Citrus Sinensis ID: 023657

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFSASFWA
cHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccccEEEEEccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEcHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHcccEEEEEEEcccccccccccccEEccEEcc
ccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHHccccccccccccccEEcccccccccccEEHHHHcccccccccccEccccccHHHHHHHHHHHHHHHHcccccccccEcHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccEEHHHcEEcEcccEEEcccHHHHHHHHHHHccEEEEEEEEccccccEEEEccEEcccccc
MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVnenpkagwkaarnpqfsnytvgqfkhllgvkptpkglllgvpvkthdkslklpksfdarsawpqcstisrildqghcgscwafgaVEALSDRFCIHFGMNLSLSVNDLLACCGflcgdgcdggypisaWRYFVHhgvvteecdpyfdstgcshpgcepayptpkcvrkcvkknqlwrnskhysisayrinsdpeDIMAEiykngpvevSFTVYEVKQTLTlysstdfsasfwa
MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKlpksfdarsawPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKknqlwrnskhysisayrinSDPEDIMAEIYKNGPVEVSFTVYEVKQTLtlysstdfsasfwa
MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNdllaccgflcgdgcdggYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFSASFWA
****HLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFS*****
**SSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHL**********************LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCE*AYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFSAS***
MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFSASFWA
*ASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPK****GVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFSA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVKQTLTLYSSTDFSASFWA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query279 2.2.26 [Sep-21-2011]
Q4R5M2339 Cathepsin B OS=Macaca fas N/A no 0.820 0.675 0.415 6e-46
Q5R6D1339 Cathepsin B OS=Pongo abel yes no 0.770 0.634 0.433 2e-45
P07858339 Cathepsin B OS=Homo sapie yes no 0.770 0.634 0.429 5e-45
P00787339 Cathepsin B OS=Rattus nor yes no 0.781 0.643 0.417 7e-44
P10605339 Cathepsin B OS=Mus muscul yes no 0.759 0.625 0.4 1e-41
P43510379 Cathepsin B-like cysteine yes no 0.870 0.641 0.368 3e-41
P25792340 Cathepsin B-like cysteine N/A no 0.892 0.732 0.387 4e-41
P43157342 Cathepsin B-like cysteine N/A no 0.863 0.704 0.376 1e-40
P43233340 Cathepsin B OS=Gallus gal yes no 0.756 0.620 0.408 2e-40
A1E295335 Cathepsin B OS=Sus scrofa yes no 0.792 0.659 0.4 3e-40
>sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1 Back     alignment and function desciption
 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/267 (41%), Positives = 143/267 (53%), Gaps = 38/267 (14%)

Query: 11  CLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQF 70
           CLL LG   S+              H L D ++  VN+     W+A  N  F N  V   
Sbjct: 10  CLLALGDARSRP-----------SFHPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYL 55

Query: 71  KHLLGV---KPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCW 127
           K L G     P P   ++        + LKLP+SFDAR  WPQC TI  I DQG CGSCW
Sbjct: 56  KRLCGTFLGGPKPPQRVM------FTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCW 109

Query: 128 AFGAVEALSDRFCIHFGMNLSLSVN--DLLACCGFLCGDGCDGGYPISAWRYFVHHGVVT 185
           AFGAVEA+SDR CIH   ++S+ V+  DLL CCG +CGDGC+GGYP  AW ++   G+V+
Sbjct: 110 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVS 169

Query: 186 E-------ECDPYF-----DSTGCSHPGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISA 232
                    C PY           S P C     TPKC + C    +  ++  KHY  ++
Sbjct: 170 GGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNS 229

Query: 233 YRINSDPEDIMAEIYKNGPVEVSFTVY 259
           Y +++  +DIMAEIYKNGPVE +F+VY
Sbjct: 230 YSVSNSEKDIMAEIYKNGPVEGAFSVY 256
Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.
Macaca fascicularis (taxid: 9541)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1
>sp|Q5R6D1|CATB_PONAB Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1 Back     alignment and function description
>sp|P07858|CATB_HUMAN Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3 Back     alignment and function description
>sp|P00787|CATB_RAT Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2 Back     alignment and function description
>sp|P10605|CATB_MOUSE Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2 Back     alignment and function description
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1 Back     alignment and function description
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1 Back     alignment and function description
>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1 Back     alignment and function description
>sp|P43233|CATB_CHICK Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1 Back     alignment and function description
>sp|A1E295|CATB_PIG Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
224064400357 predicted protein [Populus trichocarpa] 0.931 0.728 0.760 1e-115
255548165376 cathepsin B, putative [Ricinus communis] 0.863 0.640 0.740 1e-113
312283137362 unnamed protein product [Thellungiella h 0.924 0.712 0.721 1e-112
449446774348 PREDICTED: cathepsin B-like [Cucumis sat 0.931 0.747 0.733 1e-112
449489527349 PREDICTED: cathepsin B-like [Cucumis sat 0.931 0.744 0.731 1e-112
356505709357 PREDICTED: cathepsin B-like [Glycine max 0.931 0.728 0.726 1e-111
94958151356 cathepsin B [Nicotiana benthamiana] 0.931 0.730 0.721 1e-111
225437812358 PREDICTED: cathepsin B-like isoform 1 [V 0.931 0.726 0.745 1e-111
255647484327 unknown [Glycine max] 0.931 0.795 0.726 1e-111
217072748359 unknown [Medicago truncatula] gi|3885054 0.906 0.704 0.733 1e-111
>gi|224064400|ref|XP_002301457.1| predicted protein [Populus trichocarpa] gi|222843183|gb|EEE80730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/263 (76%), Positives = 221/263 (84%), Gaps = 3/263 (1%)

