Citrus Sinensis ID: 023665


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPN
cHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccc
cHHHHHHHHHHHHHHHHHHHccccHEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEHcccHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHcHHHHHHHHHccccccccccccccc
MSVCLQVGYQLLFFVITALFkfdkvtdfagsTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPvtvvnasdrdpsvqaVDVIGWIMWSVGVSIEAIADQQklsfknspenrgkwcnvgfwkysrhpnyfgeIFLWWGIFVastpvldgaeWLVILGPIFLTLLLLFISGiplleesadkkfgnmpayrlykkttspliplppvvygnlpWWLKTILFelplysrnfpqegpn
MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQklsfknspenrgKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLysrnfpqegpn
MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGlrlalfllmrilNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWlvilgpifltllllfisgipllEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPN
**VCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK****NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYS*********
MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPL***********
MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPN
MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRN*******
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPPVVYGNLPWWLKTILFELPLYSRNFPQEGPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
297734310307 unnamed protein product [Vitis vinifera] 1.0 0.908 0.825 1e-134
359491022291 PREDICTED: uncharacterized protein LOC10 1.0 0.958 0.825 1e-134
449439449300 PREDICTED: uncharacterized protein LOC10 1.0 0.93 0.785 1e-124
224133212292 predicted protein [Populus trichocarpa] 0.992 0.948 0.823 1e-124
357118017293 PREDICTED: uncharacterized protein LOC10 0.992 0.945 0.767 1e-123
363807524290 uncharacterized protein LOC100780288 [Gl 0.985 0.948 0.764 1e-122
255583469310 conserved hypothetical protein [Ricinus 0.992 0.893 0.784 1e-122
259490034291 uncharacterized protein LOC100304216 [Ze 0.967 0.927 0.774 1e-121
413933316293 putative domain of unknown function (DUF 0.967 0.921 0.774 1e-121
115454871291 Os03g0708400 [Oryza sativa Japonica Grou 0.992 0.951 0.777 1e-121
>gi|297734310|emb|CBI15557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/280 (82%), Positives = 253/280 (90%), Gaps = 1/280 (0%)

Query: 1   MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAV 60
           ++  + VGYQ LFF+ITAL KFDKVTDFAGSTNF+I+A+LTL+LKG+WHFRQVVLT L V
Sbjct: 12  LTAIVTVGYQFLFFIITALLKFDKVTDFAGSTNFVILAVLTLVLKGTWHFRQVVLTLLVV 71

Query: 61  VWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRD 120
           +WGLRL +FLLMRIL WGEDRRFDEMRSNLGKLA+FW FQAVWVWTVSLPVT+VNAS RD
Sbjct: 72  IWGLRLGIFLLMRILQWGEDRRFDEMRSNLGKLAVFWTFQAVWVWTVSLPVTIVNASGRD 131

Query: 121 PSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIF 180
           PS+QA D+IGWIMWSVG++IEA ADQQKLSFKNSPENRGKWCNVG WKY+RHPNYFGEI 
Sbjct: 132 PSLQAADIIGWIMWSVGITIEASADQQKLSFKNSPENRGKWCNVGVWKYTRHPNYFGEIL 191

Query: 181 LWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKT 240
           LWWGIFVASTPVL+GAEWLVILGPIFLTLLLLF+SGIPLLEESADKKFGN+  YRLYK T
Sbjct: 192 LWWGIFVASTPVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFGNVAGYRLYKST 251

Query: 241 TSPLIPLPPVVYGNLPWWLKTI-LFELPLYSRNFPQEGPN 279
           TSPL+PLPPVVYGNLP W KT  L E P YSRN PQEG N
Sbjct: 252 TSPLVPLPPVVYGNLPSWFKTTFLLEFPFYSRNLPQEGQN 291




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491022|ref|XP_003634205.1| PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439449|ref|XP_004137498.1| PREDICTED: uncharacterized protein LOC101219154 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133212|ref|XP_002321511.1| predicted protein [Populus trichocarpa] gi|222868507|gb|EEF05638.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357118017|ref|XP_003560756.1| PREDICTED: uncharacterized protein LOC100830682 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|363807524|ref|NP_001241888.1| uncharacterized protein LOC100780288 [Glycine max] gi|255636515|gb|ACU18596.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255583469|ref|XP_002532493.1| conserved hypothetical protein [Ricinus communis] gi|223527792|gb|EEF29892.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|259490034|ref|NP_001159138.1| uncharacterized protein LOC100304216 [Zea mays] gi|223942193|gb|ACN25180.1| unknown [Zea mays] gi|413933315|gb|AFW67866.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|413933316|gb|AFW67867.1| putative domain of unknown function (DUF1295) containing family protein [Zea mays] Back     alignment and taxonomy information
>gi|115454871|ref|NP_001051036.1| Os03g0708400 [Oryza sativa Japonica Group] gi|13937298|gb|AAK50129.1|AC087797_14 unknown protein [Oryza sativa Japonica Group] gi|108710687|gb|ABF98482.1| expressed protein [Oryza sativa Japonica Group] gi|113549507|dbj|BAF12950.1| Os03g0708400 [Oryza sativa Japonica Group] gi|125545445|gb|EAY91584.1| hypothetical protein OsI_13219 [Oryza sativa Indica Group] gi|125587653|gb|EAZ28317.1| hypothetical protein OsJ_12291 [Oryza sativa Japonica Group] gi|215694680|dbj|BAG89871.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
TAIR|locus:2027774302 AT1G73650 [Arabidopsis thalian 0.992 0.917 0.640 3.3e-95
TAIR|locus:2194090305 AT1G18180 [Arabidopsis thalian 0.989 0.904 0.635 4.2e-95
FB|FBgn0035914316 CG6282 [Drosophila melanogaste 0.931 0.822 0.419 5.5e-54
ZFIN|ZDB-GENE-030131-3630288 si:ch211-210c8.6 "si:ch211-210 0.863 0.836 0.373 4.5e-43
UNIPROTKB|G4N6G0335 MGG_03731 "Uncharacterized pro 0.698 0.582 0.428 4.6e-41
UNIPROTKB|Q74AM9256 GSU2323 "Uncharacterized prote 0.824 0.898 0.308 5e-28
TIGR_CMR|GSU_2323256 GSU_2323 "membrane protein, pu 0.824 0.898 0.308 5e-28
DICTYBASE|DDB_G0279829267 DDB_G0279829 "DUF1295 family p 0.842 0.880 0.298 5.2e-26
UNIPROTKB|G4NC19328 MGG_00459 "Uncharacterized pro 0.519 0.442 0.337 1.4e-22
UNIPROTKB|Q722V9257 LMOf2365_0620 "Putative membra 0.663 0.719 0.298 1.9e-21
TAIR|locus:2027774 AT1G73650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 178/278 (64%), Positives = 201/278 (72%)

Query:     1 MSVCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAV 60
             ++  + V YQ +FFVITALFKFD+VTDFAGSTNF+I+A+LTL+LK SWHFRQ+VLT L V
Sbjct:    12 LTAIVTVIYQFIFFVITALFKFDQVTDFAGSTNFVILAVLTLVLKASWHFRQIVLTLLVV 71

Query:    61 VWGXXXXXXXXXXXXNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRD 120
             VWG             WGEDRRFDE R N+ +L IFW  QAVWVWTVSLP+T+VNASD  
Sbjct:    72 VWGLRLGIFLLMRILQWGEDRRFDEQRGNIVRLIIFWTLQAVWVWTVSLPLTLVNASDGG 131

Query:   121 PSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIF 180
              S++  DVIGW MW  G  IEA ADQQKLSFKNSPENRGKWC+VG WKYSRHPNYFGE+ 
Sbjct:   132 GSLKPADVIGWTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDVGVWKYSRHPNYFGEML 191

Query:   181 LWWGIFVASTPVLDGAEWXXXXXXXXXXXXXXXXXXXXXXEESADKKFGNMPAYRLYKKT 240
             LWWGIFVA++PVL+GAE+                      E SADKK GN  AYR YKKT
Sbjct:   192 LWWGIFVAASPVLEGAEYLVIFGPLFLTLLLLFVSGIPLLEASADKKHGNSGAYRSYKKT 251

Query:   241 TSPLIPLPPVVYGNLPWWLKTI-LFELPLYSRNFPQEG 277
             TSPLI  P  VYGNLP W KT+ LFE P YSRN PQEG
Sbjct:   252 TSPLILFPRGVYGNLPGWFKTVFLFEFPFYSRNLPQEG 289




GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
GO:0010224 "response to UV-B" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2194090 AT1G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0035914 CG6282 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3630 si:ch211-210c8.6 "si:ch211-210c8.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4N6G0 MGG_03731 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AM9 GSU2323 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2323 GSU_2323 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279829 DDB_G0279829 "DUF1295 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4NC19 MGG_00459 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q722V9 LMOf2365_0620 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
pfam06966235 pfam06966, DUF1295, Protein of unknown function (D 4e-99
COG3752272 COG3752, COG3752, Steroid 5-alpha reductase family 8e-42
>gnl|CDD|219244 pfam06966, DUF1295, Protein of unknown function (DUF1295) Back     alignment and domain information
 Score =  289 bits (742), Expect = 4e-99
 Identities = 111/235 (47%), Positives = 153/235 (65%), Gaps = 6/235 (2%)

Query: 13  FFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLM 72
           F++I+       + D A    F+I+A+LT +L      R++++T L  +WGLRL   LL 
Sbjct: 1   FWLISRRTGNYGLVDVAWGGGFVILAVLTALLSEGATLRRMLVTLLVTLWGLRLGWHLLR 60

Query: 73  RILNWGEDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV 126
           R   WGED R+ ++R N GK      L IF+I QAV ++ VSLPV + NAS  +P++ A 
Sbjct: 61  RTWGWGEDYRYVDLRKNWGKWPYLLSLLIFFILQAVLLYIVSLPVYLANASGPNPALGAW 120

Query: 127 DVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIF 186
           D+IG  +W VG+  EA+ADQQ  +FK  P N+GK C+ G W+YSRHPNYFGE  +WWGIF
Sbjct: 121 DIIGIAIWLVGIGFEALADQQLWAFKGDPANKGKVCDTGLWRYSRHPNYFGEALIWWGIF 180

Query: 187 VASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 241
           + +  VL G EW  I GP+ +TLLL+F+SGIPLLE S  KK+G+   YR Y++ T
Sbjct: 181 LIAINVLSGLEWWTIAGPLLMTLLLVFVSGIPLLEASMLKKYGDREDYRAYQRRT 235


This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long. Length = 235

>gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
COG3752272 Steroid 5-alpha reductase family enzyme [General f 100.0
PF06966235 DUF1295: Protein of unknown function (DUF1295); In 100.0
KOG4650311 consensus Predicted steroid reductase [General fun 100.0
PF01222432 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam 99.84
COG2020187 STE14 Putative protein-S-isoprenylcysteine methylt 99.84
KOG1435428 consensus Sterol reductase/lamin B receptor [Lipid 99.77
PF04191106 PEMT: Phospholipid methyltransferase ; InterPro: I 99.66
KOG2628201 consensus Farnesyl cysteine-carboxyl methyltransfe 99.63
PF0414094 ICMT: Isoprenylcysteine carboxyl methyltransferase 99.46
KOG1638257 consensus Steroid reductase [Lipid transport and m 99.44
PLN02392260 probable steroid reductase DET2 99.38
PF02544150 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase 99.29
PLN02560308 enoyl-CoA reductase 99.15
PLN03164323 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 99.07
COG1755172 Uncharacterized protein conserved in bacteria [Fun 98.97
KOG1640304 consensus Predicted steroid reductase [Lipid trans 97.94
KOG1639297 consensus Steroid reductase required for elongatio 97.54
PF07298191 NnrU: NnrU protein; InterPro: IPR009915 This famil 97.07
PLN02797164 phosphatidyl-N-dimethylethanolamine N-methyltransf 90.57
COG4094219 Predicted membrane protein [Function unknown] 86.11
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information
Probab=100.00  E-value=4.8e-61  Score=420.67  Aligned_cols=244  Identities=30%  Similarity=0.589  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccceEEEeccccHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchh
Q 023665            3 VCLQVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRR   82 (279)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~~v~~W~~RL~~~l~~R~~~~geD~R   82 (279)
                      ++..+....+.|++|..+||.+++|..||.+++++++..+..+.+.+.|+.+++.++++||+||+.|+++|.+++|||+|
T Consensus        20 al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~~~geD~R   99 (272)
T COG3752          20 ALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTRGKGEDPR   99 (272)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Confidence            45567778999999999999999999999999999998888877777899999999999999999999999999999999


Q ss_pred             hHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023665           83 FDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP  155 (279)
Q Consensus        83 y~~~r~~~~~-------~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~~~~~~~~G~~l~~~G~~le~~Ad~ql~~f~~~~  155 (279)
                      |.++|+++++       ++.+|.+|+++.+++++|+++++.++ ++++.+.|++|++++++|+.+|..+|.|+..||++|
T Consensus       100 Y~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~~-~~~~~~~d~~g~~iwivg~~fE~lgD~QL~~Fk~~P  178 (272)
T COG3752         100 YVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALNG-PREFGWWDVIGLAIWIVGIVFEALGDAQLWVFKKDP  178 (272)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCh
Confidence            9999998764       56778999999999999999988664 557899999999999999999999999999999999


Q ss_pred             CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHcCCchhH
Q 023665          156 ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIP-LLEESADKKFGNMPAY  234 (279)
Q Consensus       156 ~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~~~~~~i~~~~ll~~~s~i~-~~E~~l~~kyG~~~~Y  234 (279)
                      +|+|+++++|+||+|||||||||.|+|+|+++++.+-.. ..| ++.+|++|+.++.++||+| +||+++++|    |+|
T Consensus       179 ~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~-~~W-~~~sPllmt~LL~~vSGvp~l~ekm~k~r----~~f  252 (272)
T COG3752         179 RNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWL-LLW-AVASPLLMTWLLVHVSGVPPLEEKMLKSR----PGF  252 (272)
T ss_pred             hhccccccccceecccCcchHHHHHHHHHHHHHHHhhhh-Hhh-hcccHHHHHHHHHHhcCCChHHHHHhccc----HhH
Confidence            999999999999999999999999999999999875221 123 5689999999999999999 555444444    899


Q ss_pred             HHHHhhCCcccccCCCcCC
Q 023665          235 RLYKKTTSPLIPLPPVVYG  253 (279)
Q Consensus       235 ~~Y~~~t~~~iP~~~~~~~  253 (279)
                      +|||+||++|+|++|++..
T Consensus       253 r~Yq~rt~~F~P~~~k~~~  271 (272)
T COG3752         253 REYQRRTNAFFPRPPKKAL  271 (272)
T ss_pred             HHHHHHhcccCCCCCcccC
Confidence            9999999999999998754



>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long Back     alignment and domain information
>KOG4650 consensus Predicted steroid reductase [General function prediction only] Back     alignment and domain information
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis Back     alignment and domain information
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2 Back     alignment and domain information
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2 Back     alignment and domain information
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02392 probable steroid reductase DET2 Back     alignment and domain information
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1 Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional Back     alignment and domain information
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins Back     alignment and domain information
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase Back     alignment and domain information
>COG4094 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
4a2n_B194 Isoprenylcysteine carboxyl methyltransferase; memb 4e-06
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Length = 194 Back     alignment and structure
 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 27/198 (13%), Positives = 59/198 (29%), Gaps = 16/198 (8%)

Query: 52  QVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPV 111
           ++    + ++W     ++    + N  + +       +L  L    +             
Sbjct: 7   KICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA----VF 62

Query: 112 TVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQ---KLSFKNSPENRGKWCNVGFWK 168
           +    S       ++ +   I+  + + +     +      S     ++  K    G +K
Sbjct: 63  SSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYK 122

Query: 169 YSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKF 228
             RHP Y           +           ++I G +   +L      +P  EE   ++F
Sbjct: 123 NIRHPMYAHLWLWVITQGIIL-----SNWVVLIFGIVAWAILYFIR--VPKEEELLIEEF 175

Query: 229 GNMPAYRLYKKTTSPLIP 246
           G    Y  Y   T  L P
Sbjct: 176 G--DEYIEYMGKTGRLFP 191


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
4a2n_B194 Isoprenylcysteine carboxyl methyltransferase; memb 99.94
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Back     alignment and structure
Probab=99.94  E-value=1.9e-25  Score=193.26  Aligned_cols=116  Identities=19%  Similarity=0.301  Sum_probs=93.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHH
Q 023665          123 VQAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL  199 (279)
Q Consensus       123 ~~~~~~~G~~l~~~G~~le~~Ad~ql~~-f~~--~~~~~~~lvt~Gly~~sRHPnY~Ge~l~w~G~~l~~~~~~~g~~w~  199 (279)
                      ..+..++|++++++|+.++.+|+.|+.+ |+.  +++++++++|+|+|++||||||+|+++.|+|+++...+      ++
T Consensus        74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~  147 (194)
T 4a2n_B           74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WV  147 (194)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HH
Confidence            3567889999999999999999999865 453  34577899999999999999999999999999987532      33


Q ss_pred             HHH-HHHHHHHHHHHHhCchHHHHHHHHHcCCchhHHHHHhhCCcccccC
Q 023665          200 VIL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP  248 (279)
Q Consensus       200 ~~~-~~i~~~~ll~~~s~i~~~E~~l~~kyG~~~~Y~~Y~~~t~~~iP~~  248 (279)
                      +++ .+++++++  +..+++.||+.+.++||  ++|++|+++||++||++
T Consensus       148 ~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i  193 (194)
T 4a2n_B          148 VLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV  193 (194)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence            333 33332222  23568999999999999  99999999999999985




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00