEQTKEEIGRKVVGIIK 396


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      279       259   0.00088  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.44u 0.11s 19.55t   Elapsed:  00:00:01
  Total cpu time:  19.44u 0.11s 19.55t   Elapsed:  00:00:01
  Start:  Fri May 10 13:14:25 2013   End:  Fri May 10 13:14:26 2013

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.5.1	LOW CONFIDENCE prediction!
4th Layer	5.5.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN02311	271	PLN02311, PLN02311, chalcone isomerase	1e-124
pfam02431	200	pfam02431, Chalcone, Chalcone-flavanone isomerase	5e-56
PLN02804	206	PLN02804, PLN02804, chalcone isomerase	7e-22
PLN02559	230	PLN02559, PLN02559, chalcone--flavonone isomerase	4e-13
PLN03174	278	PLN03174, PLN03174, Chalcone-flavanone isomerase-r	3e-06
PLN03175	415	PLN03175, PLN03175, hypothetical protein; Provisio	7e-05

>gnl|CDD|215177 PLN02311, PLN02311, chalcone isomerase

 Score =  354 bits (909), Expect = e-124
 Identities = 179/268 (66%), Positives = 202/268 (75%), Gaps = 7/268 (2%)

Query: 17  CKTWKTNSSHLFLGKFAE-----PHAKSFRNKPCSLLSAFSATRIQPHFTVKASSSSSVG 71
             T    S + F GK            +  + P SLL       I        S++ SVG
Sbjct: 6   RNTDNAESIYHFPGKSPNRVSVLQTGNTVSDSPNSLLKHRHCNEISRVIV--KSAAFSVG 63

Query: 72  SAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSK 131
           SAEY EE AT VKFQ+SL+LPG SSPLSLLGTGYREKVFAIIGVKVYAAGLY+N SILS 
Sbjct: 64  SAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSG 123

Query: 132 LNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPT 191
           L+AWKG+ A  IQ DSSLF +I+QAP+EKSL+IVLVRDVDGKTFWDALD+AISPRI+ P+
Sbjct: 124 LSAWKGRSADEIQRDSSLFSSIFQAPAEKSLQIVLVRDVDGKTFWDALDEAISPRIKAPS 183

Query: 192 PVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFA 251
           P D SALSTFRSIFQ R+L KGT IFLTW++PSKMLV IS +GLPS VDATIES NVT A
Sbjct: 184 PDDTSALSTFRSIFQNRSLNKGTVIFLTWINPSKMLVCISSEGLPSSVDATIESGNVTSA 243

Query: 252 LYDVFFGGAPVSPSLKASVATGLATILK 279
           L+DVFFG +PVSPSLKASVA GLAT LK
Sbjct: 244 LFDVFFGDSPVSPSLKASVANGLATTLK 271

Length = 271

>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase

 Score =  178 bits (454), Expect = 5e-56
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 7/200 (3%)

Query: 85  FQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQS-ILSKLNAWKGKGAANI 143
           F  ++S PG    L LLG G R   F    +KVYA G+Y+ +S + S  + WKGK A  +
Sbjct: 1   FPPTISPPGSPKSLFLLGAGVRGVSFLGKFIKVYAIGVYLAKSDVPSLASKWKGKSAEEL 60

Query: 144 QEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIR---IPTPVDESALST 200
           +E    F  +     EK ++IV +R++DGK   D   +++  R++        +E AL  
Sbjct: 61  EESEDFFRDLLDGGIEKFIRIVPIRNLDGKHLRDGFVESLVARLKKAGTYEDEEEEALEK 120

Query: 201 FRSIFQGR-NLMKGTFIFLTWLDPSKMLVSISGDGL-PSGVDATIESENVTFALYDVFFG 258
           FR  F+ + ++ KG+ I  T      + +S S DG  P      +E++ V+ AL   +  
Sbjct: 121 FREAFKDKGSVPKGSSILFTRSPDGSLTISFSKDGKIPETELGVVENKLVSRALLLSYLA 180

Query: 259 G-APVSPSLKASVATGLATI 277
           G  PVSP  K SVA GLA++
Sbjct: 181 GKKPVSPEAKKSVAEGLASL 200

Chalcone-flavanone isomerase is a plant enzyme responsible for the isomerisation of chalcone to naringenin, a key step in the biosynthesis of flavonoids. Length = 200

>gnl|CDD|178401 PLN02804, PLN02804, chalcone isomerase

 Score = 90.3 bits (224), Expect = 7e-22
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 12/192 (6%)

Query: 95  SSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIY 154
           S PLSLLG G  +     + +K  A G+Y+  S+   L +WKGK  + + ED   F  + 
Sbjct: 19  SKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPSVKGHLQSWKGKPGSELAEDDDFFQALI 78

Query: 155 QAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVD------ESALSTFRSIFQGR 208
           QAP EK ++IV+++++ G  +   L+ ++  R+      D      E AL      FQ +
Sbjct: 79  QAPVEKLIRIVVIKEIKGSQYGVQLESSVRDRL---AEDDKYEEEEEEALEKVVEFFQSK 135

Query: 209 NLMKGTFIFLTW-LDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGA-PVSPSL 266
              K + I   +      + +S S +G       T+E+ NV   +   + GG   VSPS 
Sbjct: 136 YFKKNSIITYHFPATSGIVEISFSTEG-KEESKLTVENANVVEMIQKWYLGGENGVSPST 194

Query: 267 KASVATGLATIL 278
            +SVA  +A  L
Sbjct: 195 ISSVADSIAAEL 206

Length = 206

>gnl|CDD|178173 PLN02559, PLN02559, chalcone--flavonone isomerase

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 83  VKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAA 141
           V F  S+  PG S+PL L G G R        +K  A G+Y+  + +  L   WKGK A 
Sbjct: 12  VTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAVPSLAKKWKGKTAE 71

Query: 142 NIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDD---AISPRIRIPTPVDESAL 198
            + +  + F  +     EK  ++ ++  + G+ + + + +   AI   + I T  +  A+
Sbjct: 72  ELADSVAFFRDVVTGDFEKFTRVTMILPLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAV 131

Query: 199 STFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFF 257
             F+  F+      G+ I  T      + V+ S D  +P   +A IE++ +  A+ +   
Sbjct: 132 EKFKEAFKEETFPPGSSILFTHSPTGSLTVAFSKDSSVPEVGNAVIENKLLCEAVLESII 191

Query: 258 GGAPVSPSLKASVATGLATILK 279
           G   VSP+ K S+A  L+ +LK
Sbjct: 192 GKHGVSPAAKLSLAARLSELLK 213

Length = 230

>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related; Provisional

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 20/224 (8%)

Query: 64  ASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVK---VYAA 120
           AS S +  S     E  T V F   +          LLG G R+K  +I+G+K   VYA 
Sbjct: 66  ASISLADPSPPSVVESKTGVSFPAEIG-----DSRRLLGVGLRKK--SILGLKNIDVYAF 118

Query: 121 GLYINQSILSKL--NAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRD-VDGKTFWD 177
           G+Y +   L KL    +    A+ ++ +    D + +A  + ++++ +V   +  ++   
Sbjct: 119 GVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRS 178