Query: 1   MASSHLFLTTCLLILGVI---SSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAA 57
           M +S  F T  LL++G I    SQ  A   VS LKL+S ILQDSI+K+VN NPKAGWKA 
Sbjct: 1   METSLCFSTLLLLLIGAIFTFQSQVIAVEPVSDLKLNSRILQDSILKKVNGNPKAGWKAT 60

Query: 58  RNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRI 117
            N  FSNYTV QFK+LLGVKPTPK  L G+PV +H KSL+LP+ FDAR+AWPQCSTI +I
Sbjct: 61  MNHHFSNYTVAQFKYLLGVKPTPKEELRGIPVISHPKSLRLPEEFDARTAWPQCSTIGKI 120

Query: 118 LDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 177
           LDQGHCGSCWAFGAVE+LSDRFCIH+GMN+SLSVNDLLACCGFLCG GC+GGYPISAWRY
Sbjct: 121 LDQGHCGSCWAFGAVESLSDRFCIHYGMNISLSVNDLLACCGFLCGSGCNGGYPISAWRY 180

Query: 178 FVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINS 237
           FVHHGVVTEECDPYFD  GCSHPGCEP YPTPKC RKCV KNQLW+ SKHY +  YRI+S
Sbjct: 181 FVHHGVVTEECDPYFDDIGCSHPGCEPGYPTPKCARKCVNKNQLWKKSKHYGVKPYRIDS 240

Query: 238 DPEDIMAEIYKNGPVEVSFTVYE 260
           DPE IMAEIYKNGPVEV+FTVYE
Sbjct: 241 DPESIMAEIYKNGPVEVAFTVYE 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548165|ref|XP_002515139.1| cathepsin B, putative [Ricinus communis] gi|223545619|gb|EEF47123.1| cathepsin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|312283137|dbj|BAJ34434.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|449446774|ref|XP_004141146.1| PREDICTED: cathepsin B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489527|ref|XP_004158338.1| PREDICTED: cathepsin B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356505709|ref|XP_003521632.1| PREDICTED: cathepsin B-like [Glycine max] Back     alignment and taxonomy information
>gi|94958151|gb|ABF47216.1| cathepsin B [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|225437812|ref|XP_002281936.1| PREDICTED: cathepsin B-like isoform 1 [Vitis vinifera] gi|359480250|ref|XP_003632421.1| PREDICTED: cathepsin B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255647484|gb|ACU24206.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|217072748|gb|ACJ84734.1| unknown [Medicago truncatula] gi|388505480|gb|AFK40806.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
TAIR|locus:505006093362 AT1G02305 [Arabidopsis thalian 0.924 0.712 0.666 1.3e-93
TAIR|locus:2133402359 AT4G01610 [Arabidopsis thalian 0.921 0.715 0.652 1.6e-93
TAIR|locus:2204873379 AT1G02300 [Arabidopsis thalian 0.501 0.369 0.678 7.2e-86
UNIPROTKB|P07858339 CTSB "Cathepsin B" [Homo sapie 0.767 0.631 0.390 3.5e-36
RGD|621509339 Ctsb "cathepsin B" [Rattus nor 0.784 0.646 0.369 2.2e-34
UNIPROTKB|E2R6Q7339 CTSB "Uncharacterized protein" 0.842 0.693 0.359 2.8e-34
UNIPROTKB|Q6IN22339 Ctsb "Cathepsin B" [Rattus nor 0.770 0.634 0.371 2.8e-34
ZFIN|ZDB-GENE-070323-1326 ctsbb "capthepsin B, b" [Danio 0.767 0.656 0.377 4.6e-34
UNIPROTKB|P07688335 CTSB "Cathepsin B" [Bos taurus 0.763 0.635 0.366 1.1e-32
MGI|MGI:88561339 Ctsb "cathepsin B" [Mus muscul 0.774 0.637 0.369 1.1e-32
TAIR|locus:505006093 AT1G02305 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 172/258 (66%), Positives = 197/258 (76%)

