Citrus Sinensis ID: 023654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MATYSSKLPENGPEDEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFLMGEHPKV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHccccEEEEccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHcccEEEEEccccEEEEccccccccHHHHHHccccccccHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHccccEEEEccccEEEEcccccEEccHHHHcccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccHHHHHHHccccEEEEcccccccHHHcccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHccccEEEEEccEEEEEEcccHHcccHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHEEccccccccHEEEcccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEccEEEEEEcccHHcccHHHHHHHHHHHHHHHHHcccccccEccccccc
Coil and Loop (DISEMBL)
matyssklpengpededemmiggELGWVRHLASCDHLVASLssdlariptpdtpcnmckhprgnwlclcckevlcsryvnKHMLRHYREKnhsvaldysdlsVWCFACHAYLNAQAILQLRPVHETSYVLKfgralpfntgqhpkvkeddemmlgaesgsvrhLTSCDHLVASLStdlaripnpdtpcnrcqhprgnwlclcckevlcsRYVNKHMLQHYQETnhsvalgysdlSVWCFACHAYLNAQAILQLQPVHETAYVLKFGralpflmgehpkv
Flexible Loop (DISEMBL)
matyssklpengpedEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRalpflmgehpkv
Low Complexity Region (SEG)
MATYSSKLPENGPEDEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFLMGEHPKV
Disordered region (IsUnstruct)
*******************MIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNT*********************RHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFLM******
Disordered Region (DISOPRED)
**************************WVRHLASCDHLVA**************PCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAY******************
Disordered Region (DISEMBL)
*************EDEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFLMGEHPKV
Disordered Region (DISPRO)
*ATYSSKLPENGPEDEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFLMG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATYSSKLPENGPEDEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFLMGEHPKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9UBN7	1215	Histone deacetylase 6 OS=	yes	no	0.383	0.088	0.405	1e-16
Q9Z2V5	1149	Histone deacetylase 6 OS=	yes	no	0.383	0.093	0.387	2e-14
Q20296	955	Histone deacetylase 6 OS=	yes	no	0.670	0.195	0.252	5e-12
Q54QE6	512	NAD-dependent deacetylase	yes	no	0.261	0.142	0.342	1e-09
Q8C2S0	711	Ubiquitin carboxyl-termin	no	no	0.340	0.133	0.303	8e-09
Q9H0E7	712	Ubiquitin carboxyl-termin	no	no	0.275	0.108	0.358	7e-08
D2HBJ8	711	Ubiquitin carboxyl-termin	no	no	0.236	0.092	0.391	7e-08
Q7ZUM8	695	Ubiquitin carboxyl-termin	no	no	0.275	0.110	0.358	7e-08
Q6P9L4	685	Ubiquitin carboxyl-termin	no	no	0.207	0.084	0.396	2e-07
Q5XGZ2	690	Ubiquitin carboxyl-termin	N/A	no	0.275	0.111	0.346	2e-07

>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 4/111 (3%)

Query: 160  SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
            +V  L  C HLVA      A + +   PC  C   + NW+CL C +V C RY+N HMLQH
Sbjct: 1106 AVTPLPWCPHLVAVCPIPAAGL-DVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH 1164

Query: 220  YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
            +  + H + L Y DLS WC+ C AY++ QA+L ++ +   A+  KFG  +P
Sbjct: 1165 HGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDMP 1212

In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8

>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 160  SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
            +V  L+ C HL+A      A + +   PC  C   + NW+CL C +V CSRYVN HM+ H
Sbjct: 1040 AVTPLSWCPHLMAVCPIPAAGL-DVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCH 1098

Query: 220  YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
            ++ + H + L   DLS WC+ C AY++ +    LQ V   A+  KFG  +P
Sbjct: 1099 HEASEHPLVLSCVDLSTWCYVCQAYVHHE---DLQDVKNAAHQNKFGEDMP 1146

In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 39/226 (17%)

Query: 72  EVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSY-VL 130
           + +C    N+ MLR  RE+    A     +   C         + I ++  V +  + +L
Sbjct: 741 QAVCEVLQNRSMLRRLREEKEQFATKPQKIESSCI--------KTIREVCAVQQKYWSIL 792

Query: 131 KFGRALPFNTG--------------------------QHPKVKEDDEMMLGAESGSVRHL 164
           K  +  P N G                             +   + E+M    + +V  L
Sbjct: 793 KGFQVTPSNYGLDIDDEAYDDDSIDMADQSSSSGSSSSSTRPSHNLEIMDSGPAHAVVPL 852

Query: 165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETN 224
            +C HL        A+I N  T C+ CQ     W CL C +  C R+VN+H + H+  ++
Sbjct: 853 ATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSS 911

Query: 225 HSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
           H +AL  +DLSVWC+ C +Y++  A++  +     A+  KFG  +P
Sbjct: 912 HPMALSMADLSVWCYPCDSYVHNPALIGAK---SAAHESKFGETMP 954

Probable histone deacetylase. Histone deacetylases are responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 186 TPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
           T C+ C     NW+C+ C  V CSR+VN H  +H++ T H ++  +SD S WC+ C  Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

Query: 246 NAQAILQLQPVHE 258
           +   +  +  + E
Sbjct: 92  HNTPLFDICEILE 104

NAD-dependent deacetylase, which plays an important role in the regulation of transcriptional repression.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44 PE=2 SV=3

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 55  CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
           C +C      W CL C  V C +Y+ +H L+H++E +H VA + +D+  +C+ C+ Y LN
Sbjct: 26  CMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYVLN 85

Query: 114 AQAILQLRPVHETSYVLKFGR---ALPFNTGQHPKVKED 149
             A   L+ +  T   +K  +    +P ++  HP   +D
Sbjct: 86  DNAAGDLKSLRSTLSTIKSKKYPCVVPSDSVLHPVDAQD 124

Mus musculus (taxid: 10090)

>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY-LN 246
           C  C      W CL C  V C RY+ +H L+H+QE++H VAL  +++ V+C+ C  Y LN
Sbjct: 29  CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88

Query: 247 AQAILQLQPVHETAYVLK 264
                 L+ +  T   +K
Sbjct: 89  DNTTGDLKLLRRTLSAIK 106

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of CDC20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C). Deubiquitination of CDC20 leads to stabilize the MAD2L1-CDC20-APC/C ternary complex (also named mitotic checkpoint), thereby preventing premature activation of the APC/C.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca GN=USP44 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL-- 245
           C  C      W CL C  V C RY+ +H L+H+QE++H VAL  +++ V+C+ C  Y+  
Sbjct: 29  CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLN 88

Query: 246 -NAQAILQL 253
            NA   L+L
Sbjct: 89  DNATGDLKL 97

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of CDC20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C). Deubiquitination of CDC20 leads to stabilize the MAD2L1-CDC20-APC/C ternary complex (also named mitotic checkpoint), thereby preventing premature activation of the APC/C.

Ailuropoda melanoleuca (taxid: 9646)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 55  CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
           C  C      W CL C  V C RY+ +H L+H++E++H +AL+ ++L V+C+ C  Y LN
Sbjct: 26  CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYVLN 85

Query: 114 AQAILQLRPVHETSYVLK 131
             A   L+ +  T   +K
Sbjct: 86  DNATGDLKLLRSTLSAIK 103

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
           C +C      W CL C  V C RY+  H L+H++ET H +A+   DL V+C+ C  Y+
Sbjct: 26  CLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis GN=usp44-b PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 55  CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAY-LN 113
           C  C      W CL C  V C RY+ +H LRH+++  H +AL+ ++L V+C+ C  Y LN
Sbjct: 26  CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85

Query: 114 AQAILQLRPVHETSYVLK 131
                 L+ +  T   +K
Sbjct: 86  DNTTGDLKLLRSTLSAIK 103

Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
225428959	154	PREDICTED: histone deacetylase 6-like [V	0.440	0.798	0.725	4e-47
296083068	153	unnamed protein product [Vitis vinifera]	0.440	0.803	0.725	4e-47
255573133	159	histone deacetylase hda2, putative [Rici	0.458	0.805	0.694	2e-45
224105697	160	predicted protein [Populus trichocarpa]	0.455	0.793	0.679	3e-45
449469124	146	PREDICTED: histone deacetylase 6-like [C	0.437	0.835	0.666	3e-43
357480677	140	Histone deacetylase [Medicago truncatula	0.483	0.964	0.630	9e-42
51971481	146	unnamed protein product [Arabidopsis tha	0.440	0.842	0.637	2e-39
238479248	146	Regulator of Vps4 activity in the MVB pa	0.440	0.842	0.637	2e-39
26984073	140	hypothetical protein [Arabidopsis thalia	0.440	0.878	0.629	6e-39
357150533	188	PREDICTED: histone deacetylase 6-like [B	0.476	0.707	0.523	2e-36

>gi|225428959|ref|XP_002263779.1| PREDICTED: histone deacetylase 6-like [Vitis vinifera]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 105/124 (84%), Gaps = 1/124 (0%)

Query: 148 EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVL 207
           ED+E + GAESG V   TSCDHL ASLS+DL  IP P+TPCNRC +P  NWLCLCCKEVL
Sbjct: 18  EDEEFLYGAESGWVEARTSCDHL-ASLSSDLVHIPTPETPCNRCHNPSENWLCLCCKEVL 76

Query: 208 CSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGR 267
           CSR+VNKHML+HYQ+ NH +AL YSDLS+WCF+C AYL+AQAILQL PV+ETAY+LKFG+
Sbjct: 77  CSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAILQLHPVYETAYILKFGQ 136

Query: 268 ALPF 271
           A PF
Sbjct: 137 APPF 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083068|emb|CBI22472.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 105/124 (84%), Gaps = 1/124 (0%)

Query: 148 EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVL 207
           ED+E + GAESG V   TSCDHL ASLS+DL  IP P+TPCNRC +P  NWLCLCCKEVL
Sbjct: 17  EDEEFLYGAESGWVEARTSCDHL-ASLSSDLVHIPTPETPCNRCHNPSENWLCLCCKEVL 75

Query: 208 CSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGR 267
           CSR+VNKHML+HYQ+ NH +AL YSDLS+WCF+C AYL+AQAILQL PV+ETAY+LKFG+
Sbjct: 76  CSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAILQLHPVYETAYILKFGQ 135

Query: 268 ALPF 271
           A PF
Sbjct: 136 APPF 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573133|ref|XP_002527496.1| histone deacetylase hda2, putative [Ricinus communis] gi|223533136|gb|EEF34894.1| histone deacetylase hda2, putative [Ricinus communis]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 107/131 (81%), Gaps = 3/131 (2%)

Query: 143 HPKVKEDDEMML--GAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLC 200
           H  ++EDDE+M   G+ESG V   TSCDHL  SLS+DL+ I  PDTPC+RCQHP  NWLC
Sbjct: 16  HLGLEEDDELMTVYGSESGWVEAKTSCDHL-GSLSSDLSHISTPDTPCHRCQHPSENWLC 74

Query: 201 LCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETA 260
           L CK+VLCSR+VNKHMLQHY +T+H VAL YSDLSVWCFAC AYL+AQ I+QL+PV+ETA
Sbjct: 75  LSCKDVLCSRFVNKHMLQHYHQTHHCVALSYSDLSVWCFACDAYLDAQVIMQLRPVYETA 134

Query: 261 YVLKFGRALPF 271
           Y+LKFG A PF
Sbjct: 135 YILKFGEAPPF 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105697|ref|XP_002313903.1| predicted protein [Populus trichocarpa] gi|118483848|gb|ABK93815.1| unknown [Populus trichocarpa] gi|222850311|gb|EEE87858.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 105/128 (82%), Gaps = 1/128 (0%)

Query: 144 PKVKEDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCC 203
           P  ++D+  M GAESG V   TSCDHL ASLS+DLA IP PDTPCNRCQHP  NWLCL C
Sbjct: 15  PGFEDDENDMYGAESGWVEARTSCDHL-ASLSSDLAHIPTPDTPCNRCQHPSENWLCLSC 73

Query: 204 KEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVL 263
           K+VLCSR+VNKHMLQH+ +T+H +AL YSDLS+WCFAC +YL+A+ I+QL+PV ETA++L
Sbjct: 74  KDVLCSRFVNKHMLQHFHQTSHCLALSYSDLSIWCFACDSYLDARVIIQLKPVSETAHIL 133

Query: 264 KFGRALPF 271
           KFG A PF
Sbjct: 134 KFGEAPPF 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469124|ref|XP_004152271.1| PREDICTED: histone deacetylase 6-like [Cucumis sativus] gi|449484341|ref|XP_004156856.1| PREDICTED: histone deacetylase 6-like [Cucumis sativus]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 149 DDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLC 208
           ++E++ GA SG V+ LTSCDHL ASLS+DLA IP P TPC++CQ+P+ NW+CLCCK+V C
Sbjct: 24  EEELLYGAGSGWVQALTSCDHL-ASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFC 82

Query: 209 SRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRA 268
           SR+VNKHMLQHY+++ H +AL YSDLSVWCF+C AYL+AQ I +L+PVHE AY+LKFG A
Sbjct: 83  SRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEA 142

Query: 269 LPF 271
            PF
Sbjct: 143 PPF 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480677|ref|XP_003610624.1| Histone deacetylase [Medicago truncatula] gi|355511959|gb|AES93582.1| Histone deacetylase [Medicago truncatula] gi|388516653|gb|AFK46388.1| unknown [Medicago truncatula]

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 104/138 (75%), Gaps = 3/138 (2%)