Query: 178 ALDDAISPRI-RIPTPVDESALSTFRSIFQGR-NLMKGTFIFLTWLDPSKMLVSISGDGL 235
           A ++++  R+ +     ++  L +F S+F+    + KG+ I L+      +  +I G  +
Sbjct: 179 AFEESVGSRLQKFGGSDNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHVLRTTIDGKEV 238

Query: 236 PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
            S     I+S+ +  ++ D++ G  P   + K  +   LA++L+
Sbjct: 239 GS-----IQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLLQ 277

Length = 278

>gnl|CDD|178719 PLN03175, PLN03175, hypothetical protein; Provisional

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 21/228 (9%)

Query: 65  SSSSSVGSAEYTE---EPATKVKFQKSLSLPGYSSPLS--LLGTGYRE-KVFAIIGVKVY 118
            S  S     +T    EP T ++F   L     SS  S  L+GTG R  K+  I  +KVY
Sbjct: 194 CSGLSFPDLNWTRDAVEPRTGIEFPMLLD-ENNSSLTSEVLVGTGSRTMKIIRIKSLKVY 252

Query: 119 AAGLYIN-QSILSKLN-AWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDG---K 173
           A G Y++  S+  KL   +    A+ +++    ++ + +   +  + + LV + +G    
Sbjct: 253 AFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLR--EDIVMTVRLVVNYNGLKIN 310

Query: 174 TFWDALDDAISPRIRIPTP-VDESALSTFRSIF-QGRNLMKGTFIFLTWLDPSKMLVSIS 231
           T  DA + ++  R++   P  D + L TF S F +   +  GT I        +++  I 
Sbjct: 311 TVRDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEIG 370

Query: 232 GDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
           G+ +       + S+++  A +D++ G  PVS   K  +   +A I++
Sbjct: 371 GNQI-----GAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGIIR 413

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
PLN02311	271	chalcone isomerase	100.0
PLN03174	278	Chalcone-flavanone isomerase-related; Provisional	100.0
PLN03175	415	hypothetical protein; Provisional	100.0
PLN02804	206	chalcone isomerase	100.0
PLN02559	230	chalcone--flavonone isomerase	100.0
PF02431	199	Chalcone: Chalcone-flavanone isomerase; InterPro:	100.0

>PLN02311 chalcone isomerase

Probab=100.00  E-value=3.5e-56  Score=405.60  Aligned_cols=256  Identities=69%  Similarity=0.977  Sum_probs=228.8

Q ss_pred             cceeeeecccCCCcccc--cccCCCcccccccccc--cCCCccccccccCCCCCCcceeecccCccccccccCCCCCCcc
Q 023649           23 NSSHLFLGKFAEPHAKS--FRNKPCSLLSAFSATR--IQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPL   98 (279)
Q Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~v~Ep~tgv~FP~~l~~~~~~~~l   98 (279)
                      .+.||||++.+||...+  ++.|+-++++..+-.+  ..+.....+++ .+++++.+++||+|||+||+.+++++++++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ep~TgV~Fp~~v~~~~~s~~L   90 (271)
T PLN02311         12 ESIYHFPGKSPNRVSVLQTGNTVSDSPNSLLKHRHCNEISRVIVKSAA-FSVGSAEYAEETATSVKFQRSLTLPGCSSPL   90 (271)
T ss_pred             hheeecCCCCCCCceEcccCCcccccccccccccccCcccceeeeccc-cccCcccceecCCcCCcCCccccCCCCCCce
Confidence            36788999999988777  5556666666555322  22333455666 5688999999999999999999999888899


Q ss_pred             eEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhhhhhCCCccccccChhHHHHHhcCCCeeEEEEEEEecCChhHHHHH
Q 023649           99 SLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDA  178 (279)
Q Consensus        99 ~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~~~~~~~~~el~~~~~~~~~ll~~~~~k~Lri~~~R~v~~~~~~da  178 (279)
                      +|+|+|+|+|+|.+++||||++|||+++...++|++|++++++||.+|.+||++|++++++|+|||++.|+++++++++|
T Consensus        91 ~LnGaGvR~K~I~~~~vKVYA~GLYL~~~~~~~L~kwkgk~a~eL~~~~~ff~dIi~a~~eK~irI~~iR~v~g~~~~~A  170 (271)
T PLN02311         91 SLLGTGYREKVFAIIGVKVYAAGLYVNPSILSGLSAWKGRSADEIQRDSSLFSSIFQAPAEKSLQIVLVRDVDGKTFWDA  170 (271)
T ss_pred             eEeeeEEeeEEEeeeeEEEEEEEEEechhhhhhHhhhcCCCHHHHhcchHHHHHHhcCCcceEEEEEEEecCCHHHHHHH
Confidence            99999999999988999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhcCCCCcccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEEEEEeCCCCCcccceeeCCHHHHHHHHHHhcC
Q 023649          179 LDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFG  258 (279)
Q Consensus       179 ~~e~l~~~l~~~~~~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG  258 (279)
                      |+|++++|++..+.+++++|++|.++|+++++++||+|+|+|.|++++++.++.+|+|.+..|+|++++|++|+|+||||
T Consensus       171 ~~eg~~~rlk~~~~~~~~aLekF~~~F~~~~l~kGd~I~~~~~p~~~~~v~~s~~g~~~~~~g~Ies~~f~~ALf~i~LG  250 (271)
T PLN02311        171 LDEAISPRIKAPSPDDTSALSTFRSIFQNRSLNKGTVIFLTWINPSKMLVCISSEGLPSSVDATIESGNVTSALFDVFFG  250 (271)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHhcCCCCCCCCEEEEEEeCCCceEEEEecCCcccceeEEECCHHHHHHHHHHhcC
Confidence            99999999977665788899999999998899999999999999999999998667665678999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhhC
Q 023649          259 GAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       259 ~~pvsp~lK~~l~~~l~~ll~  279 (279)
                      ++|+||++|+++++++++|||
T Consensus       251 d~PVs~~lK~sla~~la~ll~  271 (271)
T PLN02311        251 DSPVSPSLKASVANGLATTLK  271 (271)
T ss_pred             CCCCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999997

>PLN03174 Chalcone-flavanone isomerase-related; Provisional

Probab=100.00  E-value=7e-45  Score=332.84  Aligned_cols=214  Identities=21%  Similarity=0.354  Sum_probs=191.9

Q ss_pred             cCCCccccccccCCC-CCCcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEe-eEEEEEEEEEecCcchhh-h
Q 023649           56 IQPHFTVKASSSSSV-GSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAII-GVKVYAAGLYINQSILSK-L  132 (279)
Q Consensus        56 ~~~~~~~~~~~~~~~-~~a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l-~~kVYaagLY~~~~~~~~-L  132 (279)
                      ..+|.+|.|+|+|.+ .+++.++||+|||+||++++.++     +|+|+|+|+|.|..+ +||||++|||+++...++ |
T Consensus        57 ~~~~~~~~~~~~~~a~~~~~~~vEp~tGv~FP~~l~~~~-----~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L  131 (278)
T PLN03174         57 FHNSSSPPWASISLADPSPPSVVESKTGVSFPAEIGDSR-----RLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLL  131 (278)
T ss_pred             cCCCCCcccccceeccCCCCceeccCCCCcCCCcccCCC-----cceeeeeeeEEEeccceEEEEEEEEEechhHhHHHh
Confidence            458899999998654 56678999999999999998653     477999999987554 789999999999987666 6