Query:     3 SSHLFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQF 62
             S+ +F    LLI      Q  A   +SK KL S ILQ+ I+KEVNENP AGWKA+ N +F
Sbjct:    11 SASVFFCLGLLISSFNLLQGIAAENLSKQKLTSWILQNEIVKEVNENPNAGWKASFNDRF 70

Query:    63 SNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGH 122
             +N TV +FK LLGVKPTPK   LGVP+ +HD SLKLPK FDAR+AW QC++I RILDQGH
Sbjct:    71 ANATVAEFKRLLGVKPTPKTEFLGVPIVSHDISLKLPKEFDARTAWSQCTSIGRILDQGH 130

Query:   123 CGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHG 182
             CGSCWAFGAVE+LSDRFCI + MN+SLSVN                 YPI+AWRYF HHG
Sbjct:   131 CGSCWAFGAVESLSDRFCIKYNMNVSLSVNDLLACCGFLCGQGCNGGYPIAAWRYFKHHG 190

Query:   183 VVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDI 242
             VVTEECDPYFD+TGCSHPGCEPAYPTPKC RKCV  NQLWR SKHY +SAY++ S P+DI
Sbjct:   191 VVTEECDPYFDNTGCSHPGCEPAYPTPKCARKCVSGNQLWRESKHYGVSAYKVRSHPDDI 250

Query:   243 MAEIYKNGPVEVSFTVYE 260
             MAE+YKNGPVEV+FTVYE
Sbjct:   251 MAEVYKNGPVEVAFTVYE 268
GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
GO:0050790 "regulation of catalytic activity" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2133402 AT4G01610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204873 AT1G02300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P07858 CTSB "Cathepsin B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621509 Ctsb "cathepsin B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6Q7 CTSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IN22 Ctsb "Cathepsin B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070323-1 ctsbb "capthepsin B, b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P07688 CTSB "Cathepsin B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:88561 Ctsb "cathepsin B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.22.10.824
3rd Layer3.4.220.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
cd02620236 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro 5e-80
pfam00112213 pfam00112, Peptidase_C1, Papain family cysteine pr 1e-50
smart00645175 smart00645, Pept_C1, Papain family cysteine protea 3e-34
cd02248210 cd02248, Peptidase_C1A, Peptidase C1A subfamily (M 9e-31
cd02621243 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al 7e-23
cd02698239 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th 2e-20
cd02619223 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS 6e-19
PTZ00200448 PTZ00200, PTZ00200, cysteine proteinase; Provision 2e-13
PTZ00364 548 PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs 4e-13
pfam0812741 pfam08127, Propeptide_C1, Peptidase family C1 prop 3e-11
PTZ00021489 PTZ00021, PTZ00021, falcipain-2; Provisional 3e-09
PTZ00203348 PTZ00203, PTZ00203, cathepsin L protease; Provisio 9e-09
PTZ00049693 PTZ00049, PTZ00049, cathepsin C-like protein; Prov 1e-08
COG4870372 COG4870, COG4870, Cysteine protease [Posttranslati 8e-04
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information 
 Score =  241 bits (617), Expect = 5e-80
 Identities = 87/169 (51%), Positives = 100/169 (59%), Gaps = 11/169 (6%)

Query: 99  PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLA 156
           P+SFDAR  WP C +I  I DQG+CGSCWAF AVEA SDR CI      N+ LS  DLL+
Sbjct: 1   PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60

Query: 157 CCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPG-----CEPAYPTPKC 211
           CC   CGDGC+GGYP +AW+Y    GVVT  C PY       HP      C   Y TPKC
Sbjct: 61  CCSG-CGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKC 119

Query: 212 VRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
              C    + +   KH   SAY + SD  DIM EI  NGPV+ +FTVYE
Sbjct: 120 QDGC---EKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYE 165