Query: 1   MATYSSKLPENGPEDEDEMMI-GGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCK 59
           MA+ SS+ PE G  +ED  +I G + GWV    SC HL  SLS+DL  IPTPDTPCN C+
Sbjct: 1   MASSSSQ-PEGGLSEEDYDLIHGSQSGWVDARTSCHHL-HSLSNDLTHIPTPDTPCNRCQ 58

Query: 60  HPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQ 119
           HP  NWLCL CK+VLC R+VN+HML+H+RE NHSVAL +SDLSVWCF+C AYL+AQ I Q
Sbjct: 59  HPSENWLCLSCKDVLCGRFVNRHMLQHFRETNHSVALSFSDLSVWCFSCDAYLDAQVIQQ 118

Query: 120 LRPVHETSYVLKFGRALP 137
           LRPVHE +Y+LKF    P
Sbjct: 119 LRPVHEVAYILKFDEPPP 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971481|dbj|BAD44405.1| unnamed protein product [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 96/124 (77%), Gaps = 1/124 (0%)

Query: 148 EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVL 207
           E  + +LGA SG V    +CDHL  +LS DL  +P PDTPC+RCQ+P  NWLCLCCKEVL
Sbjct: 21  ETQDWILGAGSGWVEARKTCDHL-NTLSPDLLHLPTPDTPCSRCQNPVENWLCLCCKEVL 79

Query: 208 CSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGR 267
           CSR+VN+HML H+Q+T H +AL YSDLSVWCF C AYL+AQ ILQL+P+H+ AY+LKFG 
Sbjct: 80  CSRFVNRHMLTHHQQTGHCLALSYSDLSVWCFCCEAYLDAQIILQLRPIHQAAYILKFGE 139

Query: 268 ALPF 271
           A P 
Sbjct: 140 APPL 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479248|ref|NP_001154518.1| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] gi|330251244|gb|AEC06338.1| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 96/124 (77%), Gaps = 1/124 (0%)

Query: 148 EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVL 207
           E  + +LGA SG V    +CDHL  +LS DL  +P PDTPC+RCQ+P  NWLCLCCKEVL
Sbjct: 21  ETQDWILGAGSGWVEARKTCDHL-NTLSPDLLHLPTPDTPCSRCQNPVENWLCLCCKEVL 79

Query: 208 CSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGR 267
           CSR+VN+HML H+Q+T H +AL YSDLSVWCF C AYL+AQ ILQL+P+H+ AY+LKFG 
Sbjct: 80  CSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAYLDAQIILQLRPIHQAAYILKFGE 139

Query: 268 ALPF 271
           A P 
Sbjct: 140 APPL 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26984073|gb|AAN85200.1| hypothetical protein [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 148 EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVL 207
           E  + +LGA SG V    +CDHL  +LS DL  +P PDTPC+RCQ+P  NWLCLCCKEVL
Sbjct: 15  ETQDWILGAGSGWVEARKTCDHL-NTLSPDLLHLPTPDTPCSRCQNPVENWLCLCCKEVL 73

Query: 208 CSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGR 267
           CSR+VN+HML H+Q+T H +AL YSDLSVWCF C  YL+AQ ILQL+P+H+ AY+LKFG 
Sbjct: 74  CSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCETYLDAQIILQLRPIHQAAYILKFGE 133

Query: 268 ALPF 271
           A P 
Sbjct: 134 APPL 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357150533|ref|XP_003575491.1| PREDICTED: histone deacetylase 6-like [Brachypodium distachyon]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 102/147 (69%), Gaps = 14/147 (9%)

Query: 139 NTGQHPKVKEDDE-----------MMLGAESGSVRHLTSCDHLVA---SLSTDLARIPNP 184
           + G+    KE+D+            + GA SG V   TSC HL A   + + +LAR+P+P
Sbjct: 22  DGGEESNRKEEDQGTAVAEGDVDLELYGAASGWVEARTSCPHLSAMPAAGADELARVPSP 81

Query: 185 DTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAY 244
           D+ C+RC HP  NWLCL CK+VLCSR++NKHML HYQE  H +AL +SDLSVWCFAC +Y
Sbjct: 82  DSQCSRCHHPSENWLCLICKDVLCSRFINKHMLCHYQEMGHCIALSFSDLSVWCFACDSY 141

Query: 245 LNAQAILQLQPVHETAYVLKFGRALPF 271
           L+AQ+IL+L+PV+E A++LKFG   PF
Sbjct: 142 LDAQSILELRPVYEVAHLLKFGERPPF 168

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
ZFIN|ZDB-GENE-030131-3232	1081	hdac6 "histone deacetylase 6"	0.412	0.106	0.373	4.4e-18
UNIPROTKB|Q9UBN7	1215	HDAC6 "Histone deacetylase 6"	0.383	0.088	0.405	3.9e-19
UNIPROTKB|B4DZH6	1229	HDAC6 "Histone deacetylase 6"	0.383	0.087	0.405	4.1e-19
UNIPROTKB|I3LEZ7	1130	HDAC6 "Uncharacterized protein	0.383	0.094	0.387	2.9e-18
UNIPROTKB|F1MQP3	1128	HDAC6 "Uncharacterized protein	0.412	0.101	0.382	4.7e-18
MGI|MGI:1333752	1149	Hdac6 "histone deacetylase 6"	0.383	0.093	0.387	4.9e-18
UNIPROTKB|F1LSE3	1155	Hdac6 "Protein Hdac6" [Rattus	0.390	0.094	0.389	2.1e-17
UNIPROTKB|F1PN11	1157	HDAC6 "Uncharacterized protein	0.383	0.092	0.387	2.7e-17
FB|FBgn0026428	1138	HDAC6 "HDAC6" [Drosophila mela	0.437	0.107	0.363	9e-17
UNIPROTKB|G8JYB7	138	hda-6 "Protein HDA-6, isoform	0.412	0.833	0.347	2.3e-16

ZFIN|ZDB-GENE-030131-3232 hdac6 "histone deacetylase 6" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 47/126 (37%), Positives = 71/126 (56%)

Query:    15 DEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVL 74
             D D M +   L W  HL S   + A    D+ +      PC  C     NW+CL C +VL
Sbjct:   966 DVDTMYVVDPLPWCPHLESVRPVPAG-GIDVFQ------PCEECGGEAENWICLFCYKVL 1018

Query:    75 CSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGR 134
             C RYVN+HM+ H +E  H V L ++DLSVWC+AC +Y++ + + + +     ++++KFG 
Sbjct:  1019 CGRYVNQHMVTHGQESGHPVVLSFADLSVWCYACESYVHNKVLHEAK---NAAHLVKFGE 1075

Query:   135 AL-PFN 139
              + PFN
Sbjct:  1076 GIHPFN 1081

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006476 "protein deacetylation" evidence=IGI

GO:0001525 "angiogenesis" evidence=IGI;IMP

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9UBN7 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 45/111 (40%), Positives = 64/111 (57%)

Query:   160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
             +V  L  C HLVA      A + +   PC  C   + NW+CL C +V C RY+N HMLQH
Sbjct:  1106 AVTPLPWCPHLVAVCPIPAAGL-DVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH 1164

Query:   220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
             +  + H + L Y DLS WC+ C AY++ QA+L ++ +   A+  KFG  +P
Sbjct:  1165 HGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDMP 1212

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0097372 "NAD-dependent histone deacetylase activity (H3-K18 specific)" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=ISS;IDA

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS

GO:0019899 "enzyme binding" evidence=ISS

GO:0016575 "histone deacetylation" evidence=ISS;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0090042 "tubulin deacetylation" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0004407 "histone deacetylase activity" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006476 "protein deacetylation" evidence=IMP

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IMP

GO:0043242 "negative regulation of protein complex disassembly" evidence=IMP

GO:0060632 "regulation of microtubule-based movement" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IMP

GO:0045861 "negative regulation of proteolysis" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0070848 "response to growth factor stimulus" evidence=IMP

GO:0016234 "inclusion body" evidence=IDA

GO:0016236 "macroautophagy" evidence=IMP

GO:0035967 "cellular response to topologically incorrect protein" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0032418 "lysosome localization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0043014 "alpha-tubulin binding" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IMP

GO:0005901 "caveola" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0051354 "negative regulation of oxidoreductase activity" evidence=IC

GO:0010727 "negative regulation of hydrogen peroxide metabolic process" evidence=IC

GO:0070842 "aggresome assembly" evidence=IMP

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IMP

GO:0051788 "response to misfolded protein" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0030286 "dynein complex" evidence=IDA

GO:0010033 "response to organic substance" evidence=IMP

GO:0009636 "response to toxic substance" evidence=IMP

GO:0009967 "positive regulation of signal transduction" evidence=IMP

GO:0010469 "regulation of receptor activity" evidence=IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=TAS

GO:0048156 "tau protein binding" evidence=IDA

GO:0070846 "Hsp90 deacetylation" evidence=IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IMP

GO:0070840 "dynein complex binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|B4DZH6 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
 Identities = 45/111 (40%), Positives = 64/111 (57%)

Query:   160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
             +V  L  C HLVA      A + +   PC  C   + NW+CL C +V C RY+N HMLQH
Sbjct:  1120 AVTPLPWCPHLVAVCPIPAAGL-DVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH 1178

Query:   220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
             +  + H + L Y DLS WC+ C AY++ QA+L ++ +   A+  KFG  +P
Sbjct:  1179 HGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDMP 1226

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LEZ7 HDAC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 234 (87.4 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 43/111 (38%), Positives = 66/111 (59%)

Query:   160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
             +V  L  C H+VA      A + +   PC  C   + NW+CL C +V C RY+N HMLQH
Sbjct:  1021 AVSPLLWCPHVVAVRPVPEAGL-DVTQPCQDCGALQENWVCLSCYQVCCGRYINAHMLQH 1079

Query:   220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
             ++ + H + L Y+DLS WC+ C AY++ +A+L ++ +   A+  KFG  +P
Sbjct:  1080 HESSGHPMVLSYADLSTWCYPCQAYVHHEALLAVKNI---AHQNKFGEGVP 1127

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1MQP3 HDAC6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 47/123 (38%), Positives = 69/123 (56%)

Query:   148 EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVL 207
             + DE+M  A    VR L  C HL A        + N   PC  C   + NW+CL C +V 
Sbjct:  1011 DTDEVMFYA----VRPLLWCPHLAAVCPIPETGL-NVTQPCQDCGTLQENWVCLSCYQVY 1065

Query:   208 CSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGR 267
             C RY+N HMLQH++ + H + L Y+DLS WC+ C AY++ + +L ++ +   A+  KFG 
Sbjct:  1066 CGRYINAHMLQHHEGSGHPLVLSYADLSAWCYHCQAYVHHKDLLAVKNI---AHQNKFGE 1122

Query:   268 ALP 270
              +P
Sbjct:  1123 DIP 1125

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1333752 Hdac6 "histone deacetylase 6" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
 Identities = 43/111 (38%), Positives = 62/111 (55%)

Query:   160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
             +V  L+ C HL+A      A + +   PC  C   + NW+CL C +V CSRYVN HM+ H
Sbjct:  1040 AVTPLSWCPHLMAVCPIPAAGL-DVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCH 1098

Query:   220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
             ++ + H + L   DLS WC+ C AY++ +    LQ V   A+  KFG  +P
Sbjct:  1099 HEASEHPLVLSCVDLSTWCYVCQAYVHHE---DLQDVKNAAHQNKFGEDMP 1146

GO:0000118 "histone deacetylase complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0003779 "actin binding" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005874 "microtubule" evidence=ISO

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0005901 "caveola" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006476 "protein deacetylation" evidence=ISO;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IGI;IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0009967 "positive regulation of signal transduction" evidence=ISO

GO:0010033 "response to organic substance" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISO

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=ISO

GO:0016234 "inclusion body" evidence=ISO

GO:0016235 "aggresome" evidence=ISO

GO:0016236 "macroautophagy" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0031252 "cell leading edge" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0032129 "histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0032418 "lysosome localization" evidence=ISO

GO:0034739 "histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=ISO

GO:0035967 "cellular response to topologically incorrect protein" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0042903 "tubulin deacetylase activity" evidence=ISO;IDA

GO:0043014 "alpha-tubulin binding" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0043241 "protein complex disassembly" evidence=IGI

GO:0043242 "negative regulation of protein complex disassembly" evidence=ISO

GO:0045861 "negative regulation of proteolysis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0048156 "tau protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0051788 "response to misfolded protein" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0070201 "regulation of establishment of protein localization" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO

GO:0070840 "dynein complex binding" evidence=ISO

GO:0070842 "aggresome assembly" evidence=ISO;IGI

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=ISO

GO:0070846 "Hsp90 deacetylation" evidence=ISO;IMP

GO:0070848 "response to growth factor stimulus" evidence=ISO

GO:0070932 "histone H3 deacetylation" evidence=IEA

GO:0070933 "histone H4 deacetylation" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=ISO

GO:0090042 "tubulin deacetylation" evidence=ISO;IDA;IMP

UNIPROTKB|F1LSE3 Hdac6 "Protein Hdac6" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 44/113 (38%), Positives = 63/113 (55%)

Query:   160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
             +V  L+ C HL+A      A + +   PC  C   + NW+CL C +V CSRYVN HM+ H
Sbjct:  1046 AVTPLSWCPHLMAVCPIPAAGL-DVSQPCKTCGSVQENWVCLTCYQVYCSRYVNAHMVCH 1104

Query:   220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPFL 272
             ++ + H + L   DLS WC+ C AY++ +    LQ V   A+  KFG  +P L
Sbjct:  1105 HEASEHPLVLSCVDLSTWCYLCQAYVHHE---DLQDVKNAAHQNKFGEGMPHL 1154