Q ss_pred             h-hhhCCCccccccChhHHHHHhcCCCeeEEEEEEEe-cCChhHHHHHHHHHhchhcCCCCc-ccHHHHHHHHHhcCCC-
Q 023649          133 N-AWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVR-DVDGKTFWDALDDAISPRIRIPTP-VDESALSTFRSIFQGR-  208 (279)
Q Consensus       133 ~-~~~~~~~~el~~~~~~~~~ll~~~~~k~Lri~~~R-~v~~~~~~da~~e~l~~~l~~~~~-~~~~~L~~f~~~f~~~-  208 (279)
                      + +|++++++||.++.+|+++|++++++|++||++++ .++.++++++++|++.+|+++.+. +.++.|++|.++|+++ 
T Consensus       132 ~~k~kgks~~El~~s~~f~~dil~~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~IekF~~~F~~~~  211 (278)
T PLN03174        132 GEKYGKLSASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQSFTSLFKDEY  211 (278)
T ss_pred             hhhhcCCChhhhhcCHHHHHHHHcCCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhccc
Confidence            6 89999999999999999999999999999999975 699999999999999999887654 5666899999999874 


Q ss_pred             CCCCCCEEEEEEeCCCeEEEEEeCCCCCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649          209 NLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       209 ~l~kGd~i~l~~~p~~gl~v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~  279 (279)
                      .++|||+|+|+|.|++++.++++  |   ++.|+|++++|++|+|++|||++|+||++|++|+++|++||+
T Consensus       212 ~l~kGdvI~~~~~Pg~gl~vsi~--G---k~~g~Ie~~~f~~ALf~iyLGd~PVsp~lK~sll~~la~ll~  277 (278)
T PLN03174        212 KIPKGSVIDLSREPGHVLRTTID--G---KEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLLQ  277 (278)
T ss_pred             cCCCCCEEEEEEcCCCeEEEEEC--C---EEeeEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhc
Confidence            47899999999999999999996  7   568999999999999999999999999999999999999985

>PLN03175 hypothetical protein; Provisional

Probab=100.00  E-value=5.8e-42  Score=323.56  Aligned_cols=203  Identities=23%  Similarity=0.386  Sum_probs=186.1

Q ss_pred             CCcceeecccCcccccccc-CCCCCCcceEEeeEEEeeEEEE-eeEEEEEEEEEecCcc-hhhhh-hhhCCCccccccCh
Q 023649           72 SAEYTEEPATKVKFQKSLS-LPGYSSPLSLLGTGYREKVFAI-IGVKVYAAGLYINQSI-LSKLN-AWKGKGAANIQEDS  147 (279)
Q Consensus        72 ~a~~v~Ep~tgv~FP~~l~-~~~~~~~l~L~G~GvR~k~v~~-l~~kVYaagLY~~~~~-~~~L~-~~~~~~~~el~~~~  147 (279)
                      -.+.++||.|||+||..++ .+++...+.|+|+|+|.+.|.+ ++||||++|+|+++.+ ..+|+ +|+|++++||.++.
T Consensus       204 ~~~~~vEPkTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~  283 (415)
T PLN03175        204 WTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCP  283 (415)
T ss_pred             ccccccccCCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCH
Confidence            3567889999999999997 6776678999999999999864 6999999999999996 67798 99999999999999


Q ss_pred             hHHHHHhcCCCeeEEEEEEE-ecCChhHHHHHHHHHhchhcCCCCc-ccHHHHHHHHHhc-CCCCCCCCCEEEEEEeCCC
Q 023649          148 SLFDTIYQAPSEKSLKIVLV-RDVDGKTFWDALDDAISPRIRIPTP-VDESALSTFRSIF-QGRNLMKGTFIFLTWLDPS  224 (279)
Q Consensus       148 ~~~~~ll~~~~~k~Lri~~~-R~v~~~~~~da~~e~l~~~l~~~~~-~~~~~L~~f~~~f-~~~~l~kGd~i~l~~~p~~  224 (279)
                      +||++|+++|++|++||++. +.++.+++++|++|++.+|+++.+. .+.++|++|.++| ++..++|||.|+|+|.|++
T Consensus       284 eFf~DIItap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~g  363 (415)
T PLN03175        284 DFYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDG  363 (415)
T ss_pred             HHHHHHHcCCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCC
Confidence            99999999999999999997 6799999999999999999988754 5677899999999 4678889999999999999


Q ss_pred             eEEEEEeCCCCCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649          225 KMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       225 gl~v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~  279 (279)
                      ++.++++  |   +.+|+|+++.|++|+|++|||++|+||++|++++++|+.|||
T Consensus       364 gLtisIn--G---~~vgvIEnk~L~eALfdiyLGd~PVSPslKeslA~~La~Ll~  413 (415)
T PLN03175        364 QLITEIG--G---NQIGAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGIIR  413 (415)
T ss_pred             ceEEEEC--C---eeeeEeccHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999996  6   568999999999999999999999999999999999999986

>PLN02804 chalcone isomerase

Probab=100.00  E-value=7.7e-42  Score=300.07  Aligned_cols=196  Identities=29%  Similarity=0.497  Sum_probs=183.9

Q ss_pred             ccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhhhhhCCCccccccChhHHHHHhcCCCe
Q 023649           80 ATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSE  159 (279)
Q Consensus        80 ~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~~~~~~~~~el~~~~~~~~~ll~~~~~  159 (279)
                      +.|++||+.++  ++++++.|.|+|+|.+.|.+++||||++|+|+++...++|++|+|++++||.+|.+||++|+++|++
T Consensus         6 v~~v~FP~~i~--~ss~~l~L~G~G~R~~~I~~~~iK~yAiGvYle~~~~~~L~kwkgk~a~EL~~~~~Ff~dlv~~p~e   83 (206)
T PLN02804          6 VEDIPFPPQIT--TSSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEPSVKGHLQSWKGKPGSELAEDDDFFQALIQAPVE   83 (206)
T ss_pred             ecCcCCCceee--cCCCcceEEeecccceEEEeEEEEEEEEEEEecHHHHHHHHHhcCCCHHHHhcCHHHHHHHHcCChh
Confidence            88999999998  4558899999999999999999999999999999877889999999999999999999999999999


Q ss_pred             eEEEEEEEecCChhHHHHHHHHHhchhcCCCCc---ccHHHHHHHHHhcCCCCCCCCCEEEEEEeC-CCeEEEEEeCCCC
Q 023649          160 KSLKIVLVRDVDGKTFWDALDDAISPRIRIPTP---VDESALSTFRSIFQGRNLMKGTFIFLTWLD-PSKMLVSISGDGL  235 (279)
Q Consensus       160 k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~---~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p-~~gl~v~~n~~G~  235 (279)
                      |.+||+++|++++.++++++++++.+||++.+.   +++++|++|.++|++++++||+.|+|+|.| ++.+++.+..+| 
T Consensus        84 k~~Ri~~i~~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~~fp~Gs~I~ft~~~~~g~l~Isfs~dg-  162 (206)
T PLN02804         84 KLIRIVVIKEIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSKYFKKNSIITYHFPATSGIVEISFSTEG-  162 (206)
T ss_pred             hEEEEEEEecCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCCcCCCCCEEEEEecCCCCeEEEEEecCC-
Confidence            999999999999999999999999999999874   568899999999999999999999999998 778999998777 