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional Back     alignment and domain information
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>gnl|CDD|203856 pfam08127, Propeptide_C1, Peptidase family C1 propeptide Back     alignment and domain information
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional Back     alignment and domain information
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional Back     alignment and domain information
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
KOG1542372 consensus Cysteine proteinase Cathepsin F [Posttra 100.0
PTZ00203348 cathepsin L protease; Provisional 100.0
KOG1543325 consensus Cysteine proteinase Cathepsin L [Posttra 100.0
PTZ00021489 falcipain-2; Provisional 100.0
PTZ00200448 cysteine proteinase; Provisional 100.0
cd02620236 Peptidase_C1A_CathepsinB Cathepsin B group; compos 100.0
cd02621243 Peptidase_C1A_CathepsinC Cathepsin C; also known a 100.0
KOG1544470 consensus Predicted cysteine proteinase TIN-ag [Ge 100.0
PTZ00049693 cathepsin C-like protein; Provisional 100.0
cd02698239 Peptidase_C1A_CathepsinX Cathepsin X; the only pap 100.0
cd02248210 Peptidase_C1A Peptidase C1A subfamily (MEROPS data 100.0
PTZ00364 548 dipeptidyl-peptidase I precursor; Provisional 100.0
PF00112219 Peptidase_C1: Papain family cysteine protease This 99.98
cd02619223 Peptidase_C1 C1 Peptidase family (MEROPS database 99.96
smart00645174 Pept_C1 Papain family cysteine protease. 99.94
PTZ00462 1004 Serine-repeat antigen protein; Provisional 99.94
COG4870372 Cysteine protease [Posttranslational modification, 99.15
PF0824658 Inhibitor_I29: Cathepsin propeptide inhibitor doma 98.41
PF0812741 Propeptide_C1: Peptidase family C1 propeptide; Int 98.04
cd00585 437 Peptidase_C1B Peptidase C1B subfamily (MEROPS data 98.0
PF03051 438 Peptidase_C1_2: Peptidase C1-like family This fami 97.86
smart0084857 Inhibitor_I29 Cathepsin propeptide inhibitor domai 97.72
COG3579 444 PepC Aminopeptidase C [Amino acid transport and me 95.15
KOG4128 457 consensus Bleomycin hydrolases and aminopeptidases 91.6
PF1139543 DUF2873: Protein of unknown function (DUF2873); In 82.54
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-51  Score=355.72  Aligned_cols=225  Identities=26%  Similarity=0.428  Sum_probs=177.0

Q ss_pred             hhccccc-ccchhhhccccChHHH--HHHHHcCCCCceEeecCCCCCCCCHHHHHhh-hCCCCCCCCCCCCCCccccccc
Q 023657           20 SQTFAEG-VVSKLKLDSHILQDSI--IKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKGLLLGVPVKTHDKS   95 (279)
Q Consensus        20 ~~~~~~~-~~~~~~~~~~i~~~~~--i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~-~~~~~~~~~~~~~~~~~~~~~~   95 (279)
                      ..+.+.| +..|...|..||..++  +++++.+...+-+.|+| +|||||+|||+++ ++.+..................
T Consensus        76 ~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~  154 (372)
T KOG1542|consen   76 IKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPG  154 (372)
T ss_pred             HhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCccccccCcCCCC
Confidence            3445555 4456677899999986  55577754458899999 9999999999994 4444321111011111112445


Q ss_pred             CCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHHH
Q 023657           96 LKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAW  175 (279)
Q Consensus        96 ~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~  175 (279)
                      ..||++||||++    |.||||||||.||||||||+++++|.++.|++++.+.||||||+||+.  +++||+||.+..||
T Consensus       155 ~~lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~nA~  228 (372)
T KOG1542|consen  155 ESLPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMDNAF  228 (372)
T ss_pred             CCCCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChhHHH
Confidence            689999999999    889999999999999999999999999999999999999999999996  78999999999999


Q ss_pred             HHHHh-hcccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCeE
Q 023657          176 RYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVE  253 (279)
Q Consensus       176 ~y~~~-~G~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv~  253 (279)
                      +|+.+ .|+..|++|||++..                .+.|....    ....+.|.+|. ++.||++|.+.|.++|||+
T Consensus       229 ~~~~~~gGL~~E~dYPY~g~~----------------~~~C~~~~----~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~  288 (372)
T KOG1542|consen  229 KYIKKAGGLEKEKDYPYTGKK----------------GNQCHFDK----SKIVVSIKDFSMLSNNEDQIAAWLVTFGPLS  288 (372)
T ss_pred             HHHHHhCCccccccCCccccC----------------CCccccch----hhceEEEeccEecCCCHHHHHHHHHhcCCeE
Confidence            99655 589999999998762                22666544    25567888888 8889999999999999999


Q ss_pred             EEEEecccCcCCcccccccccC
Q 023657          254 VSFTVYEVKQTLTLYSSTDFSA  275 (279)
Q Consensus       254 v~i~v~~~F~~Y~iY~~g~~~~  275 (279)
                      |+|++ ..++.   |.+||+..
T Consensus       289 vgiNa-~~mQ~---YrgGV~~P  306 (372)
T KOG1542|consen  289 VGINA-KPMQF---YRGGVSCP  306 (372)
T ss_pred             EEEch-HHHHH---hcccccCC
Confidence            99996 34554   56777655