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1PN11 HDAC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 43/111 (38%), Positives = 65/111 (58%)

Query:   160 SVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQH 219
             +V  L  C HLVA      + + +   PC  C   + NW+CL C +V C RY++ HML H
Sbjct:  1048 AVTPLPWCPHLVAVCPIPESGL-DVTQPCQDCGVLQENWVCLSCYQVYCGRYISAHMLHH 1106

Query:   220 YQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
             ++++ H + L Y DLS WC+ C AY++ QA+L ++ V   A+  KFG  +P
Sbjct:  1107 HEDSGHPLVLSYVDLSTWCYNCEAYVHHQALLDVKNV---AHQNKFGEDMP 1154

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 9.0e-17, P = 9.0e-17
 Identities = 48/132 (36%), Positives = 68/132 (51%)

Query:   140 TGQHPKVK---------EDDEMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNR 190
             +G  PKVK         E+ E +  +E  +V  L +C HL      +  R  +    C+ 
Sbjct:   960 SGSKPKVKVKTLSDYLAENKEALEQSEMFAVYPLKTCPHLRLLRPEEAPRSLDSGAECSV 1019

Query:   191 CQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAI 250
             C     NW+CL C+ V C RYVN HM QH  E  H +A+  +DLSVWC+AC AY++   +
Sbjct:  1020 CGSTGENWVCLSCRHVACGRYVNAHMEQHSVEEQHPLAMSTADLSVWCYACSAYVDHPRL 1079

Query:   251 LQ-LQPVHETAY 261
                L P+HE  +
Sbjct:  1080 YAYLNPLHEDKF 1091

GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS

GO:0016575 "histone deacetylation" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0022904 "respiratory electron transport chain" evidence=IDA

UNIPROTKB|G8JYB7 hda-6 "Protein HDA-6, isoform d" [Caenorhabditis elegans (taxid:6239)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/121 (34%), Positives = 66/121 (54%)

Query:   151 EMMLGAESGSVRHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSR 210
             E+M    + +V  L +C HL        A+I N  T C+ CQ     W CL C +  C R
Sbjct:    22 EIMDSGPAHAVVPLATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCYKYNCGR 80

Query:   211 YVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQPV-HETAYVLKFGRAL 269
             +VN+H + H+  ++H +AL  +DLSVWC+ C +Y++  A++  +   HE+    KFG  +
Sbjct:    81 FVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAKSAAHES----KFGETM 136

Query:   270 P 270
             P
Sbjct:   137 P 137

GO:0006476 "protein deacetylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam02148	63	pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas	2e-14
pfam02148	63	pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas	3e-14
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	5e-11
smart00290	50	smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H	1e-07
smart00290	50	smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H	1e-07
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	3e-07

>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 25/58 (43%), Positives = 31/58 (53%)

Query: 55  CNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYL 112
           C+ C      WLCL C  V C RY N H L+HY E  H +A+      VWC+AC  Y+
Sbjct: 1   CSECGSTENLWLCLTCGHVGCGRYSNGHALKHYEETGHPLAVSLETGRVWCYACDDYV 58

Length = 63

>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 26/58 (44%), Positives = 33/58 (56%)

Query: 188 CNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYL 245
           C+ C      WLCL C  V C RY N H L+HY+ET H +A+      VWC+AC  Y+
Sbjct: 1   CSECGSTENLWLCLTCGHVGCGRYSNGHALKHYEETGHPLAVSLETGRVWCYACDDYV 58

Length = 63

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 41/208 (19%), Positives = 63/208 (30%), Gaps = 40/208 (19%)

Query: 66  LCLCCKEVLCSRYVNKHM-LRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLR--- 121
           +CL C +  C ++   H+  +      H +    +DL           N +  L+     
Sbjct: 40  VCLNCFQSFCEKHRGIHLGTKSGCRTVHDIKETIADLGPKQENVEENNNKKIKLKNAELS 99

Query: 122 --PVHETSYVLKFGRALPFNTGQHPKVKEDDEMMLGAES--------GSVRHLTSCDHLV 171
              V E   V +   +   ++       E  E M  A                 +C H  
Sbjct: 100 EEDVEELRRVPRTVLSKSTDSDISSTALEKIERMEIAIKPGDEDERVLWRDEEVTCVHGC 159

Query: 172 ASLSTDLARIPNPDTP--------CNRCQHPRGNWLCLCCKEVLCSRYV-----NKHMLQ 218
                                   C+ C      W+CL C  V C R       N H L 
Sbjct: 160 --------NEGPSSIEMGNIGGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALS 211

Query: 219 HYQETNHSVA-----LGYSDLSVWCFAC 241
           HY+ET H +A     L   D  ++C+ C
Sbjct: 212 HYEETQHPLAVKLPSLSKEDCDIYCYLC 239

Length = 749

>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 187 PCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSV 236
            C+ C      WLCL C +V C RY N H L+H++ET H + +      V
Sbjct: 1   RCSVCGTIENLWLCLTCGQVGCGRYQNGHALEHFEETGHPLVVKLGTQRV 50

Length = 50

>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 54  PCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSV 103
            C++C      WLCL C +V C RY N H L H+ E  H + +      V
Sbjct: 1   RCSVCGTIENLWLCLTCGQVGCGRYQNGHALEHFEETGHPLVVKLGTQRV 50

Length = 50

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 13  PEDEDEMMIGGELGWVRHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKE 72
           P DEDE ++     W     +C H      S +         C++C      W+CL C  
Sbjct: 139 PGDEDERVL-----WRDEEVTCVHGCNEGPSSIEMGNIGGLKCSLCDLKTNLWVCLSCGY 193

Query: 73  VLCSRYV-----NKHMLRHYREKNHSVA-----LDYSDLSVWCFAC 108
           V C R       N H L HY E  H +A     L   D  ++C+ C
Sbjct: 194 VGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLC 239

Length = 749

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	100.0
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.96
PF02148	63	zf-UBP: Zn-finger in ubiquitin-hydrolases and othe	99.83
PF02148	63	zf-UBP: Zn-finger in ubiquitin-hydrolases and othe	99.79
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	99.73
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.65
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	99.64
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.5
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.46
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	99.41
smart00290	50	ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like	99.41
KOG1873	877	consensus Ubiquitin-specific protease [Posttransla	99.35
smart00290	50	ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like	99.27
KOG1873	877	consensus Ubiquitin-specific protease [Posttransla	99.07
KOG2026	442	consensus Spindle pole body protein - Sad1p [Cytos	96.98
KOG2026	442	consensus Spindle pole body protein - Sad1p [Cytos	96.13
PF09416	152	UPF1_Zn_bind: RNA helicase (UPF2 interacting domai	86.27
KOG1867	492	consensus Ubiquitin-specific protease [Posttransla	82.44

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-33  Score=277.97  Aligned_cols=188  Identities=23%  Similarity=0.446  Sum_probs=153.2

Q ss_pred             CCCCCCCC----CCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccchhhhhhccccchh
Q 023654           51 PDTPCNMC----KHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHET  126 (279)
Q Consensus        51 ~~~~C~~C----~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~l~~~~~~  126 (279)
                      ...+|.+|    ...+|+++||.|+..+++.    |++.|+.+|+|++++++++.                  .+...+.
T Consensus        23 ~kdeC~ycf~sp~~e~glyicl~~f~afg~~----~v~~~f~~tg~~~yl~i~r~------------------~k~k~~~   80 (763)
T KOG0944|consen   23 YKDECAYCFDSPESEGGLYICLNCFLAFGRE----HVEEYFRKTGHSVYLHIARV------------------KKIKEEG   80 (763)
T ss_pred             ehhhceeeccCCCCCCCEEeehhhhhhhhhH----HHHHHHhhcCceEEEEeccc------------------cchhhcc
Confidence            46799999    4678999999999998764    99999999999999999822                  2222221


Q ss_pred             hhhhhhccCCCCCCCCCccccc-cchhhh-----------------------------------------cccccccccc
Q 023654          127 SYVLKFGRALPFNTGQHPKVKE-DDEMML-----------------------------------------GAESGSVRHL  164 (279)
Q Consensus       127 ~~~~~fg~~~~~~~~kl~i~~~-~~e~~~-----------------------------------------~~~~~~~~~~  164 (279)
                          .-|..+..|+++|+|+++ .-+|.|                                         ..+.+|+.++
T Consensus        81 ----~~~~~p~~K~tkl~i~~d~e~~d~~~iv~~p~~~~~~i~n~~~~~~i~~~~e~i~a~~sa~~~~~k~~~~aWd~Ev  156 (763)
T KOG0944|consen   81 ----AEGAEPKRKITKLEIGEDLECEDVYDIVVVPDDLEIAIKNIQLLPEIVSATEAIEAMLSAISPSRKDRVNAWDNEV  156 (763)
T ss_pred             ----CcCCCccccceeEEeccccccceeEEEEEeccccccccCCccccHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhe
Confidence                112467778999999987 335655                                         1467899998


Q ss_pred             ccchhhhhhhccc--ccCCCCCCCCCCCCCCCCCeeeecccCceecccC------CChHHHHHhhhcCCeeEEeCCCc--
Q 023654          165 TSCDHLVASLSTD--LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRY------VNKHMLQHYQETNHSVALGYSDL--  234 (279)
Q Consensus       165 ~~C~Hl~~~l~~~--~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~------~~~Ha~~H~~~~~H~l~v~l~t~--  234 (279)
                      ..+++-...|.|.  ...+++..|+|+.|++..|||+||+||.|||||.      +|+||+.||++|+||++|+|+|+  
T Consensus       157 r~v~k~~~nl~q~dng~~~~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~  236 (763)
T KOG0944|consen  157 RTVSKHANNLSQIDNGKRIPPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISP  236 (763)
T ss_pred             eeccCCCCChhhcccCcccCCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCC
Confidence            5544432666665  3567789999999999999999999999999998      59999999999999999999986  


Q ss_pred             ---cEEECCCCcee-chhHHhhhcchhhHHHHHhhCCCCCCCc
Q 023654          235 ---SVWCFACHAYL-NAQAILQLQPVHETAYVLKFGRALPFLM  273 (279)
Q Consensus       235 ---~v~CY~Cd~~V-~~~~~~~l~~~~~~~h~~~fg~~~~~~~  273 (279)
                         +||||.||+.| ||++         ..||.+|||++....
T Consensus       237 dg~DvycY~cDd~v~dPnl---------~~hl~hfGId~~~m~  270 (763)
T KOG0944|consen  237 DGADVYCYDCDDEVRDPNL---------ESHLSHFGIDMAKMD  270 (763)
T ss_pred             CccceeeecccccccCccH---------HHHHHhcCccHHHhc
Confidence               99999999777 8888         899999999987543

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.3e-31  Score=255.49  Aligned_cols=208  Identities=20%  Similarity=0.355  Sum_probs=157.2

Q ss_pred             CCCcccccccccCcCCCCC--CCCCCCCC----CCCCCeeeecccCceeecccccchh-hhhhhccCCeEEEEcCCCcEE
Q 023654           32 ASCDHLVASLSSDLARIPT--PDTPCNMC----KHPRGNWLCLCCKEVLCSRYVNKHM-LRHYREKNHSVALDYSDLSVW  104 (279)
Q Consensus        32 ~~CpHl~~~l~~~~~~~~~--~~~~C~~C----~~~~~lwvCL~Cg~~~Cgr~~~~Ha-~~H~~~t~H~l~l~l~~~~vw  104 (279)
                      ++|||+..+ .......|.  ...+|.+|    ....++-+||+|++.+|++..--|. +.|+.+|-|++++.+.     
T Consensus         1 ~S~~H~e~a-e~vlpn~~av~~reeC~yCf~S~~~e~si~vClnCfqs~C~~h~~~H~~~~~~c~tvh~i~~tia-----   74 (749)
T COG5207           1 KSFSHSEMA-EMVLPNLPAVRFREECCYCFRSIGDEHSISVCLNCFQSFCEKHRGIHLGTKSGCRTVHDIKETIA-----   74 (749)
T ss_pred             CCCchhhhh-hhcCCCCchhhhhhhhheeeccCCCCcceehHHHHhHhhhhhccceeecchhhhhhhhhhhhhhh-----
Confidence            478999443 111111121  35789999    3455799999999999999877888 6888999999998886     


Q ss_pred             EcCCCcccchhhhhhccccchhhhhhhhccCCCCCCCCCccccccchhhh------------------------------
Q 023654          105 CFACHAYLNAQAILQLRPVHETSYVLKFGRALPFNTGQHPKVKEDDEMML------------------------------  154 (279)
Q Consensus       105 Cy~Cd~~V~~~~l~~l~~~~~~~~~~~fg~~~~~~~~kl~i~~~~~e~~~------------------------------  154 (279)
                                    ++.|..      +.-++++.|..||.+.+.+|||.|                              
T Consensus        75 --------------~~~PKQ------e~~eE~~nK~ikl~~~e~seed~~~~~~VPr~vl~k~t~s~~s~~~~~kiE~m~  134 (749)
T COG5207          75 --------------DLGPKQ------ENVEENNNKKIKLKNAELSEEDVEELRRVPRTVLSKSTDSDISSTALEKIERME  134 (749)
T ss_pred             --------------hcCchh------hccccCccceeeeeeeccchhhhHHhhccchhhcccccccccchhhHHHHHHHH
Confidence                          232432      223566668889999888888777                              


