Citrus Sinensis ID: 023660
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 279 | ||||||
| 147855567 | 401 | hypothetical protein VITISV_021624 [Viti | 0.892 | 0.620 | 0.658 | 1e-89 | |
| 302143284 | 390 | unnamed protein product [Vitis vinifera] | 0.892 | 0.638 | 0.658 | 1e-89 | |
| 225446343 | 401 | PREDICTED: uncharacterized protein LOC10 | 0.892 | 0.620 | 0.658 | 2e-89 | |
| 224121688 | 362 | predicted protein [Populus trichocarpa] | 0.824 | 0.635 | 0.689 | 6e-88 | |
| 145335042 | 381 | DTW domain-containing protein [Arabidops | 0.849 | 0.622 | 0.616 | 2e-84 | |
| 145362221 | 309 | DTW domain-containing protein [Arabidops | 0.849 | 0.766 | 0.616 | 4e-84 | |
| 449444356 | 380 | PREDICTED: uncharacterized protein LOC10 | 0.856 | 0.628 | 0.633 | 7e-84 | |
| 124300982 | 278 | At1g03687 [Arabidopsis thaliana] | 0.774 | 0.776 | 0.648 | 3e-83 | |
| 449522414 | 382 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.860 | 0.628 | 0.626 | 3e-82 | |
| 9280650 | 407 | F21B7.29 [Arabidopsis thaliana] | 0.849 | 0.582 | 0.557 | 3e-80 |
| >gi|147855567|emb|CAN81333.1| hypothetical protein VITISV_021624 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/258 (65%), Positives = 191/258 (74%), Gaps = 9/258 (3%)
Query: 8 ISRAFSFTCMFKLCRPLFALSTRTHME----SPRVN---SALRSPARETHIGDTDDG-FI 59
+S A F C FK + L ++T ME SP+ S SP RE D G I
Sbjct: 2 LSTARVFACNFKPSQSP-PLRSKTQMEARTRSPQSTFSRSGSLSPPRERLREDNGGGTAI 60
Query: 60 TLQEWQGWGAVSPLPALVQQIVEDLKALEKNFDAPMSFGGNGGRLQGDFKILEDKKHRAT 119
LQEWQGWG SPLP V +IV +LK LEK+F+A MSFGG GG+LQGDFKI EDKKHRAT
Sbjct: 61 ALQEWQGWGTESPLPERVAEIVHELKYLEKDFNAQMSFGGVGGKLQGDFKIQEDKKHRAT 120
Query: 120 YQTLGESEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLY 179
YQ LG+SEKKLQFF+ARQIACRLLGS+GYLCQKCW+A+EDCMCSKV C LW+G+RFWLY
Sbjct: 121 YQALGDSEKKLQFFSARQIACRLLGSRGYLCQKCWLALEDCMCSKVIPCXLWHGIRFWLY 180
Query: 180 MHPKDFLRQNNTGKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRAGKSKVWCLYPNKNA 239
MHPKDFLRQNNTGKLLWQV GV+AATLCL+G+AE EEIMW+ F AGKS VWCLYPNKNA
Sbjct: 181 MHPKDFLRQNNTGKLLWQVFGVKAATLCLFGIAEHEEIMWNTFALAGKSNVWCLYPNKNA 240
Query: 240 IKMSVQDTLGYGSSEDLE 257
SVQD S LE
Sbjct: 241 PTKSVQDIFAQESLGGLE 258
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143284|emb|CBI21845.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225446343|ref|XP_002273967.1| PREDICTED: uncharacterized protein LOC100267683 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224121688|ref|XP_002330628.1| predicted protein [Populus trichocarpa] gi|222872232|gb|EEF09363.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|145335042|ref|NP_171865.4| DTW domain-containing protein [Arabidopsis thaliana] gi|332189476|gb|AEE27597.1| DTW domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|145362221|ref|NP_973753.2| DTW domain-containing protein [Arabidopsis thaliana] gi|332189477|gb|AEE27598.1| DTW domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449444356|ref|XP_004139941.1| PREDICTED: uncharacterized protein LOC101203963 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|124300982|gb|ABN04743.1| At1g03687 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449522414|ref|XP_004168221.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101231628 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|9280650|gb|AAF86519.1|AC002560_12 F21B7.29 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 279 | ||||||
| TAIR|locus:2825052 | 381 | AT1G03687 "AT1G03687" [Arabido | 0.849 | 0.622 | 0.616 | 2.9e-80 |
| TAIR|locus:2825052 AT1G03687 "AT1G03687" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 151/245 (61%), Positives = 187/245 (76%)
Query: 12 FSFTCMFKLCRPLFALSTRTHMESPRVNSALRSPARETHIGDTDDGFITLQEWQGWGAVS 71
FS + +F R L A+ R M S S LRS RE + D+G I+++EW+ WG VS
Sbjct: 12 FSPSLLFHR-RNLVAVGQRLLMTS----SILRSHTREFDV--CDEGIISVEEWRKWGPVS 64
Query: 72 PLPALVQQIVEDLKALEKNFDAPMSFGGNGGRLQGDFKILEDKKHRATYQTLGESEKKLQ 131
P P+ V+QIV+DLK LE D+P+ FGGNGG+LQG F EDKKHRATY+ L + EKK +
Sbjct: 65 PFPSAVKQIVDDLKVLECKLDSPIDFGGNGGKLQGPFGAYEDKKHRATYEALDDPEKKFR 124
Query: 132 FFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNT 191