>PTZ00203 cathepsin L protease; Provisional Back     alignment and domain information
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00021 falcipain-2; Provisional Back     alignment and domain information
>PTZ00200 cysteine proteinase; Provisional Back     alignment and domain information
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only] Back     alignment and domain information
>PTZ00049 cathepsin C-like protein; Provisional Back     alignment and domain information
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification Back     alignment and domain information
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>smart00645 Pept_C1 Papain family cysteine protease Back     alignment and domain information
>PTZ00462 Serine-repeat antigen protein; Provisional Back     alignment and domain information
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A Back     alignment and domain information
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC) Back     alignment and domain information
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism] Back     alignment and domain information
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
1pbh_A317 Crystal Structure Of Human Recombinant Procathepsin 4e-35
3ai8_B256 Cathepsin B In Complex With The Nitroxoline Length 3e-32
1mir_A322 Rat Procathepsin B Length = 322 4e-32
1gmy_A261 Cathepsin B Complexed With Dipeptidyl Nitrile Inhib 1e-31
3cbj_A266 Chagasin-cathepsin B Complex Length = 266 3e-31
3k9m_A254 Cathepsin B In Complex With Stefin A Length = 254 3e-31
1cpj_A260 Crystal Structures Of Recombinant Rat Cathepsin B A 5e-30
1ito_A256 Crystal Structure Analysis Of Bovine Spleen Catheps 9e-30
1cte_A254 Crystal Structures Of Recombinant Rat Cathepsin B A 1e-29
1qdq_A253 X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 3e-29
3qsd_A254 Structure Of Cathepsin B1 From Schistosoma Mansoni 2e-26
3hhi_A325 Crystal Structure Of Cathepsin B From T. Brucei In 1e-23
4hwy_A340 Trypanosoma Brucei Procathepsin B Solved From 40 Fs 1e-23
3mor_A317 Crystal Structure Of Cathepsin B From Trypanosoma B 1e-23
1huc_A47 The Refined 2.15 Angstroms X-Ray Crystal Structure 3e-16
1sp4_A48 Crystal Structure Of Ns-134 In Complex With Bovine 7e-16
1huc_B205 The Refined 2.15 Angstroms X-Ray Crystal Structure 2e-10
1sp4_B205 Crystal Structure Of Ns-134 In Complex With Bovine 2e-09
1ef7_A242 Crystal Structure Of Human Cathepsin X Length = 242 4e-06
1deu_A277 Crystal Structure Of Human Procathepsin X: A Cystei 5e-06
3qj3_A331 Structure Of Digestive Procathepsin L2 Proteinase F 4e-05
3pdf_A441 Discovery Of Novel Cyanamide-Based Inhibitors Of Ca 5e-05
2o6x_A310 Crystal Structure Of Procathepsin L1 From Fasciola 2e-04
3qt4_A329 Structure Of Digestive Procathepsin L 3 Of Tenebrio 2e-04
2fo5_A262 Crystal Structure Of Recombinant Barley Cysteine En 4e-04
1jqp_A438 Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric 4e-04
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 120/242 (49%), Gaps = 27/242 (11%)
Query: 36  HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV---KPTPKGLLLGVPVKTH 92
           H L D ++  VN+     W+A  N  F N  +   K L G     P P   ++       
Sbjct: 8   HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVM------F 58
Query: 93  DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN 152
            + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+
Sbjct: 59  TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVS 118
Query: 153 XXXXXX--XXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTGCS 198
                              YP  AW ++   G+V+         C PY           S
Sbjct: 119 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 178
Query: 199 HPGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFT 257
            P C     TPKC + C    +  ++  KHY  ++Y +++  +DIMAEIYKNGPVE +F+
Sbjct: 179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238
Query: 258 VY 259
           VY
Sbjct: 239 VY 240
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 Back     alignment and structure
>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 Back     alignment and structure
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 Back     alignment and structure
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 Back     alignment and structure
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 Back     alignment and structure
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 Back     alignment and structure
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 Back     alignment and structure
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 Back     alignment and structure
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 Back     alignment and structure
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 Back     alignment and structure
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325 Back     alignment and structure
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340 Back     alignment and structure
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317 Back     alignment and structure
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 47 Back     alignment and structure
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 48 Back     alignment and structure
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205 Back     alignment and structure
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205 Back     alignment and structure
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242 Back     alignment and structure
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277 Back     alignment and structure
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331 Back     alignment and structure
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441 Back     alignment and structure
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310 Back     alignment and structure
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329 Back     alignment and structure
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262 Back     alignment and structure
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 8e-97
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 6e-92
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 1e-78
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 8e-77
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 5e-69
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 8e-68
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 4e-52
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 2e-37
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 2e-19
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 3e-19
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 2e-18
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 3e-18
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 5e-18
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 6e-18
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 2e-17
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 2e-17
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 1e-15
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 1e-15
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 1e-15
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 1e-15
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 2e-15
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 2e-15
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 3e-15
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 4e-15
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 5e-15
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 6e-15
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 8e-15
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 8e-15
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 1e-14
1cqd_A221 Protein (protease II); cysteine protease, glycopro 1e-14
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 1e-14
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 2e-14
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 2e-14
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 2e-14
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 3e-14
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 5e-14
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 6e-14
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 7e-14
3u8e_A222 Papain-like cysteine protease; papain-like cystein 4e-10
3pw3_A 383 Aminopeptidase C; bleomycin, cysteine proteinase f 2e-05
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325 Back     alignment and structure
 Score =  286 bits (734), Expect = 8e-97
 Identities = 90/248 (36%), Positives = 121/248 (48%), Gaps = 18/248 (7%)