Q ss_pred             --------ccccccccccccchhhhhhhcccccCC-CCCCCCCCCCCCCCCeeeecccCceecccC-----CChHHHHHh
Q 023654          155 --------GAESGSVRHLTSCDHLVASLSTDLARI-PNPDTPCNRCQHPRGNWLCLCCKEVLCSRY-----VNKHMLQHY  220 (279)
Q Consensus       155 --------~~~~~~~~~~~~C~Hl~~~l~~~~~~~-~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~-----~~~Ha~~H~  220 (279)
                              .+..+|+.++..|+|. ..+....... .....+|+.|++..|+|+||+||++||||-     +||||+.||
T Consensus       135 ~a~k~~~ed~~~~w~~E~~tC~H~-~n~~~~s~~~~ni~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY  213 (749)
T COG5207         135 IAIKPGDEDERVLWRDEEVTCVHG-CNEGPSSIEMGNIGGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHY  213 (749)
T ss_pred             HhcCCCchhhhhhhhhhccccccc-CCCCCCcccccccCCceeccccchhceEEEEecCcccccceeecCCCCcchhhhh
Confidence                    1567799999999999 5443321111 125689999999999999999999999997     899999999


Q ss_pred             hhcCCeeEEeCCCc-----cEEECCCCcee--chhHHhhhcchhhHHHHHhhCCCCCCCc
Q 023654          221 QETNHSVALGYSDL-----SVWCFACHAYL--NAQAILQLQPVHETAYVLKFGRALPFLM  273 (279)
Q Consensus       221 ~~~~H~l~v~l~t~-----~v~CY~Cd~~V--~~~~~~~l~~~~~~~h~~~fg~~~~~~~  273 (279)
                      ++++||++|+|.++     +||||.||+.+  +++.-       ...|+..|||++..-.
T Consensus       214 ~~t~Hplavkl~Sls~~~~diyCY~CD~e~R~~~n~n-------~~s~~~~fGinIa~~~  266 (749)
T COG5207         214 EETQHPLAVKLPSLSKEDCDIYCYLCDSEIRSRYNSN-------ENSVTIDFGINIADGK  266 (749)
T ss_pred             hccCCceEEEccccccccccEEEEecCcccccCCccc-------ccceeeeeccchhhcc
Confidence            99999999999876     99999999875  34221       0577889999876543

>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.83  E-value=5.4e-21  Score=139.49  Aligned_cols=60  Identities=45%  Similarity=1.028  Sum_probs=53.8

Q ss_pred             CCCCCCC-CCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCCceech
Q 023654          188 CNRCQHP-RGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNA  247 (279)
Q Consensus       188 C~~C~~~-~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd~~V~~  247 (279)
                      |++|+.. .++|+||+||++||||+.++||++|+++++|+++|++.+..||||.||+||.+
T Consensus         1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~   61 (63)
T PF02148_consen    1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD   61 (63)
T ss_dssp             -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred             CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence            7889888 99999999999999999999999999999999999999999999999999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....

>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.79  E-value=7.3e-20  Score=133.52  Aligned_cols=61  Identities=43%  Similarity=1.030  Sum_probs=54.3

Q ss_pred             CCCCCCC-CCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccchh
Q 023654           55 CNMCKHP-RGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQ  115 (279)
Q Consensus        55 C~~C~~~-~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~  115 (279)
                      |..|... .++|+||+||++||+|+.++|++.|+++++|+|+|++.+..||||.|++||+++
T Consensus         1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~~   62 (63)
T PF02148_consen    1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYDP   62 (63)
T ss_dssp             -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEEST
T ss_pred             CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeCC
Confidence            7788766 899999999999999999999999999999999999999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.9e-18  Score=171.76  Aligned_cols=107  Identities=29%  Similarity=0.599  Sum_probs=90.1

Q ss_pred             ceeeecCCCCccccccccc--CcCCCCCCCCCCCCCCCCCCeeeecccCceeeccc------ccchhhhhhhccCCeEEE
Q 023654           25 LGWVRHLASCDHLVASLSS--DLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRY------VNKHMLRHYREKNHSVAL   96 (279)
Q Consensus        25 ~~~~~~~~~CpHl~~~l~~--~~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~------~~~Ha~~H~~~t~H~l~l   96 (279)
                      .+|+.++..+++-...|.+  +...+|+..++|+.|+...++|+||+||.++|||.      +|+||+.||++|+|||+|
T Consensus       150 ~aWd~Evr~v~k~~~nl~q~dng~~~~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaV  229 (763)
T KOG0944|consen  150 NAWDNEVRTVSKHANNLSQIDNGKRIPPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAV  229 (763)
T ss_pred             hhhhhheeeccCCCCChhhcccCcccCCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEE
Confidence            4799998555444255554  23567777899999999999999999999999993      599999999999999999


Q ss_pred             EcCC-----CcEEEcCCCcccchhhhhhccccchhhhhhhhccCCCCC
Q 023654           97 DYSD-----LSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFN  139 (279)
Q Consensus        97 ~l~~-----~~vwCy~Cd~~V~~~~l~~l~~~~~~~~~~~fg~~~~~~  139 (279)
                      ++++     .+||||.||+.|.||.|.        .|++.||+++...
T Consensus       230 KLgsIs~dg~DvycY~cDd~v~dPnl~--------~hl~hfGId~~~m  269 (763)
T KOG0944|consen  230 KLGSISPDGADVYCYDCDDEVRDPNLE--------SHLSHFGIDMAKM  269 (763)
T ss_pred             EecccCCCccceeeecccccccCccHH--------HHHHhcCccHHHh
Confidence            9986     689999999999999776        6889999987643

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=4.8e-17  Score=157.97  Aligned_cols=89  Identities=25%  Similarity=0.627  Sum_probs=74.8

Q ss_pred             ceeeecCCCCcccccccccCcCCC-CCCCCCCCCCCCCCCeeeecccCceeeccc-----ccchhhhhhhccCCeEEEEc
Q 023654           25 LGWVRHLASCDHLVASLSSDLARI-PTPDTPCNMCKHPRGNWLCLCCKEVLCSRY-----VNKHMLRHYREKNHSVALDY   98 (279)
Q Consensus        25 ~~~~~~~~~CpHl~~~l~~~~~~~-~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~-----~~~Ha~~H~~~t~H~l~l~l   98 (279)
                      +.|+.++.+|+|. ..+.++.... .....+|+.|+...++|+||+||.+||||.     +++||+.||++|+|||+|.+
T Consensus       146 ~~w~~E~~tC~H~-~n~~~~s~~~~ni~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl  224 (749)
T COG5207         146 VLWRDEEVTCVHG-CNEGPSSIEMGNIGGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKL  224 (749)
T ss_pred             hhhhhhccccccc-CCCCCCcccccccCCceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEc
Confidence            5899999999999 5554433211 113579999999999999999999999993     69999999999999999999


Q ss_pred             CC-----CcEEEcCCCcccch
Q 023654           99 SD-----LSVWCFACHAYLNA  114 (279)
Q Consensus        99 ~~-----~~vwCy~Cd~~V~~  114 (279)
                      .+     .++|||.||+.+..
T Consensus       225 ~Sls~~~~diyCY~CD~e~R~  245 (749)
T COG5207         225 PSLSKEDCDIYCYLCDSEIRS  245 (749)
T ss_pred             cccccccccEEEEecCccccc
Confidence            75     58999999998653

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=99.64  E-value=9.1e-17  Score=153.85  Aligned_cols=66  Identities=32%  Similarity=0.702  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCCCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCCceechhH
Q 023654          184 PDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQA  249 (279)
Q Consensus       184 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd~~V~~~~  249 (279)
                      ....|..|+...++|+||.||+||||||..+||++||++|+|+++++|+|.+||.|+-|+||++-.
T Consensus       227 e~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~  292 (493)
T KOG0804|consen  227 ESSLCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLP  292 (493)
T ss_pred             hhhhhhhhcccccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhcc
Confidence            467899999999999999999999999999999999999999999999999999999999999744

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.50  E-value=4.7e-14  Score=138.04  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             hhhhhhhcccccCCCCCCCCCCCCCCCCCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCCceech
Q 023654          168 DHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNA  247 (279)
Q Consensus       168 ~Hl~~~l~~~~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd~~V~~  247 (279)
                      |++ +++.+.. ..+..+..|+.|+...|+|+||+||++++||.+++||..|+.+++|+++|+++|.+||||.|+++|..
T Consensus         1 ~yl-~ti~r~~-ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d   78 (440)
T cd02669           1 PYL-DTINRSV-LDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIID   78 (440)
T ss_pred             Cch-hhhhhhh-ccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeC
Confidence            345 4554431 23467888999999999999999999999999999999999999999999999999999999999954


Q ss_pred             h----HHhhhcchhhHHHHHhhCCC
Q 023654          248 Q----AILQLQPVHETAYVLKFGRA  268 (279)
Q Consensus       248 ~----~~~~l~~~~~~~h~~~fg~~  268 (279)
                      .    ++..+.+.++..-+..+..+
T Consensus        79 ~~l~~i~~~~~~~~~~~~i~~~~~~  103 (440)
T cd02669          79 SSLDDIKYVLNPTYTKEQISDLDRD  103 (440)
T ss_pred             ccHHHHHHHhcCCCCHHHHHHhhhc
Confidence            3    33334444554444444443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.46  E-value=5.5e-14  Score=137.56  Aligned_cols=85  Identities=18%  Similarity=0.350  Sum_probs=75.2

Q ss_pred             cccccccccCcCCCCCCCCCCCCCCCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccch
Q 023654           35 DHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNA  114 (279)
Q Consensus        35 pHl~~~l~~~~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~  114 (279)
                      |.| +++++..+.++ ....|+.|.+..++|+||+||.+++|+..++||..|+.+++|+++|+++++.||||.|+++|.|
T Consensus         1 ~yl-~ti~r~~ldfd-~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d   78 (440)
T cd02669           1 PYL-DTINRSVLDFD-FEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIID   78 (440)
T ss_pred             Cch-hhhhhhhcccc-ccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeC
Confidence            456 66666555555 5678999999999999999999999998999999999999999999999999999999999999


Q ss_pred             hhhhhcc
Q 023654          115 QAILQLR  121 (279)
Q Consensus       115 ~~l~~l~  121 (279)
                      +.|..++
T Consensus        79 ~~l~~i~   85 (440)
T cd02669          79 SSLDDIK   85 (440)
T ss_pred             ccHHHHH
Confidence            9888665

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=99.41  E-value=8e-14  Score=133.80  Aligned_cols=64  Identities=33%  Similarity=0.739  Sum_probs=60.0

Q ss_pred             CCCCCCCCCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccchh
Q 023654           52 DTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQ  115 (279)
Q Consensus        52 ~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~  115 (279)
                      ...|..|....++|+||.||++|||||..+||++|+++|+|.+++.+++.+||.|+-|+||+.-
T Consensus       228 ~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl  291 (493)
T KOG0804|consen  228 SSLCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRL  291 (493)
T ss_pred             hhhhhhhcccccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhc
Confidence            3468888889999999999999999999999999999999999999999999999999999853

>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

Probab=99.41  E-value=2.4e-13  Score=94.18  Aligned_cols=49  Identities=35%  Similarity=0.788  Sum_probs=46.5

Q ss_pred             CCCCCCCCCCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCcc
Q 023654          187 PCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLS  235 (279)
Q Consensus       187 ~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~  235 (279)
                      +|.+|+...++|+||+|+++||+|+.++|++.||++++|++++++.++.
T Consensus         1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~   49 (50)
T smart00290        1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR   49 (50)
T ss_pred             CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence            5999999999999999999999999999999999999999999998864

>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.5e-13  Score=138.48  Aligned_cols=90  Identities=24%  Similarity=0.600  Sum_probs=70.9

Q ss_pred             cccccccccchhhhhhhccc-c-cCCC-CCCCCCCCCCCC---------------CCeeeecccCceeccc-CCChHHHH
Q 023654          158 SGSVRHLTSCDHLVASLSTD-L-ARIP-NPDTPCNRCQHP---------------RGNWLCLCCKEVLCSR-YVNKHMLQ  218 (279)
Q Consensus       158 ~~~~~~~~~C~Hl~~~l~~~-~-~~~~-~~~~~C~~C~~~---------------~~lW~CL~Cg~vgCgr-~~~~Ha~~  218 (279)
                      ++..++...|.|+.+.+.+. + +.|. .....|++|...               ..+|+||.||+.|||| ....||+.
T Consensus        36 ~t~t~~~~~C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halk  115 (877)
T KOG1873|consen   36 KTPTETPVECQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQGCGRNSESQHALK  115 (877)
T ss_pred             cCCCCCccccchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCeeeCCCcccchhhh
Confidence            44444445599998888865 2 2222 255689999864               4699999999999999 57899999


Q ss_pred             Hhhhc---CCeeEEeCCCccEEECCCCceech
Q 023654          219 HYQET---NHSVALGYSDLSVWCFACHAYLNA  247 (279)
Q Consensus       219 H~~~~---~H~l~v~l~t~~v~CY~Cd~~V~~  247 (279)
                      ||+..   .|+++|++.++.||||.||..+-+
T Consensus       116 H~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~~  147 (877)
T KOG1873|consen  116 HFLTPRSEPHCLVINLINWLIWCYSCDAKLVP  147 (877)
T ss_pred             hhcccCCCCeeEEEEeeeeeeEEEeccchhcc
Confidence            99864   699999999999999999985443

>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

Probab=99.27  E-value=4.1e-12  Score=87.95  Aligned_cols=48  Identities=33%  Similarity=0.807  Sum_probs=45.0