Q ss_pred             CcccceeeCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhhh
Q 023649          236 PSGVDATIESENVTFALYDVFF-GGAPVSPSLKASVATGLATIL  278 (279)
Q Consensus       236 p~~~~g~I~s~~f~~Alf~iwL-G~~pvsp~lK~~l~~~l~~ll  278 (279)
                      |....+.|+|+.+|+|+|+.|| |++|+||++|++++++|+.+|
T Consensus       163 ~e~~~~~Ienk~l~~avl~~yi~G~~~VSp~~k~slA~~la~~~  206 (206)
T PLN02804        163 KEESKLTVENANVVEMIQKWYLGGENGVSPSTISSVADSIAAEL  206 (206)
T ss_pred             cccceeEEecHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC
Confidence            5456788999999999999999 999999999999999999885

>PLN02559 chalcone--flavonone isomerase

Probab=100.00  E-value=5.8e-41  Score=296.07  Aligned_cols=200  Identities=25%  Similarity=0.389  Sum_probs=189.4

Q ss_pred             ccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhh-hhhCCCccccccChhHHHHHhcCCC
Q 023649           80 ATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGAANIQEDSSLFDTIYQAPS  158 (279)
Q Consensus        80 ~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~-~~~~~~~~el~~~~~~~~~ll~~~~  158 (279)
                      +.+++||+.++.|++++++.|.|+|+|.+.|.++++|+|++|+|+++.....|. +|+|++++||.+|.+||++|+.+|+
T Consensus         9 ve~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~~vKftAiGvYle~~av~~L~~KWKGKsa~EL~~~~~Ff~div~~p~   88 (230)
T PLN02559          9 VEGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAVPSLAKKWKGKTAEELADSVAFFRDVVTGDF   88 (230)
T ss_pred             EcceecCCcccCCCCCCceEEEeccccceEEeeEEEEEEEEEEEechhHHHHHHHhhCCcCHHHHhcCHHHHHHHHcCcc
Confidence            889999999999998899999999999999999999999999999998777776 9999999999999999999999999


Q ss_pred             eeEEEEEEEecCChhHHHHHHHHHhchhcCCCCc---ccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEEEEEeCCCC
Q 023649          159 EKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTP---VDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGL  235 (279)
Q Consensus       159 ~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~---~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~v~~n~~G~  235 (279)
                      +|.+|+++++++++.++.+++.+...++|+..+.   ++.++|++|.++|+++.+++|+.|+|+|.|++.|++.+..||+
T Consensus        89 EK~~rV~~I~~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~~fp~Gs~I~ft~sp~g~L~isfs~dg~  168 (230)
T PLN02559         89 EKFTRVTMILPLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEETFPPGSSILFTHSPTGSLTVAFSKDSS  168 (230)
T ss_pred             hhhEEEEEEEeccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCCCCCCCCEEEEEECCCCcEEEEEecCCC
Confidence            9999999999999999999999999999988864   6788999999999999999999999999999999999986664


Q ss_pred             -CcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649          236 -PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       236 -p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~  279 (279)
                       |....+.|+|+.+|+|+|+.|||++||||++|++++++|+.||+
T Consensus       169 ipe~~~~~Ienk~l~eAv~e~~IG~~~VSP~aK~slA~~la~ll~  213 (230)
T PLN02559        169 VPEVGNAVIENKLLCEAVLESIIGKHGVSPAAKLSLAARLSELLK  213 (230)
T ss_pred             CCccceEEEechHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHh
Confidence             66778999999999999999999999999999999999999985

>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5

Probab=100.00  E-value=2.4e-41  Score=297.42  Aligned_cols=191  Identities=42%  Similarity=0.727  Sum_probs=164.4

Q ss_pred             ccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhh-hhhhCCCcc-ccccChhHHHHHhcCCCeeEE
Q 023649           85 FQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKL-NAWKGKGAA-NIQEDSSLFDTIYQAPSEKSL  162 (279)
Q Consensus        85 FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L-~~~~~~~~~-el~~~~~~~~~ll~~~~~k~L  162 (279)
                      ||.+++.++..++|+|+|+|+|++.  |++||||++|+|+++...+++ ..|.++.++ ++.++++++++|++++++|++
T Consensus         1 FP~~i~~p~~~~~l~L~G~GvR~~~--~~~ikVYavG~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~k~i   78 (199)
T PF02431_consen    1 FPKKITSPTSSEELSLLGAGVRTVS--FLNIKVYAVGLYVDDSDAKKLLKKWKGKSASDDLEKSEDFFDDLLDSPVEKAI   78 (199)
T ss_dssp             EESEEE-TTTSSEEEEEEEEEEEEE--ETEEEEEEEEEEEECCHHHHHHHHHTTT-HHHHHHT-HHHHHHHHHSSS-EEE
T ss_pred             CCCcccCCCCCCCeEEEEEEEeeEE--EEEEEEEEEEEEEChhHhhhHHHhhhcccCcccccccHHHHHHHhcCCccEEE
Confidence            8999999877789999999999976  569999999999999977665 489999887 899999999999999999999


Q ss_pred             EEEEEecCChhHHHHHHHHHhchhcCCCC---cccHHHHHHHHHhcCC-CCCCCCCEEEEEEeCCCeEEEEEeCCCC-Cc
Q 023649          163 KIVLVRDVDGKTFWDALDDAISPRIRIPT---PVDESALSTFRSIFQG-RNLMKGTFIFLTWLDPSKMLVSISGDGL-PS  237 (279)
Q Consensus       163 ri~~~R~v~~~~~~da~~e~l~~~l~~~~---~~~~~~L~~f~~~f~~-~~l~kGd~i~l~~~p~~gl~v~~n~~G~-p~  237 (279)
                      ||+++|+++++||+|+|+++|.+|++..+   .+++++|++|+++|+. ++++|||+|+|+|.|++++.+.++++++ +.
T Consensus        79 ri~~~R~~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~~~~~~~~~~  158 (199)
T PF02431_consen   79 RIVPVRNVDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVSYNGQGKIPG  158 (199)
T ss_dssp             EEEESSSEEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEEEESSSS--S
T ss_pred             EEEEEecCCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEEEecCCCCCc
Confidence            99999999999999999999999997753   3678999999999976 4899999999999999999999984332 23


Q ss_pred             ccceeeCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhh
Q 023649          238 GVDATIESENVTFALYDVFF-GGAPVSPSLKASVATGLATI  277 (279)
Q Consensus       238 ~~~g~I~s~~f~~Alf~iwL-G~~pvsp~lK~~l~~~l~~l  277 (279)
                      +.+|+|+++.|++|||++|| |++|+||++|++++++|++|
T Consensus       159 ~~~g~I~~~~~~~al~~~yL~G~~pvs~~~k~s~~~~l~~l  199 (199)
T PF02431_consen  159 KELGTIKSPRFARALFDIYLSGDKPVSPSLKKSVAEGLASL  199 (199)
T ss_dssp             SECEEEE-HHHHHHHHHHHH-STT-S-HHHHHHHHHHHHHH
T ss_pred             cceeEEcCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcC
Confidence            68999999999999999999 99999999999999999986