Query: 34  DSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGV--KPTPKGLLLGVPVKT 91
           D+ +L  + +  VN   +  WKA  +    N T+ + K L GV  K     +L       
Sbjct: 6   DAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTE 65

Query: 92  HDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLS 150
            +    LP SFD+  AWP C TI +I DQ  CGSCWA  A  A+SDRFC   G  ++ +S
Sbjct: 66  EEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHIS 125

Query: 151 VNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP--- 207
             DLLACC   CGDGC+GG P  AW YF   G+V++ C PY       H   +  YP   
Sbjct: 126 AGDLLACCSD-CGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCS 184

Query: 208 -----TPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEVK 262
                TPKC   C           + S ++Y +  + +D M E++  GP EV+F VYE  
Sbjct: 185 QFNFDTPKCDYTCDDPT--IPVVNYRSWTSYALQGE-DDYMRELFFRGPFEVAFDVYE-- 239

Query: 263 QTLTLYSS 270
                Y+S
Sbjct: 240 -DFIAYNS 246
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317 Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266 Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441 Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277 Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291 Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265 Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329 Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314 Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322 Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316 Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216 Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218 Back     alignment and structure
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331 Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220 Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241 Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214 Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262 Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229 Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215 Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215 Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246 Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208 Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 100.0
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 100.0
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 100.0
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 100.0
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 100.0
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 100.0
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 100.0
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 100.0
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 100.0
3tnx_A363 Papain; hydrolase, cytoplasm for recombinant expre 100.0
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 100.0
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 100.0
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 100.0
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 100.0
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 100.0
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 100.0
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 100.0
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 100.0
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 100.0
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 100.0
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 100.0
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 100.0
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 100.0
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 100.0
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 100.0
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 100.0
1cqd_A221 Protein (protease II); cysteine protease, glycopro 100.0
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 100.0
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 100.0
3u8e_A222 Papain-like cysteine protease; papain-like cystein 100.0
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 100.0
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 100.0
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 100.0
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 100.0
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 100.0
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 100.0
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 100.0
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 100.0
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 100.0
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 100.0
2cb5_A 453 Protein (bleomycin hydrolase); aminopeptidase, cys 99.88
2e01_A 457 Cysteine proteinase 1; bleomycin hydrolase, thiol 99.83
3pw3_A 383 Aminopeptidase C; bleomycin, cysteine proteinase f 99.83
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 98.56
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 98.43
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* Back     alignment and structure
Probab=100.00  E-value=2e-54  Score=387.96  Aligned_cols=231  Identities=39%  Similarity=0.762  Sum_probs=146.0

Q ss_pred             hccccChHHHHHHHHcCCCCceEeecCCCCCCCCHHHHHhhhCCCCCCCC--CCCCCCcccccccCCCCCccccccCCCC
Q 023657           33 LDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKG--LLLGVPVKTHDKSLKLPKSFDARSAWPQ  110 (279)
Q Consensus        33 ~~~~i~~~~~i~~~N~~~~~~~~~g~n~~fsd~t~~ef~~~~~~~~~~~~--~~~~~~~~~~~~~~~lP~~~D~R~~~~~  110 (279)
                      +...++.+++|++||++++.+|++++|++|+|||.+||++++|..+.+..  .....+....+...+||++||||++||+
T Consensus         5 ~~a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~   84 (325)
T 3hhi_A            5 EDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPN   84 (325)
T ss_dssp             ---------------------------------------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTT
T ss_pred             cccccccHHHHHHHHhCCCCceEEecccccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCC
Confidence            34567788899999997678999999978999999999998876543322  1111111111223689999999999999


Q ss_pred             CCcccccccccCccchhHHhhHHHHHHHHHHHhCC-ccccchhhhhhhcCCCCCCCCCCCChHHHHHHHHhhcccccccc
Q 023657          111 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM-NLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECD  189 (279)
Q Consensus       111 ~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~-~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~y~~~~G~~~e~~y  189 (279)
                      ||.|+||||||.||||||||++++||++++|+++. .+.||+|+|+||+. .++.||+||++..||+|++++|+++|+||
T Consensus        85 ~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~-~~~~GC~GG~~~~A~~yi~~~Gi~~e~~y  163 (325)
T 3hhi_A           85 CPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCS-DCGDGCNGGDPDRAWAYFSSTGLVSDYCQ  163 (325)
T ss_dssp             CTTTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCG-GGBCTTBCBCHHHHHHHHHHTCBCBTTTS
T ss_pred             CCccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhcc-CCCCCCCCCCHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999999999999999997 89999999999986 35689999999999999999999999999