Q ss_pred             CCCCCCCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCC
Q 023654           54 PCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDL  101 (279)
Q Consensus        54 ~C~~C~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~  101 (279)
                      +|..|....++|+||+|++++|+++.++|++.|+++++|++++++++.
T Consensus         1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~   48 (50)
T smart00290        1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQ   48 (50)
T ss_pred             CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEcccc
Confidence            589998888999999999999999988999999999999999999865

>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.8e-11  Score=122.27  Aligned_cols=78  Identities=26%  Similarity=0.684  Sum_probs=63.4

Q ss_pred             CCcccccccccCcC--CCC-CCCCCCCCCC------C---------CCCeeeecccCceeecc-cccchhhhhhhc---c
Q 023654           33 SCDHLVASLSSDLA--RIP-TPDTPCNMCK------H---------PRGNWLCLCCKEVLCSR-YVNKHMLRHYRE---K   90 (279)
Q Consensus        33 ~CpHl~~~l~~~~~--~~~-~~~~~C~~C~------~---------~~~lwvCL~Cg~~~Cgr-~~~~Ha~~H~~~---t   90 (279)
                      .|.|+.++|++..+  .+. ..+..|..|.      .         ...+|+||.||+.|||| ....|++.||..   +
T Consensus        44 ~C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~  123 (877)
T KOG1873|consen   44 ECQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSE  123 (877)
T ss_pred             ccchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCeeeCCCcccchhhhhhcccCCC
Confidence            49999888876432  111 1356899992      1         45799999999999999 577899999986   5


Q ss_pred             CCeEEEEcCCCcEEEcCCCc
Q 023654           91 NHSVALDYSDLSVWCFACHA  110 (279)
Q Consensus        91 ~H~l~l~l~~~~vwCy~Cd~  110 (279)
                      .|+|+|++.++.+|||.||.
T Consensus       124 ~Hclvin~~n~~~WCy~Cd~  143 (877)
T KOG1873|consen  124 PHCLVINLINWLIWCYSCDA  143 (877)
T ss_pred             CeeEEEEeeeeeeEEEeccc
Confidence            89999999999999999998

>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]

Probab=96.98  E-value=0.00071  Score=65.12  Aligned_cols=92  Identities=16%  Similarity=0.322  Sum_probs=73.2

Q ss_pred             ecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCC-CcEEEcC
Q 023654           29 RHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSD-LSVWCFA  107 (279)
Q Consensus        29 ~~~~~CpHl~~~l~~~~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~-~~vwCy~  107 (279)
                      .....|+.+ +++......+. ....|+...+.-+.+.||.||..+=||..++||..|.-++||.+++++.+ ...++..
T Consensus         8 ~~~~~~~yl-dtv~r~vldfd-~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlp   85 (442)
T KOG2026|consen    8 KQEPNYAYL-ETVVRRVLDFD-FEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLP   85 (442)
T ss_pred             ccCcchHhh-hhhhhhhcccc-CCCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecc
Confidence            344567777 55443223322 45679999888999999999999999999999999999999999999999 7777777


Q ss_pred             CCcccchhhhhhccc
Q 023654          108 CHAYLNAQAILQLRP  122 (279)
Q Consensus       108 Cd~~V~~~~l~~l~~  122 (279)
                      -++.+.|+.+.+++-
T Consensus        86 e~~ei~d~s~~~ikh  100 (442)
T KOG2026|consen   86 ENYEIDDPSLGDIKH  100 (442)
T ss_pred             hhccccCchhhhhhc
Confidence            778899888776543

>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]

Probab=96.13  E-value=0.0055  Score=59.14  Aligned_cols=83  Identities=18%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             ccchhhhhhhcccccCCCCCCCCCCCCCCCCCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCC-ccEEECCCCc
Q 023654          165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSD-LSVWCFACHA  243 (279)
Q Consensus       165 ~~C~Hl~~~l~~~~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t-~~v~CY~Cd~  243 (279)
                      ..|+++ +++.... .-+..+..|+.....-+...||.||...-||..+.||+.|.-+.+|.+++++.| ...|+...++
T Consensus        11 ~~~~yl-dtv~r~v-ldfd~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~   88 (442)
T KOG2026|consen   11 PNYAYL-ETVVRRV-LDFDFEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENY   88 (442)
T ss_pred             cchHhh-hhhhhhh-ccccCCCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecchhc
Confidence            456777 5544321 123577889999999999999999999999999999999999999999999999 8888888777


Q ss_pred             eechhH
Q 023654          244 YLNAQA  249 (279)
Q Consensus       244 ~V~~~~  249 (279)
                      .|+.+.
T Consensus        89 ei~d~s   94 (442)
T KOG2026|consen   89 EIDDPS   94 (442)
T ss_pred             cccCch
Confidence            775543

>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation

Probab=86.27  E-value=1.1  Score=38.42  Aligned_cols=57  Identities=25%  Similarity=0.619  Sum_probs=34.6

Q ss_pred             CCCCCC--CCCCeeeecccCceeeccc---ccchhhhhhhccCCe-EEEEc----CCCcEEEcCCCc
Q 023654           54 PCNMCK--HPRGNWLCLCCKEVLCSRY---VNKHMLRHYREKNHS-VALDY----SDLSVWCFACHA  110 (279)
Q Consensus        54 ~C~~C~--~~~~lwvCL~Cg~~~Cgr~---~~~Ha~~H~~~t~H~-l~l~l----~~~~vwCy~Cd~  110 (279)
                      .|.+|+  ....+-.|++|+.-+|-..   ..+|...|...+.|- +.+.-    ++..+-||.|..
T Consensus         2 aC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~   68 (152)
T PF09416_consen    2 ACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGS   68 (152)
T ss_dssp             S-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT--
T ss_pred             CccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCC
Confidence            599996  6779999999999999643   468999999988876 55543    346799999984

This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.

>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=82.44  E-value=0.5  Score=47.55  Aligned_cols=69  Identities=28%  Similarity=0.607  Sum_probs=56.3

Q ss_pred             CCCCCCCCC-CCCCeee-ecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccchhhhhhcc
Q 023654           51 PDTPCNMCK-HPRGNWL-CLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLR  121 (279)
Q Consensus        51 ~~~~C~~C~-~~~~lwv-CL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~l~  121 (279)
                      ....|.+|. ......+ |+.|..++|.  .+.|...|....+|-+.+++.++..+|+.|++||++.++.++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~  112 (492)
T KOG1867|consen   42 KTINCGTCGVLQIRLAVPCLICDSLGCL--SNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLA  112 (492)
T ss_pred             ccceeEEechhhhhhcccceechhcccc--cccccccccccccccccceeehhhheeccCCcEeeccchhhHH
Confidence            456788883 3456666 8999999995  4678999999999999999999999999999999977655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
3c5k_A	109	Crystal Structure Of Human Hdac6 Zinc Finger Domain		5e-17
3gv4_A	107	Crystal Structure Of Human Hdac6 Zinc Finger Domain		5e-17

>pdb|3C5K|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain Length = 109

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 164 LTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQET 223
           L  C HLVA      A + +   PC  C   + NW+CL C +V C RY+N HMLQH+  +
Sbjct: 4   LPWCPHLVAVCPIPAAGL-DVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNS 62
Query: 224 NHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
            H + L Y DLS WC+ C AY++ QA+L ++     A+  KFG  +P
Sbjct: 63  GHPLVLSYIDLSAWCYYCQAYVHHQALLDVK---NIAHQNKFGEDMP 106

>pdb|3GV4|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain And Ubiquitin C-Terminal Peptide Rlrgg Length = 107

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 164 LTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQET 223
           L  C HLVA      A + +   PC  C   + NW+CL C +V C RY+N HMLQH+  +
Sbjct: 2   LPWCPHLVAVCPIPAAGL-DVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNS 60
Query: 224 NHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALP 270
            H + L Y DLS WC+ C AY++ QA+L ++     A+  KFG  +P
Sbjct: 61  GHPLVLSYIDLSAWCYYCQAYVHHQALLDVK---NIAHQNKFGEDMP 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	2e-20
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	3e-19
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	3e-15
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	4e-15
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	2e-13
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	2e-12
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	5e-13
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	7e-13
2ida_A	102	Hypothetical protein; zinc binding protein, struct	2e-12
2ida_A	102	Hypothetical protein; zinc binding protein, struct	3e-11
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	5e-09
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	2e-07
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-08
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	5e-08

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109

 Score = 83.2 bits (205), Expect = 2e-20
 Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 164 LTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQET 223
           L  C HLV ++    A   +   PC  C   + NW+CL C +V C RY+N HMLQH+  +
Sbjct: 4   LPWCPHLV-AVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNS 62

Query: 224 NHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHETAYVLKFGRALPF 271
            H + L Y DLS WC+ C AY++ QA   L  V   A+  KFG  +P 
Sbjct: 63  GHPLVLSYIDLSAWCYYCQAYVHHQA---LLDVKNIAHQNKFGEDMPH 107

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109

 Score = 80.1 bits (197), Expect = 3e-19
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 31  LASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREK 90
           L  C HLV ++    A       PC  C   + NW+CL C +V C RY+N HML+H+   
Sbjct: 4   LPWCPHLV-AVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNS 62

Query: 91  NHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPF 138
            H + L Y DLS WC+ C AY++ QA   L  V   ++  KFG  +P 
Sbjct: 63  GHPLVLSYIDLSAWCYYCQAYVHHQA---LLDVKNIAHQNKFGEDMPH 107

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 167 CDHLV-ASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQH 219
             H        + ARIP     C++C      WL L    +LC R        N H ++H
Sbjct: 15  SKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH 74

Query: 220 YQETNHSVALGYSDLS-----VWCFAC 241
           Y+ET + +A+    ++     V+ +  
Sbjct: 75  YRETGYPLAVKLGTITPDGADVYSYDE 101

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 34  CDHLV-ASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRH 86
             H        + ARIP     C+ C      WL L    +LC R        N H + H
Sbjct: 15  SKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH 74

Query: 87  YREKNHSVALDYSDLS-----VWCFAC 108
           YRE  + +A+    ++     V+ +  
Sbjct: 75  YRETGYPLAVKLGTITPDGADVYSYDE 101

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126

 Score = 63.6 bits (154), Expect = 5e-13
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 182 PNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV-NKHMLQHY---QETNHSVALGYSDLSVW 237
              D      +     WLCL C    C R    +H L+HY   +   H + L   + SVW
Sbjct: 39  KVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVW 98

Query: 238 CFACHAYLNAQAILQL 253
           C+ C   +   +  QL
Sbjct: 99  CYVCDNEVQYCSSNQL 114

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126

 Score = 63.2 bits (153), Expect = 7e-13
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 49  PTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV-NKHMLRHY---REKNHSVALDYSDLSVW 104
              D      +     WLCL C    C R    +H L+HY   R + H + L   + SVW
Sbjct: 39  KVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVW 98

Query: 105 CFACHAYLNAQAILQL 120
           C+ C   +   +  QL
Sbjct: 99  CYVCDNEVQYCSSNQL 114

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNW----LCLCCKEVLCSRY-VNKHMLQH 219
             C H+       +  +      C  C      W    +C  C  V C     +KH  +H
Sbjct: 3   MGCRHV-----AGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRH 57

Query: 220 YQETNHSVALGY--SDLSVWCFACHAYLN 246
           +  T H +  GY   +   WC+      +
Sbjct: 58  FHATGHPIIEGYDPPEGWGWCYVDEVMFD 86

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 33  SCDHLVASLSSDLARIPTPDTPCNMCKHPRGNW----LCLCCKEVLCSRY-VNKHMLRHY 87
            C H+     + +  +      C  C      W    +C  C  V C     +KH  RH+
Sbjct: 4   GCRHV-----AGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHF 58

Query: 88  REKNHSVA--LDYSDLSVWCFACHAYLN 113
               H +    D  +   WC+      +
Sbjct: 59  HATGHPIIEGYDPPEGWGWCYVDEVMFD 86

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 31  LASCDHLVASLSSDLARIPTPDTP-CNMCKHPRG--NWLCLCCKEVLCSRYVNKHMLRHY 87
           L +C+     L+  + +    +T  C  C        ++CL C    C  + + H L H 
Sbjct: 26  LKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGC--WNHSHFLSHS 83

Query: 88  REKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHE 125
           ++  H   ++ ++  ++CF C  Y+    ++    + +
Sbjct: 84  KQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAK 121

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 25/123 (20%)

Query: 159 GSVRHLTSCDHLVASLSTDLAR------------IPNPDTP---------CNRCQHPRG- 196
           G+   ++ C H+      + ++            I N   P         C  C      
Sbjct: 1   GAAAAMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSG 60

Query: 197 -NWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLNAQAILQLQP 255
             ++CL C    C  + + H L H ++  H   +  ++  ++CF C  Y+    ++    
Sbjct: 61  ATFMCLQCGFCGC--WNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAI 118

Query: 256 VHE 258
           + +
Sbjct: 119 LAK 121

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 62/265 (23%)

Query: 33  SCDHLVASLSSDLARIPTPDTP---------CNMCKHPRGNWLCLCCKEVLCSRYVNKHM 83
           S + L++ L +   R+P               +  +   G ++C+        +YV    
Sbjct: 24  SEEALLSVLPT--IRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVE--- 78

Query: 84  LRHYREKNHSVALDY---------SDLSVWCFACHAYLNAQAIL--------QLRPVHET 126
            RH+ +    V L              +             AI         + +   + 
Sbjct: 79  -RHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDE 137

Query: 127 SY---VLKFGRALPFNTGQHPKVKEDDEM------MLGAESGSVR--------HLTSCDH 169
                +L     +  +          D +      +L A+S S +         +     
Sbjct: 138 DVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSK 197

Query: 170 LVASL--STDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQ 221
              SL    + ARIP     C++C      WL L    +LC R        N H ++HY+
Sbjct: 198 HAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYR 257

Query: 222 ETNHSVALGYSDLS-----VWCFAC 241
           ET + +A+    ++     V+ +  
Sbjct: 258 ETGYPLAVKLGTITPDGADVYSYDE 282

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 52.6 bits (125), Expect = 5e-08
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 27  WVRHLASCDHLVASL--SSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV----- 79
           W   +        SL    + ARIP     C+ C      WL L    +LC R       
Sbjct: 188 WDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSG 247

Query: 80  -NKHMLRHYREKNHSVALDYSDLS-----VWCFAC 108
            N H + HYRE  + +A+    ++     V+ +  
Sbjct: 248 GNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDE 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	100.0
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	99.97
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	99.96
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	99.95
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	99.91
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	99.9
2ida_A	102	Hypothetical protein; zinc binding protein, struct	99.88
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	99.88
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	99.86
2ida_A	102	Hypothetical protein; zinc binding protein, struct	99.84
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	99.8
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.72
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.66
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.62

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=290.10  Aligned_cols=189  Identities=20%  Similarity=0.309  Sum_probs=126.8

Q ss_pred             CCCCCCCC----CCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCCCcccchhhhhhccccchh
Q 023654           51 PDTPCNMC----KHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQLRPVHET  126 (279)
Q Consensus        51 ~~~~C~~C----~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~l~~~~~~  126 (279)
                      ...+|.+|    ....|++|||.|+..+|.    .|+..|++.++|++||+++                  +..++..+ 
T Consensus        45 ~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~----~~~~~~~~~~~~~~~l~i~------------------~~~~~~~~-  101 (854)
T 3ihp_A           45 HKDECAFSFDTPESEGGLYICMNTFLGFGK----QYVERHFNKTGQRVYLHLR------------------RTRRPKEE-  101 (854)
T ss_dssp             CCSSCSSSSCCTTSTTCEEEETTTCCEECT----TTHHHHHHHHCCCEEEEEE------------------EC-------
T ss_pred             ecccCceecCCCCCCCCeEEcccccccccH----HHHHHHHhccCCceEEEEE------------------EEeccccc-
Confidence            46799999    577899999999999996    4999999999999999998                  22222211 


Q ss_pred             hhhhhhccCCCCCCCCCcccccc----chhhh------------------------------------------------
Q 023654          127 SYVLKFGRALPFNTGQHPKVKED----DEMML------------------------------------------------  154 (279)
Q Consensus       127 ~~~~~fg~~~~~~~~kl~i~~~~----~e~~~------------------------------------------------  154 (279)
                      .....-++.++.+++||+|++|.    ++++|                                                
T Consensus       102 ~~~~~~~~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (854)
T 3ihp_A          102 DPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSASR  181 (854)
T ss_dssp             ----------------------------------CEEEEEEETTTTEEECTTCCTTSCHHHHHHHHHHHHHHTC------
T ss_pred             ccccccccCCccCcceeEEeeccCCcccccceeeeeeEEEEEecCCccccCCCcccCChhhHHHHHHHHHHHHhcCCHHH
Confidence            00001123356778999999874    33333                                                


Q ss_pred             -cccccccccc-ccchhhhhhhccc--ccCCCCCCCCCCCCCCCCCeeeecccCceecccCC------ChHHHHHhhhcC
Q 023654          155 -GAESGSVRHL-TSCDHLVASLSTD--LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETN  224 (279)
Q Consensus       155 -~~~~~~~~~~-~~C~Hl~~~l~~~--~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~------~~Ha~~H~~~~~  224 (279)
                       +++++|+.++ ..|+|+ ..|.+.  ...+++..++|++|+...++|+||+||+|||||+.      ++||+.||++++
T Consensus       182 ~~~~~~w~~~~~~~c~h~-~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~  260 (854)
T 3ihp_A          182 KQEVQAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETG  260 (854)
T ss_dssp             ----------CCCBCTTT-TTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHC
T ss_pred             HHHHHhhcCccCCCCcCc-cccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcC
Confidence             2567899887 999999 666554  24566677999999999999999999999999874      899999999999


Q ss_pred             CeeEEeCCC-----ccEEECCCCcee-chhHHhhhcchhhHHHHHhhCCCCCCC
Q 023654          225 HSVALGYSD-----LSVWCFACHAYL-NAQAILQLQPVHETAYVLKFGRALPFL  272 (279)
Q Consensus       225 H~l~v~l~t-----~~v~CY~Cd~~V-~~~~~~~l~~~~~~~h~~~fg~~~~~~  272 (279)
                      ||++|+|+|     .+||||.||++| ++.+         +.|+++|||++...
T Consensus       261 H~~~~~l~t~~~~~~~~~cy~~~~~v~~~~l---------~~~l~~~gi~~~~~  305 (854)
T 3ihp_A          261 YPLAVKLGTITPDGADVYSYDEDDMVLDPSL---------AEHLSHFGIDMLKM  305 (854)
T ss_dssp             CCEEEETTCCBTTBCCEEETTTTEECBCTTH---------HHHHHHTTCCC---
T ss_pred             CcEEEEcCCcCCCCCeEEEccCCCeeeCccH---------HHHHHHhCcccccc
Confidence            999999999     899999999999 5565         78999999987654

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A

Probab=99.97  E-value=6.5e-32  Score=216.25  Aligned_cols=108  Identities=40%  Similarity=0.792  Sum_probs=96.0

Q ss_pred             cccccchhhhhhhcccccCCCCCCCCCCCCCCCCCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCC
Q 023654          162 RHLTSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFAC  241 (279)
Q Consensus       162 ~~~~~C~Hl~~~l~~~~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~C  241 (279)
                      .+...|||+ ..|++.....+...+.|++|+...++|+||+||+|||||+.++||++||++++||++|+++|++||||.|
T Consensus         2 ~~~~~C~Hl-~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~c   80 (109)
T 3c5k_A            2 SPLPWCPHL-VAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYC   80 (109)
T ss_dssp             CCBSCCTTG-GGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTT
T ss_pred             CCCCCCcCc-ccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCC
Confidence            467899999 6777653223346789999999999999999999999999999999999999999999999999999999


Q ss_pred             CceechhHHhhhcchhhHHHHHhhCCCCCCCc
Q 023654          242 HAYLNAQAILQLQPVHETAYVLKFGRALPFLM  273 (279)
Q Consensus       242 d~~V~~~~~~~l~~~~~~~h~~~fg~~~~~~~  273 (279)
                      |+||+++.   |.+.+.++||.||||++++.+
T Consensus        81 d~~V~~~~---L~d~~~~~hl~~fg~~~~~~~  109 (109)
T 3c5k_A           81 QAYVHHQA---LLDVKNIAHQNKFGEDMPHPH  109 (109)
T ss_dssp             TEEBCCGG---GHHHHHHHHHHHHCSCCSSCC
T ss_pred             CCEEeccc---ccChHHHHHHHHhCCCCCCCC
Confidence            99998765   667788999999999999874

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A

Probab=99.96  E-value=2.1e-30  Score=213.14  Aligned_cols=108  Identities=23%  Similarity=0.401  Sum_probs=88.8

Q ss_pred             ccccccccc-ccchhhhhhhccc--ccCCCCCCCCCCCCCCCCCeeeecccCceecccCC------ChHHHHHhhhcCCe
Q 023654          156 AESGSVRHL-TSCDHLVASLSTD--LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHS  226 (279)
Q Consensus       156 ~~~~~~~~~-~~C~Hl~~~l~~~--~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~------~~Ha~~H~~~~~H~  226 (279)
                      ++++|+.+. ..|||+ ..|.+.  ...+++..++|++|+...++|+||+||+|||||+.      ++||++||++++||
T Consensus         3 ~~~~W~~e~~~~C~h~-~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~   81 (129)
T 2g45_A            3 EVQAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP   81 (129)
T ss_dssp             --------CCEECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred             HHHhhcCCCCCCCCCc-CcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence            578998776 789999 677764  23455677899999999999999999999999985      99999999999999


Q ss_pred             eEEeCCCc-----cEEECCCCcee-chhHHhhhcchhhHHHHHhhCCCCCCCc
Q 023654          227 VALGYSDL-----SVWCFACHAYL-NAQAILQLQPVHETAYVLKFGRALPFLM  273 (279)
Q Consensus       227 l~v~l~t~-----~v~CY~Cd~~V-~~~~~~~l~~~~~~~h~~~fg~~~~~~~  273 (279)
                      ++|+|+|+     +||||.||+|| |+.+         +.||+||||+++...
T Consensus        82 l~v~l~t~~~~~~~vwcY~cd~~V~dp~L---------~~hl~~fgi~~~~~~  125 (129)
T 2g45_A           82 LAVKLGTITPDGADVYSYDEDDMVLDPSL---------AEHLSHFGIDMLKMQ  125 (129)
T ss_dssp             EEEETTCCBTTBCCEEETTTTEEEECTTH---------HHHHHTTTCCTTTCC
T ss_pred             EEEECCCCCCCCCeEEECCCCCEeECccH---------HHHHHHHCCChhhhh
Confidence            99999995     99999999999 5666         899999999998764

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A

Probab=99.95  E-value=6.4e-28  Score=193.06  Aligned_cols=107  Identities=38%  Similarity=0.796  Sum_probs=93.0

Q ss_pred             ecCCCCcccccccccCcCCCCCCCCCCCCCCCCCCeeeecccCceeecccccchhhhhhhccCCeEEEEcCCCcEEEcCC
Q 023654           29 RHLASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWCFAC  108 (279)
Q Consensus        29 ~~~~~CpHl~~~l~~~~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwCy~C  108 (279)
                      .|...|||+ .+|++.....+...+.|..|....++|+||+||++||||+.++||+.||++++|+|++++.+.+||||.|
T Consensus         2 ~~~~~C~Hl-~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~c   80 (109)
T 3c5k_A            2 SPLPWCPHL-VAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYC   80 (109)
T ss_dssp             CCBSCCTTG-GGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTT
T ss_pred             CCCCCCcCc-ccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCC
Confidence            578899999 6776532222224678999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhhccccchhhhhhhhccCCCCC
Q 023654          109 HAYLNAQAILQLRPVHETSYVLKFGRALPFN  139 (279)
Q Consensus       109 d~~V~~~~l~~l~~~~~~~~~~~fg~~~~~~  139 (279)
                      |+||++++|.   +.+..+|+.+||+++++.
T Consensus        81 d~~V~~~~L~---d~~~~~hl~~fg~~~~~~  108 (109)
T 3c5k_A           81 QAYVHHQALL---DVKNIAHQNKFGEDMPHP  108 (109)
T ss_dssp             TEEBCCGGGH---HHHHHHHHHHHCSCCSSC
T ss_pred             CCEEeccccc---ChHHHHHHHHhCCCCCCC
Confidence            9999999877   444569999999999885

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A

Probab=99.91  E-value=4.3e-25  Score=181.48  Aligned_cols=106  Identities=25%  Similarity=0.417  Sum_probs=86.9

Q ss_pred             ceeeecC-CCCcccccccccCc--CCCCCCCCCCCCCCCCCCeeeecccCceeecccc------cchhhhhhhccCCeEE
Q 023654           25 LGWVRHL-ASCDHLVASLSSDL--ARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVA   95 (279)
Q Consensus        25 ~~~~~~~-~~CpHl~~~l~~~~--~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~------~~Ha~~H~~~t~H~l~   95 (279)
                      ..|+.+. ..|||+ ..|.+..  ..+++..+.|..|....++|+||+||++||||+.      ++||+.||++++|||+
T Consensus         5 ~~W~~e~~~~C~h~-~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~   83 (129)
T 2g45_A            5 QAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLA   83 (129)
T ss_dssp             ------CCEECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEE
T ss_pred             HhhcCCCCCCCCCc-CcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEE
Confidence            4687554 689999 6666432  2345456789999999999999999999999986      9999999999999999


Q ss_pred             EEcCC-----CcEEEcCCCcccchhhhhhccccchhhhhhhhccCCCCC
Q 023654           96 LDYSD-----LSVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALPFN  139 (279)
Q Consensus        96 l~l~~-----~~vwCy~Cd~~V~~~~l~~l~~~~~~~~~~~fg~~~~~~  139 (279)
                      |++.+     .+||||.||+||.||.|.        .|+.+||+++...
T Consensus        84 v~l~t~~~~~~~vwcY~cd~~V~dp~L~--------~hl~~fgi~~~~~  124 (129)
T 2g45_A           84 VKLGTITPDGADVYSYDEDDMVLDPSLA--------EHLSHFGIDMLKM  124 (129)
T ss_dssp             EETTCCBTTBCCEEETTTTEEEECTTHH--------HHHHTTTCCTTTC
T ss_pred             EECCCCCCCCCeEEECCCCCEeECccHH--------HHHHHHCCChhhh
Confidence            99999     699999999999999876        7899999988754

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5

Probab=99.88  E-value=8.9e-24  Score=166.72  Aligned_cols=78  Identities=24%  Similarity=0.584  Sum_probs=67.5