5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
4dol_A	217	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		4e-69
1jx0_A	222	Chalcone Isomerase--y106f Mutant Length = 222		1e-06
1eyp_A	222	Chalcone Isomerase Length = 222		2e-06
1jx1_A	222	Chalcone Isomerase--T48a Mutant Length = 222		3e-06
4dok_A	208	Crystal Structure Of Arabidopsis Thaliana Chalcone-		1e-05
4doi_A	246	Crystal Structure Of Arabidopsis Thaliana Chalcone		2e-05

>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At1g53520 (Atfap3) Length = 217

Iteration: 1
 Score =  257 bits (657), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/210 (63%), Positives = 158/210 (75%), Gaps = 1/210 (0%)
Query: 70  VGSAE-YTEEPATKVKFQKXXXXXXXXXXXXXXXTGYREKVFAIIGVKVYAAGLYINQSI 128
           VG+AE Y EE AT VKF++               TG+REK FAIIGVKVYAAG Y+N+SI
Sbjct: 7   VGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESI 66
Query: 129 LSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIR 188
           LS L+AW G+ A  IQ DSSLF +I+QA +EKSL+IVLVRDVDGKTFWDALD+AISPRI+
Sbjct: 67  LSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIK 126
Query: 189 IPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENV 248
            P+  D +ALSTF  IFQ R L KG+ I LTW++ S MLVS+S  GLP+ VDATIES NV
Sbjct: 127 SPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNV 186
Query: 249 TFALYDVFFGGAPVSPSLKASVATGLATIL 278
           T AL+DVFFG +PVSP+LK+SVA  LA  L
Sbjct: 187 TSALFDVFFGDSPVSPTLKSSVANQLAMTL 216

>pdb|1JX0|A Chain A, Chalcone Isomerase--y106f Mutant Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 104 GYREKVFAIIG--VKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEK 160
           G  E+   I G  +K  A G+Y+    ++ L A WKGK +  + E    +  I   P EK
Sbjct: 32  GAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEK 91
Query: 161 SLKIVLVRDVDGKTF-WDALDDAISPRIRIPTPVD--ESALSTFRSIFQGRNLMKGTFIF 217
            ++   +R++ G  F    +++ ++    + T  D    A+  F   F+  N   G  +F
Sbjct: 92  LIRGSKIRELSGPEFSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF 151
Query: 218 LTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLAT 276
                   + +S S D  +P    A IE++ V+ A+ +   G   VSP LK  +A  L  
Sbjct: 152 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPA 211
Query: 277 IL 278
           +L
Sbjct: 212 LL 213

>pdb|1EYP|A Chain A, Chalcone Isomerase Length = 222

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 104 GYREKVFAIIG--VKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEK 160
           G  E+   I G  +K  A G+Y+    ++ L A WKGK +  + E    +  I   P EK
Sbjct: 32  GAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEK 91
Query: 161 SLKIVLVRDVDGKTF-WDALDDAISPRIRIPTPVD--ESALSTFRSIFQGRNLMKGTFIF 217
            ++   +R++ G  +    +++ ++    + T  D    A+  F   F+  N   G  +F
Sbjct: 92  LIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF 151
Query: 218 LTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLAT 276
                   + +S S D  +P    A IE++ V+ A+ +   G   VSP LK  +A  L  
Sbjct: 152 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPA 211
Query: 277 IL 278
           +L
Sbjct: 212 LL 213

>pdb|1JX1|A Chain A, Chalcone Isomerase--T48a Mutant Length = 222

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 104 GYREKVFAIIG--VKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEK 160
           G  E+   I G  +K  A G+Y+    ++ L A WKGK +  + E    +  I   P EK
Sbjct: 32  GAGERGLTIEGNFIKFAAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEK 91
Query: 161 SLKIVLVRDVDGKTF-WDALDDAISPRIRIPTPVD--ESALSTFRSIFQGRNLMKGTFIF 217
            ++   +R++ G  +    +++ ++    + T  D    A+  F   F+  N   G  +F
Sbjct: 92  LIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVF 151
Query: 218 LTWLDPSKMLVSISGD-GLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLAT 276
                   + +S S D  +P    A IE++ V+ A+ +   G   VSP LK  +A  L  
Sbjct: 152 YRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPA 211
Query: 277 IL 278
           +L
Sbjct: 212 LL 213

>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone-Isomerase Like Protein At5g05270 (Atchil) Length = 208

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 115 VKVYAAGLYINQS-ILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGK 173
           VK  A G+Y++ S + + L+ WKGK    +  D   FD +  A  EK +++V+++++ G 
Sbjct: 39  VKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGA 98
Query: 174 TFWDALDDAISPRI 187
            +   L++ +  R+
Sbjct: 99  QYGVQLENTVRDRL 112

>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone Isomerase At3g55120 (Atchi) Length = 246

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 109 VFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLV 167
           +F +IGV       Y+  + +  L+  WKGK    + E    F  I     EK +K+ + 
Sbjct: 57  IFTVIGV-------YLEGNAVPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMK 109
Query: 168 RDVDGKTFWDALDD---AISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPS 224
             + G+ + + + +   AI  ++ + T  +  A+  F  IF+      G+ I        
Sbjct: 110 LPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTG 169
Query: 225 KMLVSIS-GDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
            + V+ S  D +P    A IE++ +  A+ +   G   VSP  + SVA  L+ ++
Sbjct: 170 SLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLM 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	9e-64
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	4e-59
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	7e-59
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	1e-51
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	6e-41
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana} Length = 217

 Score =  198 bits (505), Expect = 9e-64
 Identities = 144/216 (66%), Positives = 175/216 (81%)

Query: 63  KASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGL 122
           K+++SS   + +Y EE AT VKF++S++LPG SSPLSLLGTG+REK FAIIGVKVYAAG 
Sbjct: 1   KSAASSVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGY 60

Query: 123 YINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDA 182
           Y+N+SILS L+AW G+ A  IQ DSSLF +I+QA +EKSL+IVLVRDVDGKTFWDALD+A
Sbjct: 61  YVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEA 120

Query: 183 ISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDAT 242
           ISPRI+ P+  D +ALSTF  IFQ R L KG+ I LTW++ S MLVS+S  GLP+ VDAT
Sbjct: 121 ISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDAT 180

Query: 243 IESENVTFALYDVFFGGAPVSPSLKASVATGLATIL 278
           IES NVT AL+DVFFG +PVSP+LK+SVA  LA  L
Sbjct: 181 IESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 216

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A* Length = 222

 Score =  187 bits (475), Expect = 4e-59
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 72  SAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSK 131
           +A  T      +++   ++ P       L G G R        +K  A G+Y+    ++ 
Sbjct: 2   AASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVAS 61

Query: 132 LNA-WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIR-- 188
           L A WKGK +  + E    +  I   P EK ++   +R++ G  +   + +     ++  
Sbjct: 62  LAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSV 121

Query: 189 -IPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESE 246
                 +  A+  F   F+  N   G  +F        + +S S D  +P    A IE++
Sbjct: 122 GTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENK 181

Query: 247 NVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
            V+ A+ +   G   VSP LK  +A  L  +L 
Sbjct: 182 AVSSAVLETMIGEHAVSPDLKRCLAARLPALLN 214

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana} Length = 246

 Score =  187 bits (475), Expect = 7e-59
 Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 65  SSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYI 124
           + +S       T+     V F  S+  P  S+PL L G G R        V     G+Y+
Sbjct: 6   ACASPSPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYL 65

Query: 125 NQSILSKLNA-WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAI 183
             + +  L+  WKGK    + E    F  I     EK +K+ +   + G+ + + + +  
Sbjct: 66  EGNAVPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENC 125

Query: 184 SPRIR---IPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGV 239
               +   + T  +  A+  F  IF+      G+ I         + V+ S D  +P   
Sbjct: 126 VAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETG 185

Query: 240 DATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279
            A IE++ +  A+ +   G   VSP  + SVA  L+ ++ 
Sbjct: 186 IAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMM 225

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana} Length = 208

 Score =  167 bits (423), Expect = 1e-51
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 95  SSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKL-NAWKGKGAANIQEDSSLFDTI 153
           S PLSLLG G  +     + VK  A G+Y++ S +    + WKGK    +  D   FD +
Sbjct: 19  SKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDAL 78

Query: 154 YQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIR---IPTPVDESALSTFRSIFQGRNL 210
             A  EK +++V+++++ G  +   L++ +  R+         +E+ L      FQ +  
Sbjct: 79  ASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYF 138

Query: 211 MKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGG-APVSPSLKAS 269
              + I   +     +                +E+ NV   +   +  G   VSPS   S
Sbjct: 139 KANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVS 198

Query: 270 VATGLATIL 278
           +A  ++ +L
Sbjct: 199 IADSISAVL 207

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana} Length = 205

 Score =  139 bits (352), Expect = 6e-41
 Identities = 42/212 (19%), Positives = 95/212 (44%), Gaps = 16/212 (7%)

Query: 72  SAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFA-IIGVKVYAAGLYINQSILS 130
           + E   EP T   F  S+          LLG G R+K    +  + VYA G+Y +   + 
Sbjct: 1   ADESVVEPKTGFSFPASIG-----DSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVK 55

Query: 131 KLNA--WKGKGAANIQEDSSLFDTIYQAPSEKSLKIVLVR-DVDGKTFWDALDDAISPRI 187
           KL    +    A+ I+ + S  D + +A  + ++++ +V   ++ ++  +A  +++  R+
Sbjct: 56  KLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRL 115

Query: 188 R-IPTPVDESALSTFRSIF-QGRNLMKGTFIFLTWLDPSKMLVSISGDGLPSGVDATIES 245
           +      ++  L +F S+F     + + + I LT      + V+I G+ +      +++S
Sbjct: 116 KKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHV-----GSVKS 170

Query: 246 ENVTFALYDVFFGGAPVSPSLKASVATGLATI 277
             +  ++ D++ G  P   + +       A++
Sbjct: 171 HLLCRSILDLYIGEEPFDKNAREDFLDNAASL 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 89/253 (35%)

Query: 31  KFAEPHAKSFRNKPCSLLSAFSATRIQPHFTVKASSSSSVGSAEYTEEPATKVKFQKSLS 90
            + E   + + +    + + ++ +R+QP+  ++              +   +++  K++ 
Sbjct: 111 MYIEQRDRLYNDNQ--VFAKYNVSRLQPYLKLR--------------QALLELRPAKNVL 154

Query: 91  LPGYSSPLSLLGTG--------YR-EKVFAIIGVKVYAAGLYIN-------QSILSKLNA 134
           + G      +LG+G            KV   +  K++    ++N       +++L  L  
Sbjct: 155 IDG------VLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQK 204

Query: 135 ----------WKGKGAANI-----QEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDAL 179
                      +   ++NI        + L   +   P E  L +VL  +V     W+A 
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVL-LNVQNAKAWNAF 262

Query: 180 D---------------DAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPS 224
           +               D +S        +D  +++          +     + L +LD  
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKS---LLLKYLD-- 312

Query: 225 KMLVSISGDGLPS 237
                     LP 
Sbjct: 313 -----CRPQDLPR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	100.0
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	100.0
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	100.0
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	100.0
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	100.0

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-52  Score=372.03  Aligned_cols=210  Identities=70%  Similarity=1.064  Sum_probs=195.7

Q ss_pred             CCCCCc-ceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhhhhhCCCccccccCh
Q 023649           69 SVGSAE-YTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDS  147 (279)
Q Consensus        69 ~~~~a~-~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~~~~~~~~~el~~~~  147 (279)
                      ++++++ .++||+|||+||++++.++++++|+|+|+|+|+|+|.|++||||++|||++++..++|++|++++++||.+++
T Consensus         6 ~~~~~~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~glYl~~~~~~~L~~~~~~~~~el~~~~   85 (217)
T 4dol_A            6 SVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDS   85 (217)
T ss_dssp             -----CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSSEEEEEEEEEEECGGGTGGGGGGTTCCHHHHHTCH
T ss_pred             ccCCccceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeeeEEEEEEEEEEcCHHHHHHHHhhcCCCHHHHcccH
Confidence            567766 9999999999999999998778999999999999988999999999999999988899999999999999999


Q ss_pred             hHHHHHhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCCcccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEE
Q 023649          148 SLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKML  227 (279)
Q Consensus       148 ~~~~~ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~  227 (279)
                      +|+++|++++++|+|||+|+|++++++|+++++|+|++|++..+.+++++|++|.++|++++++|||+|+|+|.|+++++
T Consensus        86 ~~~~~il~~~~~k~lri~~~R~i~~~~l~~a~~e~i~~~~~~~~~~~~~~l~~f~~~F~d~~v~kGd~i~~~~~p~~~l~  165 (217)
T 4dol_A           86 SLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNML  165 (217)
T ss_dssp             HHHHHHHHSSSCEEEEEEESSCBCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHTTCCBCTTCEEEEEEEETTEEE
T ss_pred             HHHHHHHcCCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCcCCCCCEEEEEEcCCCCEE
Confidence            99999999999999999999999999999999999999998876567899999999999889999999999999999999


Q ss_pred             EEEeCCCCCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhh
Q 023649          228 VSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL  278 (279)
Q Consensus       228 v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll  278 (279)
                      +++|+||+|.+.+|+|+++.|++|||+||||++|+||+||++|+++|++||
T Consensus       166 i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~  216 (217)
T 4dol_A          166 VSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL  216 (217)
T ss_dssp             EEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence            999866766567899999999999999999999999999999999999997

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}

Probab=100.00  E-value=5.3e-48  Score=347.61  Aligned_cols=214  Identities=23%  Similarity=0.335  Sum_probs=190.4

Q ss_pred             ccccCCCCCCcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhh-hhhCCCccc
Q 023649           64 ASSSSSVGSAEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGAAN  142 (279)
Q Consensus        64 ~~~~~~~~~a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~-~~~~~~~~e  142 (279)
                      +||.+...++..+.  ++||+||++++.|+++++|+|+|+|+|.|.|.+++||||++|||++++..++|. +|+|++++|
T Consensus         7 ~~~~~~~~~~~~v~--V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~~vKvYAiGlYl~~~~~~~L~~kwkgk~~~e   84 (246)
T 4doi_A            7 CASPSPFPAVTKLH--VDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTTEE   84 (246)
T ss_dssp             --------CCCCEE--ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEECTTHHHHHHHHHTTCCHHH
T ss_pred             cccCCCCCccceeE--ECceECCCeeccCCCCCceeEecceeeceeeeeeEEEEEEEEEEechhHHHHhhhhhcCCCHHH
Confidence            34434444566777  999999999999877789999999999999888899999999999999888897 999999999