Q ss_pred             cCC-CCCCCCC--------CCCC-CCCCCcccccccccccccccccceEEeeeEEeCCCHHHHHHHHHhCCCeEEEEEec
Q 023657          190 PYF-DSTGCSH--------PGCE-PAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVY  259 (279)
Q Consensus       190 PY~-~~~~c~~--------~~c~-~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~v~  259 (279)
                      ||. +.  |.+        ++|. ..+.++.|...|....  +.....+.+..|.+ .++++||++|+++|||+|+|+++
T Consensus       164 PY~~~~--c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~--~~~~~~~~~~~y~v-~~~~~i~~~i~~~GPV~v~i~~~  238 (325)
T 3hhi_A          164 PYPFPH--CSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPT--IPVVNYRSWTSYAL-QGEDDYMRELFFRGPFEVAFDVY  238 (325)
T ss_dssp             CCSSCC--CBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTT--SCCCCBCEEEEEEE-CSHHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCcccc--ccccccccccCCCCCCcccCCcchhhcccccc--cccceEEeecceEe-CCHHHHHHHHHHCCCEEEEEEec
Confidence            996 43  433        4565 3455677877776332  22344556778887 88999999999999999999999


Q ss_pred             ccCcCCc--ccc
Q 023657          260 EVKQTLT--LYS  269 (279)
Q Consensus       260 ~~F~~Y~--iY~  269 (279)
                      ++|++|+  ||.
T Consensus       239 ~~f~~Y~~GVy~  250 (325)
T 3hhi_A          239 EDFIAYNSGVYH  250 (325)
T ss_dssp             HHHHTCCSSEEC
T ss_pred             cccccccCceec
Confidence            8999876  554
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Back     alignment and structure
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Back     alignment and structure
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A* Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0 Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Back     alignment and structure
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A Back     alignment and structure
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 279
d1gmya_254 d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens 1e-41
d1m6da_214 d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta 6e-24
d1iwda_215 d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia 2e-23
d1aeca_218 d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi 2e-23
d1cqda_216 d.3.1.1 (A:) Proline-specific cysteine protease {G 6e-23
d1fh0a_221 d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens 7e-23
g8pch.1228 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax 2e-22
d1deua_275 d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens 5e-22
d2oula1241 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip 9e-22
d2h7ja1217 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa 9e-22
d1o0ea_208 d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv 3e-21
d1s4va_224 d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor 4e-21
g1k3b.1233 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase 4e-21
d1yala_218 d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [ 7e-21
d1ppoa_216 d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca 8e-21
d1me4a_215 d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56 1e-20
d1khqa_212 d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId 9e-20
d2r6na1215 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa 3e-19
d1cs8a_316 d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens 6e-18
d1xkga1302 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1e-11
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 1e-41
 Identities = 87/179 (48%), Positives = 110/179 (61%), Gaps = 15/179 (8%)

Query: 97  KLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDL 154
           KLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH    +++ +S  DL
Sbjct: 1   KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60

Query: 155 LACCGFLCGDGCDGGYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH-----PGC 202
           L CCG +CGDGC+GGYP  AW ++   G+V+         C PY       H     P C
Sbjct: 61  LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120

Query: 203 EPAYPTPKCVRKCVK-KNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE 260
                TPKC + C    +  ++  KHY  ++Y +++  +DIMAEIYKNGPVE +F+VY 
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 179
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215 Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218 Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216 Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221 Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241 Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208 Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224 Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218 Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216 Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215 Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212 Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 Back     information, alignment and structure
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d1cs8a_316 (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 100.0
d1xkga1302 Major mite fecal allergen der p 1 {House-dust mite 100.0
d1gmya_254 (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960 100.0
g1k3b.1233 Cathepsin C (dipeptidyl peptidase I), catalytic do 99.98
d1ppoa_216 Caricain (protease omega) {Papaya (Carica papaya) 99.98
d1deua_275 (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960 99.98
d2oula1241 Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} 99.97
d1yala_218 Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} 99.97
d1fh0a_221 (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960 99.97
g8pch.1228 Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]} 99.97
d1cqda_216 Proline-specific cysteine protease {Ginger rhizome 99.97
d2r6na1215 (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960 99.97
d1m6da_214 Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1aeca_218 Actinidin {Chinese gooseberry or kiwifruit (Actini 99.97
d1khqa_212 Papain {Papaya (Carica papaya) [TaxId: 3649]} 99.97
d1iwda_215 Ervatamin B {Adam's apple (Ervatamia coronaria) [T 99.97
d1me4a_215 Cruzain {Trypanosoma cruzi [TaxId: 5693]} 99.96
d2h7ja1217 (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960 99.96
d1o0ea_208 Ervatamin C {East indian rosebay (Ervatamia corona 99.96
d1s4va_224 Vignain (bean endopeptidase) {Castor bean (Ricinus 99.96
d3gcba_ 458 Bleomycin hydrolase {Baker's yeast (Saccharomyces 98.16
d2cb5a_ 453 Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 97.99
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=322.89  Aligned_cols=219  Identities=23%  Similarity=0.365  Sum_probs=172.5