Q ss_pred             ccchhhhhhhcccccCCCCCCCCCCCCCCCC----CeeeecccCceecccC-CChHHHHHhhhcCCeeEEeCC--CccEE
Q 023654          165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPR----GNWLCLCCKEVLCSRY-VNKHMLQHYQETNHSVALGYS--DLSVW  237 (279)
Q Consensus       165 ~~C~Hl~~~l~~~~~~~~~~~~~C~~C~~~~----~lW~CL~Cg~vgCgr~-~~~Ha~~H~~~~~H~l~v~l~--t~~v~  237 (279)
                      ..|||+ ..+..    +++..++|++|+..+    +||+||+||+|||||+ +++||++||++++|||+++++  +.+||
T Consensus         3 ~~C~Hl-~~~~~----~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vw   77 (102)
T 2ida_A            3 MGCRHV-AGIRT----VTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGW   77 (102)
T ss_dssp             CCCGGG-GGCCC----CCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEE
T ss_pred             CcCcCc-ccccc----CCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEE
Confidence            359999 54443    234579999999997    8999999999999999 999999999999999998887  57999


Q ss_pred             ECCCCceech
Q 023654          238 CFACHAYLNA  247 (279)
Q Consensus       238 CY~Cd~~V~~  247 (279)
                      ||.||+||+.
T Consensus        78 cY~cd~~V~~   87 (102)
T 2ida_A           78 CYVDEVMFDL   87 (102)
T ss_dssp             ETTTTEEEEC
T ss_pred             EcCCCcEEEC
Confidence            9999999954

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}

Probab=99.88  E-value=1.4e-23  Score=171.84  Aligned_cols=94  Identities=29%  Similarity=0.621  Sum_probs=76.4

Q ss_pred             ccchhhhhhhccc-c-cCC-CCCCCCCCCCCC--------------CCCeeeecccCceecccC-CChHHHHHhhh---c
Q 023654          165 TSCDHLVASLSTD-L-ARI-PNPDTPCNRCQH--------------PRGNWLCLCCKEVLCSRY-VNKHMLQHYQE---T  223 (279)
Q Consensus       165 ~~C~Hl~~~l~~~-~-~~~-~~~~~~C~~C~~--------------~~~lW~CL~Cg~vgCgr~-~~~Ha~~H~~~---~  223 (279)
                      ..|||+...+.+. . ..+ +...+.|.+|..              ..++|+||+||+|||||+ +++||++||++   +
T Consensus         5 ~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t   84 (126)
T 2i50_A            5 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSE   84 (126)
T ss_dssp             CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCSS
T ss_pred             CCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCCC
Confidence            6899995544332 1 112 234578999986              699999999999999998 78999999999   8


Q ss_pred             CCeeEEeCCCccEEECCCCceechhHHhhhcchhh
Q 023654          224 NHSVALGYSDLSVWCFACHAYLNAQAILQLQPVHE  258 (279)
Q Consensus       224 ~H~l~v~l~t~~v~CY~Cd~~V~~~~~~~l~~~~~  258 (279)
                      +||++|+++|+.||||.||+||.++..++|.++.+
T Consensus        85 ~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l~~~v~  119 (126)
T 2i50_A           85 PHCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVD  119 (126)
T ss_dssp             CCCEEEETTTCCEEETTTTEEECCCTTSHHHHHHH
T ss_pred             CCcEEEECCCCeEEeCCCCcEEEcCcchhHHHHHH
Confidence            99999999999999999999998766666766653

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5

Probab=99.84  E-value=1.3e-21  Score=154.24  Aligned_cols=79  Identities=22%  Similarity=0.540  Sum_probs=67.7

Q ss_pred             CCcccccccccCcCCCCCCCCCCCCCCCCC----CeeeecccCceeeccc-ccchhhhhhhccCCeEEEEcC--CCcEEE
Q 023654           33 SCDHLVASLSSDLARIPTPDTPCNMCKHPR----GNWLCLCCKEVLCSRY-VNKHMLRHYREKNHSVALDYS--DLSVWC  105 (279)
Q Consensus        33 ~CpHl~~~l~~~~~~~~~~~~~C~~C~~~~----~lwvCL~Cg~~~Cgr~-~~~Ha~~H~~~t~H~l~l~l~--~~~vwC  105 (279)
                      .|||+ ..++.    +++..+.|..|...+    +||+||+||++||+|+ .++||+.||++|+|||++++.  +.++||
T Consensus         4 ~C~Hl-~~~~~----~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwc   78 (102)
T 2ida_A            4 GCRHV-AGIRT----VTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWC   78 (102)
T ss_dssp             CCGGG-GGCCC----CCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEE
T ss_pred             cCcCc-ccccc----CCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEE
Confidence            59999 55442    233468999997665    8889999999999998 899999999999999999987  578999


Q ss_pred             cCCCcccchhh
Q 023654          106 FACHAYLNAQA  116 (279)
Q Consensus       106 y~Cd~~V~~~~  116 (279)
                      |.||+||.+|+
T Consensus        79 Y~cd~~V~~p~   89 (102)
T 2ida_A           79 YVDEVMFDLSD   89 (102)
T ss_dssp             TTTTEEEECTT
T ss_pred             cCCCcEEECcc
Confidence            99999999874

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}

Probab=99.80  E-value=6.3e-21  Score=156.13  Aligned_cols=90  Identities=29%  Similarity=0.637  Sum_probs=71.1

Q ss_pred             CCCCcccccccccCc--CC-CCCCCCCCCCCCC--------------CCCeeeecccCceeeccc-ccchhhhhhhc---
Q 023654           31 LASCDHLVASLSSDL--AR-IPTPDTPCNMCKH--------------PRGNWLCLCCKEVLCSRY-VNKHMLRHYRE---   89 (279)
Q Consensus        31 ~~~CpHl~~~l~~~~--~~-~~~~~~~C~~C~~--------------~~~lwvCL~Cg~~~Cgr~-~~~Ha~~H~~~---   89 (279)
                      ...|||+...+.++.  .. .+...+.|..|..              ..++|+||+||++||||+ .++||+.||++   
T Consensus         4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~   83 (126)
T 2i50_A            4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRS   83 (126)
T ss_dssp             -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCS
T ss_pred             CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCC
Confidence            357999954443211  11 2223467998854              689999999999999998 68999999999   


Q ss_pred             cCCeEEEEcCCCcEEEcCCCcccchhhhhhc
Q 023654           90 KNHSVALDYSDLSVWCFACHAYLNAQAILQL  120 (279)
Q Consensus        90 t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~l  120 (279)
                      ++|||++++.+..||||.||+||.++....+
T Consensus        84 t~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l  114 (126)
T 2i50_A           84 EPHCLVLSLDNWSVWCYVCDNEVQYCSSNQL  114 (126)
T ss_dssp             SCCCEEEETTTCCEEETTTTEEECCCTTSHH
T ss_pred             CCCcEEEECCCCeEEeCCCCcEEEcCcchhH
Confidence            8999999999999999999999998754443

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.72  E-value=5.6e-18  Score=176.01  Aligned_cols=94  Identities=27%  Similarity=0.498  Sum_probs=77.1

Q ss_pred             ceeeecC-CCCccccccccc-C-cCCCCCCCCCCCCCCCCCCeeeecccCceeecccc------cchhhhhhhccCCeEE
Q 023654           25 LGWVRHL-ASCDHLVASLSS-D-LARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVA   95 (279)
Q Consensus        25 ~~~~~~~-~~CpHl~~~l~~-~-~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~~------~~Ha~~H~~~t~H~l~   95 (279)
                      ..|+.++ ..|+|+ ..|.+ + ...+++..+.|..|....++|+||+||++||||+.      ++||+.||++++|+++
T Consensus       186 ~~w~~~~~~~c~h~-~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~  264 (854)
T 3ihp_A          186 QAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLA  264 (854)
T ss_dssp             ------CCCBCTTT-TTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEE
T ss_pred             HhhcCccCCCCcCc-cccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEE
Confidence            4798887 899999 65543 2 23455567899999999999999999999999864      8999999999999999


Q ss_pred             EEcCC-----CcEEEcCCCcccchhhhhh
Q 023654           96 LDYSD-----LSVWCFACHAYLNAQAILQ  119 (279)
Q Consensus        96 l~l~~-----~~vwCy~Cd~~V~~~~l~~  119 (279)
                      +++.+     .+||||.||++|.++.|..
T Consensus       265 ~~l~t~~~~~~~~~cy~~~~~v~~~~l~~  293 (854)
T 3ihp_A          265 VKLGTITPDGADVYSYDEDDMVLDPSLAE  293 (854)
T ss_dssp             EETTCCBTTBCCEEETTTTEECBCTTHHH
T ss_pred             EEcCCcCCCCCeEEEccCCCeeeCccHHH
Confidence            99999     9999999999999998874

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.66  E-value=3.4e-17  Score=158.42  Aligned_cols=63  Identities=22%  Similarity=0.630  Sum_probs=58.5

Q ss_pred             CCCCCCCCCC--CCeeeecccCceecccCCChHHHHHhhhcCCeeEEeCCCccEEECCCCceec-hhH
Q 023654          185 DTPCNRCQHP--RGNWLCLCCKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCFACHAYLN-AQA  249 (279)
Q Consensus       185 ~~~C~~C~~~--~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY~Cd~~V~-~~~  249 (279)
                      .++|++|...  .++|+||+||++|||+  ++||+.|+.+++|+++|++.+.+||||.||++|. +.+
T Consensus        48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l  113 (476)
T 3mhs_A           48 TMKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDL  113 (476)
T ss_dssp             HSBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHH
T ss_pred             CCCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHH
Confidence            4679999988  7999999999999998  8999999999999999999999999999999994 554

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.62  E-value=6.6e-17  Score=156.44  Aligned_cols=92  Identities=18%  Similarity=0.525  Sum_probs=71.1

Q ss_pred             eeeecCCCCcccccccccCc----C------------CCCC-----CCCCCCCCCCC--CCeeeecccCceeecccccch
Q 023654           26 GWVRHLASCDHLVASLSSDL----A------------RIPT-----PDTPCNMCKHP--RGNWLCLCCKEVLCSRYVNKH   82 (279)
Q Consensus        26 ~~~~~~~~CpHl~~~l~~~~----~------------~~~~-----~~~~C~~C~~~--~~lwvCL~Cg~~~Cgr~~~~H   82 (279)
                      +|+.|+..|||+...++...    .            ..+.     ....|..|...  .++|+||+||++|||+  ++|
T Consensus         1 ~~~~~~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h   78 (476)
T 3mhs_A            1 GAAAAMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWN--HSH   78 (476)
T ss_dssp             ----CCCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSBCTTTCCBCSSSEEEESSSSCEEETT--TTH
T ss_pred             CCcccccCCcCHHHHhcchhhHHHHHHHhHHHHHhhccCchhhcccCCCCcccccCCCCCCceEeCCCCCCccCC--chH
Confidence            46789999999944321000    0            0110     12469999776  7999999999999997  789


Q ss_pred             hhhhhhccCCeEEEEcCCCcEEEcCCCcccchhhhhh
Q 023654           83 MLRHYREKNHSVALDYSDLSVWCFACHAYLNAQAILQ  119 (279)
Q Consensus        83 a~~H~~~t~H~l~l~l~~~~vwCy~Cd~~V~~~~l~~  119 (279)
                      |..|+.+++|++++++.+.++|||.|+++|.|++|.+
T Consensus        79 ~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~  115 (476)
T 3mhs_A           79 FLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLIN  115 (476)
T ss_dssp             HHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHHHH
T ss_pred             HHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHHHH
Confidence            9999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d2uzga1	95	g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy	1e-13
d2uzga1	95	g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy	3e-13
d2g45a1	113	g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h	1e-12
d2g45a1	113	g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h	6e-12
d2idaa1	102	g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R	2e-11
d2idaa1	102	g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R	3e-11

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 165 TSCDHLVASLSTDLARIPNPDT-PCNRCQHPRGN-WLCLC--CKEVLCSRYVNKHMLQHY 220
             C HL +        +       C  C+    N W CL   C  V C      H   H 
Sbjct: 2   NHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHS 61

Query: 221 QETNHSVALGYSDLSVWCFACHAY 244
           QET H + +  + L VWC+AC   
Sbjct: 62  QETKHYLTVNLTTLRVWCYACSKE 85

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 33  SCDHLV-ASLSSDLARIPTPDTPCNMCKHPRGN-WLCLC--CKEVLCSRYVNKHMLRHYR 88
            C HL      +    I      C  CK    N W CL   C  V C      H   H +
Sbjct: 3   HCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQ 62

Query: 89  EKNHSVALDYSDLSVWCFACHAY 111
           E  H + ++ + L VWC+AC   
Sbjct: 63  ETKHYLTVNLTTLRVWCYACSKE 85

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 180 RIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRYV------NKHMLQHYQETNHSVAL---- 229
           RIP     C++C      WL L    +LC R        N H ++HY+ET + +A+    
Sbjct: 19  RIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGT 78

Query: 230 -GYSDLSVWCFACHAYL 245
                  V+ +     +
Sbjct: 79  ITPDGADVYSYDEDDMV 95

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 47  RIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRYV------NKHMLRHYREKNHSVALDYSD 100
           RIP     C+ C      WL L    +LC R        N H + HYRE  + +A+    
Sbjct: 19  RIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGT 78

Query: 101 LS-----VWCFACHAYL 112
           ++     V+ +     +
Sbjct: 79  ITPDGADVYSYDEDDMV 95

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 14/100 (14%)

Query: 166 SCDHLVASLSTDLARIPNPDTPCNRCQ----HPRGNWLCLCCKEVLCS-RYVNKHMLQHY 220
            C H+       +  +      C  C           +C  C  V C     +KH  +H+
Sbjct: 4   GCRHV-----AGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHF 58

Query: 221 QETNHSVALGY--SDLSVWCFACHAYLN--AQAILQLQPV 256
             T H +  GY   +   WC+      +   +      P+
Sbjct: 59  HATGHPIIEGYDPPEGWGWCYVDEVMFDLSDRMTPHNGPI 98

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 14/101 (13%)

Query: 32  ASCDHLVASLSSDLARIPTPDTPCNMC----KHPRGNWLCLCCKEVLCS-RYVNKHMLRH 86
             C H+     + +  +      C  C           +C  C  V C     +KH  RH
Sbjct: 3   MGCRHV-----AGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRH 57

Query: 87  YREKNH--SVALDYSDLSVWCFACHAYLN--AQAILQLRPV 123
           +    H      D  +   WC+      +   +      P+
Sbjct: 58  FHATGHPIIEGYDPPEGWGWCYVDEVMFDLSDRMTPHNGPI 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d2g45a1	113	Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum	99.95
d2g45a1	113	Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum	99.91
d2uzga1	95	Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H	99.88
d2idaa1	102	Hypothetical protein RPA1320 {Rhodopseudomonas pal	99.83
d2uzga1	95	Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H	99.83
d2idaa1	102	Hypothetical protein RPA1320 {Rhodopseudomonas pal	99.8

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-29  Score=199.41  Aligned_cols=96  Identities=26%  Similarity=0.470  Sum_probs=86.0

Q ss_pred             ccchhhhhhhccc--ccCCCCCCCCCCCCCCCCCeeeecccCceecccC------CChHHHHHhhhcCCeeEEeCCCc--
Q 023654          165 TSCDHLVASLSTD--LARIPNPDTPCNRCQHPRGNWLCLCCKEVLCSRY------VNKHMLQHYQETNHSVALGYSDL--  234 (279)
Q Consensus       165 ~~C~Hl~~~l~~~--~~~~~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~------~~~Ha~~H~~~~~H~l~v~l~t~--  234 (279)
                      ..|+|+ ..|.+.  ..++++..++|.+|+...++|+||+||+|||||+      +++||++||++++||++|+|+|+  
T Consensus         3 ~~~~h~-~~l~q~~~~~~~~p~~~~C~~C~~~~~lWlCL~CG~vgCgR~~~~~~~~~~HA~~H~~~t~H~l~v~l~t~~~   81 (113)
T d2g45a1           3 QVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP   81 (113)
T ss_dssp             EECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred             ccChhh-cchhhccCCccCCCCCCcccCCCCcCCEEEEecCCCCccCcccccCCCCChHHHHHHHhcCCCEEEEecCCCC
Confidence            468999 677764  4567788999999999999999999999999997      48999999999999999999886  


Q ss_pred             ---cEEECCCCcee-chhHHhhhcchhhHHHHHhhCCCCC
Q 023654          235 ---SVWCFACHAYL-NAQAILQLQPVHETAYVLKFGRALP  270 (279)
Q Consensus       235 ---~v~CY~Cd~~V-~~~~~~~l~~~~~~~h~~~fg~~~~  270 (279)
                         +||||.||+|| |+.+         ++||+||||+++
T Consensus        82 ~~~~vwCY~cd~~V~dp~l---------~~hl~~fgi~~~  112 (113)
T d2g45a1          82 DGADVYSYDEDDMVLDPSL---------AEHLSHFGIDML  112 (113)
T ss_dssp             TBCCEEETTTTEEEECTTH---------HHHHHTTTCCTT
T ss_pred             CCceEEEecCCCEEEChhH---------HHHHHHhCcccc
Confidence               69999999999 6666         899999999986

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.6e-25  Score=173.77  Aligned_cols=97  Identities=26%  Similarity=0.469  Sum_probs=83.8

Q ss_pred             CCCccccccccc--CcCCCCCCCCCCCCCCCCCCeeeecccCceeeccc------ccchhhhhhhccCCeEEEEcCCC--
Q 023654           32 ASCDHLVASLSS--DLARIPTPDTPCNMCKHPRGNWLCLCCKEVLCSRY------VNKHMLRHYREKNHSVALDYSDL--  101 (279)
Q Consensus        32 ~~CpHl~~~l~~--~~~~~~~~~~~C~~C~~~~~lwvCL~Cg~~~Cgr~------~~~Ha~~H~~~t~H~l~l~l~~~--  101 (279)
                      ..|+|+ ..|.+  +...+++..++|..|....++|+||+||++||||+      .++||+.||++++|||+|++.+.  
T Consensus         3 ~~~~h~-~~l~q~~~~~~~~p~~~~C~~C~~~~~lWlCL~CG~vgCgR~~~~~~~~~~HA~~H~~~t~H~l~v~l~t~~~   81 (113)
T d2g45a1           3 QVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP   81 (113)
T ss_dssp             EECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred             ccChhh-cchhhccCCccCCCCCCcccCCCCcCCEEEEecCCCCccCcccccCCCCChHHHHHHHhcCCCEEEEecCCCC
Confidence            468899 55554  23456667889999999999999999999999997      38999999999999999999874  


Q ss_pred             ---cEEEcCCCcccchhhhhhccccchhhhhhhhccCCC
Q 023654          102 ---SVWCFACHAYLNAQAILQLRPVHETSYVLKFGRALP  137 (279)
Q Consensus       102 ---~vwCy~Cd~~V~~~~l~~l~~~~~~~~~~~fg~~~~  137 (279)
                         +||||.||+||.||.|.        .|+++||+++.
T Consensus        82 ~~~~vwCY~cd~~V~dp~l~--------~hl~~fgi~~~  112 (113)
T d2g45a1          82 DGADVYSYDEDDMVLDPSLA--------EHLSHFGIDML  112 (113)
T ss_dssp             TBCCEEETTTTEEEECTTHH--------HHHHTTTCCTT
T ss_pred             CCceEEEecCCCEEEChhHH--------HHHHHhCcccc
Confidence               59999999999999876        68999998764

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.5e-24  Score=164.45  Aligned_cols=82  Identities=30%  Similarity=0.605  Sum_probs=69.2

Q ss_pred             ccchhhhhhhcccc--cCCCCCCCCCCCCCCC-CCeeeecc--cCceecccCCChHHHHHhhhcCCeeEEeCCCccEEEC
Q 023654          165 TSCDHLVASLSTDL--ARIPNPDTPCNRCQHP-RGNWLCLC--CKEVLCSRYVNKHMLQHYQETNHSVALGYSDLSVWCF  239 (279)
Q Consensus       165 ~~C~Hl~~~l~~~~--~~~~~~~~~C~~C~~~-~~lW~CL~--Cg~vgCgr~~~~Ha~~H~~~~~H~l~v~l~t~~v~CY  239 (279)
                      ..|||+ ..+.+..  ..+....++|.+|+.. .++|+||+  ||++||||+.++||+.||++++|+++|+|+|+.||||
T Consensus         2 ~~CpHl-~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~~~H~~~~~l~t~~vwCy   80 (95)
T d2uzga1           2 NHCPHL-DSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCY   80 (95)
T ss_dssp             CSCHHH-HHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEET
T ss_pred             CCCCCc-ChhhhcchhhhcCcCCCeeecCCCCCCCEEEeccccCCcEEccCCcCcHHHHHHhhhCCCEEEECCCCeEEEC
Confidence            579999 4444321  1223467899999987 58999995  9999999999999999999999999999999999999


Q ss_pred             CCCceech
Q 023654          240 ACHAYLNA  247 (279)
Q Consensus       240 ~Cd~~V~~  247 (279)
                      .||+||..
T Consensus        81 ~Cd~~v~~   88 (95)
T d2uzga1          81 ACSKEVFL   88 (95)
T ss_dssp             TTTEEECC
T ss_pred             CCCCEEEc
Confidence            99998853

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.83  E-value=8.6e-22  Score=153.66  Aligned_cols=80  Identities=24%  Similarity=0.645  Sum_probs=68.3

Q ss_pred             ccchhhhhhhcccccCCCCCCCCCCCCCCCCCee----eecccCceec-ccCCChHHHHHhhhcCCeeEEeCC--CccEE
Q 023654          165 TSCDHLVASLSTDLARIPNPDTPCNRCQHPRGNW----LCLCCKEVLC-SRYVNKHMLQHYQETNHSVALGYS--DLSVW  237 (279)
Q Consensus       165 ~~C~Hl~~~l~~~~~~~~~~~~~C~~C~~~~~lW----~CL~Cg~vgC-gr~~~~Ha~~H~~~~~H~l~v~l~--t~~v~  237 (279)
                      ..|||+ ..++    .+++..+.|.+|+...++|    +||+||++|| ||++++||++||++++||++++++  +.+||
T Consensus         3 ~~C~Hl-~~~~----~~~p~~~~C~~C~~~~~~W~~L~lCL~CG~vgC~~~~~~~Ha~~H~~~t~Hpl~~sl~~~~~~vw   77 (102)
T d2idaa1           3 MGCRHV-AGIR----TVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGW   77 (102)
T ss_dssp             CCCGGG-GGCC----CCCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEE
T ss_pred             CCCcCc-cccc----cCCCCCCCcccccCCCCcccccccccccCCEecCCCCcccHHHHHHHhcCCCeEEEecCCCceEE
Confidence            579999 5443    2345678999999998887    6999999999 577999999999999999999995  67899


Q ss_pred             ECCCCceechhH
Q 023654          238 CFACHAYLNAQA  249 (279)
Q Consensus       238 CY~Cd~~V~~~~  249 (279)
                      ||.||.||+.+.
T Consensus        78 CY~~d~~v~~p~   89 (102)
T d2idaa1          78 CYVDEVMFDLSD   89 (102)
T ss_dssp             ETTTTEEEECTT
T ss_pred             eecCcceeeCCC
Confidence            999999998654

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.6e-22  Score=151.74  Aligned_cols=84  Identities=29%  Similarity=0.580  Sum_probs=69.0

Q ss_pred             CCCCccccccccc-Cc-CCCCCCCCCCCCCCCC-CCeeeecc--cCceeecccccchhhhhhhccCCeEEEEcCCCcEEE
Q 023654           31 LASCDHLVASLSS-DL-ARIPTPDTPCNMCKHP-RGNWLCLC--CKEVLCSRYVNKHMLRHYREKNHSVALDYSDLSVWC  105 (279)
Q Consensus        31 ~~~CpHl~~~l~~-~~-~~~~~~~~~C~~C~~~-~~lwvCL~--Cg~~~Cgr~~~~Ha~~H~~~t~H~l~l~l~~~~vwC  105 (279)
                      +..|||+ ..+.. .. ...+...+.|..|... .++|+||+  ||++||||+.++||+.||++++|+|+|++.+..|||
T Consensus         1 r~~CpHl-~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~~~H~~~~~l~t~~vwC   79 (95)
T d2uzga1           1 RNHCPHL-DSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC   79 (95)
T ss_dssp             CCSCHHH-HHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEE
T ss_pred             CCCCCCc-ChhhhcchhhhcCcCCCeeecCCCCCCCEEEeccccCCcEEccCCcCcHHHHHHhhhCCCEEEECCCCeEEE
Confidence            3589999 54432 11 1122246789999765 58999995  999999999999999999999999999999999999


Q ss_pred             cCCCcccchh
Q 023654          106 FACHAYLNAQ  115 (279)
Q Consensus       106 y~Cd~~V~~~  115 (279)
                      |.||+||..+
T Consensus        80 y~Cd~~v~~d   89 (95)
T d2uzga1          80 YACSKEVFLD   89 (95)
T ss_dssp             TTTTEEECCC
T ss_pred             CCCCCEEEcC
Confidence            9999999843

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.80  E-value=6.3e-21  Score=148.70  Aligned_cols=82  Identities=22%  Similarity=0.598  Sum_probs=69.0

Q ss_pred             CCCcccccccccCcCCCCCCCCCCCCCCCCCCee----eecccCceee-cccccchhhhhhhccCCeEEEEcC--CCcEE
Q 023654           32 ASCDHLVASLSSDLARIPTPDTPCNMCKHPRGNW----LCLCCKEVLC-SRYVNKHMLRHYREKNHSVALDYS--DLSVW  104 (279)
Q Consensus        32 ~~CpHl~~~l~~~~~~~~~~~~~C~~C~~~~~lw----vCL~Cg~~~C-gr~~~~Ha~~H~~~t~H~l~l~l~--~~~vw  104 (279)
                      +.|||+ .+++    .+++..+.|..|...+++|    +||+||++|| +++.++||+.||++|+|||+++++  +.+||
T Consensus         3 ~~C~Hl-~~~~----~~~p~~~~C~~C~~~~~~W~~L~lCL~CG~vgC~~~~~~~Ha~~H~~~t~Hpl~~sl~~~~~~vw   77 (102)
T d2idaa1           3 MGCRHV-AGIR----TVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGW   77 (102)
T ss_dssp             CCCGGG-GGCC----CCCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEE
T ss_pred             CCCcCc-cccc----cCCCCCCCcccccCCCCcccccccccccCCEecCCCCcccHHHHHHHhcCCCeEEEecCCCceEE
Confidence            589999 5433    3334567899997777766    6999999999 478999999999999999999996  57899


Q ss_pred             EcCCCcccchhhhh
Q 023654          105 CFACHAYLNAQAIL  118 (279)
Q Consensus       105 Cy~Cd~~V~~~~l~  118 (279)
                      ||.||+||..+.+.
T Consensus        78 CY~~d~~v~~p~~~   91 (102)
T d2idaa1          78 CYVDEVMFDLSDRM   91 (102)
T ss_dssp             ETTTTEEEECTTTC
T ss_pred             eecCcceeeCCCCC
Confidence            99999999998765