FF+ARQ+ACRLLGS+GYLCQKCW+AMEDCMCS VK C LW +RFWLYMHP+DFLRQNNT
Sbjct: 125 FFSARQVACRLLGSRGYLCQKCWLAMEDCMCSYVKPCGLWKRIRFWLYMHPRDFLRQNNT 184
Query: 192 GKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRAGKSKVWCLYPNKNA-IKMSVQDTLGY 250
GKLLWQ+ GVQ+ATLC++G+AEDEEIMW+ FKRAGKS+V CLYPN N+ + SV+D G
Sbjct: 185 GKLLWQIFGVQSATLCVFGIAEDEEIMWNEFKRAGKSQVRCLYPNHNSEVTFSVKDAFGS 244
Query: 251 GSSED 255
+SE+
Sbjct: 245 SASEN 249
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 279 279 0.00081 115 3 11 22 0.44 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 615 (65 KB)
Total size of DFA: 235 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.70u 0.18s 22.88t Elapsed: 00:00:01
Total cpu time: 22.70u 0.18s 22.88t Elapsed: 00:00:01
Start: Fri May 10 13:34:22 2013 End: Fri May 10 13:34:23 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 279 | |||
| pfam03942 | 196 | pfam03942, DTW, DTW domain | 4e-12 |
| >gnl|CDD|217805 pfam03942, DTW, DTW domain | Back alignment and domain information |
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Score = 63.2 bits (154), Expect = 4e-12
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 147 GYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNTGKLLWQVLGVQAATL 206
+ C++C + ++ C+C+ + L + + HP + R NTG+LL L + A T
Sbjct: 2 RFRCERCCVPVKHCLCAYL--PPLEAPTQVDILQHPNESDRPLNTGRLL--ALLL-ADTR 56
Query: 207 CLYG--VAEDEEIMWSAFKRAGKSKVWCLYPNKNAI 240
D +V L+P + +
Sbjct: 57 AFTWSRTEPDPR--LLELLALPDYQVVLLFPGETSE 90
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This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after. Length = 196 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 279 | |||
| COG3148 | 231 | Uncharacterized conserved protein [Function unknow | 100.0 | |
| PF03942 | 203 | DTW: DTW domain; InterPro: IPR005636 This presumed | 99.9 | |
| KOG4382 | 276 | consensus Uncharacterized conserved protein, conta | 96.89 |
| >COG3148 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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Probab=100.00 E-value=2e-42 Score=310.55 Aligned_cols=138 Identities=19% Similarity=0.383 Sum_probs=127.6
Q ss_pred cccccchhhhhhhhhhhccccchhhhHHHhhcCCCcccccccCCcCCCcccCCCcCCccccCcEEEEEecCCcccCCCch
Q 023660 112 EDKKHRATYQTLGESEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYGVRFWLYMHPKDFLRQNNT 191 (279)
Q Consensus 112 edkkhrl~~qrLa~S~rk~~pF~ARq~~~r~lGsr~~rC~~C~Lp~~~CICs~vp~~~L~s~irF~LLMHpnE~lKpSNT 191 (279)
|+--|+||++||++|+| ||.|| |++..+|+.|+++..+|+|+++|+.. ++++|+|||||+|++|||||
T Consensus 2 ~~a~~~l~~~rl~r~t~---pf~ar-------g~~~~rC~~C~l~~~~CLCa~ip~~e--a~~~~~Ll~hdtE~~kpsNT 69 (231)
T COG3148 2 ENAVLQLRQERLARATR---PFLAR-------GNRVRRCQRCLLPEKHCLCATIPPLE--ARSRFCLLMHDTEPMKPSNT 69 (231)
T ss_pred chHHHHHHHHHHHHhhc---hhhhc-------CCcchhhhhhCChhhhccccCcCCcc--cceeEEEEecCccccCCCcc
Confidence 34458999999999999 99999 99999999999999999999999955 99999999999999999999
Q ss_pred hhHHHHhhhccchhhcccCCCccHHHHHHHHHhcCCCceEEEecCCCCCcceeeecccCCCCCCCccCCCCCCceeEEEe
Q 023660 192 GKLLWQVLGVQAATLCLYGVAEDEEIMWSAFKRAGKSKVWCLYPNKNAIKMSVQDTLGYGSSEDLEYTPMMAVTQMLVLL 271 (279)
Q Consensus 192 GRLIadvLp~dt~af~~WgRtE~E~~LW~rl~~~p~~qp~lLFPse~s~~~s~v~~~~~~~s~~~~~~~~~~K~PLFILL 271 (279)
||||+|+++ |+++|. |+|+++++.|.+++++ |+|+||||||++|+.+.+++. ... ..+|+|+||||
T Consensus 70 grliad~l~-dt~a~~-wsRte~~~eLl~ll~~-P~~~p~lvfP~e~a~e~t~v~----------~~~-p~~k~plfIll 135 (231)
T COG3148 70 GRLIADILA-DTRAFQ-WSRTEPNPELLALLAN-PDYQPYLVFPAEYAEELTEVI----------STA-PAEKPPLFILL 135 (231)
T ss_pred hhHHHHhhh-hhhhhh-ccccCCCHHHHHHHhC-CCCceEEEcchHHHHHHHHHh----------hcc-cccCCceEEEe
Confidence 999999999 999998 9999999999999999 999999999999999998873 112 23589999999
Q ss_pred cccc
Q 023660 272 HRLM 275 (279)
Q Consensus 272 DGT~ 275 (279)
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T Consensus 136 DgTW 139 (231)
T COG3148 136 DGTW 139 (231)
T ss_pred cCcc
Confidence 9994
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| >PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins | Back alignment and domain information |
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| >KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00