Q ss_pred             cccChhHHHHHhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCC---cccHHHHHHHHHhcCCCCCCCCCEEEEE
Q 023649          143 IQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPT---PVDESALSTFRSIFQGRNLMKGTFIFLT  219 (279)
Q Consensus       143 l~~~~~~~~~ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~---~~~~~~L~~f~~~f~~~~l~kGd~i~l~  219 (279)
                      |.++.+||++|++++++|+|||+++|++++++++++++|++++||+..+   .+++++|++|.++|+++.+++|+.|+|+
T Consensus        85 L~~~~~ff~~il~~p~eK~lrl~~ir~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~~l~kGs~I~~~  164 (246)
T 4doi_A           85 LTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEETFPPGSSILFA  164 (246)
T ss_dssp             HHHCHHHHHHHHHCSSCEEEEEEESSCEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEE
T ss_pred             hcccHHHHHHHHcCCcceEEEEEEEecCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccCcCCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999986643   2578899999999999889999999999


Q ss_pred             EeCCCeEEEEEeCCCC-CcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649          220 WLDPSKMLVSISGDGL-PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       220 ~~p~~gl~v~~n~~G~-p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~  279 (279)
                      |.|+++++|.+..||+ |....++|+++.||+|+|++|||++|+||++|+++++++++||+
T Consensus       165 ~~p~g~l~i~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll~  225 (246)
T 4doi_A          165 LSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMM  225 (246)
T ss_dssp             ECTTSEEEEEEESSSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHHT
T ss_pred             EeCCCcEEEEEecCCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999965574 43457899999999999999999999999999999999999985

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*

Probab=100.00  E-value=3.2e-47  Score=339.02  Aligned_cols=205  Identities=22%  Similarity=0.343  Sum_probs=188.5

Q ss_pred             CcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhh-hhhCCCccccccChhHHH
Q 023649           73 AEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGAANIQEDSSLFD  151 (279)
Q Consensus        73 a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~-~~~~~~~~el~~~~~~~~  151 (279)
                      ...++  +|||+||++++.|+++++|+|+|+|+|.|+|.+++||||++|||+++...++|. +|+|++++||.+|.+||+
T Consensus         5 ~~~v~--v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~~iKvYa~GlYl~~~~~~~L~~k~kg~~a~el~~~~~f~~   82 (222)
T 1eyq_A            5 ITAIT--VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYR   82 (222)
T ss_dssp             CCCEE--ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHHHHHHHHHTTCCHHHHHTCHHHHH
T ss_pred             cccEE--EcceECCCccccCCCCCceEEeeeEEEEEEeeceEEEEEEEEEEeCHHHhhHhhhhhcCCCHHHhcccHHHHH
Confidence            44566  899999999999877789999999999999888999999999999999888896 899999999999999999


Q ss_pred             HHhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCC---cccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEEE
Q 023649          152 TIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPT---PVDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLV  228 (279)
Q Consensus       152 ~ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~---~~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~v  228 (279)
                      +|++++++|++||+++|++++++|+++++|++++|++..+   .+++++|++|.++|+++.++|||+|+|+|.|++++.+
T Consensus        83 ~li~~~~~k~irl~~i~~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~~~~kG~~i~~~~~p~g~l~i  162 (222)
T 1eyq_A           83 DIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGL  162 (222)
T ss_dssp             HHHHCSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEEEETTTEEEE
T ss_pred             HHHcCCCceEEEEEEEeCCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCCCCCCCCEEEEEEcCCCceEE
Confidence            9999999999999999999999999999999999997543   2567899999999998779999999999999999988


Q ss_pred             EEeCCCC-CcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649          229 SISGDGL-PSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       229 ~~n~~G~-p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~  279 (279)
                      .+..||+ |.+..|+|+++.|++|+|++|||++|+||++|+++++++++||+
T Consensus       163 s~~~~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll~  214 (222)
T 1eyq_A          163 SFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLN  214 (222)
T ss_dssp             EEESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEeCCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Confidence            8765675 44468999999999999999999999999999999999999984

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-45  Score=325.50  Aligned_cols=196  Identities=20%  Similarity=0.354  Sum_probs=178.6

Q ss_pred             CcceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEe-eEEEEEEEEEecCcchh-hhh-hhhCCCccccccChhH
Q 023649           73 AEYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAII-GVKVYAAGLYINQSILS-KLN-AWKGKGAANIQEDSSL  149 (279)
Q Consensus        73 a~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l-~~kVYaagLY~~~~~~~-~L~-~~~~~~~~el~~~~~~  149 (279)
                      ++.++||.|||+||++++.     .++|+|+|+|+|.|.++ +||||++|||+++...+ +|+ +|++++++||.++++|
T Consensus         2 ~~~~vep~tgv~FP~~~~~-----~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~   76 (205)
T 4doo_A            2 DESVVEPKTGFSFPASIGD-----SRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSF   76 (205)
T ss_dssp             -CCEECTTTCCEECSEETT-----TEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTH
T ss_pred             CCccccCCcCCcCCCccCC-----CceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHH
Confidence            5789999999999999984     37999999999876333 79999999999998664 687 8999999999999999


Q ss_pred             HHHHhcCCCeeEEEEEEEe-cCChhHHHHHHHHHhchhcCCCCc-ccHHHHHHHHHhcCC-CCCCCCCEEEEEEeCCCeE
Q 023649          150 FDTIYQAPSEKSLKIVLVR-DVDGKTFWDALDDAISPRIRIPTP-VDESALSTFRSIFQG-RNLMKGTFIFLTWLDPSKM  226 (279)
Q Consensus       150 ~~~ll~~~~~k~Lri~~~R-~v~~~~~~da~~e~l~~~l~~~~~-~~~~~L~~f~~~f~~-~~l~kGd~i~l~~~p~~gl  226 (279)
                      +++|++++++|++||+++| ++++++++++|++++++|+++.+. +++++|++|.++|++ .+++|||+|+|+|.|++++
T Consensus        77 ~~~il~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l  156 (205)
T 4doo_A           77 MDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVL  156 (205)
T ss_dssp             HHHHHHSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEE
T ss_pred             HHHHHcCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcE
Confidence            9999999999999999996 899999999999999999876553 578999999999984 5688999999999999999


Q ss_pred             EEEEeCCCCCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhh
Q 023649          227 LVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATIL  278 (279)
Q Consensus       227 ~v~~n~~G~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll  278 (279)
                      .+++|  |   +.+|+|+++.|++|||+||||++|+||++|++|+++|++|.
T Consensus       157 ~~~~~--g---~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l~  203 (205)
T 4doo_A          157 SVAIE--G---NHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLA  203 (205)
T ss_dssp             EEEET--T---EEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHT
T ss_pred             EEEEC--C---eeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence            99996  7   57999999999999999999999999999999999999984

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=2.8e-45  Score=323.40  Aligned_cols=199  Identities=24%  Similarity=0.443  Sum_probs=181.1

Q ss_pred             cceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCc-chhhhhhhhCCCccccccChhHHHH
Q 023649           74 EYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQS-ILSKLNAWKGKGAANIQEDSSLFDT  152 (279)
Q Consensus        74 ~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~-~~~~L~~~~~~~~~el~~~~~~~~~  152 (279)
                      +.+.  +.||+||++++ .  +++|+|+|+|+|.|.|.+++||||++|||++++ ...+|.+|++++++||.+|.+||++
T Consensus         3 ~~~~--v~gv~FP~~~~-~--~~~L~L~GaGvR~~~I~~~~iKvYa~GlYl~~~~~~~~l~kwk~~~~~eL~~~~~f~~~   77 (208)
T 4dok_A            3 GMVM--VHEVPFPPQII-T--SKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKELAGDDDFFDA   77 (208)
T ss_dssp             CCEE--ETTEEECSEEE-S--SSEEEEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHCGGGTTCCHHHHHTCHHHHHH
T ss_pred             ccEE--EccEECCcccc-C--CCcceeeeeeeeeEeeeeeEEEEEEEEEEecHHHHHHHHhhhcCCCHHHHccchHHHHH
Confidence            4556  89999999998 3  378999999999999888899999999999994 5567889999999999999999999


Q ss_pred             HhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCCc---ccHHHHHHHHHhcCCCCCCCCCEEEEEEeCC-CeEEE
Q 023649          153 IYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTP---VDESALSTFRSIFQGRNLMKGTFIFLTWLDP-SKMLV  228 (279)
Q Consensus       153 ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~---~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~-~gl~v  228 (279)
                      |+++|++|++||+++|++++++++++++|++++||++.+.   +++++|++|.++|+++.++||+.|+|+|.|+ +.|++
T Consensus        78 ii~~p~eK~iri~~ir~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i  157 (208)
T 4dok_A           78 LASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEI  157 (208)
T ss_dssp             HHHSSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHTCEECTTCEEEEEECSSSCCEEE
T ss_pred             HhcCcccceEEEEEEecCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCeEEE
Confidence            9999999999999999999999999999999999987763   5788999999999998999999999999988 67888


Q ss_pred             EEeCCCCCcccceeeCCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhhh
Q 023649          229 SISGDGLPSGVDATIESENVTFALYDVFF-GGAPVSPSLKASVATGLATIL  278 (279)
Q Consensus       229 ~~n~~G~p~~~~g~I~s~~f~~Alf~iwL-G~~pvsp~lK~~l~~~l~~ll  278 (279)
                      .+..||++ ...++|+++.||+|+|++|| |++|+||++|++++++|++||
T Consensus       158 ~~s~~G~~-~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll  207 (208)
T 4dok_A          158 GFETEGKE-EEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL  207 (208)
T ss_dssp             EEECTTSC-CEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHH
T ss_pred             EEEeCCEe-ccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhh
Confidence            87656753 23468999999999999999 999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1eyqa_	212	d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicag	2e-54

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  173 bits (440), Expect = 2e-54
 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 5/202 (2%)

Query: 83  VKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNA-WKGKGAA 141
           +++   ++ P       L G G R        +K  A G+Y+    ++ L A WKGK + 
Sbjct: 10  LEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSE 69

Query: 142 NIQEDSSLFDTIYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIR---IPTPVDESAL 198
            + E    +  I   P EK ++   +R++ G  +   + +     ++        +  A+
Sbjct: 70  ELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAM 129

Query: 199 STFRSIFQGRNLMKGTFIFLTWLDPSKMLVSISGDG-LPSGVDATIESENVTFALYDVFF 257
             F   F+  N   G  +F        + +S S D  +P    A IE++ V+ A+ +   
Sbjct: 130 QKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMI 189

Query: 258 GGAPVSPSLKASVATGLATILK 279
           G   VSP LK  +A  L  +L 
Sbjct: 190 GEHAVSPDLKRCLAARLPALLN 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1eyqa_	212	Chalcone isomerase {Alfalfa (Medicago sativa) [Tax	100.0

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.1e-47  Score=335.94  Aligned_cols=204  Identities=22%  Similarity=0.355  Sum_probs=187.5

Q ss_pred             cceeecccCccccccccCCCCCCcceEEeeEEEeeEEEEeeEEEEEEEEEecCcchhhhh-hhhCCCccccccChhHHHH
Q 023649           74 EYTEEPATKVKFQKSLSLPGYSSPLSLLGTGYREKVFAIIGVKVYAAGLYINQSILSKLN-AWKGKGAANIQEDSSLFDT  152 (279)
Q Consensus        74 ~~v~Ep~tgv~FP~~l~~~~~~~~l~L~G~GvR~k~v~~l~~kVYaagLY~~~~~~~~L~-~~~~~~~~el~~~~~~~~~  152 (279)
                      ..++  +.||+||.+++.++++++|+|+|+|+|+|.|+|++||||++|||+++.+.+.|. +|++++.+|+.++.+++++
T Consensus         3 ~~v~--v~~v~fP~~i~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~GlYl~~~~~~~l~~~~~~k~~~el~~~~~~~~~   80 (212)
T d1eyqa_           3 TAIT--VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRD   80 (212)
T ss_dssp             CCEE--ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHHHHHHHHHTTCCHHHHHTCHHHHHH
T ss_pred             ceEE--ECCccCCCcccCCCCCCceEEeeeEEeeEEEeeeEEEEEEEEEEcccchhHHHhhhhcccchhhhhccHHHHHH
Confidence            3455  679999999999987789999999999999989999999999999999988876 8999999999999999999


Q ss_pred             HhcCCCeeEEEEEEEecCChhHHHHHHHHHhchhcCCCCc---ccHHHHHHHHHhcCCCCCCCCCEEEEEEeCCCeEEEE
Q 023649          153 IYQAPSEKSLKIVLVRDVDGKTFWDALDDAISPRIRIPTP---VDESALSTFRSIFQGRNLMKGTFIFLTWLDPSKMLVS  229 (279)
Q Consensus       153 ll~~~~~k~Lri~~~R~v~~~~~~da~~e~l~~~l~~~~~---~~~~~L~~f~~~f~~~~l~kGd~i~l~~~p~~gl~v~  229 (279)
                      |++++++|++||+++|+++++||++||++++.+|++..+.   +++++|++|+++|++++++|||+|+|+|.|++++.++
T Consensus        81 il~~~~~k~iriv~vr~v~~~~l~dal~e~l~~r~~~~~~~~~~~~~~l~~f~~~F~~~~~~kG~~i~~~~~p~g~l~vs  160 (212)
T d1eyqa_          81 IISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLS  160 (212)
T ss_dssp             HHHCSSCEEEEEEESSCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCEECTTCEEEEEEETTTEEEEE
T ss_pred             HhcCCcceEEEEEEEecCCHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhcCCccCCCCEEEEEECCCCcEEEE
Confidence            9999999999999999999999999999999999866543   4577899999999988899999999999999999999


Q ss_pred             EeCCC-CCcccceeeCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhC
Q 023649          230 ISGDG-LPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK  279 (279)
Q Consensus       230 ~n~~G-~p~~~~g~I~s~~f~~Alf~iwLG~~pvsp~lK~~l~~~l~~ll~  279 (279)
                      +++++ .+.+.+|+|++++|++|+|++|||++|+||++|++++++|++||+
T Consensus       161 ~~~~~~~~~~~~g~I~~~~~~~al~~~yLGd~Pvs~~lK~s~~~~l~~l~~  211 (212)
T d1eyqa_         161 FSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLN  211 (212)
T ss_dssp             EESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCceeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhc
Confidence            97432 244688999999999999999999999999999999999999984