Q ss_pred             hhcccccccchhhhccccChHHH--HHHHHcC---CCCceEeecCCCCCCCCHHHHHhhhCCCCCCCCCCCCCCcccccc
Q 023657           20 SQTFAEGVVSKLKLDSHILQDSI--IKEVNEN---PKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK   94 (279)
Q Consensus        20 ~~~~~~~~~~~~~~~~~i~~~~~--i~~~N~~---~~~~~~~g~n~~fsd~t~~ef~~~~~~~~~~~~~~~~~~~~~~~~   94 (279)
                      ..+.|.|..+|+..|+.||.+++  |++||++   .+.+|++|+| +|+|||.+||++++...........  .....+.
T Consensus        17 ~~~~K~Y~~~ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N-~fsDlt~eEf~~~~~~~~~~~~~~~--~~~~~~~   93 (316)
T d1cs8a_          17 AMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN-AFGDMTSEEFRQVMNGFQNRKPRKG--KVFQEPL   93 (316)
T ss_dssp             HHTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCC-TTTTCCHHHHHHHHCCBCCCCCSCC--EECCCCT
T ss_pred             HHhCCcCCCHHHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEece-eccccCcHHHHhhhccccccccccC--ccccCcc
Confidence            45678888889999999999974  9999975   4579999999 9999999999997665433222211  1112234


Q ss_pred             cCCCCCccccccCCCCCCcccccccccCccchhHHhhHHHHHHHHHHHhCCccccchhhhhhhcCCCCCCCCCCCChHHH
Q 023657           95 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISA  174 (279)
Q Consensus        95 ~~~lP~~~D~R~~~~~~~~v~pv~nQg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a  174 (279)
                      ..+||++||||++    |.++||||||.||||||||+++++|++++++++..+.||+|||+||+....+.||.||++..|
T Consensus        94 ~~~lP~s~Dwr~~----g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~~~~~~~~c~gg~~~~a  169 (316)
T d1cs8a_          94 FYEAPRSVDWREK----GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYA  169 (316)
T ss_dssp             TCCCCSCEEGGGG----TCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHH
T ss_pred             cccCCCceECCcC----CcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhccccccCCCCCCCchHHH
Confidence            5689999999998    889999999999999999999999999999999999999999999986445789999999999


Q ss_pred             HHHHHhhc-ccccccccCCCCCCCCCCCCCCCCCCcccccccccccccccccceEEeeeEE-eCCCHHHHHHHHHhCCCe
Q 023657          175 WRYFVHHG-VVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPV  252 (279)
Q Consensus       175 ~~y~~~~G-~~~e~~yPY~~~~~c~~~~c~~~~~~~~c~~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~ik~~l~~~GPv  252 (279)
                      ++|++.+| +..|.+|||.+..                 ..|....    ......+..+. ...+++.|+++|+.+|||
T Consensus       170 ~~y~~~~g~~~~e~~~~~~~~~-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~gpv  228 (316)
T d1cs8a_         170 FQYVQDNGGLDSEESYPYEATE-----------------ESCKYNP----KYSVANDAGFVDIPKQEKALMKAVATVGPI  228 (316)
T ss_dssp             HHHHHHHTCEEBTTTSCCCSSC-----------------CCCCCCG----GGEEECCCCEEECCSCHHHHHHHHHHHCCE
T ss_pred             HHHHHhcCcccccccccccccc-----------------ccccccc----ccccccccccccccCcHHHHHHHHHHhCCe
Confidence            99999997 6678888885431                 1222111    02223344455 567889999999999999


Q ss_pred             EEEEEec-ccCcCCc
Q 023657          253 EVSFTVY-EVKQTLT  266 (279)
Q Consensus       253 ~v~i~v~-~~F~~Y~  266 (279)
                      +|++.+. ++|.+|+
T Consensus       229 ~v~i~~~~~~f~~y~  243 (316)
T d1cs8a_         229 SVAIDAGHESFLFYK  243 (316)
T ss_dssp             EEEECCCSHHHHTEE
T ss_pred             EEEEEeccchhcccc
Confidence            9999985 5677765
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure