Citrus Sinensis ID: 023672

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccHHHHHHHHcccccccccEEEEccccccEEEEcccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEcccccEEEccccccEEEEEEccccEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEccccccccEEEEEcccccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEcccccHHccccHHHHHccccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccccccccccccEEEEccccEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccccEcEEEEEEEcccccEEEEccccEEEEEEccccccccEEEEEEEccccccccEEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
MGEEEQQQTLQQQQIYSDTEVTEAAQENQqeytwplirfdvpphrtyhfynqfrtssipnnflkgikwspdgssfltssedktlrifslpengisydvnacslakdqdsyeaslvvtegesvydfcwfphmsasdptscvfasttrdhpihlwdaTTGLLRCTYRAYDAVDEITAAFSvafnptgtkifagynksvrvfdvhrpgrdfekystlkgnkegqagimsaiafspthtgmlaigsysqtsaiYREDNMELLYVLHGQEGGVTHVSKLSSAYT
Flexible Loop (DISEMBL)
mgeeeqqqtLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHgqeggvthvsklssayt
Low Complexity Region (SEG)
MGeeeqqqtlqqqqIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT
Disordered region (IsUnstruct)
******************************EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT***DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN*EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV***********
Disordered Region (DISOPRED)
*********************************WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA**
Disordered Region (DISEMBL)
****************SDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT
Disordered Region (DISPRO)
*******************************YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q60525	538	Telomerase Cajal body pro	N/A	no	0.763	0.395	0.450	2e-51
Q8VC51	532	Telomerase Cajal body pro	yes	no	0.870	0.456	0.417	2e-50
Q9BUR4	548	Telomerase Cajal body pro	yes	no	0.924	0.470	0.401	3e-50
Q5XII5	532	Telomerase Cajal body pro	yes	no	0.763	0.400	0.441	4e-50
Q3SWZ7	540	Telomerase Cajal body pro	yes	no	0.720	0.372	0.431	8e-49
O59762	399	Guanine nucleotide-bindin	yes	no	0.681	0.476	0.276	3e-17
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.623	0.114	0.225	5e-08
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.652	0.108	0.257	2e-07
Q9BQ87	522	F-box-like/WD repeat-cont	no	no	0.494	0.264	0.279	4e-07
Q5RD06	451	POC1 centriolar protein h	no	no	0.691	0.427	0.248	1e-06

>sp|Q60525|WAP53_MESAU Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/222 (45%), Positives = 150/222 (67%), Gaps = 9/222 (4%)

Query: 50  YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
           +++FR  S   NFLKG KW+PDGS  LT+S D TLRI++LP      ++ + +   D   
Sbjct: 149 WSEFRAHS--ENFLKGCKWAPDGSCILTNSADNTLRIYNLPP-----ELYSATEQVDYAE 201

Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
               L + EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA TG LR ++RAY+ 
Sbjct: 202 MVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 261

Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IA
Sbjct: 262 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATFA-KKQGQSGIISCIA 320

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           FSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+
Sbjct: 321 FSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHL 361

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.
Mesocricetus auratus (taxid: 10036)

>sp|Q8VC51|WAP53_MOUSE Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 13/256 (5%)

Query: 20  EVTEAAQENQQEY----TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
           E TE   E + E     T+    F   P      +++F T S   NFLKG KW+PDGS  
Sbjct: 111 EATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRS--ENFLKGCKWAPDGSCI 168

Query: 76  LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
           LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ 
Sbjct: 169 LTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQ 223

Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
           P +   AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++
Sbjct: 224 PDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRT 283

Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
           VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+ 
Sbjct: 284 VRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDG 341

Query: 256 ELLYVLHGQEGGVTHV 271
             L +L G +GG+TH+
Sbjct: 342 SPLALLGGHQGGITHL 357

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Mus musculus (taxid: 10090)

>sp|Q9BUR4|WAP53_HUMAN Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1

 Score =  198 bits (504), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 163/269 (60%), Gaps = 11/269 (4%)

Query: 3   EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNF 62
           EE     L   +   DT   E A E++ +  W    F   P      +++F T   P NF
Sbjct: 116 EEANGPELGSGKAMEDTS-GEPAAEDEGDTAW-NYSFSQLPRFLSGSWSEFSTQ--PENF 171

Query: 63  LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
           LKG KW+PDGS  LT+S D  LRI++LP   + ++      A+        L + EG+++
Sbjct: 172 LKGCKWAPDGSCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTI 226

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
           YD+CW+  MS++ P +   AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+
Sbjct: 227 YDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFS 286

Query: 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
           P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP    + A GS
Sbjct: 287 PDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGS 344

Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           Y ++  +Y  D+   L +L G +GG+TH+
Sbjct: 345 YGRSLGLYAWDDGSPLALLGGHQGGITHL 373

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q5XII5|WAP53_RAT Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1

 Score =  198 bits (503), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/222 (44%), Positives = 148/222 (66%), Gaps = 9/222 (4%)

Query: 50  YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
           +++F T S   NFLKG KW+PDGS  LT+S D  LRI++LP      ++ + S   D   
Sbjct: 145 WSEFSTRS--ENFLKGCKWAPDGSCILTNSADNVLRIYNLPP-----ELYSESEQVDYAE 197

Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
               L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA TG LR ++RAY+ 
Sbjct: 198 MVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 257

Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S +A
Sbjct: 258 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLA 316

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           FSP    + A GSY +T  +Y  D+   L +L G +GG+TH+
Sbjct: 317 FSPAQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHL 357

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|Q3SWZ7|WAP53_BOVIN Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1

 Score =  194 bits (492), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 144/218 (66%), Gaps = 17/218 (7%)

Query: 59  PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS----- 113
           P NFLKG KW+PDGS  LT+S D  LRI++LP            L  + +  E +     
Sbjct: 159 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPV 208

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
           L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA TG LR ++R+Y+ +DE+
Sbjct: 209 LRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDEL 268

Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
           TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT
Sbjct: 269 TAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPT 327

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
              + A GSY ++  +Y  ++   L +L G +GG+TH+
Sbjct: 328 QP-LYACGSYGRSLGLYTWEDGSPLALLGGHQGGITHL 364

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Bos taurus (taxid: 9913)

>sp|O59762|GNR1_SCHPO Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gnr1 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 9/199 (4%)

Query: 59  PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
           P NF    +WSPDGS+ L+ +ED+ L  +++P + +S   +         SY+       
Sbjct: 45  PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----S 100

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
            E+VY + W+  M   DP+S +FA ++RD PI L + TTG  + +Y   D  +    +  
Sbjct: 101 PETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHC 160

Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT 233
           + F   G  + AG    +  F++    ++    +   G K         GI S  + +P 
Sbjct: 161 LQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPM 220

Query: 234 HTGMLAIGSYSQTSAIYRE 252
            +  LA+G+YS    IY +
Sbjct: 221 DSKTLAVGTYSNRVGIYND 239

Negatively regulates the pheromone-response pathway. Acts as a structural mimic of the G protein beta subunit thereby interacting with gpa1 which then inhibits gpa1 signaling.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 39/213 (18%)

Query: 61   NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
            N++  + +SPDG++  + S D+T+R++ +  +   Y      + +   S+  S+V     
Sbjct: 1159 NWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLY------ILQGHTSWVNSVVF---- 1208

Query: 121  SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
                          +P     AS + D  + LW+  +    CT++ +      +   SV 
Sbjct: 1209 --------------NPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH-----TSWVNSVV 1249

Query: 181  FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
            FNP G+ + +G  +K+VR++D+          S      +G    ++++AF+P  + MLA
Sbjct: 1250 FNPDGSMLASGSSDKTVRLWDISS--------SKCLHTFQGHTNWVNSVAFNPDGS-MLA 1300

Query: 240  IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
             GS  QT  ++   + + L+   G    V+ V+
Sbjct: 1301 SGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVT 1333

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 39/221 (17%)

Query: 53   FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112
            FRT +   + +  + +SPDG +  +   DKT++++   +          +L K       
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDG---------TLLK------- 1149

Query: 113  SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE 172
               +T  E   +  +F       P     AS + DH I LWD T+G L  T   + A   
Sbjct: 1150 --TITGHEQTVNNVYF------SPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSA--- 1198

Query: 173  ITAAFSVAFNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
                 +V F+P G  I AG  +K+V+++  HR  +D +   TL G+++     +++++FS
Sbjct: 1199 --GVITVRFSPDGQTIAAGSEDKTVKLW--HR--QDGKLLKTLNGHQD----WVNSLSFS 1248

Query: 232  PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
            P     LA  S  +T  ++R  + +L+  L G    V  V+
Sbjct: 1249 PDGK-TLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVN 1288

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 34/172 (19%)

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           N +  IKW P G    + S+D TL+I+S+ ++   +D+ A S                 +
Sbjct: 360 NEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHS-----------------K 402

Query: 121 SVYDFCWFPHMSA-SDPTSCV-FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
            +Y   W P   A S+P S +  AS + D  + LWD   G+  CT+      + +   +S
Sbjct: 403 EIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGV--CTHTLMKHQEPV---YS 457

Query: 179 VAFNPTGTKIFAG-YNKSVRVFD------VHR---PGRDFEKYSTLKGNKEG 220
           VAF+P G  + +G ++K V +++      VH     G  FE     +G+K G
Sbjct: 458 VAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGGIFEVCWNARGDKVG 509

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 44/237 (18%)

Query: 37  IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY 96
           +R  +P  R    +++F+  + P   ++ + +S DG    T+SEDK+++++S+      Y
Sbjct: 84  VRLWIPDKRGK--FSEFKAHTAP---VRSVDFSADGQFLATASEDKSIKVWSMYRQRFLY 138

Query: 97  DVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT 156
                                   S+Y    +   +   P   +  S + D  I +WD T
Sbjct: 139 ------------------------SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT 174

Query: 157 TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK 215
               +C     D+V     A  V FNP+GT I  AG +++V+V+DV R  +  + Y    
Sbjct: 175 NK--QCVNNFSDSVG---FANFVDFNPSGTCIASAGSDQTVKVWDV-RVNKLLQHYQV-- 226

Query: 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
                 +G ++ I+F P+    L   S   T  I       L+Y L G  G V  VS
Sbjct: 227 -----HSGGVNCISFHPS-DNYLVTASSDGTLKILDLLEGRLIYTLQGHTGPVFTVS 277

Required for ciliogenesis.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
224114069	374	predicted protein [Populus trichocarpa]	0.863	0.644	0.794	1e-117
255569287	422	WD-repeat protein, putative [Ricinus com	0.935	0.618	0.730	1e-117
359495466	407	PREDICTED: telomerase Cajal body protein	0.888	0.609	0.761	1e-116
449457694	417	PREDICTED: telomerase Cajal body protein	0.946	0.633	0.697	1e-112
449488413	417	PREDICTED: telomerase Cajal body protein	0.946	0.633	0.693	1e-112
357475895	427	Telomerase Cajal body protein [Medicago	0.931	0.608	0.678	1e-106
30685465	425	transducin/WD40 domain-containing protei	0.878	0.576	0.709	1e-105
297799914	426	transducin family protein [Arabidopsis l	0.878	0.575	0.705	1e-104
147846785	857	hypothetical protein VITISV_023070 [Viti	0.913	0.297	0.641	1e-103
356521301	447	PREDICTED: telomerase Cajal body protein	0.867	0.541	0.668	2e-96

>gi|224114069|ref|XP_002316658.1| predicted protein [Populus trichocarpa] gi|222859723|gb|EEE97270.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 193/243 (79%), Positives = 221/243 (90%), Gaps = 2/243 (0%)

Query: 29  QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
           QQ+YTWP+IR+++PP RT+HF+ QFRTS  PNNFLKGIKWSPDGS FLTSSED TL  FS
Sbjct: 2   QQDYTWPVIRYNLPPQRTHHFFKQFRTS--PNNFLKGIKWSPDGSCFLTSSEDNTLHSFS 59

Query: 89  LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH 148
           LP+NG   D + C LA D+DSY+ASL+V EGESVYD+CW+P+M+ASDP SCVFA+TTRDH
Sbjct: 60  LPDNGSGSDADGCCLAIDEDSYDASLIVKEGESVYDYCWYPYMTASDPVSCVFATTTRDH 119

Query: 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208
           PIHLWDAT+GLLRCTYRAYDAVDEITAA S+AFNP GTKIFAGYNKS+RVFD+HRPGRDF
Sbjct: 120 PIHLWDATSGLLRCTYRAYDAVDEITAAISIAFNPAGTKIFAGYNKSIRVFDIHRPGRDF 179

Query: 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
            +YST++GNKEGQ GI+SA+AFSPTHTGMLA GSYSQT+AIYREDNMELLYVLHGQEGG+
Sbjct: 180 AQYSTIQGNKEGQTGIISAVAFSPTHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGI 239

Query: 269 THV 271
           THV
Sbjct: 240 THV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569287|ref|XP_002525611.1| WD-repeat protein, putative [Ricinus communis] gi|223535047|gb|EEF36729.1| WD-repeat protein, putative [Ricinus communis]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/271 (73%), Positives = 231/271 (85%), Gaps = 10/271 (3%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           MGEE       Q  I    E TE+ +   Q+ +WP+IRFD+PP RT+HFY QFR+S IPN
Sbjct: 1   MGEE-------QPSIEVAAETTESVE---QDNSWPVIRFDLPPQRTHHFYKQFRSSPIPN 50

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NFLKGIKWSPDGS FLTSSEDKTLR+FSLP+   S D  ACSL  DQDSY++S+VV EGE
Sbjct: 51  NFLKGIKWSPDGSCFLTSSEDKTLRVFSLPDYCSSDDSIACSLDTDQDSYDSSIVVKEGE 110

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           SVYDFCW+P+M+ASDP SCVFASTTRDHPIHLWDA++GLLRCTYRAYDAVDEITAAFS++
Sbjct: 111 SVYDFCWYPYMTASDPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIS 170

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP G K+FAGYNKS+RVFD+HRPGR FE++STL+GNKEGQ GI+S+IAF PTH+GMLA 
Sbjct: 171 FNPAGNKMFAGYNKSIRVFDIHRPGRVFEQHSTLQGNKEGQTGIISSIAFCPTHSGMLAT 230

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           GSYS T+AI+REDNMELLYVLHGQEGG+TH+
Sbjct: 231 GSYSHTTAIFREDNMELLYVLHGQEGGITHI 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495466|ref|XP_002277046.2| PREDICTED: telomerase Cajal body protein 1-like [Vitis vinifera] gi|302144185|emb|CBI23312.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/252 (76%), Positives = 224/252 (88%), Gaps = 4/252 (1%)

Query: 20  EVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS 79
           E+   A++ ++EY+WP+IRFDVPPHR YHF +QFRT S PNNFLKG+KWSPDGS FLTSS
Sbjct: 23  EIGNEAKQVEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNNFLKGVKWSPDGSCFLTSS 82

Query: 80  EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139
           ED TLR+FSLPENG  +  +AC    D+DSY AS+VV+EGES++D CW+P+MSASDP +C
Sbjct: 83  EDNTLRLFSLPENGSDHHESAC----DEDSYAASIVVSEGESIHDHCWYPYMSASDPVTC 138

Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199
           VFASTTRDHPIHLWDA +G LRCTYRAYDAVDEIT AFS+AFNP GTKIFAGYNK +RVF
Sbjct: 139 VFASTTRDHPIHLWDAASGELRCTYRAYDAVDEITTAFSIAFNPAGTKIFAGYNKCLRVF 198

Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
           DVHRPGRDFE+YST+KGNKEGQ+GI++AIAF PTHTGMLA GSYS+T+AIYREDNMELLY
Sbjct: 199 DVHRPGRDFEQYSTIKGNKEGQSGIIAAIAFCPTHTGMLATGSYSRTTAIYREDNMELLY 258

Query: 260 VLHGQEGGVTHV 271
           +LHGQEGGVT+V
Sbjct: 259 ILHGQEGGVTNV 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457694|ref|XP_004146583.1| PREDICTED: telomerase Cajal body protein 1-like [Cucumis sativus]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/271 (69%), Positives = 230/271 (84%), Gaps = 7/271 (2%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           M EE++ ++    +  ++T +     ++QQ Y+WP+I+F+ PP RTYHFYNQFRTS  PN
Sbjct: 9   MEEEDENRSNPTGEATAETTM----NDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPN 64

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NF KG+KWSPDGS FLTSSED +LRIF+LP+ G    VN   +A ++DS+ ++LVV EGE
Sbjct: 65  NFFKGVKWSPDGSCFLTSSEDNSLRIFNLPDYGDDVSVN---VAAEEDSFTSNLVVGEGE 121

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           SVYDFCW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTYRAYDA+DEITAAFS+A
Sbjct: 122 SVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAAFSIA 181

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP GTKIFAGYNK VR+FD+HRPGRDF ++STL+GNKEGQ GI+SAIAFSPTH+GMLA+
Sbjct: 182 FNPAGTKIFAGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLAL 241

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           GSYSQT+ IYREDNMELLYVLHGQEGG+TH+
Sbjct: 242 GSYSQTTGIYREDNMELLYVLHGQEGGITHI 272

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488413|ref|XP_004158026.1| PREDICTED: telomerase Cajal body protein 1-like [Cucumis sativus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/271 (69%), Positives = 230/271 (84%), Gaps = 7/271 (2%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           M EE++ ++    +  ++T +     ++QQ Y+WP+I+F+ PP RTYHFYNQFRTS  PN
Sbjct: 9   MEEEDENRSNPTGEATAETTM----NDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPN 64

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NF KG+KWSPDGS FLTSSED +LRIF+LP+ G    VN   +A ++DS+ ++LVV EGE
Sbjct: 65  NFFKGVKWSPDGSCFLTSSEDNSLRIFNLPDYGDDVSVN---VAAEEDSFTSNLVVGEGE 121

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           SVYDFCW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTYRAYDA+DEITAAFS+A
Sbjct: 122 SVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAAFSIA 181

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP GTKIF+GYNK VR+FD+HRPGRDF ++STL+GNKEGQ GI+SAIAFSPTH+GMLA+
Sbjct: 182 FNPAGTKIFSGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLAL 241

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           GSYSQT+ IYREDNMELLYVLHGQEGG+TH+
Sbjct: 242 GSYSQTTGIYREDNMELLYVLHGQEGGITHI 272

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475895|ref|XP_003608233.1| Telomerase Cajal body protein [Medicago truncatula] gi|355509288|gb|AES90430.1| Telomerase Cajal body protein [Medicago truncatula]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/271 (67%), Positives = 222/271 (81%), Gaps = 11/271 (4%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           MGEE ++    Q       E+        +EY+WP++RFDV PHRTYHF+ QF + + PN
Sbjct: 1   MGEEAEEVIELQPDASIPNEI--------EEYSWPVLRFDVSPHRTYHFHQQFTSPTNPN 52

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NFLK +KWSPDGSSFLTSS+D TLR+F+LP  G   D+     +  QDSY ASLV++EGE
Sbjct: 53  NFLKAVKWSPDGSSFLTSSDDNTLRLFTLP--GADSDI-PLDTSDYQDSYAASLVMSEGE 109

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           S++DFCW+P+MSASDP + VFA+TTRDHPIHLWDAT+G LRCTYRAYDA+DEITAAFSVA
Sbjct: 110 SIHDFCWYPYMSASDPVTNVFATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSVA 169

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP+GTKIFAGYNK +R+FD+HRPGRDF+ +ST+K  KEGQ GI+SA+AFSP+HTGMLA+
Sbjct: 170 FNPSGTKIFAGYNKCIRMFDLHRPGRDFKLHSTVKDKKEGQTGIISALAFSPSHTGMLAL 229

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           GSYSQT+AIY EDNMELLYVLHGQEGGVTHV
Sbjct: 230 GSYSQTTAIYTEDNMELLYVLHGQEGGVTHV 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685465|ref|NP_193883.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|23296375|gb|AAN13056.1| unknown protein [Arabidopsis thaliana] gi|332659062|gb|AEE84462.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 210/248 (84%), Gaps = 3/248 (1%)

Query: 25  AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTL 84
            +  +Q+ +WP +RFDV P+RT+HF  QFRT+  PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 16  VESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTL 75

Query: 85  RIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
            +F LP++G   D N   +   ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA+
Sbjct: 76  SLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFAT 133

Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203
           +TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN S+RVFD+HR
Sbjct: 134 STRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHR 193

Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
           PGRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHG
Sbjct: 194 PGRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHG 253

Query: 264 QEGGVTHV 271
           QEGGVTHV
Sbjct: 254 QEGGVTHV 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799914|ref|XP_002867841.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297313677|gb|EFH44100.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/248 (70%), Positives = 208/248 (83%), Gaps = 3/248 (1%)

Query: 25  AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTL 84
            +  +Q  +WP +RFDV P+RT+HF  QFRT+  PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 16  VESGEQNSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTL 75

Query: 85  RIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
            +F LP++G   D N   +   ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA+
Sbjct: 76  SLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFAT 133

Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203
           +TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN  +RVFD+HR
Sbjct: 134 STRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSFIRVFDLHR 193

Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
           PGRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHG
Sbjct: 194 PGRDFGQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHG 253

Query: 264 QEGGVTHV 271
           QEGGVTHV
Sbjct: 254 QEGGVTHV 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846785|emb|CAN78502.1| hypothetical protein VITISV_023070 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/287 (64%), Positives = 218/287 (75%), Gaps = 32/287 (11%)

Query: 2   GEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNN 61
           GEEEQ     + +     E+   A++ ++EY+WP+IRFDVPPHR YHF +QFRT S PNN
Sbjct: 4   GEEEQPNLGDEAE-----EIGNEAKQVEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNN 58

Query: 62  FLKGIKWSPDGSSFLTSSEDKTLRI-----------------FSLPENGISYDVNACSLA 104
           FLKG+KW      F      + LRI                  S PENG  +  +AC   
Sbjct: 59  FLKGVKWRNVKIGF------RNLRITVAIXCSGKLGMNRNNMMSRPENGSDHXESAC--- 109

Query: 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY 164
            D+DSY AS+VV+EGES++D CW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTY
Sbjct: 110 -DEDSYAASIVVSEGESIHDHCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTY 168

Query: 165 RAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224
           RAYDAVDEIT AFS+AFNP GTKIFAGYNK +RVFDVHRPGRDFE+YST+KGNKEGQ+GI
Sbjct: 169 RAYDAVDEITTAFSIAFNPAGTKIFAGYNKCLRVFDVHRPGRDFEQYSTIKGNKEGQSGI 228

Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           ++AIAF PTHTGMLA GSYS+T+AIYREDNMELLY+LHGQEGGVT+V
Sbjct: 229 IAAIAFCPTHTGMLATGSYSRTTAIYREDNMELLYILHGQEGGVTNV 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521301|ref|XP_003529295.1| PREDICTED: telomerase Cajal body protein 1-like [Glycine max]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/250 (66%), Positives = 202/250 (80%), Gaps = 8/250 (3%)

Query: 30  QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL 89
           +EY++P++RFDV PHRTYHF+ QF T S PNNF K +KWSPDGS FLTSS+D TLR+F+ 
Sbjct: 41  EEYSFPVLRFDVSPHRTYHFHRQFITPSNPNNFFKAVKWSPDGSCFLTSSDDNTLRLFAP 100

Query: 90  PENGISYDVNACSLAKDQ--------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141
           P       V A               DS+ A++V+ EGES++DFCW+P+MS+SD  + VF
Sbjct: 101 PGTESDAPVAASGHGDGNHESSLFVADSFAANVVMHEGESIHDFCWYPYMSSSDLVTNVF 160

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201
           A+TTRDHPIHLWDAT+G LRCTYRAYDA+DEITAAFS+AFNP GTKIFAGYNK +R+FD+
Sbjct: 161 ATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSIAFNPAGTKIFAGYNKCIRLFDL 220

Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261
           HRPGRDFE YST+K  KEGQ GI+SA+AFSP  +GMLA+GSY+QT+AIYREDNMELLY L
Sbjct: 221 HRPGRDFELYSTVKDKKEGQTGIISAMAFSPFPSGMLALGSYNQTTAIYREDNMELLYFL 280

Query: 262 HGQEGGVTHV 271
           HGQEGG+THV
Sbjct: 281 HGQEGGITHV 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2119617	425	AT4G21520 "AT4G21520" [Arabido	0.874	0.574	0.712	3.5e-98
UNIPROTKB|Q60525	538	Wrap53 "Telomerase Cajal body	0.763	0.395	0.450	5.2e-49
MGI|MGI:2384933	532	Wrap53 "WD repeat containing,	0.870	0.456	0.417	1.1e-48
UNIPROTKB|Q9BUR4	548	WRAP53 "Telomerase Cajal body	0.856	0.436	0.413	2.9e-48
RGD|1359624	532	Wrap53 "WD repeat containing,	0.856	0.449	0.413	3.7e-48
UNIPROTKB|F1ST42	539	WRAP53 "Uncharacterized protei	0.856	0.443	0.421	4.7e-48
UNIPROTKB|F1MJW9	540	WRAP53 "Telomerase Cajal body	0.874	0.451	0.406	2.6e-47
UNIPROTKB|Q3SWZ7	540	WRAP53 "Telomerase Cajal body	0.874	0.451	0.406	2.6e-47
FB|FBgn0031782	543	WDR79 "WD repeat domain 79 hom	0.741	0.381	0.331	3.5e-31
ASPGD|ASPL0000048353	430	AN2430 [Emericella nidulans (t	0.745	0.483	0.310	2.3e-21

TAIR|locus:2119617 AT4G21520 "AT4G21520" [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 176/247 (71%), Positives = 210/247 (85%)

Query:    26 QENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLR 85
             +  +Q+ +WP +RFDV P+RT+HF  QFRT+  PNNFLKG+KWSPDGS FL SSED TL 
Sbjct:    17 ESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTLS 76

Query:    86 IFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144
             +F LP++G   D N   +   ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA++
Sbjct:    77 LFHLPQDG--GDSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFATS 134

Query:   145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204
             TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN S+RVFD+HRP
Sbjct:   135 TRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHRP 194

Query:   205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264
             GRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHGQ
Sbjct:   195 GRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHGQ 254

Query:   265 EGGVTHV 271
             EGGVTHV
Sbjct:   255 EGGVTHV 261

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q60525 Wrap53 "Telomerase Cajal body protein 1" [Mesocricetus auratus (taxid:10036)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 100/222 (45%), Positives = 150/222 (67%)

Query:    50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
             +++FR  S   NFLKG KW+PDGS  LT+S D TLRI++LP      ++ + +   D   
Sbjct:   149 WSEFRAHS--ENFLKGCKWAPDGSCILTNSADNTLRIYNLPP-----ELYSATEQVDYAE 201

Query:   110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
                 L + EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA TG LR ++RAY+ 
Sbjct:   202 MVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 261

Query:   170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
             +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IA
Sbjct:   262 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIA 320

Query:   230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
             FSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+
Sbjct:   321 FSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHL 361

GO:0003723 "RNA binding" evidence=ISS

GO:0005697 "telomerase holoenzyme complex" evidence=ISS

GO:0015030 "Cajal body" evidence=ISS

GO:0032203 "telomere formation via telomerase" evidence=ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISS

MGI|MGI:2384933 Wrap53 "WD repeat containing, antisense to TP53" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 107/256 (41%), Positives = 156/256 (60%)

Query:    20 EVTEAAQENQQEY----TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
             E TE   E + E     T+    F   P      +++F T S   NFLKG KW+PDGS  
Sbjct:   111 EATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRS--ENFLKGCKWAPDGSCI 168

Query:    76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
             LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ 
Sbjct:   169 LTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQ 223

Query:   136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
             P +   AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++
Sbjct:   224 PDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRT 283

Query:   196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
             VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+ 
Sbjct:   284 VRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDG 341

Query:   256 ELLYVLHGQEGGVTHV 271
               L +L G +GG+TH+
Sbjct:   342 SPLALLGGHQGGITHL 357

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0032203 "telomere formation via telomerase" evidence=ISO

GO:0051973 "positive regulation of telomerase activity" evidence=ISO

UNIPROTKB|Q9BUR4 WRAP53 "Telomerase Cajal body protein 1" [Homo sapiens (taxid:9606)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 103/249 (41%), Positives = 157/249 (63%)

Query:    23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
             E A E++ +  W    F   P      +++F T   P NFLKG KW+PDGS  LT+S D 
Sbjct:   135 EPAAEDEGDTAWNY-SFSQLPRFLSGSWSEFSTQ--PENFLKGCKWAPDGSCILTNSADN 191

Query:    83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
              LRI++LP   + ++      A+        L + EG+++YD+CW+  MS++ P +   A
Sbjct:   192 ILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVA 246

Query:   143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
             S++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   
Sbjct:   247 SSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTA 306

Query:   203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
             RPGRD E  +T    K+GQ+GI+S IAFSP    + A GSY ++  +Y  D+   L +L 
Sbjct:   307 RPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDDGSPLALLG 364

Query:   263 GQEGGVTHV 271
             G +GG+TH+
Sbjct:   365 GHQGGITHL 373

GO:0005515 "protein binding" evidence=IPI

GO:0051973 "positive regulation of telomerase activity" evidence=IDA

GO:0005697 "telomerase holoenzyme complex" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0032203 "telomere formation via telomerase" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1359624 Wrap53 "WD repeat containing, antisense to TP53" [Rattus norvegicus (taxid:10116)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 103/249 (41%), Positives = 158/249 (63%)

Query:    23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
             E A  ++ +  W      VP + +   +++F T S   NFLKG KW+PDGS  LT+S D 
Sbjct:   119 EPAAVDEGDIFWSYSFSQVPQYLSGS-WSEFSTRS--ENFLKGCKWAPDGSCILTNSADN 175

Query:    83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
              LRI++LP      ++ + S   D       L + EG+++YD+CW+  MS++ P +   A
Sbjct:   176 VLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVA 230

Query:   143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
             S++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   
Sbjct:   231 SSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTS 290

Query:   203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
             RPGRD E  +T    K+GQ+GI+S +AFSP    + A GSY +T  +Y  D+   L +L 
Sbjct:   291 RPGRDCEVRTTF-AKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYAWDDGSPLALLG 348

Query:   263 GQEGGVTHV 271
             G +GG+TH+
Sbjct:   349 GHQGGITHL 357

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005697 "telomerase holoenzyme complex" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0015030 "Cajal body" evidence=ISO;ISS

GO:0032203 "telomere formation via telomerase" evidence=ISO;ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISO;ISS

UNIPROTKB|F1ST42 WRAP53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 105/249 (42%), Positives = 156/249 (62%)

Query:    23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
             E A E++   TW    F   P      +++F T   P NFLKG KW+PDGS  LT+S D 
Sbjct:   126 EPAPEDEGYTTWNY-SFSQLPRFLSGSWSEFSTQ--PENFLKGCKWAPDGSCILTNSADN 182

Query:    83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
              LRI++LP    S +      A+        L + EG+++YD+CW+  MS++ P +   A
Sbjct:   183 VLRIYNLPPELYS-EGEQLEYAE----MAPVLRMMEGDTIYDYCWYSLMSSAQPDTSYVA 237

Query:   143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
             S++R +PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++VRVF   
Sbjct:   238 SSSRQNPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTS 297

Query:   203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
             RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  D+   L +L 
Sbjct:   298 RPGRDCEVRATF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYAWDDGSPLALLG 355

Query:   263 GQEGGVTHV 271
             G +GGVTH+
Sbjct:   356 GHQGGVTHL 364

GO:0051973 "positive regulation of telomerase activity" evidence=IEA

GO:0032203 "telomere formation via telomerase" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1MJW9 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 104/256 (40%), Positives = 158/256 (61%)

Query:    18 DTE-VTEAAQENQQEYT-WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
             D E V+E      + YT W    F   P      +++F T   P NFLKG KW+PDGS  
Sbjct:   119 DVEGVSEELTPEDEGYTIWNY-NFSQVPRFLSGSWSEFITQ--PENFLKGCKWAPDGSCI 175

Query:    76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
             LT+S D  LRI++LP     Y+        +       L + EG+++YD+CW+  MS++ 
Sbjct:   176 LTNSADNILRIYNLPPE--LYNEGE---QLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQ 230

Query:   136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
             P +   AS++R++PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++
Sbjct:   231 PDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRT 290

Query:   196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
             VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  ++ 
Sbjct:   291 VRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDG 348

Query:   256 ELLYVLHGQEGGVTHV 271
               L +L G +GG+TH+
Sbjct:   349 SPLALLGGHQGGITHL 364

GO:0051973 "positive regulation of telomerase activity" evidence=IEA

GO:0032203 "telomere formation via telomerase" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q3SWZ7 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 104/256 (40%), Positives = 158/256 (61%)

Query:    18 DTE-VTEAAQENQQEYT-WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
             D E V+E      + YT W    F   P      +++F T   P NFLKG KW+PDGS  
Sbjct:   119 DVEGVSEELTPEDEGYTIWNY-NFSQVPRFLSGSWSEFITQ--PENFLKGCKWAPDGSCI 175

Query:    76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
             LT+S D  LRI++LP     Y+        +       L + EG+++YD+CW+  MS++ 
Sbjct:   176 LTNSADNILRIYNLPPE--LYNEGE---QLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQ 230

Query:   136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
             P +   AS++R++PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++
Sbjct:   231 PDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRT 290

Query:   196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
             VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  ++ 
Sbjct:   291 VRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDG 348

Query:   256 ELLYVLHGQEGGVTHV 271
               L +L G +GG+TH+
Sbjct:   349 SPLALLGGHQGGITHL 364

GO:0015030 "Cajal body" evidence=ISS

GO:0032203 "telomere formation via telomerase" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0005697 "telomerase holoenzyme complex" evidence=ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0031782 WDR79 "WD repeat domain 79 homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 346 (126.9 bits), Expect = 3.5e-31, P = 3.5e-31
 Identities = 73/220 (33%), Positives = 116/220 (52%)

Query:    55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114
             +S+   ++ KG  WSPDG+  L       + +  +P +   Y  +    A+     ++ +
Sbjct:   177 SSTEAQHYTKGCYWSPDGTCLLVPVHLDGMHVIEMPSD--LYSADTVQPARSLTKLQSEV 234

Query:   115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT 174
              V EG +VYD  W+PHM++  P +C++ +T +  PIH+WDA  G LRC+Y  YDAVDE+ 
Sbjct:   235 HVPEGGTVYDCVWYPHMNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDEVM 294

Query:   175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
             AA S+AF+  G +I+AGY + +++FD  RPGR  + Y             +S IA +  H
Sbjct:   295 AAISLAFSHDGEQIYAGYKRCIKIFDTSRPGRFCDDYPVKFA--------ISCIAQTTAH 346

Query:   235 TGMLAIGS---YSQTSAIYREDNMELLYVLHGQEGGVTHV 271
                L  G+   Y Q   +        L+ L G +GG+T +
Sbjct:   347 PHTLTCGNWHGYIQHFDLRCSHKQGPLFTLGGHKGGITQL 386

GO:0019001 "guanyl nucleotide binding" evidence=ISS

GO:0034512 "box C/D snoRNA binding" evidence=IDA

ASPGD|ASPL0000048353 AN2430 [Emericella nidulans (taxid:162425)]

 Score = 254 (94.5 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 74/238 (31%), Positives = 110/238 (46%)

Query:    54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
             +  S  N F K  +WSPDG++ LT S D  +R + +P      D+    L + Q  ++ S
Sbjct:    49 KLDSASNEFFKSAEWSPDGTTILTDSSDYHIRTYIVPA-----DL----LEERQSPHQLS 99

Query:   114 --LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD 171
                V+  GE  Y   ++P  S  +P+S VF S+ RDHPI L  A    L  TY   + + 
Sbjct:   100 PYSVLASGEPTYASTFYPFYSLQEPSSAVFLSSVRDHPIRLASALAPTLLATYSLVNPMT 159

Query:   172 E-ITAAFSVAFNPT--GTKIFAGYNKSVRVFDVHRPGRDF---------EKYSTLKGNKE 219
             E       + + P   GT    G +  + +FDV RPG +           K   L G   
Sbjct:   160 EAFITPHCILYPPALGGTHFLTGSDSLICLFDVSRPGNEGPVSWMPTIPSKRKQLIGGGV 219

Query:   220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277
             G  GI+SA+A SP   G+LA G++S+   +Y  +         GQ  G  ++SK  +A
Sbjct:   220 GMKGIVSALALSPNEGGILAAGTFSRNIGLYDSNGA-------GQSLGSFNISKTEAA 270

GO:0090029 "negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XI.2128.1	SubName- Full=Putative uncharacterized protein; (374 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_400304	hypothetical protein (446 aa)			•						0.489
	gw1.X.3063.1	hypothetical protein (350 aa)			•						0.483
	gw1.III.285.1	hypothetical protein (500 aa)			•						0.481
	gw1.IX.47.1	hypothetical protein (385 aa)			•						0.479
	estExt_Genewise1_v1.C_LG_XIV0120	hypothetical protein (258 aa)			•						0.479
	eugene3.00140830	hypothetical protein (166 aa)			•						0.478
	gw1.VI.132.1	hypothetical protein (322 aa)			•						0.475
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)			•						0.470
	eugene3.00160385	hypothetical protein (218 aa)			•						0.470
	grail3.0079004601	hypothetical protein (240 aa)			•						0.468

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 39/208 (18%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + +SPDG    T S D T++++ L                +      +L    G  V D 
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDL----------------ETGELLRTLKGHTG-PVRDV 57

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
                           AS + D  I LWD  TG    T   +     +    SVAF+P G
Sbjct: 58  AASAD-------GTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYV---SSVAFSPDG 105

Query: 186 TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
             + +   +K+++V+DV       +  +TL+G+      + S +AFSP  T  +A  S  
Sbjct: 106 RILSSSSRDKTIKVWDV----ETGKCLTTLRGH---TDWVNS-VAFSPDGT-FVASSSQD 156

Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVS 272
            T  ++     + +  L G  G V  V+
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVA 184

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 39/228 (17%)

Query: 52  QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111
             RT       ++ +  S DG+   + S DKT+R++ L                 +    
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL-----------------ETGEC 85

Query: 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD 171
              +      V    + P          + +S++RD  I +WD  TG  +C        D
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGR-------ILSSSSRDKTIKVWDVETG--KCLTTLRGHTD 136

Query: 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230
            +    SVAF+P GT + +   + +++++D+    R  +  +TL G+     G ++++AF
Sbjct: 137 WVN---SVAFSPDGTFVASSSQDGTIKLWDL----RTGKCVATLTGHT----GEVNSVAF 185

Query: 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278
           SP     L   S   T  ++     + L  L G E GV  V+     Y
Sbjct: 186 SPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 38/207 (18%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           +SPDGS   + S D T+R++ L  +       +                    SV    +
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS----------------GHSSSVLSVAF 292

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
                   P   + AS + D  + LWD  TG L  +         ++   S++F+P G+ 
Sbjct: 293 -------SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS---SLSFSPDGSL 342

Query: 188 IFAGY--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
           + +G   + ++R++D+        +        EG + ++S ++FSP    +++ GS   
Sbjct: 343 LVSGGSDDGTIRLWDL--------RTGKPLKTLEGHSNVLS-VSFSP-DGRVVSSGSTDG 392

Query: 246 TSAIYREDNMELLYVLHGQEGGVTHVS 272
           T  ++      LL  L G    VT + 
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLD 419

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 32/240 (13%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPE-------NGISYDVNACSLAK 105
           RT    +  +  + +SPDG    + S  D T++++ L          G +  V++ + + 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 106 DQDSYEASLVVTEGESVYDF------------CWFPHMSASDPTSCVFASTTRDHPIHLW 153
           D     AS        ++D                  +S+  P   + AS + D  I LW
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW 268

Query: 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212
           D  +               +    SVAF+P G  + +G  + +VR++D+           
Sbjct: 269 DLRSS-SSLLRTLSGHSSSVL---SVAFSPDGKLLASGSSDGTVRLWDL--ETGKLLSSL 322

Query: 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
           TLKG++    G +S+++FSP  + +++ GS   T  ++     + L  L G    V  VS
Sbjct: 323 TLKGHE----GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS 377

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 30/148 (20%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
            T +     +  + +SPDG   L+SS D T+++         +D++          +E  
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL---------WDLSTGKCLGTLRGHENG 221

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
           +             F       P   + AS + D  I +WD  TG    T   +      
Sbjct: 222 VN---------SVAF------SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN---- 262

Query: 174 TAAFSVAFNPTGTKIFAGY-NKSVRVFD 200
            +  S+A++P G ++ +G  + ++R++D
Sbjct: 263 -SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
             VAF+P G  +  G  + +++V+D+       E   TLKG+     G +  +A S    
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHT----GPVRDVAASA-DG 63

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
             LA GS  +T  ++  +  E +  L G    V+ V+
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 54/252 (21%)

Query: 55  TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN---------------------- 92
                 + +  I +SPDG   L+ S D T++++ L                         
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 93  ---------GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
                      S D                 +    ESV    + P          + + 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD------GKLLASG 173

Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDV 201
           ++ D  I LWD  TG    T   +          S+AF+P G  + A    + ++R++D+
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDP-----VSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNMELLYV 260
                     STL G+ +         +FSP  + +LA GS   T  ++    +  LL  
Sbjct: 229 STG---KLLRSTLSGHSDS-----VVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 261 LHGQEGGVTHVS 272
           L G    V  V+
Sbjct: 280 LSGHSSSVLSVA 291

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 37/204 (18%)

Query: 48  HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107
              +  RT S  ++ +  + +SPDG    + S D T+R++ L               +  
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL---------------ETG 316

Query: 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
               +  +      V    + P        S + +  + D  I LWD  TG    T   +
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDG------SLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370

Query: 168 DAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226
             V       SV+F+P G  +     + +VR++D+                         
Sbjct: 371 SNV------LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS------- 417

Query: 227 AIAFSPTHTGMLAIGSYSQTSAIY 250
            + FSP     LA GS   T  ++
Sbjct: 418 -LDFSPDG-KSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 17/217 (7%)

Query: 56  SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115
           S+   N  K +K         + +    L + S     +   + + SL    D     L 
Sbjct: 6   STSSENKSKLLK---KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR 62

Query: 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA 175
             E  S+    +        P   +  S + D  I LWD   G      ++ + + + + 
Sbjct: 63  GHED-SITSIAF-------SPDGELLLSGSSDGTIKLWDLDNG--EKLIKSLEGLHDSSV 112

Query: 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           +     +P G  I    +       +       +   TL+G+ E     ++++AFSP   
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE----SVTSLAFSPDGK 168

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
            + +  S   T  ++     + L  L G    V+ ++
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
          RT       +  + +SPDG+   + S+D T+R++ 
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG0646	476	consensus WD40 repeat protein [General function pr	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG2048	691	consensus WD40 repeat protein [General function pr	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.71
KOG2096	420	consensus WD40 repeat protein [General function pr	99.7
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
COG2319	466	FOG: WD40 repeat [General function prediction only	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG4547	541	consensus WD40 repeat-containing protein [General	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
KOG1963	792	consensus WD40 repeat protein [General function pr	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
KOG0649	325	consensus WD40 repeat protein [General function pr	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.47
KOG1310	758	consensus WD40 repeat protein [General function pr	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
KOG1334	559	consensus WD40 repeat protein [General function pr	99.43
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.43
KOG4227	609	consensus WD40 repeat protein [General function pr	99.42
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.42
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.41
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.36
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.32
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
COG4946	668	Uncharacterized protein related to the periplasmic	99.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.27
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.27
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.26
KOG1334	559	consensus WD40 repeat protein [General function pr	99.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.19
KOG2315	566	consensus Predicted translation initiation factor	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.16
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.16
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.14
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.13
KOG4547	541	consensus WD40 repeat-containing protein [General	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.11
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
KOG2315	566	consensus Predicted translation initiation factor	99.04
KOG2695	425	consensus WD40 repeat protein [General function pr	99.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.01
KOG2314	698	consensus Translation initiation factor 3, subunit	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.98
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.97
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.95
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.94
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.92
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.85
COG4946	668	Uncharacterized protein related to the periplasmic	98.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.82
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.82
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.81
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.81
KOG2695	425	consensus WD40 repeat protein [General function pr	98.78
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.76
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.69
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.69
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.65
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.65
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.64
KOG2314	698	consensus Translation initiation factor 3, subunit	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.63
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.56
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.45
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.44
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.4
PRK02888	635	nitrous-oxide reductase; Validated	98.37
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.36
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.35
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.24
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.23
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.22
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.22
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.19
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
KOG2395	644	consensus Protein involved in vacuole import and d	98.18
COG3391	381	Uncharacterized conserved protein [Function unknow	98.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.1
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.97
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.93
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.91
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.87
KOG2395	644	consensus Protein involved in vacuole import and d	97.8
KOG3621	726	consensus WD40 repeat-containing protein [General	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.77
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.75
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.69
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.63
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.56
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.55
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.49
PRK13616	591	lipoprotein LpqB; Provisional	97.48
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.47
PRK02888	635	nitrous-oxide reductase; Validated	97.46
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.43
COG3391	381	Uncharacterized conserved protein [Function unknow	97.36
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.36
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.36
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.35
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.22
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.16
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.13
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	97.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.03
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.98
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.97
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.92
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.92
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.87
PRK13616	591	lipoprotein LpqB; Provisional	96.81
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.68
KOG2444	238	consensus WD40 repeat protein [General function pr	96.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.54
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.5
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.46
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.44
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.41
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.37
COG5167	776	VID27 Protein involved in vacuole import and degra	96.35
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.33
KOG2247	615	consensus WD40 repeat-containing protein [General	96.28
PHA02713	557	hypothetical protein; Provisional	96.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.18
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.88
KOG2444	238	consensus WD40 repeat protein [General function pr	95.68
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.67
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.63
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.56
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.5
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.42
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.42
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.12
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.1
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.0
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.97
PRK13684	334	Ycf48-like protein; Provisional	94.85
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.82
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.65
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.57
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.56
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.47
COG5167	776	VID27 Protein involved in vacuole import and degra	94.42
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.38
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.22
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.0
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.87
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.74
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.73
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.73
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.28
PRK13684	334	Ycf48-like protein; Provisional	93.2
PHA03098	534	kelch-like protein; Provisional	93.17
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.12
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.66
PHA02713	557	hypothetical protein; Provisional	91.91
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.83
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.53
PRK10115	686	protease 2; Provisional	91.45
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.13
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.12
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.93
COG4590	733	ABC-type uncharacterized transport system, permeas	90.86
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.51
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.41
PHA02790	480	Kelch-like protein; Provisional	90.41
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.39
KOG2247	615	consensus WD40 repeat-containing protein [General	90.36
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.15
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.95
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.9
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.71
PRK10115	686	protease 2; Provisional	89.63
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.39
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.27
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.93
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.75
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.43
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.39
PHA03098	534	kelch-like protein; Provisional	86.35
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.71
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	85.32
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.11
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	82.7
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.29
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	82.27
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	81.75
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	81.74
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.86
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.74
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	80.64
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	80.4

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=239.29  Aligned_cols=214  Identities=20%  Similarity=0.314  Sum_probs=179.6

Q ss_pred             eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      ....+++||+.+..+.+      +.++|...|.|++|+|||+.||+|+.||+|++||..+++....              
T Consensus       135 GD~TvR~WD~~TeTp~~------t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--------------  194 (480)
T KOG0271|consen  135 GDTTVRLWDLDTETPLF------TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--------------  194 (480)
T ss_pred             CCceEEeeccCCCCcce------eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--------------
Confidence            33467889998888876      8999999999999999999999999999999999987754321              


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc---------------------
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---------------------  170 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------------  170 (279)
                        ...+|...|++++|.|-  ...|.++.||+++.||.|+|||+..++++..+.+|...                     
T Consensus       195 --~l~gH~K~It~Lawep~--hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  195 --ALRGHKKWITALAWEPL--HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             --cccCcccceeEEeeccc--ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence              33567778999999886  34677778888888888888888776666554444322                     


Q ss_pred             --------------------------------------------------------------------------------
Q 023672          171 --------------------------------------------------------------------------------  170 (279)
Q Consensus       171 --------------------------------------------------------------------------------  170 (279)
                                                                                                      
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl  350 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL  350 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence                                                                                            


Q ss_pred             --------------ccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC
Q 023672          171 --------------DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT  235 (279)
Q Consensus       171 --------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  235 (279)
                                    ++..-|..+.|+||+++++++ .|..|++||.+++    +.+..+    .+|-.+|+.++|+. +.
T Consensus       351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasf----RGHv~~VYqvawsa-Ds  421 (480)
T KOG0271|consen  351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASF----RGHVAAVYQVAWSA-DS  421 (480)
T ss_pred             ecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc----chhhhh----hhccceeEEEEecc-Cc
Confidence                          455568899999999999965 9999999999995    333444    79999999999999 99


Q ss_pred             cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       236 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ++|++|+.|.++++||+++.++...+++|.+.|.++.|+|||+
T Consensus       422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ  464 (480)
T ss_pred             cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence            9999999999999999999999999999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-38  Score=238.08  Aligned_cols=202  Identities=20%  Similarity=0.311  Sum_probs=179.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+|++....++.      .+.+|...|..++|+|+|++|+|++.|.+-++||++++...                 ..
T Consensus       242 tvklw~~~~e~~l~------~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-----------------L~  298 (459)
T KOG0272|consen  242 TVKLWKLSQETPLQ------DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-----------------LL  298 (459)
T ss_pred             ceeeeccCCCcchh------hhhcchhhheeeeecCCCceeeecccccchhhcccccchhh-----------------Hh
Confidence            45566666554444      78999999999999999999999999999999999976431                 14


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ..+|...|.+++|       .+||.++++|+.|..-+|||+++|+++..+..|..     +|.+++|+|+|..+++| .|
T Consensus       299 QEGHs~~v~~iaf-------~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-----~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  299 QEGHSKGVFSIAF-------QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-----EILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             hcccccccceeEe-------cCCCceeeccCccchhheeecccCcEEEEeccccc-----ceeeEeECCCceEEeecCCC
Confidence            5678889999987       77899999999999999999999999999999887     99999999999999977 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      ++++|||++..    ....++    .+|.+-|+.++|+|..|.+|+|++.|++++||..+++.++.++.+|++.|.++..
T Consensus       367 nt~kVWDLR~r----~~ly~i----pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di  438 (459)
T KOG0272|consen  367 NTCKVWDLRMR----SELYTI----PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI  438 (459)
T ss_pred             CcEEEeeeccc----ccceec----ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe
Confidence            99999999974    223444    7999999999999988999999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      +|||++
T Consensus       439 s~d~~~  444 (459)
T KOG0272|consen  439 SPDSQA  444 (459)
T ss_pred             ccCCce
Confidence            999964

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-37  Score=232.55  Aligned_cols=200  Identities=21%  Similarity=0.274  Sum_probs=174.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC--CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+|+.+......      ++.||.+.|.++.|+|.  +..+|||+.||++++|++++.....                
T Consensus       198 ~~kvW~~~~~~~~~------~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~----------------  255 (459)
T KOG0272|consen  198 LVKVWSVPQCNLLQ------TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ----------------  255 (459)
T ss_pred             ceeEeecCCcceeE------EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh----------------
Confidence            45677777765554      89999999999999996  5689999999999999998643221                


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                       -..+|...|..++|       +|+|++|++++.|.+-++||++++..+....+|..     .|.+++|+|||.++++| 
T Consensus       256 -~l~gH~~RVs~Vaf-------HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-----~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  256 -DLEGHLARVSRVAF-------HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK-----GVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             -hhhcchhhheeeee-------cCCCceeeecccccchhhcccccchhhHhhccccc-----ccceeEecCCCceeeccC
Confidence             23456678888877       77899999999999999999999998887788876     99999999999999976 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  271 (279)
                      .|..-+|||++++    .++..+    .+|..+|.+++|+| +|..|+||+.|++++|||++..++++++++|.+-|+.+
T Consensus       323 lD~~~RvWDlRtg----r~im~L----~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  323 LDSLGRVWDLRTG----RCIMFL----AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV  393 (459)
T ss_pred             ccchhheeecccC----cEEEEe----cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence            9999999999996    555556    78999999999999 99999999999999999999999999999999999999


Q ss_pred             EEcc-CCC
Q 023672          272 SKLS-SAY  278 (279)
Q Consensus       272 ~~sp-dg~  278 (279)
                      .|+| .|+
T Consensus       394 k~~p~~g~  401 (459)
T KOG0272|consen  394 KYSPQEGY  401 (459)
T ss_pred             EecccCCe
Confidence            9999 444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=204.37  Aligned_cols=210  Identities=20%  Similarity=0.308  Sum_probs=169.2

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      ..+...+.+|++..... ..-...+.+.||...|..+..++||++.++++.|+++++||+.+++..              
T Consensus        34 asrDk~ii~W~L~~dd~-~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--------------   98 (315)
T KOG0279|consen   34 ASRDKTIIVWKLTSDDI-KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--------------   98 (315)
T ss_pred             cccceEEEEEEeccCcc-ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--------------
Confidence            44555667777655422 122234478999999999999999999999999999999999976432              


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC--CCE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTK  187 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~  187 (279)
                         ....+|...|.++++       ++|.+.+++|+.|.+|++||+... +..++.....   ...|.|+.|+|+  ..+
T Consensus        99 ---~~f~GH~~dVlsva~-------s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~---~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   99 ---RRFVGHTKDVLSVAF-------STDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSH---REWVSCVRFSPNESNPI  164 (315)
T ss_pred             ---EEEEecCCceEEEEe-------cCCCceeecCCCcceeeeeeeccc-EEEEEecCCC---cCcEEEEEEcCCCCCcE
Confidence               245678889999876       788999999999999999998754 4444443321   128999999998  456


Q ss_pred             EEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672          188 IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (279)
Q Consensus       188 l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  266 (279)
                      |++ |.|++|++||+++        ..+...+.+|.+.++.+++|| +|.++++|+.||.+.+||++.++.++.+. |..
T Consensus       165 Ivs~s~DktvKvWnl~~--------~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~-a~~  234 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRN--------CQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFD  234 (315)
T ss_pred             EEEccCCceEEEEccCC--------cchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc-CCC
Confidence            664 5999999999997        234444479999999999999 99999999999999999999999999888 778


Q ss_pred             CEEEEEEccCCC
Q 023672          267 GVTHVSKLSSAY  278 (279)
Q Consensus       267 ~v~~~~~spdg~  278 (279)
                      .|.+++|+|+..
T Consensus       235 ~v~sl~fspnry  246 (315)
T KOG0279|consen  235 IVNSLCFSPNRY  246 (315)
T ss_pred             eEeeEEecCCce
Confidence            999999999853

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-35  Score=235.71  Aligned_cols=187  Identities=25%  Similarity=0.361  Sum_probs=168.8

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      +++.||.++|..+.|+|+.++|+++|.|++|++|.+.+....                 +...+|..+|+++.|      
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~-----------------V~y~GH~~PVwdV~F------  501 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL-----------------VIYKGHLAPVWDVQF------  501 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-----------------EEecCCCcceeeEEe------
Confidence            368899999999999999999999999999999999975331                 244577889999987      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                       +|.|-++|+++.|++-++|......+++.+.+|-.     .|.|+.|+|++.++++| .|.+|++||+.++    ....
T Consensus       502 -~P~GyYFatas~D~tArLWs~d~~~PlRifaghls-----DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G----~~VR  571 (707)
T KOG0263|consen  502 -APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-----DVDCVSFHPNSNYVATGSSDRTVRLWDVSTG----NSVR  571 (707)
T ss_pred             -cCCceEEEecCCCceeeeeecccCCchhhhccccc-----ccceEEECCcccccccCCCCceEEEEEcCCC----cEEE
Confidence             66799999999999999999999999999988876     89999999999999987 9999999999985    2233


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+    .||.++|.+++||| +|.+|++|++||.|.+||+.+++++..+.+|.+.|.+|.||.||.
T Consensus       572 iF----~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  572 IF----TGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN  632 (707)
T ss_pred             Ee----cCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence            33    79999999999999 999999999999999999999999999999999999999999984

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.3e-34  Score=210.97  Aligned_cols=189  Identities=22%  Similarity=0.330  Sum_probs=161.8

Q ss_pred             eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672           49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (279)
Q Consensus        49 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (279)
                      ..++...+.||.++|.|++|+|+|+.|++|+.|.++++||+.+....                 ....+|.+.|.+++| 
T Consensus       104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------~t~KgH~~WVlcvaw-  165 (480)
T KOG0271|consen  104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------FTCKGHKNWVLCVAW-  165 (480)
T ss_pred             cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------eeecCCccEEEEEEE-
Confidence            44566689999999999999999999999999999999999864221                 134567789999988 


Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeee-EEEeccCccccccceeeEEECC-----CCCEEEEe-cCCeEEEEEc
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-----TGTKIFAG-YNKSVRVFDV  201 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~-~d~~i~~~d~  201 (279)
                            +|||..||+|+.||+|++||..+|+++ ..+..|..     .|++++|.|     ..++++++ .||.++|||+
T Consensus       166 ------sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  166 ------SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             ------CCCcchhhccccCCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence                  789999999999999999999998654 56777776     999999987     45778855 9999999999


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ..+    .+...+    .+|+.+|+|++|--  ..+|++|+.|++|++|+...|.+...+++|..+|+.|+.|.|
T Consensus       235 ~~~----~~~~~l----sgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd  299 (480)
T KOG0271|consen  235 KLG----TCVRTL----SGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD  299 (480)
T ss_pred             cCc----eEEEEe----ccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence            874    344444    79999999999965  459999999999999999999999999999999999998843

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-33  Score=200.46  Aligned_cols=202  Identities=15%  Similarity=0.225  Sum_probs=164.3

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      -.+++||+.+++..+      .+.||...|.+++|++|.+.+++|+.|.+|++|+.-.....                 .
T Consensus        85 ~~lrlWDl~~g~~t~------~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-----------------t  141 (315)
T KOG0279|consen   85 GTLRLWDLATGESTR------RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-----------------T  141 (315)
T ss_pred             ceEEEEEecCCcEEE------EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-----------------E
Confidence            367899999987765      78899999999999999999999999999999998754221                 0


Q ss_pred             eee-cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          114 LVV-TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       114 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                      +.. .+.+.|.+++|+|+     ++..+|++++.|++|++||+++.+....+.+|..     .++.++++|||.++++| 
T Consensus       142 ~~~~~~~~WVscvrfsP~-----~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-----~v~t~~vSpDGslcasGg  211 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPN-----ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-----YVNTVTVSPDGSLCASGG  211 (315)
T ss_pred             EecCCCcCcEEEEEEcCC-----CCCcEEEEccCCceEEEEccCCcchhhccccccc-----cEEEEEECCCCCEEecCC
Confidence            111 12578999999774     3467999999999999999999998888888776     89999999999999976 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee----c---
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----Q---  264 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~---  264 (279)
                      .||.+.+||++.+    +.+..+     +|...|.+++|+| +..+|+.+. +..|+|||+.++.++..+..    .   
T Consensus       212 kdg~~~LwdL~~~----k~lysl-----~a~~~v~sl~fsp-nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~  280 (315)
T KOG0279|consen  212 KDGEAMLWDLNEG----KNLYSL-----EAFDIVNSLCFSP-NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSK  280 (315)
T ss_pred             CCceEEEEEccCC----ceeEec-----cCCCeEeeEEecC-CceeEeecc-CCceEEEeccchhhhhhccccccccccc
Confidence            9999999999984    223333     6778999999999 887777665 45599999999988766542    1   


Q ss_pred             --CCCEEEEEEccCCCC
Q 023672          265 --EGGVTHVSKLSSAYT  279 (279)
Q Consensus       265 --~~~v~~~~~spdg~~  279 (279)
                        .....+++||+||++
T Consensus       281 ~~~~~clslaws~dG~t  297 (315)
T KOG0279|consen  281 AGDPICLSLAWSADGQT  297 (315)
T ss_pred             cCCcEEEEEEEcCCCcE
Confidence              224578999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=191.59  Aligned_cols=209  Identities=18%  Similarity=0.205  Sum_probs=170.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+...-    +..++.+|+..|+++.|..+|++++||++||+++|||++.....                  .
T Consensus        62 hvRlyD~~S~np~----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q------------------R  119 (311)
T KOG0315|consen   62 HVRLYDLNSNNPN----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ------------------R  119 (311)
T ss_pred             eeEEEEccCCCCC----ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc------------------h
Confidence            5778888877652    33478899999999999999999999999999999999963321                  2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+..+|+++..       +|+...|++|..+|.|++||+....+...+.....    .+|.++...|+|..+++. ..
T Consensus       120 ~~~~~spVn~vvl-------hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~----~~i~sl~v~~dgsml~a~nnk  188 (311)
T KOG0315|consen  120 NYQHNSPVNTVVL-------HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD----TSIQSLTVMPDGSMLAAANNK  188 (311)
T ss_pred             hccCCCCcceEEe-------cCCcceEEeecCCCcEEEEEccCCccccccCCCCC----cceeeEEEcCCCcEEEEecCC
Confidence            2344578888876       66777899999999999999998766555543332    289999999999999977 88


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVS  272 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~  272 (279)
                      |..++|++-. ......+ ....++..|.+.+..+.+|| ++.+|++++.|.+++||+..+. +....+.+|..++++.+
T Consensus       189 G~cyvW~l~~-~~~~s~l-~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~  265 (311)
T KOG0315|consen  189 GNCYVWRLLN-HQTASEL-EPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA  265 (311)
T ss_pred             ccEEEEEccC-CCccccc-eEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence            9999999976 2222222 12233479999999999999 9999999999999999999988 66678899999999999


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      ||.||+|
T Consensus       266 FS~dg~Y  272 (311)
T KOG0315|consen  266 FSADGEY  272 (311)
T ss_pred             eccCccE
Confidence            9999987

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-31  Score=191.48  Aligned_cols=191  Identities=13%  Similarity=0.209  Sum_probs=162.3

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      +..++++||.+.|.++.|++|.++|+++|.||.+.|||.-+.....                 ........|..++|   
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h-----------------aipl~s~WVMtCA~---  105 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH-----------------AIPLPSSWVMTCAY---  105 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-----------------EEecCceeEEEEEE---
Confidence            3446899999999999999999999999999999999987653321                 12223346777766   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCC------eeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCC
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTG------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP  204 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~  204 (279)
                          +|.|+++|+|+.|+...||++.+.      +..+.+..|..     .+.|+.|-+|+.+|.++.|.+..+||++++
T Consensus       106 ----sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-----ylScC~f~dD~~ilT~SGD~TCalWDie~g  176 (343)
T KOG0286|consen  106 ----SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-----YLSCCRFLDDNHILTGSGDMTCALWDIETG  176 (343)
T ss_pred             ----CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc-----eeEEEEEcCCCceEecCCCceEEEEEcccc
Confidence                889999999999999999999865      34455667765     889999999887777779999999999995


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                          +....+    .+|.+.|.++.++|.+++.+++|+-|+..+|||+|.+.+.++|.+|++.|+++.|.|+|.
T Consensus       177 ----~~~~~f----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~  242 (343)
T KOG0286|consen  177 ----QQTQVF----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD  242 (343)
T ss_pred             ----eEEEEe----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC
Confidence                444444    799999999999998889999999999999999999999999999999999999999984

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=192.12  Aligned_cols=205  Identities=20%  Similarity=0.280  Sum_probs=171.7

Q ss_pred             EecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec
Q 023672           38 RFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT  117 (279)
Q Consensus        38 ~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (279)
                      +|++.+...-......+.+.+|++.+.|+.|.+|+ .|+|+|.|.+..+||+++++...                 ...+
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~-----------------~f~G  184 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQ-----------------VFHG  184 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEE-----------------EecC
Confidence            45554442222233445799999999999999865 68899999999999999876532                 3446


Q ss_pred             CCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeE
Q 023672          118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV  196 (279)
Q Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i  196 (279)
                      |.+.|.++...|.      +++.+++|+-|+..++||++.+.+++.|..|..     .|.++.|.|+|.-+++| .|++.
T Consensus       185 H~gDV~slsl~p~------~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~tc  253 (343)
T KOG0286|consen  185 HTGDVMSLSLSPS------DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDATC  253 (343)
T ss_pred             CcccEEEEecCCC------CCCeEEecccccceeeeeccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCcee
Confidence            7788998877442      888999999999999999999999999999987     99999999999999987 99999


Q ss_pred             EEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       197 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ++||+|. .+.+..+..     .....+|++++||. .|++|++|..|.++.+||.-.++.+..|.+|+..|.++..+||
T Consensus       254 RlyDlRa-D~~~a~ys~-----~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  254 RLYDLRA-DQELAVYSH-----DSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             EEEeecC-CcEEeeecc-----CcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence            9999998 443333321     34456899999999 9999999999999999999999999999999999999999999


Q ss_pred             CC
Q 023672          277 AY  278 (279)
Q Consensus       277 g~  278 (279)
                      |-
T Consensus       327 G~  328 (343)
T KOG0286|consen  327 GM  328 (343)
T ss_pred             Cc
Confidence            84

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-32  Score=199.41  Aligned_cols=191  Identities=16%  Similarity=0.279  Sum_probs=165.2

Q ss_pred             eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672           49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (279)
Q Consensus        49 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (279)
                      .+...+.+.+|.+.|.|+++.|..++|++|+.|++++|||+.++++.-                 ...+|-..|..+++ 
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----------------tltGhi~~vr~vav-  201 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----------------TLTGHIETVRGVAV-  201 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----------------eecchhheeeeeee-
Confidence            455667899999999999999999999999999999999999886532                 22345567777766 


Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCc
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~  207 (279)
                            |+-..++++++.|+.|+.||++..+.++.+.+|-.     .|+|++.+|.-..|++| .|..++|||+++.   
T Consensus       202 ------S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-----~V~~L~lhPTldvl~t~grDst~RvWDiRtr---  267 (460)
T KOG0285|consen  202 ------SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-----GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR---  267 (460)
T ss_pred             ------cccCceEEEecCCCeeEEEechhhhhHHHhccccc-----eeEEEeccccceeEEecCCcceEEEeeeccc---
Confidence                  55566999999999999999999999998888776     99999999999999865 9999999999983   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                       ..+..+    .+|..+|.++.+.| -...+++|+.|++|++||++.|+...++..|...|++++.+|.-
T Consensus       268 -~~V~~l----~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e  331 (460)
T KOG0285|consen  268 -ASVHVL----SGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE  331 (460)
T ss_pred             -ceEEEe----cCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence             223334    79999999999999 55678999999999999999999999999999999999999863

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=197.59  Aligned_cols=205  Identities=20%  Similarity=0.244  Sum_probs=175.5

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      ...+++||..++++..      .+.||++.|..++|+..|++|++++.|-.+++||..+...      +          .
T Consensus       129 d~tikv~D~~tg~~e~------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~------c----------~  186 (406)
T KOG0295|consen  129 DATIKVFDTETGELER------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR------C----------I  186 (406)
T ss_pred             CceEEEEEccchhhhh------hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH------H----------H
Confidence            3356788988888855      8999999999999999999999999999999999985211      0          0


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                      ....+|...|.++.|.|       .|.+|++++.|.+|+.|++.++-++.++..|..     .|..+..+.||.+++++ 
T Consensus       187 ks~~gh~h~vS~V~f~P-------~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-----wvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  187 KSLIGHEHGVSSVFFLP-------LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-----WVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             HHhcCcccceeeEEEEe-------cCCeeeecccccceeEEecccceeEEeccCchH-----hEEEEEecCCeeEEEecC
Confidence            13345667788887754       578999999999999999999999999999987     99999999999999966 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC--------------CCcEEEEEeCCCcEEEEecCCCeE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--------------HTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                      .|.++++|-+.+.    .+...+    ..|..+|-+++|-|.              .++++++++.|++|++||+.++.+
T Consensus       255 ~dqtl~vW~~~t~----~~k~~l----R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  255 NDQTLRVWVVATK----QCKAEL----REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             CCceEEEEEeccc----hhhhhh----hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence            9999999999873    222233    688889999999873              346999999999999999999999


Q ss_pred             EEEEeecCCCEEEEEEccCCCC
Q 023672          258 LYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       258 ~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +.++.+|..+|.+++|+|.|||
T Consensus       327 L~tL~ghdnwVr~~af~p~Gky  348 (406)
T KOG0295|consen  327 LFTLVGHDNWVRGVAFSPGGKY  348 (406)
T ss_pred             EEEEecccceeeeeEEcCCCeE
Confidence            9999999999999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.2e-30  Score=181.69  Aligned_cols=195  Identities=22%  Similarity=0.367  Sum_probs=167.5

Q ss_pred             eeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           53 FRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .+.+.+|.+.|..++|+|- |..||+|+.|..|+||+...+..    -.+         ...+...|...|.+++|    
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~c---------k~vld~~hkrsVRsvAw----   69 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTC---------KTVLDDGHKRSVRSVAW----   69 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----EEE---------EEeccccchheeeeeee----
Confidence            4478999999999999997 88999999999999999984211    001         11244567889999988    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCce
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~  208 (279)
                         +|.|++|++++.|.++.||.-..+  +++.++.+|..     .|.+++|+++|++||+ +.|..|.+|.+.. +..+
T Consensus        70 ---sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEf  140 (312)
T KOG0645|consen   70 ---SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEF  140 (312)
T ss_pred             ---cCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcE
Confidence               778999999999999999987655  67788888887     9999999999999995 5999999999985 6778


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC---CCeEEEEEeecCCCEEEEEEccCCC
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+...+    ..|...|..+.|+| ...+|++++.|++|++|+-.   ..++..++.+|...|++++|+|.|.
T Consensus       141 ec~aVL----~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~  208 (312)
T KOG0645|consen  141 ECIAVL----QEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS  208 (312)
T ss_pred             EEEeee----ccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence            887777    79999999999999 88999999999999999876   4578999999999999999999883

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=2e-32  Score=204.37  Aligned_cols=184  Identities=20%  Similarity=0.355  Sum_probs=163.5

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.++|++|.|++++.++++|+.+|.|++|+.+-..                 +..+..++...|.+++|       
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-----------------Vk~~~ahh~eaIRdlaf-------  188 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-----------------VKIIQAHHAEAIRDLAF-------  188 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-----------------hHHhhHhhhhhhheecc-------
Confidence            678999999999999999999999999999999986321                 11244566688999876       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +|+...+++|+.||+|+|||....+....+.+|+-     .|.+++|+|.-.+++++ .|..|++||.+++    .++.+
T Consensus       189 SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw-----dVksvdWHP~kgLiasgskDnlVKlWDprSg----~cl~t  259 (464)
T KOG0284|consen  189 SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW-----DVKSVDWHPTKGLIASGSKDNLVKLWDPRSG----SCLAT  259 (464)
T ss_pred             CCCCceeEEecCCCeEEEEeccCCchhheeccCCC-----CcceeccCCccceeEEccCCceeEeecCCCc----chhhh
Confidence            77788999999999999999999988888888886     89999999998888866 8999999999995    55555


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      +    .+|+..|..+.|+| ++.+|+++|.|..++++|+++.+.+.++++|...|++++|+|-
T Consensus       260 l----h~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  260 L----HGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL  317 (464)
T ss_pred             h----hhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence            5    79999999999999 8899999999999999999999999999999999999999983

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=5.7e-31  Score=211.26  Aligned_cols=199  Identities=18%  Similarity=0.303  Sum_probs=168.1

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc-----c---------cccccCCCCcccceeeecCCCceEEE
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-----N---------ACSLAKDQDSYEASLVVTEGESVYDF  125 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~v~~~  125 (279)
                      ...++|..|++|++.||.|-.|..|++|.+...++....     .         .................+|.++|+.+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            356999999999999999999999999999854321100     0         01112223334445577899999999


Q ss_pred             EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       126 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      .|       +|+.++|++|+.|+++++|.+.+..++..+++|..     +|+.+.|+|.|.+++++ .|++.++|.....
T Consensus       458 sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-----PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  458 SF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-----PVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             ee-------cccccceeeccCCcceeeeecccceeEEEecCCCc-----ceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            87       77899999999999999999999999999998887     99999999999999965 9999999999872


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       .+   ...+    .+|-+.|.|+.|+| +..++++||.|.++++||+.+|..+..|.+|.++|.+++|||+|+|
T Consensus       526 -~P---lRif----aghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  526 -KP---LRIF----AGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             -Cc---hhhh----cccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence             22   2223    79999999999999 9999999999999999999999999999999999999999999987

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=3.4e-30  Score=185.45  Aligned_cols=188  Identities=16%  Similarity=0.243  Sum_probs=159.6

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..+.+|++.|..+.|+|+|.+||+|+.|..|.+|+......                .......|.++|..+.|      
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------N~~~lkgHsgAVM~l~~------   98 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------NFWVLKGHSGAVMELHG------   98 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------ceeeeccccceeEeeee------
Confidence            36889999999999999999999999999999999763211                11133478889999988      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                       .++++.|++++.|.+|+.||+++|+..+.++.|..     .|..+.-+..|..++ ++ .|++++|||+|+.    ...
T Consensus        99 -~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----~~~  168 (338)
T KOG0265|consen   99 -MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----EAI  168 (338)
T ss_pred             -ccCCCEEEEecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEecCCCceEEEEeeccc----chh
Confidence             77899999999999999999999999999999886     788887666677777 55 8999999999972    222


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .++     .....++++.|.. .+..+.+|+-|+.|++||++.+..++++.+|.++|++|..+|+|.+
T Consensus       169 ~t~-----~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~  230 (338)
T KOG0265|consen  169 KTF-----ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF  230 (338)
T ss_pred             hcc-----ccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence            222     2355799999998 8889999999999999999999999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1e-29  Score=193.13  Aligned_cols=187  Identities=21%  Similarity=0.332  Sum_probs=155.2

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      +..|++++|+.+|..||+|+.||.++||+......                  .....|.++|.++.|       +..|.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKW-------nk~G~  289 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKW-------NKKGT  289 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEE-------cCCCC
Confidence            35799999999999999999999999999875422                  134457789999999       67889


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCcc------------------------------------ccccceeeEEECC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------------------DEITAAFSVAFNP  183 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------------~~~~~v~~~~~~~  183 (279)
                      +|++++.|+++.+||..++.....+..+...                                    +|...|.++.|+|
T Consensus       290 yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~  369 (524)
T KOG0273|consen  290 YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP  369 (524)
T ss_pred             EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence            9999999999999999877655554333221                                    4556899999999


Q ss_pred             CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC--------CCcEEEEEeCCCcEEEEecCC
Q 023672          184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--------HTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       184 ~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      .+.+|+++ .|++++||.+...    .....+    .+|...|+.+.|+|+        .+..|++++.|++|++||+..
T Consensus       370 tg~LLaS~SdD~TlkiWs~~~~----~~~~~l----~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  370 TGSLLASCSDDGTLKIWSMGQS----NSVHDL----QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES  441 (524)
T ss_pred             CCceEEEecCCCeeEeeecCCC----cchhhh----hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence            99999965 9999999998763    222223    788889999999984        344799999999999999999


Q ss_pred             CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          255 MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +.++.+|..|..+|.+++|||+|+|
T Consensus       442 gv~i~~f~kH~~pVysvafS~~g~y  466 (524)
T KOG0273|consen  442 GVPIHTLMKHQEPVYSVAFSPNGRY  466 (524)
T ss_pred             CceeEeeccCCCceEEEEecCCCcE
Confidence            9999999999999999999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.7e-29  Score=191.95  Aligned_cols=214  Identities=19%  Similarity=0.309  Sum_probs=170.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc-----------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL-----------  103 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-----------  103 (279)
                      .+++|+.......       ++..|+++|.++.|+.+|++|++++.|+++.+||..++...+.......           
T Consensus       258 ~~riw~~~G~l~~-------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~  330 (524)
T KOG0273|consen  258 EARIWNKDGNLIS-------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND  330 (524)
T ss_pred             EEEEEecCchhhh-------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence            4566666554443       6888999999999999999999999999999999977754222111100           


Q ss_pred             ---cC-----------CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc
Q 023672          104 ---AK-----------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA  169 (279)
Q Consensus       104 ---~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~  169 (279)
                         ..           ..+.++.. ..+|.++|..+.|       +|.+.+|++++.|++++||..........+..|..
T Consensus       331 ~F~ts~td~~i~V~kv~~~~P~~t-~~GH~g~V~alk~-------n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk  402 (524)
T KOG0273|consen  331 EFATSSTDGCIHVCKVGEDRPVKT-FIGHHGEVNALKW-------NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK  402 (524)
T ss_pred             eEeecCCCceEEEEEecCCCccee-eecccCceEEEEE-------CCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc
Confidence               00           12222222 3347778888888       66799999999999999999998888888888886


Q ss_pred             cccccceeeEEECCCC---------CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEE
Q 023672          170 VDEITAAFSVAFNPTG---------TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA  239 (279)
Q Consensus       170 ~~~~~~v~~~~~~~~~---------~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~  239 (279)
                           .|+.+.|+|.|         ..++ ++.|++|++||+..+    .++..+    ..|..+|++++|+| ++.+++
T Consensus       403 -----ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f----~kH~~pVysvafS~-~g~ylA  468 (524)
T KOG0273|consen  403 -----EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----VPIHTL----MKHQEPVYSVAFSP-NGRYLA  468 (524)
T ss_pred             -----ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----ceeEee----ccCCCceEEEEecC-CCcEEE
Confidence                 89999999965         2455 559999999999985    444454    68999999999999 999999


Q ss_pred             EEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       240 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+|.
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGD  506 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCC
Confidence            999999999999999999988885 56799999998874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.1e-29  Score=201.63  Aligned_cols=186  Identities=21%  Similarity=0.288  Sum_probs=157.3

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ..+||...+++++++|||+++|||+.||.|+|||...+-+                 ......|...|+.+.|       
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC-----------------~vTFteHts~Vt~v~f-------  400 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC-----------------FVTFTEHTSGVTAVQF-------  400 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE-----------------EEEeccCCCceEEEEE-------
Confidence            6789999999999999999999999999999999986533                 2245667789999988       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-CeEEEEEccCCCCceeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-KSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-~~i~~~d~~~~~~~~~~~~  212 (279)
                      +..++.+++++.||+|+.||+...+..+++..+..    ....|++..|.|.++.+| .| -.|.+|++.++    +.+-
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p----~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG----qllD  472 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG----QLLD  472 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCCCc----eeeeEEEEcCCCCEEEeeccceEEEEEEEeecC----eeee
Confidence            66899999999999999999999888888877654    267789999999999877 44 57999999995    3333


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+    .||.++|.+++|+| .+..|++|+.|.+|++||+-.. ..+.++. +...+.+++|+|||+
T Consensus       473 iL----sGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  473 IL----SGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK  533 (893)
T ss_pred             hh----cCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC
Confidence            33    89999999999999 8999999999999999998654 3455666 567799999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.5e-29  Score=202.10  Aligned_cols=189  Identities=22%  Similarity=0.363  Sum_probs=155.9

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|...|.+++|+|+++++++++.|++|+|||+.....                .......|...|++++|       
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~----------------~~~~l~gH~~~v~~~~f-------  254 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR----------------NLKTLKGHSTYVTSVAF-------  254 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe----------------EEEEecCCCCceEEEEe-------
Confidence            5689999999999999999999999999999999943211                11134478889999977       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +|+++.+++|+.|++|++||++++++...+..|..     .|.+++|++++++|+++ .|+.|++||+.++...  +...
T Consensus       255 ~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~  327 (456)
T KOG0266|consen  255 SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKL  327 (456)
T ss_pred             cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeec
Confidence            77889999999999999999999999999999987     99999999999999976 8999999999984211  1222


Q ss_pred             cccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCE---EEEEEccCCC
Q 023672          214 LKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV---THVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v---~~~~~spdg~  278 (279)
                      +    .++..  ++++++|+| ++.++++++.|+.+++||++.+.++..+.+|...+   .+...+++|+
T Consensus       328 ~----~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (456)
T KOG0266|consen  328 L----SGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK  392 (456)
T ss_pred             c----cCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence            2    23333  599999999 99999999999999999999999999999887743   3334445554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.1e-30  Score=187.67  Aligned_cols=190  Identities=18%  Similarity=0.260  Sum_probs=165.7

Q ss_pred             eeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (279)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (279)
                      +++.+...+|...|.++.|-|.|.+++++++|.+|+.|++.++....                 ....|...|..+..  
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-----------------t~~~h~ewvr~v~v--  243 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-----------------TFPGHSEWVRMVRV--  243 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-----------------eccCchHhEEEEEe--
Confidence            34555889999999999999999999999999999999999875532                 23445556666644  


Q ss_pred             cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC----------C-----CEEEEe-cC
Q 023672          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----------G-----TKIFAG-YN  193 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~-~d  193 (279)
                           +.||.++++++.|.+|++|-+.++++...++.|..     +|.+++|-|.          +     .+++++ .|
T Consensus       244 -----~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  244 -----NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH-----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             -----cCCeeEEEecCCCceEEEEEeccchhhhhhhcccc-----ceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence                 78999999999999999999999999999999887     8999999773          1     366666 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      ++|++||+.++    .++.++    .+|...|..++|+| +|.+|+++.+|+++++||+++++++.++..|..-|+++.|
T Consensus       314 ktIk~wdv~tg----~cL~tL----~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  314 KTIKIWDVSTG----MCLFTL----VGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF  384 (406)
T ss_pred             ceEEEEeccCC----eEEEEE----ecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence            99999999996    666677    79999999999999 9999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 023672          274 LSSA  277 (279)
Q Consensus       274 spdg  277 (279)
                      +.+.
T Consensus       385 h~~~  388 (406)
T KOG0295|consen  385 HKTA  388 (406)
T ss_pred             CCCC
Confidence            8764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.2e-29  Score=202.66  Aligned_cols=189  Identities=26%  Similarity=0.380  Sum_probs=159.9

Q ss_pred             ccCCC-CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h-~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+| ...|.++.|+++|+.|++++.|+.+++|+......              .... ....|...|.+++|      
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------~~~~-~l~~h~~~v~~~~f------  211 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------NLLR-ELSGHTRGVSDVAF------  211 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------hhhc-cccccccceeeeEE------
Confidence            44444 78899999999999999999999999999965431              0000 11456678999988      


Q ss_pred             cCCCCcEEEEecCCCcEEEEEC-CCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                       +|++.++++++.|++|++||+ ..+..++++..|..     .|++++|+|+++++++| .|++|++||++++    ++.
T Consensus       212 -s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----~~~  281 (456)
T KOG0266|consen  212 -SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----ECV  281 (456)
T ss_pred             -CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccCC----eEE
Confidence             778999999999999999999 55588999999887     99999999999888877 9999999999983    343


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe--EEEEEeecCCC--EEEEEEccCCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGG--VTHVSKLSSAYT  279 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~--v~~~~~spdg~~  279 (279)
                      ..+    .+|...|++++|++ ++.+|++++.|+.|++||+.++.  ++..+..+...  ++.+.|+|+|+|
T Consensus       282 ~~l----~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~  348 (456)
T KOG0266|consen  282 RKL----KGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY  348 (456)
T ss_pred             Eee----eccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence            444    79999999999999 99999999999999999999999  66788777655  999999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.9e-30  Score=197.61  Aligned_cols=206  Identities=18%  Similarity=0.262  Sum_probs=167.0

Q ss_pred             eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+++|++.. +++++      ++.||..+|.+++|+++|..|++++.|+.|++||.++|+..                  
T Consensus       238 ~vklW~vy~~~~~lr------tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~------------------  293 (503)
T KOG0282|consen  238 LVKLWNVYDDRRCLR------TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL------------------  293 (503)
T ss_pred             eEEEEEEecCcceeh------hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE------------------
Confidence            566777654 44444      89999999999999999999999999999999999998663                  


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      ..+..+..++++.|+|+      +.+.+++|+.|+.|+.||+++++.++.+..|-.     .|..+.|-++|+.++++ .
T Consensus       294 ~~f~~~~~~~cvkf~pd------~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-----~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  294 SRFHLDKVPTCVKFHPD------NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-----AILDITFVDEGRRFISSSD  362 (503)
T ss_pred             EEEecCCCceeeecCCC------CCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-----heeeeEEccCCceEeeecc
Confidence            33455567778877554      237899999999999999999998888877665     89999999999988855 9


Q ss_pred             CCeEEEEEccCCCCceee---------------------------------------eeecccccCCCC--CceEEEEEc
Q 023672          193 NKSVRVFDVHRPGRDFEK---------------------------------------YSTLKGNKEGQA--GIMSAIAFS  231 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~---------------------------------------~~~~~~~~~~~~--~~v~~~~~s  231 (279)
                      |+.+++|+.+.+- +.+.                                       .......+.+|.  +.-..+.||
T Consensus       363 dks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  363 DKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             CccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence            9999999998741 1100                                       011122335553  456678999


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       232 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      | +|.+|++|+.||.+.+||.++.+++..++.|+.++..+.|+|-.
T Consensus       442 p-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  442 P-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             C-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence            9 99999999999999999999999999999999999999999953

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=8.5e-29  Score=174.07  Aligned_cols=211  Identities=14%  Similarity=0.214  Sum_probs=171.1

Q ss_pred             HhcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccC
Q 023672           26 QENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK  105 (279)
Q Consensus        26 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~  105 (279)
                      .+....+..-++.|...++.+..      ++.-..+.|+.+...|+++.||+++. ..|++||++++..           
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~r------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----------   73 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSR------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----------   73 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEE------EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----------
Confidence            34556677788999999999886      55556678999999999999998885 5899999997532           


Q ss_pred             CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672          106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                         .++ .....+.+.|..+.|       ..+|+++++|+.||+++|||++...+.+.+....      +|+++..+|+.
T Consensus        74 ---~Pv-~t~e~h~kNVtaVgF-------~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s------pVn~vvlhpnQ  136 (311)
T KOG0315|consen   74 ---NPV-ATFEGHTKNVTAVGF-------QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS------PVNTVVLHPNQ  136 (311)
T ss_pred             ---Cce-eEEeccCCceEEEEE-------eecCeEEEecCCCceEEEEeccCcccchhccCCC------CcceEEecCCc
Confidence               111 134456678998877       7799999999999999999999977766666553      99999999999


Q ss_pred             CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC------eEE
Q 023672          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------ELL  258 (279)
Q Consensus       186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~------~~~  258 (279)
                      ..|++| .+|.|++||+....    +...+.   ......|.++...| +|.+|+.+...|..++|++.+.      +++
T Consensus       137 teLis~dqsg~irvWDl~~~~----c~~~li---Pe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~  208 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENS----CTHELI---PEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPV  208 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCc----cccccC---CCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEh
Confidence            888888 99999999998731    111111   23346799999999 9999999999999999998754      467


Q ss_pred             EEEeecCCCEEEEEEccCCCC
Q 023672          259 YVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       259 ~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .+++.|++.+..+.+|||++|
T Consensus       209 ~k~~ah~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  209 HKFQAHNGHILRCLLSPDVKY  229 (311)
T ss_pred             hheecccceEEEEEECCCCcE
Confidence            889999999999999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=5.9e-29  Score=184.36  Aligned_cols=202  Identities=20%  Similarity=0.317  Sum_probs=162.5

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc---cc----c-ccccccCCCCcccceeeecCCCceEEEEe
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS---YD----V-NACSLAKDQDSYEASLVVTEGESVYDFCW  127 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  127 (279)
                      -.||.+.|-+++..++|.++++||.|.+|+||+.......   ..    . +.........+.......+|..+|.++.|
T Consensus       189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            3499999999999999999999999999999994322110   00    0 00000011122233455678889999999


Q ss_pred             eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (279)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~  206 (279)
                      ++        ...+++++.|.+|+.||+.++..+..+....      .+.++.++|..++|++| .|..+++||.++++.
T Consensus       269 ~d--------~~v~yS~SwDHTIk~WDletg~~~~~~~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  269 SD--------ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cC--------CCceEeecccceEEEEEeecccceeeeecCc------ceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            43        4589999999999999999999988888766      78999999999999977 999999999999644


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCCCEEEEEEccC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~spd  276 (279)
                      .... ..+    .+|.+.|.++.|+|.+...|++|+.|+++++||+|+.+ +++.+.+|.+.|.++.|+..
T Consensus       335 s~v~-~s~----~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~  400 (423)
T KOG0313|consen  335 SVVS-QSL----IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG  400 (423)
T ss_pred             ceeE-Eee----ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence            3333 233    69999999999999888999999999999999999887 99999999999999999865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.7e-30  Score=194.11  Aligned_cols=187  Identities=21%  Similarity=0.394  Sum_probs=159.5

Q ss_pred             ccCCCC-CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPN-NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ...+|. ..|++++|+|+...|+++|.||+|+|||.......                 ....+|+-.|.++.|+     
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-----------------~vL~GHgwdVksvdWH-----  231 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-----------------RVLRGHGWDVKSVDWH-----  231 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-----------------heeccCCCCcceeccC-----
Confidence            444554 89999999999999999999999999999754221                 1336677788888885     


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                        |...+|++++.|..|++||.+++.++.++..|..     .|..+.|+|++++|+++ .|..++++|+++.    +.+.
T Consensus       232 --P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~  300 (464)
T KOG0284|consen  232 --PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELF  300 (464)
T ss_pred             --CccceeEEccCCceeEeecCCCcchhhhhhhccc-----eEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHH
Confidence              4566999999999999999999999999999887     99999999999999965 9999999999963    3334


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~  278 (279)
                      .+    .+|...|+++.|+|-...+|.+|+.||.|..|.+...+++..+. +|...|++|+|+|=|.
T Consensus       301 ~~----r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh  363 (464)
T KOG0284|consen  301 TY----RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH  363 (464)
T ss_pred             Hh----hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence            44    68999999999999888999999999999999998777766554 6899999999999773

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.3e-28  Score=180.35  Aligned_cols=206  Identities=13%  Similarity=0.226  Sum_probs=166.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      ..++|+..++....      .+.+|++.|+++.|+.+|.+||||..+|.|+||+..++.....                +
T Consensus        87 ~AflW~~~~ge~~~------eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~----------------~  144 (399)
T KOG0296|consen   87 LAFLWDISTGEFAG------ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK----------------L  144 (399)
T ss_pred             eEEEEEccCCccee------EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE----------------e
Confidence            34678888777554      7899999999999999999999999999999999998754211                1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                       .   ..+..+.|    +.++|.+.+|+.|+.||.+.+|.+.++...+.+.+|..     ++++=.|.|+|+.++++ .|
T Consensus       145 -~---~e~~dieW----l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-----~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  145 -D---QEVEDIEW----LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-----PCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             -e---cccCceEE----EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-----CcccccccCCCceEEEEecC
Confidence             1   23444444    34477788999999999999999999888888888876     89999999999999988 99


Q ss_pred             CeEEEEEccCCCCceeee--------------------------------------------------------------
Q 023672          194 KSVRVFDVHRPGRDFEKY--------------------------------------------------------------  211 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~--------------------------------------------------------------  211 (279)
                      |+|++||+.++ .+...+                                                              
T Consensus       212 gti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  212 GTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             ceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            99999999983 221110                                                              


Q ss_pred             --------------------------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          212 --------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       212 --------------------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                                                ....+..-.|..+|..+.|-+  ..+|++++.+|.|+.||.|+|+++.++.+|.
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~  368 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQ  368 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCc
Confidence                                      000011134677888999977  4688899999999999999999999999999


Q ss_pred             CCEEEEEEccCCC
Q 023672          266 GGVTHVSKLSSAY  278 (279)
Q Consensus       266 ~~v~~~~~spdg~  278 (279)
                      .+|.+++.+|+++
T Consensus       369 ~~Il~f~ls~~~~  381 (399)
T KOG0296|consen  369 MGILDFALSPQKR  381 (399)
T ss_pred             hheeEEEEcCCCc
Confidence            9999999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=177.12  Aligned_cols=238  Identities=16%  Similarity=0.186  Sum_probs=172.6

Q ss_pred             cccceeeeeeEecCC-CCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc-----
Q 023672           28 NQQEYTWPLIRFDVP-PHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-----  101 (279)
Q Consensus        28 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-----  101 (279)
                      +.+.....+.+|++. ..+      .+-.+++|.++|..+.|++|++.|++++.|.+|+.||+++++........     
T Consensus        63 aSgG~Dr~I~LWnv~gdce------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN  136 (338)
T KOG0265|consen   63 ASGGSDRAIVLWNVYGDCE------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN  136 (338)
T ss_pred             eecCCcceEEEEecccccc------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee
Confidence            334444456666532 122      22268899999999999999999999999999999999998764322111     


Q ss_pred             ----------cc-cCCCCcccceeeecCCCceEEE--EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672          102 ----------SL-AKDQDSYEASLVVTEGESVYDF--CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD  168 (279)
Q Consensus       102 ----------~~-~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~  168 (279)
                                .+ ....+...........+.+..+  .+.-..+.|...+..+.+|+.|+.|++||++.+.....+.+|.
T Consensus       137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~  216 (338)
T KOG0265|consen  137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA  216 (338)
T ss_pred             ecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc
Confidence                      00 1112222222222222222111  1222233457788899999999999999999999999999998


Q ss_pred             ccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcE
Q 023672          169 AVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (279)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i  247 (279)
                      .     .|+.+..+|+|.++.+- .|.++++||++.--....++..+.....+..-....++|+| ++..+.+|+.|..+
T Consensus       217 D-----tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~v  290 (338)
T KOG0265|consen  217 D-----TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFV  290 (338)
T ss_pred             C-----ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceE
Confidence            7     99999999999999964 99999999998632222334444332222233456789999 99999999999999


Q ss_pred             EEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          248 AIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       248 ~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++||......++.+++|.+.|..++|+|.-
T Consensus       291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             EEeecccccEEEEcCCcceeEEEeeecCCC
Confidence            999999999999999999999999999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-28  Score=171.08  Aligned_cols=184  Identities=23%  Similarity=0.352  Sum_probs=157.3

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+..|.++|.++.|+-||++.++++.|.+|++|+...+.+..                 ....|+..|.++..       
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-----------------tYsghG~EVlD~~~-------   67 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-----------------TYSGHGHEVLDAAL-------   67 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-----------------eecCCCceeeeccc-------
Confidence            678899999999999999999999999999999988765432                 34567888888754       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +.|+..|++|+.|..|.+||+.+|+..+.+..|..     .|+.+.|+.+...+++| .|.++++||.+.  +.++.++.
T Consensus        68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS--~s~ePiQi  140 (307)
T KOG0316|consen   68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRS--RSFEPIQI  140 (307)
T ss_pred             cccccccccCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEccc--CCCCccch
Confidence            66888999999999999999999999999999987     99999999999999977 999999999996  33344444


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +    ......|.++..+.   ..+++|+.||+++.||++.|.+..-.-+  .+|+++.|++||+
T Consensus       141 l----dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~n  196 (307)
T KOG0316|consen  141 L----DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGN  196 (307)
T ss_pred             h----hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCC
Confidence            4    34466799998855   6899999999999999999998765554  4899999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.9e-28  Score=195.56  Aligned_cols=196  Identities=15%  Similarity=0.163  Sum_probs=166.1

Q ss_pred             eeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           53 FRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .....+|++.|.+++++..+ .+|+++|.|+++++|++...+....   ...     -........|...|++++.    
T Consensus       404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~---~~~-----~~~~~t~~aHdKdIN~Vai----  471 (775)
T KOG0319|consen  404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF---PIV-----LTCRYTERAHDKDINCVAI----  471 (775)
T ss_pred             hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc---cce-----ehhhHHHHhhcccccceEe----
Confidence            33688999999999998755 5899999999999999986221111   000     0001123456778888865    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                         +|+..++|+||.|.+.++|+++......++.+|..     .|+++.|+|..+.++++ .|.+|+||.+.+.    .+
T Consensus       472 ---a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-----Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~f----SC  539 (775)
T KOG0319|consen  472 ---APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-----GVWCVSFSKNDQLLATCSGDKTVKIWSISTF----SC  539 (775)
T ss_pred             ---cCCCceEEecccccceeeecccCceEEEEeeCCcc-----ceEEEEeccccceeEeccCCceEEEEEeccc----ee
Confidence               78899999999999999999999999999999987     99999999999999955 9999999999983    67


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      +.++    .||...|..+.|-. ++..|++++.||.|++|++.+++|+.++..|++.|++++-+|.+
T Consensus       540 lkT~----eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~  601 (775)
T KOG0319|consen  540 LKTF----EGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL  601 (775)
T ss_pred             eeee----cCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence            7777    89999999999999 99999999999999999999999999999999999999998865

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.8e-27  Score=191.42  Aligned_cols=194  Identities=14%  Similarity=0.198  Sum_probs=144.2

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+.++.......         .. ......|...|.+++|+|.   
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~---------~~-l~~L~gH~~~V~~l~f~P~---  136 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS---------DP-IVHLQGHTKKVGIVSFHPS---  136 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC---------cc-eEEecCCCCcEEEEEeCcC---
Confidence            4679999999999999 88999999999999999998653211100         00 1123456778999988543   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                         .+.+|++++.|++|++||+++++....+..|..     .|.+++|+|++.+|+++ .|+.|++||++++ .   ...
T Consensus       137 ---~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~---~v~  204 (493)
T PTZ00421        137 ---AMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-T---IVS  204 (493)
T ss_pred             ---CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCCEEEEEECCCC-c---EEE
Confidence               246899999999999999999998888877765     89999999999999966 9999999999984 2   222


Q ss_pred             ecccccCCCCCc-eEEEEEccCCCcEEEEEe----CCCcEEEEecCCCe-EEEEEeec-CCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGI-MSAIAFSPTHTGMLAIGS----YSQTSAIYREDNME-LLYVLHGQ-EGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~-v~~~~~sp~~~~~l~~~~----~dg~i~~wd~~~~~-~~~~~~~~-~~~v~~~~~spdg~  278 (279)
                      .+    .+|.+. +..+.|.+ ++..+++++    .|+.|++||+++.. ++.....+ ...+....|+||++
T Consensus       205 tl----~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~  272 (493)
T PTZ00421        205 SV----EAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN  272 (493)
T ss_pred             EE----ecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC
Confidence            33    456543 45678999 555665543    47899999998764 44444333 34566667888875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=181.98  Aligned_cols=201  Identities=16%  Similarity=0.229  Sum_probs=165.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      -+.+||..+...+.      .+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+...                 ..
T Consensus        91 ~V~vfD~k~r~iLR------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-----------------~~  147 (487)
T KOG0310|consen   91 HVKVFDMKSRVILR------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-----------------QA  147 (487)
T ss_pred             cEEEeccccHHHHH------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-----------------EE
Confidence            57788866655554      7889999999999999 556788999999999999997532                 11


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEec
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (279)
                      ....|...|.+.+|+|.      ++.++++|+.||+|++||+++. ..+..+.. +.     +|..+.+-|.|..++++.
T Consensus       148 ~l~~htDYVR~g~~~~~------~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~-----pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  148 ELSGHTDYVRCGDISPA------NDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GC-----PVESVLALPSGSLIASAG  215 (487)
T ss_pred             EecCCcceeEeeccccC------CCeEEEecCCCceEEEEEeccCCceeEEecC-CC-----ceeeEEEcCCCCEEEEcC
Confidence            34567778999988653      5679999999999999999987 55555553 33     899999999999999888


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS  272 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  272 (279)
                      ...|++||+-++++...   ..    ..|...|+|+++.. ++..|++|+-|+.+++||+.+.+.+..+. ..++|.+++
T Consensus       216 Gn~vkVWDl~~G~qll~---~~----~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsia  286 (487)
T KOG0310|consen  216 GNSVKVWDLTTGGQLLT---SM----FNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIA  286 (487)
T ss_pred             CCeEEEEEecCCceehh---hh----hcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEE
Confidence            89999999997643221   12    45888999999999 88999999999999999999999998888 678999999


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      .+||+++
T Consensus       287 vs~dd~t  293 (487)
T KOG0310|consen  287 VSPDDQT  293 (487)
T ss_pred             ecCCCce
Confidence            9998863

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.1e-28  Score=190.11  Aligned_cols=204  Identities=19%  Similarity=0.281  Sum_probs=172.2

Q ss_pred             ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      +....+++|+..+++-++      .+.+|.+.|.|++.+|...+++|+|.|-+|++||.+.+=.      +         
T Consensus        74 sDD~~IrVfnynt~ekV~------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa------~---------  132 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTGEKVK------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA------C---------  132 (794)
T ss_pred             cCCceEEEEecccceeeE------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee------e---------
Confidence            344477888888888777      7889999999999999999999999999999999985311      1         


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEE
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKI  188 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l  188 (279)
                       .....+|..-|.+++|+|.      |.+.+|+++.|++|++|.+.+..+..++.+|..     .|+|+.|-+.|  .+|
T Consensus       133 -~qtfeGH~HyVMqv~fnPk------D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-----GVN~Vdyy~~gdkpyl  200 (794)
T KOG0276|consen  133 -EQTFEGHEHYVMQVAFNPK------DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-----GVNCVDYYTGGDKPYL  200 (794)
T ss_pred             -eeEEcCcceEEEEEEecCC------CccceeeeeccccEEEEEcCCCCCceeeecccc-----CcceEEeccCCCcceE
Confidence             1155678889999999887      677999999999999999999999999999887     99999998876  577


Q ss_pred             EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC
Q 023672          189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG  267 (279)
Q Consensus       189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  267 (279)
                      ++| .|..++|||..+.    .+++++    +||...|..++|+| .-.++++|++||+++||+..+-++..++.-.-..
T Consensus       201 IsgaDD~tiKvWDyQtk----~CV~TL----eGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR  271 (794)
T KOG0276|consen  201 ISGADDLTIKVWDYQTK----SCVQTL----EGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER  271 (794)
T ss_pred             EecCCCceEEEeecchH----HHHHHh----hcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCce
Confidence            776 8999999999983    555566    89999999999999 8999999999999999999887776666655566


Q ss_pred             EEEEEEccC
Q 023672          268 VTHVSKLSS  276 (279)
Q Consensus       268 v~~~~~spd  276 (279)
                      |++++-.+.
T Consensus       272 vW~I~~~k~  280 (794)
T KOG0276|consen  272 VWCIAAHKG  280 (794)
T ss_pred             EEEEeecCC
Confidence            777765554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.4e-28  Score=178.31  Aligned_cols=209  Identities=14%  Similarity=0.264  Sum_probs=160.0

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccC-CCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-DQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+..|++++.+.+|++||.++|||+.|.+|+|+|++..-............ ...-++......|-.+|.++.|      
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F------  180 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF------  180 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee------
Confidence            577899999999999999999999999999999997432211111111000 1112333344567778888877      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                       +|...+|++|+.|++|+++|.......+.++....   ..+|.+++|+|.|.++++| .-..+++||+.+-    +++.
T Consensus       181 -HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd---~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~----Qcfv  252 (430)
T KOG0640|consen  181 -HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD---TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY----QCFV  252 (430)
T ss_pred             -cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc---cceeeeEeecCCCceEEEecCCCceeEEeccce----eEee
Confidence             55678999999999999999976544443332221   1289999999999999998 6689999999983    4433


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCC-CEEEEEEccCCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEG-GVTHVSKLSSAYT  279 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~-~v~~~~~spdg~~  279 (279)
                      ... ....|.+.|+++.+++ .+.+.++|+.||.|+|||--+++|+.++.. |.+ .|.+..|+.+|+|
T Consensus       253 san-Pd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky  319 (430)
T KOG0640|consen  253 SAN-PDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY  319 (430)
T ss_pred             ecC-cccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE
Confidence            322 3378999999999999 999999999999999999999999988763 654 7999999999986

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=6.3e-27  Score=166.30  Aligned_cols=167  Identities=16%  Similarity=0.194  Sum_probs=136.0

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      +..||+++|+|+..+-+.++|+||+.|.++++||+++++..                  .....+.+|..+.|       
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l------------------a~~k~~~~Vk~~~F-------  101 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL------------------ATWKTNSPVKRVDF-------  101 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE------------------EEeecCCeeEEEee-------
Confidence            89999999999999999999999999999999999988653                  23344567888766       


Q ss_pred             CCCCcEEEEecC-----CCcEEEEECC-------CCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEc
Q 023672          135 DPTSCVFASTTR-----DHPIHLWDAT-------TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV  201 (279)
Q Consensus       135 ~~~~~~l~s~~~-----d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~  201 (279)
                      +++|++++.+..     .+.|.++|++       ..++...+..+..     .++..-|.|-+++|++| .||.|..||.
T Consensus       102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-----kit~a~Wg~l~~~ii~Ghe~G~is~~da  176 (327)
T KOG0643|consen  102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-----KITSALWGPLGETIIAGHEDGSISIYDA  176 (327)
T ss_pred             ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-----ceeeeeecccCCEEEEecCCCcEEEEEc
Confidence            677887777643     4579999998       3445666766665     88999999999999988 9999999999


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~  259 (279)
                      +++..       +......|...|+.++++| +..++++++.|.+-++||+++.+++.
T Consensus       177 ~~g~~-------~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  177 RTGKE-------LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLK  226 (327)
T ss_pred             ccCce-------eeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEE
Confidence            98521       1122257788999999999 99999999999999999988765443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.4e-26  Score=162.81  Aligned_cols=203  Identities=17%  Similarity=0.268  Sum_probs=159.9

Q ss_pred             ceeeeeeEecCCCCcccceeeeee-ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           31 EYTWPLIRFDVPPHRTYHFYNQFR-TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        31 ~~~~~~~~~d~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .....+++|+...+..+   .+.. .-.+|+..|..++|+|.|++|++||-|.++.||.-..+....             
T Consensus        34 g~Dk~vriw~~~~~~s~---~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec-------------   97 (312)
T KOG0645|consen   34 GTDKAVRIWSTSSGDSW---TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC-------------   97 (312)
T ss_pred             cCCceEEEEecCCCCcE---EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE-------------
Confidence            33446778887753332   2222 345899999999999999999999999999999877543211             


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC---eeeEEEeccCccccccceeeEEECCCCC
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                        .....+|.+.|.+++|       +++|++||+|+.|..|-||.+..+   ++...+..|..     .|..+.|+|...
T Consensus        98 --v~~lEGHEnEVK~Vaw-------s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-----DVK~V~WHPt~d  163 (312)
T KOG0645|consen   98 --VATLEGHENEVKCVAW-------SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----DVKHVIWHPTED  163 (312)
T ss_pred             --EeeeeccccceeEEEE-------cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-----cccEEEEcCCcc
Confidence              1245678889999988       789999999999999999999754   46777777776     899999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ec
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQ  264 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~  264 (279)
                      +|+++ .|.+|++|+-.. +....+..++    .+|...|.+++|+| .|..|++++.|++++||...+.     +. .|
T Consensus       164 lL~S~SYDnTIk~~~~~~-dddW~c~~tl----~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~  232 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDED-DDDWECVQTL----DGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMH  232 (312)
T ss_pred             eeEEeccCCeEEEEeecC-CCCeeEEEEe----cCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhc
Confidence            99965 999999999886 5566777777    79999999999999 8999999999999999986522     22 14


Q ss_pred             CCCEEEEEEc
Q 023672          265 EGGVTHVSKL  274 (279)
Q Consensus       265 ~~~v~~~~~s  274 (279)
                      ...+..++|.
T Consensus       233 sr~~Y~v~W~  242 (312)
T KOG0645|consen  233 SRALYDVPWD  242 (312)
T ss_pred             ccceEeeeec
Confidence            4555555555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=7.2e-27  Score=176.22  Aligned_cols=203  Identities=20%  Similarity=0.245  Sum_probs=166.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      ++.++|.+..+.+.      ++.||.-.|+.+.|+|+...+++++.|-.|+||.......                 ...
T Consensus       242 ~av~~d~~s~q~l~------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------~~~  298 (506)
T KOG0289|consen  242 TAVLFDKPSNQILA------TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------PTS  298 (506)
T ss_pred             ceEEEecchhhhhh------hccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------ccc
Confidence            44555555555554      8999999999999999999999999999999999874321                 114


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...|.++|+.+..       +|.|.||++++.|++..+.|++++..+........   .-.+++.+|+|||.++.+| .|
T Consensus       299 ~~~h~~~V~~ls~-------h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s---~v~~ts~~fHpDgLifgtgt~d  368 (506)
T KOG0289|consen  299 SRPHEEPVTGLSL-------HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS---DVEYTSAAFHPDGLIFGTGTPD  368 (506)
T ss_pred             cccccccceeeee-------ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc---cceeEEeeEcCCceEEeccCCC
Confidence            4556678888865       77899999999999999999999988777654321   1268899999999999988 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-CCEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVS  272 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~  272 (279)
                      +.+++||+..+        .....+.+|.++|..++|+. ||.+|+++++|+.|++||+|..+...++...+ .+|.++.
T Consensus       369 ~~vkiwdlks~--------~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~  439 (506)
T KOG0289|consen  369 GVVKIWDLKSQ--------TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS  439 (506)
T ss_pred             ceEEEEEcCCc--------cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence            99999999974        23334479999999999999 99999999999999999999988877777543 3799999


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      |.+.|+|
T Consensus       440 fD~SGt~  446 (506)
T KOG0289|consen  440 FDQSGTY  446 (506)
T ss_pred             EcCCCCe
Confidence            9999876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=6.3e-29  Score=182.79  Aligned_cols=194  Identities=16%  Similarity=0.236  Sum_probs=161.9

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      +.+.-.+.+||..+..+..      .+.||++.|.|+.|..  +.+++||.|.+|+|||+++++...             
T Consensus       213 GlrDnTikiWD~n~~~c~~------~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~-------------  271 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLECLK------ILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN-------------  271 (499)
T ss_pred             ccccCceEEeccccHHHHH------hhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh-------------
Confidence            3444567889988887776      8999999999999974  589999999999999999886533             


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe---eeEEEeccCccccccceeeEEECCCCC
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                          ...+|.+.|..+.|         +..++++++.|.++.+||+.+..   +...+.+|..     .|..+.|+.  +
T Consensus       272 ----tlihHceaVLhlrf---------~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-----aVNvVdfd~--k  331 (499)
T KOG0281|consen  272 ----TLIHHCEAVLHLRF---------SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-----AVNVVDFDD--K  331 (499)
T ss_pred             ----HHhhhcceeEEEEE---------eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-----heeeecccc--c
Confidence                45678889999988         45599999999999999998764   2344556665     888998865  4


Q ss_pred             EEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          187 KIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       187 ~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      ++++ +.|.+|++|++.+.    +.+.++    .+|...|.|+.+   ++.++++|+.|.+|++||+..|.++..+++|+
T Consensus       332 yIVsASgDRTikvW~~st~----efvRtl----~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  332 YIVSASGDRTIKVWSTSTC----EFVRTL----NGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             eEEEecCCceEEEEeccce----eeehhh----hcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence            8885 49999999999984    444444    899999998887   67899999999999999999999999999999


Q ss_pred             CCEEEEEEcc
Q 023672          266 GGVTHVSKLS  275 (279)
Q Consensus       266 ~~v~~~~~sp  275 (279)
                      .-|+++.|..
T Consensus       401 eLvRciRFd~  410 (499)
T KOG0281|consen  401 ELVRCIRFDN  410 (499)
T ss_pred             HhhhheeecC
Confidence            9999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2e-27  Score=168.22  Aligned_cols=198  Identities=18%  Similarity=0.298  Sum_probs=160.6

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      +...+|...|.+++|+-+|..|++|+.|+++++|+++.......               ....+|+..|-.++|.|.   
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------~~~~gh~~svdql~w~~~---   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------LVYRGHTDSVDQLCWDPK---   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------hcccCCCcchhhheeCCC---
Confidence            36778999999999999999999999999999999986532211               133456778999999776   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce----
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF----  208 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~----  208 (279)
                         +...+++++.|.+|++||++++++.........     . .-+.|+|+|.+++++ .|..|...|.++.....    
T Consensus        76 ---~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-----n-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~  146 (313)
T KOG1407|consen   76 ---HPDLFATASGDKTIRIWDIRSGKCTARIETKGE-----N-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF  146 (313)
T ss_pred             ---CCcceEEecCCceEEEEEeccCcEEEEeeccCc-----c-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence               344899999999999999999999888776553     3 358999999999977 89999999988621000    


Q ss_pred             -------------------------eee--e--ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672          209 -------------------------EKY--S--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (279)
Q Consensus       209 -------------------------~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~  259 (279)
                                               +.+  .  .......+|.....|+.|+| +|.++|+|+.|-.+.+||+...-|+.
T Consensus       147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhhe
Confidence                                     000  0  01112368899999999999 99999999999999999999999999


Q ss_pred             EEeecCCCEEEEEEccCCCC
Q 023672          260 VLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       260 ~~~~~~~~v~~~~~spdg~~  279 (279)
                      .+..++-+|+.+.||.||++
T Consensus       226 ~isRldwpVRTlSFS~dg~~  245 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRM  245 (313)
T ss_pred             eeccccCceEEEEeccCcce
Confidence            99999999999999999986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-27  Score=166.25  Aligned_cols=183  Identities=21%  Similarity=0.337  Sum_probs=151.2

Q ss_pred             CCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .+.+..++|+++. +.+++++.||+++|||+.....               ++ .....|...|+++.|++.      .+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---------------Pi-~~~kEH~~EV~Svdwn~~------~r  117 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---------------PI-HKFKEHKREVYSVDWNTV------RR  117 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------ch-hHHHhhhhheEEeccccc------cc
Confidence            4679999999954 5788999999999999653211               11 133457779999999764      56


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEE-ecCCeEEEEEccCCCCceeeeeeccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ..+++++.|++|++|+...++.+.++.++..     .|+...|+|.. +++++ +.|+.+++||++.+++...    +  
T Consensus       118 ~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~-----~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~----i--  186 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS-----CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS----I--  186 (311)
T ss_pred             eeEEeeccCCceEeecCCCCcceEeecCCcc-----EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE----E--
Confidence            6888889999999999999999999998886     89999999974 55564 4999999999998654332    3  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEEccCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg  277 (279)
                        ..|...+.++.|+.-+..+|+||+.|+.|+.||+++. .++..+.+|.-.|+.++|||.-
T Consensus       187 --~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~  246 (311)
T KOG0277|consen  187 --EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH  246 (311)
T ss_pred             --EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence              5788899999999988899999999999999999976 4788999999999999999963

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=180.08  Aligned_cols=189  Identities=17%  Similarity=0.299  Sum_probs=155.7

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      |....+.|..|+|||++|++|+.||-|.+|+..+++...+.....    .+     .......+|.+++|       +.|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----qd-----~fMMmd~aVlci~F-------SRD  274 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----QD-----NFMMMDDAVLCISF-------SRD  274 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh----hc-----ceeecccceEEEee-------ccc
Confidence            456679999999999999999999999999999987654432211    11     22334568888877       788


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEe-ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      ...+++|+.||.|++|.+++|.+++.+. .|..     .|+|+.|+.|+..++++ .|.++++.-++.+    +++..+ 
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk-----Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEf-  344 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK-----GVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEF-  344 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhcc-----CeeEEEEccCcchhhcccccceEEEeccccc----hhHHHh-
Confidence            9999999999999999999999999887 4554     89999999999888855 9999999999984    333344 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec--CCCEEEEEEccC
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVSKLSS  276 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~spd  276 (279)
                         .+|...|+.+.|++ +|..+++++.||+|++|+..+.+|+.+++..  +-+|.++..-|.
T Consensus       345 ---rGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  345 ---RGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             ---cCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence               79999999999999 9999999999999999999999999888753  346777766654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=2.1e-27  Score=175.22  Aligned_cols=200  Identities=20%  Similarity=0.261  Sum_probs=171.0

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      --+.+||+.++++..      ++.||-..|..+++|+-..||++++.|+.|+.||++..+....                
T Consensus       173 rtikIwDlatg~Lkl------tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~----------------  230 (460)
T KOG0285|consen  173 RTIKIWDLATGQLKL------TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH----------------  230 (460)
T ss_pred             ceeEEEEcccCeEEE------eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH----------------
Confidence            356799999999876      8999999999999999999999999999999999997654322                


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                       ..+|-..|+++..       .|.-..|++|+.|.++++||+++...+..+.+|..     +|..+.+.|..-.+++| .
T Consensus       231 -YhGHlS~V~~L~l-------hPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-----~V~~V~~~~~dpqvit~S~  297 (460)
T KOG0285|consen  231 -YHGHLSGVYCLDL-------HPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-----PVASVMCQPTDPQVITGSH  297 (460)
T ss_pred             -hccccceeEEEec-------cccceeEEecCCcceEEEeeecccceEEEecCCCC-----cceeEEeecCCCceEEecC
Confidence             2344457888866       55667999999999999999999999999999987     99999999877666655 9


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS  272 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  272 (279)
                      |++|++||++.+    +...++    ..|...|.+++.+| ....+++++.|. |+-|++..|+.+..+.+|+.-|.+++
T Consensus       298 D~tvrlWDl~ag----kt~~tl----t~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~  367 (460)
T KOG0285|consen  298 DSTVRLWDLRAG----KTMITL----THHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLS  367 (460)
T ss_pred             CceEEEeeeccC----ceeEee----ecccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhccccccceeeeee
Confidence            999999999985    333334    57888999999999 888999998775 89999999999999999999999999


Q ss_pred             EccCCC
Q 023672          273 KLSSAY  278 (279)
Q Consensus       273 ~spdg~  278 (279)
                      ...||-
T Consensus       368 ~nsD~v  373 (460)
T KOG0285|consen  368 VNSDGV  373 (460)
T ss_pred             eccCce
Confidence            998874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.9e-27  Score=179.00  Aligned_cols=215  Identities=17%  Similarity=0.215  Sum_probs=171.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|.+.++.++.      .+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+..-....        ..........
T Consensus       104 ~lYlWelssG~LL~------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~--------~~~~~~p~~~  169 (476)
T KOG0646|consen  104 NLYLWELSSGILLN------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD--------NDHSVKPLHI  169 (476)
T ss_pred             cEEEEEeccccHHH------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc--------cCCCccceee
Confidence            78999999999988      678999999999999999999999999999999986421110        0111222235


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...|.-+|+++...+     .+....+++++.|.++++||+..+..+.++..+.      .+.+++.+|-+..+++| .+
T Consensus       170 f~~HtlsITDl~ig~-----Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  170 FSDHTLSITDLQIGS-----GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             eccCcceeEEEEecC-----CCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEecCCc
Confidence            566778888887533     3345689999999999999999999998888776      78999999999999988 99


Q ss_pred             CeEEEEEccCCC--------CceeeeeecccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          194 KSVRVFDVHRPG--------RDFEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       194 ~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      |.|.+.++....        +......+-...+.+|.+  +|+|++.+- +|.+|++|+.||.++|||+.+.++++++..
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence            999999987532        001111122233368887  999999999 999999999999999999999999988886


Q ss_pred             cCCCEEEEEEcc
Q 023672          264 QEGGVTHVSKLS  275 (279)
Q Consensus       264 ~~~~v~~~~~sp  275 (279)
                      ..++|+.+.+.|
T Consensus       318 ~kgpVtnL~i~~  329 (476)
T KOG0646|consen  318 SKGPVTNLQINP  329 (476)
T ss_pred             hccccceeEeec
Confidence            678888888844

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=168.81  Aligned_cols=205  Identities=16%  Similarity=0.219  Sum_probs=168.2

Q ss_pred             cccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672           28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        28 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      +.....+...+||..++.-++.       ..|..-|.+++|+.|.++|+||+.+..++|||++......           
T Consensus        75 asaaadftakvw~a~tgdelhs-------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-----------  136 (334)
T KOG0278|consen   75 ASAAADFTAKVWDAVTGDELHS-------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-----------  136 (334)
T ss_pred             hhhcccchhhhhhhhhhhhhhh-------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----------
Confidence            3344556677899998888763       3488889999999999999999999999999998643211           


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCE
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK  187 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (279)
                           .-...|.+.|..+.|+       ...+.|++++.|++||+||.+++..++.+....      +|.++.++++|++
T Consensus       137 -----~E~~ghtg~Ir~v~wc-------~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~i  198 (334)
T KOG0278|consen  137 -----KEISGHTGGIRTVLWC-------HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRI  198 (334)
T ss_pred             -----hhhcCCCCcceeEEEe-------ccCceEEeeccCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCE
Confidence                 1234566788888884       245577788999999999999999999998776      8999999999999


Q ss_pred             EEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE-eecCC
Q 023672          188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEG  266 (279)
Q Consensus       188 l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~  266 (279)
                      |..+..+.|.+||..+-    ..+...     .-...|.+..++| +..++++|++|..++.||..+++.+..+ ++|-+
T Consensus       199 lTia~gssV~Fwdaksf----~~lKs~-----k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g  268 (334)
T KOG0278|consen  199 LTIAYGSSVKFWDAKSF----GLLKSY-----KMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG  268 (334)
T ss_pred             EEEecCceeEEeccccc----cceeec-----cCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence            99999999999999872    222222     1234688999999 8899999999999999999999998886 89999


Q ss_pred             CEEEEEEccCCC
Q 023672          267 GVTHVSKLSSAY  278 (279)
Q Consensus       267 ~v~~~~~spdg~  278 (279)
                      +|.++.|+|||.
T Consensus       269 pVhcVrFSPdGE  280 (334)
T KOG0278|consen  269 PVHCVRFSPDGE  280 (334)
T ss_pred             ceEEEEECCCCc
Confidence            999999999984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-26  Score=162.52  Aligned_cols=204  Identities=13%  Similarity=0.118  Sum_probs=161.4

Q ss_pred             hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCC
Q 023672           27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD  106 (279)
Q Consensus        27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  106 (279)
                      .+.......+.+||+.+++..+      .+.+|.+.|+.++|+.+...+++|+-|.++++||.+.....           
T Consensus        74 f~s~GgDk~v~vwDV~TGkv~R------r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-----------  136 (307)
T KOG0316|consen   74 FASCGGDKAVQVWDVNTGKVDR------RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-----------  136 (307)
T ss_pred             cccCCCCceEEEEEcccCeeee------ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-----------
Confidence            3344455578999999999987      78899999999999999999999999999999999864321           


Q ss_pred             CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672          107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       107 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                         ++..+ ......|.++..         .+..|+.|+.||+++.||++.|+....+-.+       +|++++|+++++
T Consensus       137 ---PiQil-dea~D~V~Si~v---------~~heIvaGS~DGtvRtydiR~G~l~sDy~g~-------pit~vs~s~d~n  196 (307)
T KOG0316|consen  137 ---PIQIL-DEAKDGVSSIDV---------AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH-------PITSVSFSKDGN  196 (307)
T ss_pred             ---ccchh-hhhcCceeEEEe---------cccEEEeeccCCcEEEEEeecceeehhhcCC-------cceeEEecCCCC
Confidence               11111 122235655544         5668999999999999999999876554432       889999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCc--eEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI--MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      ..+++ .|+++++.|-.++    +.+...    .+|.+.  -..++++. ....+++|++||.|++||+.....+..+..
T Consensus       197 c~La~~l~stlrLlDk~tG----klL~sY----kGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  197 CSLASSLDSTLRLLDKETG----KLLKSY----KGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             EEEEeeccceeeecccchh----HHHHHh----cccccceeeeeeeecc-cceeEEeccCCceEEEEEeccceeeeeecc
Confidence            98866 9999999999984    222233    566543  34567777 778999999999999999999999999998


Q ss_pred             cCCC-EEEEEEccC
Q 023672          264 QEGG-VTHVSKLSS  276 (279)
Q Consensus       264 ~~~~-v~~~~~spd  276 (279)
                      +... |.+++++|.
T Consensus       268 ~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  268 VSTVIVTDLSCHPT  281 (307)
T ss_pred             CCceeEEeeecccC
Confidence            8877 899999985

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.4e-25  Score=183.35  Aligned_cols=178  Identities=15%  Similarity=0.231  Sum_probs=130.4

Q ss_pred             eccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      ..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++......  .      ... ......|...|.+++|     
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i------~~p-~~~L~gH~~~V~sVaf-----  133 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--I------KDP-QCILKGHKKKISIIDW-----  133 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--c------ccc-eEEeecCCCcEEEEEE-----
Confidence            367899999999999996 789999999999999999864221000  0      000 0123456778999988     


Q ss_pred             ccCCCCc-EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          133 ASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       133 ~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                        +|++. ++++++.|++|++||+++++....+..+ .     .|.+++|+|+|.+|+++ .|+.|++||++++    ..
T Consensus       134 --~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-----~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~  201 (568)
T PTZ00420        134 --NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-----KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EI  201 (568)
T ss_pred             --CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-----cEEEEEECCCCCEEEEEecCCEEEEEECCCC----cE
Confidence              45555 4678999999999999999877666532 2     78999999999999966 8999999999984    22


Q ss_pred             eeecccccCCCCCceEE-----EEEccCCCcEEEEEeCCC----cEEEEecCC-CeEEEEEe
Q 023672          211 YSTLKGNKEGQAGIMSA-----IAFSPTHTGMLAIGSYSQ----TSAIYREDN-MELLYVLH  262 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~-----~~~sp~~~~~l~~~~~dg----~i~~wd~~~-~~~~~~~~  262 (279)
                      ...+    .+|.+.+.+     ..|++ ++.+|++++.|+    .|+|||+++ ++++..+.
T Consensus       202 i~tl----~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        202 ASSF----HIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             EEEE----ecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence            2333    566655433     34568 777888877664    799999995 56665554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=4e-27  Score=176.43  Aligned_cols=205  Identities=19%  Similarity=0.209  Sum_probs=162.0

Q ss_pred             ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+....++|++...+..+      ++.||++.|+++.|......+++|+.|.+|++||+....+....            
T Consensus       238 s~d~~~r~Wnvd~~r~~~------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~------------  299 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRH------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV------------  299 (459)
T ss_pred             cCCCceeeeeccchhhhh------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc------------
Confidence            334467788988888887      89999999999999987777999999999999999875442211            


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                            ..+..+.++..         ....+++|-.|++|++||+++..+....+.++      .|+++..++++..+.+
T Consensus       300 ------l~~S~cnDI~~---------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg------~vtSl~ls~~g~~lLs  358 (459)
T KOG0288|consen  300 ------LPGSQCNDIVC---------SISDVISGHFDKKVRFWDIRSADKTRSVPLGG------RVTSLDLSMDGLELLS  358 (459)
T ss_pred             ------cccccccceEe---------cceeeeecccccceEEEeccCCceeeEeecCc------ceeeEeeccCCeEEee
Confidence                  11223444433         23478899999999999999999999988877      8999999999988885


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC--C
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--G  267 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~  267 (279)
                      + .|..+.++|+++. . ..........+.++  ..+.++||| ++.++++|+.||.|+||++.++++...+.....  .
T Consensus       359 ssRDdtl~viDlRt~-e-I~~~~sA~g~k~as--DwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~a  433 (459)
T KOG0288|consen  359 SSRDDTLKVIDLRTK-E-IRQTFSAEGFKCAS--DWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAA  433 (459)
T ss_pred             ecCCCceeeeecccc-c-EEEEeecccccccc--ccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcc
Confidence            5 9999999999973 1 12112222222333  488999999 999999999999999999999999988886554  5


Q ss_pred             EEEEEEccCCCC
Q 023672          268 VTHVSKLSSAYT  279 (279)
Q Consensus       268 v~~~~~spdg~~  279 (279)
                      |++++|+|.|.+
T Consensus       434 I~s~~W~~sG~~  445 (459)
T KOG0288|consen  434 ITSLSWNPSGSG  445 (459)
T ss_pred             eEEEEEcCCCch
Confidence            999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-27  Score=168.18  Aligned_cols=201  Identities=20%  Similarity=0.297  Sum_probs=158.0

Q ss_pred             eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+++||+.. ..+++      .++.|...|.++.|++ +++.++++|.|++|++|+...+....                
T Consensus        84 SLrl~d~~~~s~Pi~------~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~----------------  141 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIH------KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ----------------  141 (311)
T ss_pred             eEEEeccCCCCcchh------HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE----------------
Confidence            456677432 23333      6778999999999999 66678899999999999998654322                


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  191 (279)
                       ...+|..-|+...|+|.      ..+.+++++.|+++++||++.......+..|..     .+.++.|+.-. +.+++|
T Consensus       142 -Tf~gh~~~Iy~a~~sp~------~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-----Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  142 -TFNGHNSCIYQAAFSPH------IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-----EILCCDWSKYNHNVLATG  209 (311)
T ss_pred             -eecCCccEEEEEecCCC------CCCeEEEccCCceEEEEEecCCCceeEEEeccc-----eeEeecccccCCcEEEec
Confidence             24457778999999887      455999999999999999987544444777775     88999999865 455566


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEE
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVT  269 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~  269 (279)
                       .|+.|+.||++.-..++.   .+    .+|..+|..++|||....+|++++.|-+++|||.... .++.+...|+.-|.
T Consensus       210 ~vd~~vr~wDir~~r~pl~---eL----~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~  282 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRTPLF---EL----NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC  282 (311)
T ss_pred             CCCceEEEEehhhccccce---ee----cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe
Confidence             999999999997433322   22    7999999999999977889999999999999998744 45677778888899


Q ss_pred             EEEEccC
Q 023672          270 HVSKLSS  276 (279)
Q Consensus       270 ~~~~spd  276 (279)
                      ++.||+-
T Consensus       283 g~Dws~~  289 (311)
T KOG0277|consen  283 GLDWSLF  289 (311)
T ss_pred             ccccccc
Confidence            9998863

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.3e-27  Score=175.29  Aligned_cols=196  Identities=19%  Similarity=0.256  Sum_probs=144.8

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ....++.+|..+|.-+.||||.++|++|+.|..+.+||+.++.....                +...++..+.+++|   
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~----------------y~~~~~~S~~sc~W---  320 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL----------------YPSGLGFSVSSCAW---  320 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh----------------cccCcCCCcceeEE---
Confidence            34558999999999999999999999999999999999998755322                11123456677777   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCe----------eeEEEe------------ccC--------------cccccc
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYR------------AYD--------------AVDEIT  174 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~----------~~~~~~------------~~~--------------~~~~~~  174 (279)
                          .|||..+++|+.|++|..||++...          .+..+.            .+.              -.....
T Consensus       321 ----~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~  396 (519)
T KOG0293|consen  321 ----CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ  396 (519)
T ss_pred             ----ccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC
Confidence                4566677777777777777765210          000000            000              001223


Q ss_pred             ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      +|++++++.+++++++. .+..+++||+..+    ..+..+    .||..  .+..-||.-.+..++++|++|+.|+||+
T Consensus       397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY----~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh  468 (519)
T KOG0293|consen  397 PITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKY----FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH  468 (519)
T ss_pred             ceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHh----hcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence            89999999999999988 9999999999863    222222    45543  4556678764668999999999999999


Q ss_pred             cCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          252 EDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ..+++++.++.+|...|++++|+|-.
T Consensus       469 r~sgkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  469 RISGKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             ccCCceeEeecCCcceeeEEecCCCC
Confidence            99999999999999999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=7.3e-28  Score=183.64  Aligned_cols=190  Identities=15%  Similarity=0.243  Sum_probs=157.9

Q ss_pred             eeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           52 QFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ...+..||+..|+++.|.| .+.+|++++.|+.|+||++-..+                .......+|..+|.+++|   
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~Vrd~~~---  266 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKPVRDASF---  266 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhhhhhhhc---
Confidence            3447899999999999999 88999999999999999997421                111255678889999988   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCce
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~  208 (279)
                          +++|..+++++.|+.|++||+++|+++..+....      .++|+.|+|++ +.+++| .|+.|+.||+|++    
T Consensus       267 ----s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----  332 (503)
T KOG0282|consen  267 ----NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----  332 (503)
T ss_pred             ----cccCCeeeeeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccch----
Confidence                7789999999999999999999999999998766      78999999998 555677 9999999999995    


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~~  279 (279)
                      +.++.+    ..|-+.|..+.|-+ ++..+++.++|++++||+.+.+.++..+.. +.....++..+|+|.+
T Consensus       333 kvvqeY----d~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~  399 (503)
T KOG0282|consen  333 KVVQEY----DRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW  399 (503)
T ss_pred             HHHHHH----HhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence            333333    67888999999999 999999999999999999998877654332 2335668888888764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=1.9e-26  Score=168.03  Aligned_cols=248  Identities=44%  Similarity=0.755  Sum_probs=196.6

Q ss_pred             HHhcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccccc
Q 023672           25 AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        25 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      ..+......|+ +.|...+.........+.+.. ......++.|+|||..|++-+.|..+.+|++...-........   
T Consensus        16 ~~ede~~~s~n-~~y~qg~~~l~g~~~~~stt~-p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~---   90 (406)
T KOG2919|consen   16 DDEDEKKKSWN-FGYVQGPINLGGNVIAFSTTK-PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP---   90 (406)
T ss_pred             CcccchhccCc-cceeecceeccCceEEeccCC-chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc---
Confidence            33444556666 555554444433333332222 4566788999999999999999999999999754322211100   


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT  184 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (279)
                       ..-.....+....+..|++.+|.+.+....|+..++++.+.+..|++||.-+|+....+......+......+++|+||
T Consensus        91 -~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D  169 (406)
T KOG2919|consen   91 -LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD  169 (406)
T ss_pred             -cccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC
Confidence             1112334466678889999999999999999999999999999999999999999999988877766667889999999


Q ss_pred             CCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       185 ~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      |..|++|....|++||+..+++......++.....+..+-+.+++|+|.+...++.|+....+-||.-....++..+-+|
T Consensus       170 GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh  249 (406)
T KOG2919|consen  170 GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH  249 (406)
T ss_pred             CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc
Confidence            99999999999999999766777777666665556778889999999977789999999999999999999999999999


Q ss_pred             CCCEEEEEEccCCC
Q 023672          265 EGGVTHVSKLSSAY  278 (279)
Q Consensus       265 ~~~v~~~~~spdg~  278 (279)
                      .++|+.+.|++||.
T Consensus       250 ~gGvThL~~~edGn  263 (406)
T KOG2919|consen  250 GGGVTHLQWCEDGN  263 (406)
T ss_pred             CCCeeeEEeccCcC
Confidence            99999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.7e-25  Score=172.72  Aligned_cols=186  Identities=25%  Similarity=0.348  Sum_probs=155.6

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|++++|++++.||.|++|++.++...                 .....+...+..+.|       
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~-------   59 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAA-------   59 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEE-------
Confidence            56789999999999999999999999999999999865321                 122334456667766       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +++++.+++++.++.|++||+.+++....+..+..     .+.++.|+|++.+++++ .++.+++||+++.    +....
T Consensus        60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~  130 (289)
T cd00200          60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTT  130 (289)
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEE
Confidence            66778999999999999999998877777776654     78999999998888877 5999999999863    22223


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +    ..|...+.+++|+| ++.++++++.|+.|++||+++++++..+..|...|.+++|+|+|+
T Consensus       131 ~----~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  190 (289)
T cd00200         131 L----RGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE  190 (289)
T ss_pred             e----ccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC
Confidence            3    46778899999999 788898888899999999999999999999998999999999984

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=1.7e-25  Score=172.62  Aligned_cols=228  Identities=20%  Similarity=0.256  Sum_probs=164.5

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-----------
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-----------  102 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-----------  102 (279)
                      -.+++||-.++..+..+.   .-.+|++.|.+++|+||++.|+|++.|.+++|||+.+..+........           
T Consensus       212 gki~iyDGktge~vg~l~---~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW  288 (603)
T KOG0318|consen  212 GKIYIYDGKTGEKVGELE---DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW  288 (603)
T ss_pred             ccEEEEcCCCccEEEEec---CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence            367788888888765322   356999999999999999999999999999999999876532221110           


Q ss_pred             ---------------ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE-----
Q 023672          103 ---------------LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-----  162 (279)
Q Consensus       103 ---------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~-----  162 (279)
                                     .....+..+.....+|...|+++.       .++++.+|++|+.||.|.-|+..++..-+     
T Consensus       289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt-------v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~  361 (603)
T KOG0318|consen  289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT-------VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG  361 (603)
T ss_pred             eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE-------EcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence                           000111113334445666666664       48889999999999999999997653211     


Q ss_pred             ------EEeccCcc-----------------------------------------------------------------c
Q 023672          163 ------TYRAYDAV-----------------------------------------------------------------D  171 (279)
Q Consensus       163 ------~~~~~~~~-----------------------------------------------------------------~  171 (279)
                            .+......                                                                 .
T Consensus       362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~  441 (603)
T KOG0318|consen  362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP  441 (603)
T ss_pred             ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence                  11100000                                                                 0


Q ss_pred             cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                      -.....+++++|++..+++| .|+.|+||.+.... ..+.. ..    ..|.++|+++++|| ++.+|++|...+.+.+|
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~-l~ee~-~~----~~h~a~iT~vaySp-d~~yla~~Da~rkvv~y  514 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE-LKEEA-KL----LEHRAAITDVAYSP-DGAYLAAGDASRKVVLY  514 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCc-cccee-ee----ecccCCceEEEECC-CCcEEEEeccCCcEEEE
Confidence            01134578899999999976 99999999998632 12221 11    58899999999999 99999999999999999


Q ss_pred             ecCCCeEE-EEEeecCCCEEEEEEccCCC
Q 023672          251 REDNMELL-YVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       251 d~~~~~~~-~~~~~~~~~v~~~~~spdg~  278 (279)
                      |+.+.+.. ..+.-|...|.+++|+|+.+
T Consensus       515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~  543 (603)
T KOG0318|consen  515 DVASREVKTNRWAFHTAKINCVAWSPNNK  543 (603)
T ss_pred             EcccCceecceeeeeeeeEEEEEeCCCce
Confidence            99988764 34455999999999999975

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.3e-27  Score=181.74  Aligned_cols=212  Identities=17%  Similarity=0.239  Sum_probs=149.5

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc------------ccccccC-----------------
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV------------NACSLAK-----------------  105 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~-----------------  105 (279)
                      .+.+|+..|.++++.|.|.+|++|+.|-+|++||+.........            +......                 
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence            68889999999999999999999999999999999754321000            0000000                 


Q ss_pred             -----------CCCccccee--eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccc
Q 023672          106 -----------DQDSYEASL--VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVD  171 (279)
Q Consensus       106 -----------~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~  171 (279)
                                 ..+.++..+  .-+|...+++.+|+|.      +...+++++.||++++||+...+ .+..++.....+
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~------~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD------NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccC------cccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence                       011111111  1133345667777665      45579999999999999998653 344554443333


Q ss_pred             cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEE
Q 023672          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSA  248 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~  248 (279)
                      ..-.++.++|+|+++.|++| .||.|.+|+.....  ..   .......+|..  .|+|+.||+ +|++|++-+.|++++
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~--v~---p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT--VR---PVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLK  389 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcc--cc---cceEeeeccCCCCceeEEEecc-ccchhhhccCCCcee
Confidence            44478999999999999977 99999999986421  11   11122256766  899999999 999999999999999


Q ss_pred             EEecCCC-eEEEEEeecC--CCEEEEEEccCCC
Q 023672          249 IYREDNM-ELLYVLHGQE--GGVTHVSKLSSAY  278 (279)
Q Consensus       249 ~wd~~~~-~~~~~~~~~~--~~v~~~~~spdg~  278 (279)
                      +||++.. +++....+..  -+-+.++||||.+
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k  422 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK  422 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCce
Confidence            9999976 4666655433  2567899999865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.8e-26  Score=174.80  Aligned_cols=215  Identities=20%  Similarity=0.336  Sum_probs=164.4

Q ss_pred             eeeEecCCCCcccc----eeeeeeccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           35 PLIRFDVPPHRTYH----FYNQFRTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .+++||..+.....    ..+.-..+.||.+.=.+++|++... .|++++.|++|++||+.........          .
T Consensus       148 dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~----------~  217 (422)
T KOG0264|consen  148 DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV----------V  217 (422)
T ss_pred             CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc----------c
Confidence            67888876543322    1223337889998888899999443 7889999999999999865432110          1


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC--CeeeEEEeccCccccccceeeEEECCCCCE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTK  187 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (279)
                      ....+...|...|.+++|+|.      +...|++++.|+.+.|||+|+  .++......|..     .|.|++|+|-+.+
T Consensus       218 ~p~~~~~~h~~~VeDV~~h~~------h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~-----~vn~~~fnp~~~~  286 (422)
T KOG0264|consen  218 DPKTIFSGHEDVVEDVAWHPL------HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA-----EVNCVAFNPFNEF  286 (422)
T ss_pred             cceEEeecCCcceehhhcccc------chhhheeecCCCeEEEEEcCCCCCCCcccccccCC-----ceeEEEeCCCCCc
Confidence            122356678889999999876      556899999999999999994  455555556655     9999999997655


Q ss_pred             EE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC----------
Q 023672          188 IF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----------  255 (279)
Q Consensus       188 l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~----------  255 (279)
                      ++ +| .|++|++||+|+-..   .+..+    .+|...|.++.|+|....+|++++.|+.+.+||+..-          
T Consensus       287 ilAT~S~D~tV~LwDlRnL~~---~lh~~----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  287 ILATGSADKTVALWDLRNLNK---PLHTF----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             eEEeccCCCcEEEeechhccc---Cceec----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            54 66 899999999997533   22333    7999999999999988899999999999999998531          


Q ss_pred             ----eEEEEEeecCCCEEEEEEccCC
Q 023672          256 ----ELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       256 ----~~~~~~~~~~~~v~~~~~spdg  277 (279)
                          +++..-.||...|..+.|+|+-
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNE  385 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCC
Confidence                3456667899999999999975

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.1e-26  Score=184.85  Aligned_cols=198  Identities=18%  Similarity=0.337  Sum_probs=146.5

Q ss_pred             ccC-CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc-------------------------cc--c--------
Q 023672           55 TSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-------------------------YD--V--------   98 (279)
Q Consensus        55 ~~~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-------------------------~~--~--------   98 (279)
                      .+. +|.++|++|.|++||+|||+|+.||.|+||.+.+....                         ..  .        
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            455 99999999999999999999999999999998761110                         00  0        


Q ss_pred             ----ccccccC----CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc
Q 023672           99 ----NACSLAK----DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV  170 (279)
Q Consensus        99 ----~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~  170 (279)
                          ..+...+    .-.........+|...|.++.|+        ..++|++++.|.+|+||++...++++.|....  
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd--  410 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--------KNNFLLSSSMDKTVRLWHPGRKECLKVFSHND--  410 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccc--------cCCeeEeccccccEEeecCCCcceeeEEecCC--
Confidence                0000000    00000111233566788888883        34589999999999999999999999998655  


Q ss_pred             ccccceeeEEECCC-CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEE
Q 023672          171 DEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA  248 (279)
Q Consensus       171 ~~~~~v~~~~~~~~-~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~  248 (279)
                          .|+|++|+|. .+++++| -|+.||||++...  .....       ..-..-|++++|.| +|+..+.|+.+|.++
T Consensus       411 ----fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W-------~Dl~~lITAvcy~P-dGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  411 ----FVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDW-------NDLRDLITAVCYSP-DGKGAVIGTFNGYCR  476 (712)
T ss_pred             ----eeEEEEecccCCCcEeecccccceEEeecCcC--eeEee-------hhhhhhheeEEecc-CCceEEEEEeccEEE
Confidence                9999999995 5788887 9999999999862  22222       12246799999999 899999999999999


Q ss_pred             EEecCCCeEEEEEee--c------CCCEEEEEEccC
Q 023672          249 IYREDNMELLYVLHG--Q------EGGVTHVSKLSS  276 (279)
Q Consensus       249 ~wd~~~~~~~~~~~~--~------~~~v~~~~~spd  276 (279)
                      +|+....+......-  |      ...|+++.|.|.
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~  512 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG  512 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence            999988876654432  2      126999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=4.8e-25  Score=170.14  Aligned_cols=200  Identities=24%  Similarity=0.385  Sum_probs=161.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+|+....+...      .+.+|...|.++.|+++++++++++.||.|.+||+.+++...                 .
T Consensus        74 ~i~i~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------~  130 (289)
T cd00200          74 TIRLWDLETGECVR------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-----------------T  130 (289)
T ss_pred             eEEEEEcCcccceE------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-----------------E
Confidence            56677777654433      456788899999999998889888889999999998543211                 1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...+.++.|       +|++.++++++.++.|++||+++++....+..+..     .+.++.|+|+++.++++ .+
T Consensus       131 ~~~~~~~i~~~~~-------~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         131 LRGHTDWVNSVAF-------SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-----EVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             eccCCCcEEEEEE-------cCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-----ccceEEECCCcCEEEEecCC
Confidence            1134557888877       56678888888899999999998888888876654     78999999999877755 89


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.+++||++..    .....+    ..|...+.+++|+| ++.++++++.||.|++||+.+++++..+..|...|.+++|
T Consensus       199 ~~i~i~d~~~~----~~~~~~----~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~  269 (289)
T cd00200         199 GTIKLWDLSTG----KCLGTL----RGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW  269 (289)
T ss_pred             CcEEEEECCCC----ceecch----hhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence            99999999873    222222    46777999999999 7888888888999999999999999999999999999999


Q ss_pred             ccCCC
Q 023672          274 LSSAY  278 (279)
Q Consensus       274 spdg~  278 (279)
                      +|+|+
T Consensus       270 ~~~~~  274 (289)
T cd00200         270 SPDGK  274 (289)
T ss_pred             CCCCC
Confidence            99875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=3e-25  Score=193.14  Aligned_cols=204  Identities=13%  Similarity=0.174  Sum_probs=155.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+++.+.      .+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++....                 
T Consensus       556 ~v~lWd~~~~~~~~------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~-----------------  612 (793)
T PLN00181        556 VVQVWDVARSQLVT------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG-----------------  612 (793)
T ss_pred             eEEEEECCCCeEEE------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE-----------------
Confidence            56788888766544      6778999999999997 78999999999999999998653311                 


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCEEEE-e
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~  191 (279)
                       .......+.++.|.      ++++.+|++|+.|+.|++||+++.+ ....+..|..     .|.++.|. ++..+++ +
T Consensus       613 -~~~~~~~v~~v~~~------~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-----~V~~v~f~-~~~~lvs~s  679 (793)
T PLN00181        613 -TIKTKANICCVQFP------SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-----TVSYVRFV-DSSTLVSSS  679 (793)
T ss_pred             -EEecCCCeEEEEEe------CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-----CEEEEEEe-CCCEEEEEE
Confidence             11223467777763      3478899999999999999998765 4556666655     89999997 5666765 4


Q ss_pred             cCCeEEEEEccCCCC--ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE--------
Q 023672          192 YNKSVRVFDVHRPGR--DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--------  261 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--------  261 (279)
                      .|+.|++||++.+..  ....+..+    .+|...+.+++|+| ++.+|++|+.|+.|++|+.....++..+        
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~  754 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV  754 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence            999999999985311  11222333    68889999999999 8899999999999999998766443222        


Q ss_pred             -----eecCCCEEEEEEccCCCC
Q 023672          262 -----HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       262 -----~~~~~~v~~~~~spdg~~  279 (279)
                           ..+...|.+++|+|+|.+
T Consensus       755 ~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        755 SGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             cccccCCCCcEEEEEEEcCCCCe
Confidence                 234457999999999863

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=1.4e-27  Score=175.67  Aligned_cols=196  Identities=15%  Similarity=0.221  Sum_probs=160.5

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      ++..-.+++||+.+++++.      ++.+|..+|..+.|+.  .+++|+|.|.++.+||+.....              .
T Consensus       253 GSSDsTvrvWDv~tge~l~------tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~--------------i  310 (499)
T KOG0281|consen  253 GSSDSTVRVWDVNTGEPLN------TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD--------------I  310 (499)
T ss_pred             cCCCceEEEEeccCCchhh------HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH--------------H
Confidence            3344468899999999987      8899999999999984  5899999999999999985421              1


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                      ....+..+|...|..+.|         +.+++++++.|.+|++|++.+++.++++.+|..     .|-|+.+  .+++++
T Consensus       311 t~rrVLvGHrAaVNvVdf---------d~kyIVsASgDRTikvW~~st~efvRtl~gHkR-----GIAClQY--r~rlvV  374 (499)
T KOG0281|consen  311 TLRRVLVGHRAAVNVVDF---------DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-----GIACLQY--RDRLVV  374 (499)
T ss_pred             HHHHHHhhhhhheeeecc---------ccceEEEecCCceEEEEeccceeeehhhhcccc-----cceehhc--cCeEEE
Confidence            122245677788999887         677999999999999999999999999998886     7777665  578888


Q ss_pred             Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe---------EEE
Q 023672          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---------LLY  259 (279)
Q Consensus       190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~---------~~~  259 (279)
                      +| .|.+|++||+..+    .++..+    +||..-|.++.|..   ..+++|+.||+|++||+.++.         ++.
T Consensus       375 SGSSDntIRlwdi~~G----~cLRvL----eGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~  443 (499)
T KOG0281|consen  375 SGSSDNTIRLWDIECG----ACLRVL----EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR  443 (499)
T ss_pred             ecCCCceEEEEecccc----HHHHHH----hchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHH
Confidence            87 9999999999985    444444    89999999999954   689999999999999997653         455


Q ss_pred             EEeecCCCEEEEEEc
Q 023672          260 VLHGQEGGVTHVSKL  274 (279)
Q Consensus       260 ~~~~~~~~v~~~~~s  274 (279)
                      ++..|++.|..+.|.
T Consensus       444 ~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  444 TLVEHSGRVFRLQFD  458 (499)
T ss_pred             hhhhccceeEEEeec
Confidence            666788888887774

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.2e-25  Score=180.26  Aligned_cols=184  Identities=16%  Similarity=0.320  Sum_probs=154.7

Q ss_pred             CCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      --...|..++|+..|.+||.|+. -|.+.||++....+.-                 ...+|...+.++.+       +|
T Consensus       305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-----------------KQQgH~~~i~~l~Y-------Sp  360 (893)
T KOG0291|consen  305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-----------------KQQGHSDRITSLAY-------SP  360 (893)
T ss_pred             cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-----------------eccccccceeeEEE-------CC
Confidence            34567999999999999998775 4899999998653311                 22346668888887       88


Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      ||+++|+|+.||+|++||..++-+..++..|..     .|+.+.|+..++.++++ .||+|+.||+.. .   ..+.++.
T Consensus       361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-Y---rNfRTft  431 (893)
T KOG0291|consen  361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLDGTVRAWDLKR-Y---RNFRTFT  431 (893)
T ss_pred             CCcEEEeccCCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecCCeEEeeeecc-c---ceeeeec
Confidence            999999999999999999999999999999987     99999999999999965 999999999987 3   3333442


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCc-EEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .   .......|++..| .|.++++|+.|.. |.+|++.+|+++..+.+|++||.+++|+|+|.
T Consensus       432 ~---P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  432 S---PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS  491 (893)
T ss_pred             C---CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence            1   2234577899999 8999999998875 99999999999999999999999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=2.4e-25  Score=193.78  Aligned_cols=190  Identities=17%  Similarity=0.269  Sum_probs=148.2

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      +.+|.+.|.+++|+|++++||+|+.|++|+||++.........          .........+...+.+++|+|.     
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~----------~~~~~~~~~~~~~v~~l~~~~~-----  543 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD----------IHYPVVELASRSKLSGICWNSY-----  543 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc----------cccceEEecccCceeeEEeccC-----
Confidence            4569999999999999999999999999999998642110000          0001122233457888888542     


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                       ++.+|++++.|++|++||+.+++.+..+..|..     .|++++|+| ++.+|++| .|+.|++||++++    .....
T Consensus       544 -~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~~~~~  613 (793)
T PLN00181        544 -IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSIGT  613 (793)
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----cEEEE
Confidence             467899999999999999999998888887776     899999997 67888866 9999999999873    22223


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCCCEEEEEEcc
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~sp  275 (279)
                      +    .. ...+.++.|++.++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|.+
T Consensus       614 ~----~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~  671 (793)
T PLN00181        614 I----KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD  671 (793)
T ss_pred             E----ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC
Confidence            3    22 34689999966479999999999999999998876 5678889999999999974

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.5e-26  Score=187.23  Aligned_cols=206  Identities=14%  Similarity=0.230  Sum_probs=169.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+..||..=+.+++      .+..|.++|.+++|+|.+.++++|+.|-.|+||+..+.++..                 .
T Consensus        32 ~IQlWDYRM~tli~------rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-----------------t   88 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLID------RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-----------------T   88 (1202)
T ss_pred             eeeeehhhhhhHHh------hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh-----------------h
Confidence            45667776666666      788899999999999999999999999999999998765422                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ..+|-.-|..+.|       ++.-.+|+|+|.|.+|+||+..+++++..+.+|.+     .|.|..|+|....++++ .|
T Consensus        89 L~GHlDYVRt~~F-------HheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-----YVMcAqFhptEDlIVSaSLD  156 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFF-------HHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-----YVMCAQFHPTEDLIVSASLD  156 (1202)
T ss_pred             hccccceeEEeec-------cCCCceEEEccCCCeEEEEeccCCceEEEEecCce-----EEEeeccCCccceEEEeccc
Confidence            3455566777766       45566999999999999999999999999999998     99999999999999965 99


Q ss_pred             CeEEEEEccCCC----Cce-----------------eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          194 KSVRVFDVHRPG----RDF-----------------EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       194 ~~i~~~d~~~~~----~~~-----------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .+|||||+..-.    .+.                 ..-..++....||...|+-++|+| .-.++++|+.|..|++|.+
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrm  235 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRM  235 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEe
Confidence            999999986310    000                 001233445589999999999999 8889999999999999999


Q ss_pred             CCCe--EEEEEeecCCCEEEEEEccC
Q 023672          253 DNME--LLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       253 ~~~~--~~~~~~~~~~~v~~~~~spd  276 (279)
                      ...+  .+.+..+|.++|.++-|+|.
T Consensus       236 netKaWEvDtcrgH~nnVssvlfhp~  261 (1202)
T KOG0292|consen  236 NETKAWEVDTCRGHYNNVSSVLFHPH  261 (1202)
T ss_pred             ccccceeehhhhcccCCcceEEecCc
Confidence            7655  46788999999999999994

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=7.9e-25  Score=177.94  Aligned_cols=208  Identities=10%  Similarity=0.198  Sum_probs=153.3

Q ss_pred             eeeeEecCCCCcccc-eeeeeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           34 WPLIRFDVPPHRTYH-FYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      -.+.+||+.+..... .......+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++....               
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---------------  162 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---------------  162 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---------------
Confidence            367789887653211 112334678999999999999975 689999999999999998653211               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-E
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A  190 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~  190 (279)
                        ....|...|.+++|       +|++.+|++++.|++|++||+++++.+..+..|...    .+..+.|.+++..++ +
T Consensus       163 --~l~~h~~~V~sla~-------spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        163 --VIKCHSDQITSLEW-------NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLIITL  229 (493)
T ss_pred             --EEcCCCCceEEEEE-------ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeEEEE
Confidence              22345678999988       668899999999999999999999988888766531    234678888877776 4


Q ss_pred             e----cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCeEEEEEee-c
Q 023672          191 G----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHG-Q  264 (279)
Q Consensus       191 ~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~-~  264 (279)
                      |    .|+.|++||+++...+.... .     ..+...+....|++ ++.+|++|+ .|+.|++||+.+++++..... +
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~-~-----~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s  302 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTV-D-----LDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS  302 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEe-c-----cCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC
Confidence            4    37899999998743332211 1     12234566678899 788888776 599999999999988776654 4


Q ss_pred             CCCEEEEEEccC
Q 023672          265 EGGVTHVSKLSS  276 (279)
Q Consensus       265 ~~~v~~~~~spd  276 (279)
                      ..++.+++|.|.
T Consensus       303 ~~~~~g~~~~pk  314 (493)
T PTZ00421        303 VEPHKGLCMMPK  314 (493)
T ss_pred             CCCCcceEeccc
Confidence            457888888874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=4e-26  Score=182.91  Aligned_cols=193  Identities=16%  Similarity=0.206  Sum_probs=162.0

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec------CCCceEEEEee
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT------EGESVYDFCWF  128 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~  128 (279)
                      +..+|.+.|+.++.+||++.++|||.|.+|++||..--...           .......+...      -...|.++.+ 
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-----------~gt~~k~lsl~~~rtLel~ddvL~v~~-  516 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-----------PGTQKKVLSLKHTRTLELEDDVLCVSV-  516 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-----------CcccceeeeeccceEEeccccEEEEEE-
Confidence            67799999999999999999999999999999998521110           00000012222      2235666654 


Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCc
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~  207 (279)
                            |||+++|+.+--|.+|++|-+++-+....+.+|.-     +|.||.++||++.+++| .|..|++|-+.-+   
T Consensus       517 ------Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-----PV~smDIS~DSklivTgSADKnVKiWGLdFG---  582 (888)
T KOG0306|consen  517 ------SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-----PVLSMDISPDSKLIVTGSADKNVKIWGLDFG---  582 (888)
T ss_pred             ------cCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-----ceeEEeccCCcCeEEeccCCCceEEeccccc---
Confidence                  88999999999999999999999999889988887     99999999999999976 9999999999874   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       .+...+    -+|.+.|.++.|-| ...++.+++.|+.|+-||-...+++.++.+|...|++++.+|+|.|
T Consensus       583 -DCHKS~----fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~  648 (888)
T KOG0306|consen  583 -DCHKSF----FAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF  648 (888)
T ss_pred             -hhhhhh----hcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence             333333    69999999999999 8999999999999999999999999999999999999999999965

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-25  Score=163.56  Aligned_cols=208  Identities=17%  Similarity=0.202  Sum_probs=135.9

Q ss_pred             eEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc---------cccccccCCC
Q 023672           37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD---------VNACSLAKDQ  107 (279)
Q Consensus        37 ~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~  107 (279)
                      ..|+.......|.+. ...+++|.+.|++|+|+.||++|+|++.|++|+||+++.......         .....+....
T Consensus        64 ~~~k~~q~~f~Hpl~-~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   64 DQWKAKQPTFVHPLN-VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhcccCCCcccchh-hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            344544444444332 237899999999999999999999999999999999975422100         0000000111


Q ss_pred             CcccceeeecCCCceEE---------------EEeeC-----------cccccCCCCcEEEEecCCCcEEEEECCCCeee
Q 023672          108 DSYEASLVVTEGESVYD---------------FCWFP-----------HMSASDPTSCVFASTTRDHPIHLWDATTGLLR  161 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~---------------~~~~~-----------~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~  161 (279)
                      +-....+..+.++.++.               +.|..           ..+-+..++.+|++++.|..|.+|+++ |+.+
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence            11111111111111111               11100           011234567899999999999999998 8888


Q ss_pred             EEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCC-CceeeeeecccccCCCCCceEEEEEccCCCcEEE
Q 023672          162 CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA  239 (279)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~  239 (279)
                      ..+.....     .-+..+.+|+|+++++ |....|++|.+--.. ..++.... ...+++|...|..++|+| +...++
T Consensus       222 ~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r-vf~LkGH~saV~~~aFsn-~S~r~v  294 (420)
T KOG2096|consen  222 QSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR-VFSLKGHQSAVLAAAFSN-SSTRAV  294 (420)
T ss_pred             eeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh-hheeccchhheeeeeeCC-CcceeE
Confidence            88776554     4567899999999995 588899999874311 11111111 112379999999999999 999999


Q ss_pred             EEeCCCcEEEEecC
Q 023672          240 IGSYSQTSAIYRED  253 (279)
Q Consensus       240 ~~~~dg~i~~wd~~  253 (279)
                      +.+.||+++|||..
T Consensus       295 tvSkDG~wriwdtd  308 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTD  308 (420)
T ss_pred             EEecCCcEEEeecc
Confidence            99999999999963

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.2e-26  Score=181.79  Aligned_cols=204  Identities=21%  Similarity=0.246  Sum_probs=160.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++++.++..+.       .+.||++.|.++....+|-+|+||+.|.++++|.++++....             .....
T Consensus       347 ~lr~y~~~~~~c~-------ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~-------------~~~a~  406 (775)
T KOG0319|consen  347 ELRLYTLPTSYCQ-------IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS-------------LCVAQ  406 (775)
T ss_pred             ceEEEecCCCceE-------EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh-------------hhhhh
Confidence            3455566655553       788999999999966678899999999999999995443211             11113


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE---------EEeccCccccccceeeEEECCCC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC---------TYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                      ...|.+.|..++.+-.      ...+|+++|.|.++++|++...+...         ....|+.     .|++++++|+.
T Consensus       407 ~~gH~~svgava~~~~------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-----dIN~Vaia~nd  475 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKL------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-----DINCVAIAPND  475 (775)
T ss_pred             hcccccccceeeeccc------CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc-----cccceEecCCC
Confidence            3567778888876322      23489999999999999998632211         1223443     89999999999


Q ss_pred             CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      +++++| .|.+.++|++...    .    +...+.+|...|.++.|+| ..+.++|+|.|++|+||.+.+..|+.++.+|
T Consensus       476 kLiAT~SqDktaKiW~le~~----~----l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH  546 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQL----R----LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGH  546 (775)
T ss_pred             ceEEecccccceeeecccCc----e----EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCc
Confidence            999976 9999999999852    3    3333489999999999999 8999999999999999999999999999999


Q ss_pred             CCCEEEEEEccCCC
Q 023672          265 EGGVTHVSKLSSAY  278 (279)
Q Consensus       265 ~~~v~~~~~spdg~  278 (279)
                      ...|..+.|-.+|+
T Consensus       547 ~~aVlra~F~~~~~  560 (775)
T KOG0319|consen  547 TSAVLRASFIRNGK  560 (775)
T ss_pred             cceeEeeeeeeCCc
Confidence            99999999988775

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.6e-26  Score=182.73  Aligned_cols=195  Identities=18%  Similarity=0.247  Sum_probs=156.4

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      .++..+.||.+.|..+.|+.++ +|+++|.|.+|+||++....+                  ...+.|..-|++++|+|.
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C------------------L~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC------------------LKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce------------------eeEEecCCeeEEEEeccc
Confidence            3455899999999999999765 899999999999999986543                  245788899999999886


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                            |.++|++|+.|+.|+||++...+.+.-...+.      -|++++|.|+|+..++| .+|.+++|+.+..  .+.
T Consensus       421 ------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~------lITAvcy~PdGk~avIGt~~G~C~fY~t~~l--k~~  486 (712)
T KOG0283|consen  421 ------DDRYFISGSLDGKVRLWSISDKKVVDWNDLRD------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGL--KLV  486 (712)
T ss_pred             ------CCCcEeecccccceEEeecCcCeeEeehhhhh------hheeEEeccCCceEEEEEeccEEEEEEccCC--eEE
Confidence                  88999999999999999999888776666554      89999999999999988 9999999999862  121


Q ss_pred             eeeec--c-cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC--CEEEEEEccCCCC
Q 023672          210 KYSTL--K-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--GVTHVSKLSSAYT  279 (279)
Q Consensus       210 ~~~~~--~-~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~spdg~~  279 (279)
                      .-..+  . .....|. .|+.+.|.|.+...+++.+.|..|+|+|.++.+++..|+++..  .-....|+.||+|
T Consensus       487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~  560 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH  560 (712)
T ss_pred             EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE
Confidence            11111  1 1112333 8999999995555677778899999999999999999987542  4467889999986

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-24  Score=157.91  Aligned_cols=191  Identities=23%  Similarity=0.304  Sum_probs=145.5

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ..+.+.||...|++++.+|-+..+++++.|++|++||++..+...                 +....+.++         
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-----------------~l~~~~~pi---------  145 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-----------------LLNLSGRPI---------  145 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce-----------------EEecCCCcc---------
Confidence            344899999999999999988999999999999999998543311                 111112222         


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~  208 (279)
                      .|++|.|-++|++.....|++||++.-  .+-.++....  ........|.|+|+|++++.+ ..+.+++.|--++ .  
T Consensus       146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~--  220 (311)
T KOG1446|consen  146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-T--  220 (311)
T ss_pred             eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-c--
Confidence            366999999999998889999999863  3444554432  111267899999999999966 8899999999884 2  


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccC
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSS  276 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spd  276 (279)
                       ....+...... ..-..+.+|+| +++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|-
T Consensus       221 -~~~tfs~~~~~-~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  221 -VKSTFSGYPNA-GNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR  286 (311)
T ss_pred             -EeeeEeeccCC-CCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence             22233211111 11226789999 999999999999999999999999999998 6889999999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.5e-25  Score=180.05  Aligned_cols=207  Identities=14%  Similarity=0.246  Sum_probs=169.9

Q ss_pred             ccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672           29 QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD  108 (279)
Q Consensus        29 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  108 (279)
                      .+...+.+.+|+..+.+++.      ++.||-+.|..+.|++.-.+++++|.|.+|+||++.+..+.             
T Consensus        68 SGGDDykIkVWnYk~rrclf------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-------------  128 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-------------  128 (1202)
T ss_pred             ecCCccEEEEEecccceehh------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-------------
Confidence            34556688999999998877      89999999999999999999999999999999999876442             


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee----------------------------
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL----------------------------  160 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~----------------------------  160 (279)
                          .+..+|..-|.+..|       +|....++|+|-|.+|++||+..-+.                            
T Consensus       129 ----avltGHnHYVMcAqF-------hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  129 ----AVLTGHNHYVMCAQF-------HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             ----EEEecCceEEEeecc-------CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence                145677778888776       56677999999999999999963211                            


Q ss_pred             -eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE
Q 023672          161 -RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML  238 (279)
Q Consensus       161 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l  238 (279)
                       ...+.     +|.+.|+.++|+|.-.++++| .|..|++|.+.. .+.++ .-+.    .+|.+.|.++-|+| ...++
T Consensus       198 VK~VLE-----GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWE-vDtc----rgH~nnVssvlfhp-~q~lI  265 (1202)
T KOG0292|consen  198 VKHVLE-----GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWE-VDTC----RGHYNNVSSVLFHP-HQDLI  265 (1202)
T ss_pred             eeeeec-----ccccccceEEecCCcceEEecCCcceeeEEEecc-cccee-ehhh----hcccCCcceEEecC-cccee
Confidence             11122     344589999999999999987 899999999986 22222 2233    69999999999999 99999


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       239 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++.++|++|+|||+.....+.+++.-.+.-+.++-+|..
T Consensus       266 lSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  266 LSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             EecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence            999999999999999999999998767788888888865

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=4e-24  Score=174.91  Aligned_cols=213  Identities=9%  Similarity=0.198  Sum_probs=148.7

Q ss_pred             eeeeeEecCCCCcc-cc-eeeeeeccCCCCCceEEEEEccCCCe-EEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           33 TWPLIRFDVPPHRT-YH-FYNQFRTSSIPNNFLKGIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        33 ~~~~~~~d~~~~~~-~~-~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .-.+++||+.+... .. .......+.+|.+.|.+++|+|++.. |++++.|++|+|||+.++...              
T Consensus        96 DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------  161 (568)
T PTZ00420         96 DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------  161 (568)
T ss_pred             CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------
Confidence            34678899876432 11 11122357789999999999998875 578999999999999875421              


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                          ....+...|.++.|       +|+|.+|++++.|+.|++||+++++.+..+..|........+....|++++.+++
T Consensus       162 ----~~i~~~~~V~Slsw-------spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il  230 (568)
T PTZ00420        162 ----FQINMPKKLSSLKW-------NIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL  230 (568)
T ss_pred             ----EEEecCCcEEEEEE-------CCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence                11223457888877       7789999999999999999999999988888776422222334445678888888


Q ss_pred             E-ecC----CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-
Q 023672          190 A-GYN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-  263 (279)
Q Consensus       190 ~-~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-  263 (279)
                      + |.|    +.|+|||++....+.... .+    ..+.+.+.. .|.++++.++++|+.|+.|++|++..+.. ..+.. 
T Consensus       231 TtG~d~~~~R~VkLWDlr~~~~pl~~~-~l----d~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~  303 (568)
T PTZ00420        231 STGFSKNNMREMKLWDLKNTTSALVTM-SI----DNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEY  303 (568)
T ss_pred             EEEcCCCCccEEEEEECCCCCCceEEE-Ee----cCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcE-Eeeccc
Confidence            4 555    479999999644433222 11    233333333 34453789999999999999999987753 22322 


Q ss_pred             -cCCCEEEEEEccCC
Q 023672          264 -QEGGVTHVSKLSSA  277 (279)
Q Consensus       264 -~~~~v~~~~~spdg  277 (279)
                       +..++.+++|.|.-
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence             55688999999963

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=2.2e-24  Score=166.57  Aligned_cols=208  Identities=14%  Similarity=0.280  Sum_probs=151.0

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc-c-ccc-----------------cccccCCCCcccceee
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-Y-DVN-----------------ACSLAKDQDSYEASLV  115 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~-~~~-----------------~~~~~~~~~~~~~~~~  115 (279)
                      ....|...++-..|+|.|-++|+|...|+|+|||....... . +..                 ......+..++...+.
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            67789999999999999999999999999999998753221 0 000                 0000001111111111


Q ss_pred             ----------ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672          116 ----------VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       116 ----------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                                .+|...|.++.+-|.      ..-.+++|+.|++|.+|+-.--+...++..|..     .|+++.|+|||
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~Kps------RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-----FV~~VRysPDG  202 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPS------RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK-----FVNCVRYSPDG  202 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCC------CceEEEeccCCCeEEEeeCCCeeeeeccccccc-----ceeeEEECCCC
Confidence                      123334555554433      123699999999999999766666666776665     99999999999


Q ss_pred             CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE----
Q 023672          186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----  260 (279)
Q Consensus       186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~----  260 (279)
                      .+++ +|.||.+.+||-.++    +....+.. ..+|.+.|.++.|+| ++..+++++.|.+++|||+.+.+++.+    
T Consensus       203 ~~Fat~gsDgki~iyDGktg----e~vg~l~~-~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTG----EKVGELED-SDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             CeEEEecCCccEEEEcCCCc----cEEEEecC-CCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecC
Confidence            9999 569999999999985    23333322 269999999999999 999999999999999999877654333    


Q ss_pred             ---------------------------------------EeecCCCEEEEEEccCCCC
Q 023672          261 ---------------------------------------LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       261 ---------------------------------------~~~~~~~v~~~~~spdg~~  279 (279)
                                                             +.+|...|++++.+|||+|
T Consensus       277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence                                                   4678888999999998864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=4.1e-25  Score=159.38  Aligned_cols=203  Identities=20%  Similarity=0.268  Sum_probs=152.8

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ....|.+.|+++...+ .|+++++|+.||.|.+||+++........ .. .....-........|.-.|.++.|.|.   
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~-li-~k~~c~v~~~h~~~Hky~iss~~WyP~---  112 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG-LI-AKHKCIVAKQHENGHKYAISSAIWYPI---  112 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc-ce-eheeeeccccCCccceeeeeeeEEeee---
Confidence            3456899999999988 89999999999999999998643111000 00 000000001122345567889999886   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC---CEEEEe-cCCeEEEEEccCCCCcee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                         |...+.+++.|.++++||.++.+....++..+      .|++-+++|-.   -++++| .+-.|++-|+..+    .
T Consensus       113 ---DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s  179 (397)
T KOG4283|consen  113 ---DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----S  179 (397)
T ss_pred             ---cCceeecccccceEEEeecccceeeEEeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC----c
Confidence               67799999999999999999999998888877      88999999853   355577 8899999999985    2


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEE--------------eecCCCEEEEEEc
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVL--------------HGQEGGVTHVSKL  274 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~--------------~~~~~~v~~~~~s  274 (279)
                      ....+    .+|.+.|.++.|+|...-.|++|+.||.|++||++.. .+...+              ..|.+.|.+++|+
T Consensus       180 ~sH~L----sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  180 FSHTL----SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             ceeee----ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            22333    8999999999999966667889999999999999754 333333              3466789999999


Q ss_pred             cCCCC
Q 023672          275 SSAYT  279 (279)
Q Consensus       275 pdg~~  279 (279)
                      .||+|
T Consensus       256 Sd~~~  260 (397)
T KOG4283|consen  256 SDARY  260 (397)
T ss_pred             ccchh
Confidence            99975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=1.1e-24  Score=154.93  Aligned_cols=190  Identities=18%  Similarity=0.217  Sum_probs=157.6

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.||..+++.+.++.+|.+|.+++.|.+..||-..+++...                 ...+|.+.|+++..       
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-----------------ty~GHtGavW~~Di-------   60 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-----------------TYDGHTGAVWCCDI-------   60 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-----------------eecCCCceEEEEEe-------
Confidence            578999999999999999999999999999999886654322                 34567789998854       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe------cCCeEEEEEccCCCCce
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~~~d~~~~~~~~  208 (279)
                      +.+...+++|+.|.++++||+.+|+.+..++...      +|..+.|+++|++++.+      ..+.|.++|++......
T Consensus        61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             cCCcceeeeccccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence            6678899999999999999999999999998876      89999999999988854      34679999998532111


Q ss_pred             ---eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCCCEEEEEEccCCCC
Q 023672          209 ---EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       209 ---~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                         ++...+    ..+...++.+-|+| -+..|++|.+||.|..||+++|. .+.....|...|++|.++||..|
T Consensus       135 ~s~ep~~kI----~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~  204 (327)
T KOG0643|consen  135 DSEEPYLKI----PTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY  204 (327)
T ss_pred             cccCceEEe----cCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence               112222    34567899999999 89999999999999999999985 45666789999999999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=160.11  Aligned_cols=171  Identities=12%  Similarity=0.156  Sum_probs=148.3

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ++..|++.|.+++.+|+.++++||+.|..-.||++.++...                 .....|+..|.++.|       
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~F-------  114 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSF-------  114 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEE-------
Confidence            78899999999999999999999999999999999987532                 134678889999987       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +.+|.+||+|+.+|.|+||+..++.....+...-.     .+.-+.|+|.+..|++| .||.+.+|.+...    .....
T Consensus       115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-----dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv  185 (399)
T KOG0296|consen  115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-----DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKV  185 (399)
T ss_pred             ccCceEEEecCCCccEEEEEcccCceEEEeecccC-----ceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeE
Confidence            78999999999999999999999988888763332     67789999999999988 9999999999873    11222


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      +    .+|..++++=.|.| +|..++++..||+|++||+.+++++..+.+
T Consensus       186 ~----~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~  230 (399)
T KOG0296|consen  186 M----SGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQ  230 (399)
T ss_pred             e----cCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecc
Confidence            3    79999999999999 899999999999999999999999988874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-24  Score=172.09  Aligned_cols=199  Identities=19%  Similarity=0.329  Sum_probs=161.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|+..++.....      ..-+.+.|+++.|+++|++|++|..+|.|.|||..+.....                .+
T Consensus       198 ~vylW~~~s~~v~~l------~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----------------~~  255 (484)
T KOG0305|consen  198 SVYLWSASSGSVTEL------CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----------------TL  255 (484)
T ss_pred             eEEEEecCCCceEEe------EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc----------------cc
Confidence            578888888875442      22237889999999999999999999999999998653322                13


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEE-EeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      ..+|...|-+++|         ++..+.+|+.|+.|..+|++..+.... +..|..     .|+.+.|++++.++++| .
T Consensus       256 ~~~h~~rvg~laW---------~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgn  321 (484)
T KOG0305|consen  256 RGSHASRVGSLAW---------NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGN  321 (484)
T ss_pred             cCCcCceeEEEec---------cCceEEEecCCCcEEEEEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCC
Confidence            3447788999999         466899999999999999998776555 666665     89999999999999977 9


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe--CCCcEEEEecCCCeEEEEEeecCCCEEE
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTH  270 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~  270 (279)
                      |+.+.|||....    .....+    ..|..+|.+++|+|-...+||+|+  .|+.|++||..+++.+..+. -...|.+
T Consensus       322 DN~~~Iwd~~~~----~p~~~~----~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcs  392 (484)
T KOG0305|consen  322 DNVVFIWDGLSP----EPKFTF----TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCS  392 (484)
T ss_pred             ccceEeccCCCc----cccEEE----eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceee
Confidence            999999999653    222223    689999999999998888999875  69999999999999998877 4567999


Q ss_pred             EEEccCCC
Q 023672          271 VSKLSSAY  278 (279)
Q Consensus       271 ~~~spdg~  278 (279)
                      |.|++..+
T Consensus       393 L~Wsk~~k  400 (484)
T KOG0305|consen  393 LIWSKKYK  400 (484)
T ss_pred             EEEcCCCC
Confidence            99998753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.5e-26  Score=182.45  Aligned_cols=186  Identities=17%  Similarity=0.288  Sum_probs=159.7

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|...|.++.|+++..+|++|+.+|+|++||+++.....                 ...+|...+..+.|       
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-----------------tLtgh~~~~~sv~f-------  120 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-----------------TLTGHLLNITSVDF-------  120 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh-----------------hhhccccCcceeee-------
Confidence            578999999999999999999999999999999999754322                 12334446666666       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +|-+.++++|+.|..+++||++...+...+..|..     .+..+.|+|+|++++.+ .|..++|||+..+    +    
T Consensus       121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k----  187 (825)
T KOG0267|consen  121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----K----  187 (825)
T ss_pred             ccceEEeccccccccceehhhhccCceeeecCCcc-----eeEEEeecCCCceeeccCCcceeeeeccccc----c----
Confidence            66788999999999999999998888888887664     78899999999999976 8899999999884    2    


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +...+..|...+.++.|+| ..-++++|+.|+++++||+++.+.+........+|.+++|+|||+
T Consensus       188 ~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~  251 (825)
T KOG0267|consen  188 LSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK  251 (825)
T ss_pred             cccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence            2333378999999999999 889999999999999999999999988888888999999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.4e-24  Score=156.92  Aligned_cols=195  Identities=19%  Similarity=0.302  Sum_probs=150.1

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ......+.|.+++||| ...+++.+|.||+|++|+++....               ........+.++|.+++|      
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---------------~~~ka~~~~~~PvL~v~W------   80 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---------------LVPKAQQSHDGPVLDVCW------   80 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCc---------------ccchhhhccCCCeEEEEE------
Confidence            5667789999999999 555677999999999999986311               111244567789999999      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC--EEEEe-cCCeEEEEEccCCCCceee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                       +.+|..+++|+.|+.+++||+.+++ ...+..|..     +|..+.|-+...  .|++| -|.+|+.||.|... +...
T Consensus        81 -sddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t  152 (347)
T KOG0647|consen   81 -SDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDA-----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVAT  152 (347)
T ss_pred             -ccCCceEEeeccCCceEEEEccCCC-eeeeeeccc-----ceeEEEEecCCCcceeEecccccceeecccCCCC-eeee
Confidence             7789999999999999999999995 455666665     899999987654  67777 99999999999631 1100


Q ss_pred             ---------------------------------------------------e--------------------eeccc---
Q 023672          211 ---------------------------------------------------Y--------------------STLKG---  216 (279)
Q Consensus       211 ---------------------------------------------------~--------------------~~~~~---  216 (279)
                                                                         +                    ..+..   
T Consensus       153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence                                                               0                    00000   


Q ss_pred             ----ccCCC---------CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          217 ----NKEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       217 ----~~~~~---------~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                          .+.-|         -.+|++++|+| .-..|++++.||++.+||-.....+.+.+.|..+|++.+|+.+|.+
T Consensus       233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             cCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence                01112         23678899999 7778999999999999999888888888889999999999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.4e-24  Score=180.38  Aligned_cols=209  Identities=21%  Similarity=0.385  Sum_probs=159.7

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc---cCCCCcc-cceeeecCCCceEEEEeeCc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL---AKDQDSY-EASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~v~~~~~~~~  130 (279)
                      +...|.+.|+|+.|+|||++||+||+|+.|.||+......   ...+..   ......+ ...+...|...|.+++|   
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~---~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W---  137 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS---GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW---  137 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC---cccccccccccccceeeEEEEEecCCCccceecc---
Confidence            6678999999999999999999999999999999885110   000000   0001111 22244568889999999   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCC----
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPG----  205 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~----  205 (279)
                          +|++.++++++.|++|.+||..+.+.+..+..|..     .|..+.|.|-|+++++- .|++|++|+...-+    
T Consensus       138 ----sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  138 ----SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             ----CCCccEEEEecccceEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence                77899999999999999999999999999999987     89999999999999965 99999999965410    


Q ss_pred             --Ccee-------------------------------ee-------eecccccCCCCCceEEEEEccC----CCc-----
Q 023672          206 --RDFE-------------------------------KY-------STLKGNKEGQAGIMSAIAFSPT----HTG-----  236 (279)
Q Consensus       206 --~~~~-------------------------------~~-------~~~~~~~~~~~~~v~~~~~sp~----~~~-----  236 (279)
                        ++++                               ..       ......+-||..++.++.|+|-    +..     
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence              0000                               00       1112234689999999999981    111     


Q ss_pred             -------EEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCC
Q 023672          237 -------MLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       237 -------~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                             .+|+|+.|++|.||.....+++..+.. ....|.+|+|+|||.
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF  338 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence                   788999999999999988888766553 456899999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.5e-25  Score=171.47  Aligned_cols=198  Identities=19%  Similarity=0.283  Sum_probs=145.8

Q ss_pred             ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..+||...++|.+|+|+. ..++|++.||+++|||++..+....+....           .......+++.+.|      
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-----------~~~g~Rv~~tsC~~------  325 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-----------PAGGKRVPVTSCAW------  325 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-----------cCCCcccCceeeec------
Confidence            567999999999999955 578999999999999998653211110000           11122235666655      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                       ++++..||+|..||.|.+|+..+......+...........|+|+.|+++|++|++ |.|+++++||++...+++....
T Consensus       326 -nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~t  404 (641)
T KOG0772|consen  326 -NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRT  404 (641)
T ss_pred             -CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhc
Confidence             88999999999999999999865433222222222122237999999999999996 5999999999998665554443


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeC------CCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .+.     ...+-+.++||| +..+|++|..      .|.+.+||..+.+.++.+.-....|..+.|||-
T Consensus       405 gL~-----t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  405 GLP-----TPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             CCC-----ccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence            332     123567899999 8899999853      567999999999999999877888999999983

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-23  Score=144.81  Aligned_cols=207  Identities=17%  Similarity=0.231  Sum_probs=147.6

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc------------ccCCC--------------
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS------------LAKDQ--------------  107 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~--------------  107 (279)
                      +..+-|++.|.|.+|+|+|++|++|+.|.+|++..++............            ++...              
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            3566799999999999999999999999999998776433211000000            00000              


Q ss_pred             ---------CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc--cccce
Q 023672          108 ---------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--EITAA  176 (279)
Q Consensus       108 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v  176 (279)
                               .........+|.+.|..+        .+-++-.+++|+.|.+|++||++-..++.++......+  ....|
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghilal--------yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILAL--------YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEEE--------EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence                     000000111122222222        12266789999999999999999988888776433222  23479


Q ss_pred             eeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       177 ~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      .+++..|.|++|++| .|....+||++.+ +   .++.+    ..|...|.++.|+| +..+|++++.|..|++-|+...
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~-r---~iq~f----~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGG-R---MIQRF----HPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCC-c---eeeee----CCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence            999999999999999 9999999999973 3   33334    68899999999999 9999999999999999998532


Q ss_pred             ----eEEEEEeecCCCEEEEEEccCC
Q 023672          256 ----ELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       256 ----~~~~~~~~~~~~v~~~~~spdg  277 (279)
                          -++..+..|.+.+..+.|+|..
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCcc
Confidence                2345566788889999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=4e-24  Score=151.62  Aligned_cols=222  Identities=15%  Similarity=0.180  Sum_probs=151.1

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCcccccccccc-----c
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACS-----L  103 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-----~  103 (279)
                      +.....+.+|++...+...    .....+|.+.|-.++|+| ....|++++.|.+|++||++.++.........     .
T Consensus        38 gs~dktv~v~n~e~~r~~~----~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~  113 (313)
T KOG1407|consen   38 GSFDKTVSVWNLERDRFRK----ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT  113 (313)
T ss_pred             cccCCceEEEEecchhhhh----hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence            3344456677776664432    125778999999999998 56789999999999999999776532211000     0


Q ss_pred             c---------CCCCcccceeeecC---------CCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEe
Q 023672          104 A---------KDQDSYEASLVVTE---------GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR  165 (279)
Q Consensus       104 ~---------~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~  165 (279)
                      .         ...+..+..+....         ...+..++|       +-++.+++.....|+|.|.....-+++..++
T Consensus       114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w-------~~~nd~Fflt~GlG~v~ILsypsLkpv~si~  186 (313)
T KOG1407|consen  114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW-------NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK  186 (313)
T ss_pred             EcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeee-------cCCCCEEEEecCCceEEEEeccccccccccc
Confidence            0         00000000011000         011222222       2233344444444555555555555555566


Q ss_pred             ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC
Q 023672          166 AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (279)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d  244 (279)
                      .|..     .+.||.|+|+|+++++| .|..+.+||+..    +.+...+    ..+.-+|..+.||- +|++||+|++|
T Consensus       187 AH~s-----nCicI~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~i----sRldwpVRTlSFS~-dg~~lASaSED  252 (313)
T KOG1407|consen  187 AHPS-----NCICIEFDPDGRYFATGSADALVSLWDVDE----LICERCI----SRLDWPVRTLSFSH-DGRMLASASED  252 (313)
T ss_pred             cCCc-----ceEEEEECCCCceEeeccccceeeccChhH----hhhheee----ccccCceEEEEecc-CcceeeccCcc
Confidence            6554     78899999999999987 999999999985    2344444    67788999999999 99999999999


Q ss_pred             CcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          245 QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       245 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ..|-|=++.+|..+..++ ++++...++|+|.-
T Consensus       253 h~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR  284 (313)
T ss_pred             ceEEeEecccCCeEEEee-ccCCceeEEecCCC
Confidence            999999999999999988 78899999999964

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-25  Score=177.92  Aligned_cols=185  Identities=15%  Similarity=0.225  Sum_probs=144.5

Q ss_pred             ceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .+..|.|.. +.++|||++..|.|.+||+.....              .........|...+..+.|++.      ...+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r--------------nk~l~~f~EH~Rs~~~ldfh~t------ep~i  148 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR--------------NKLLTVFNEHERSANKLDFHST------EPNI  148 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc--------------chhhhHhhhhccceeeeeeccC------CccE
Confidence            355678876 667999999999999999985210              0111134567789999999754      4459


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      |++|+.||+|++||++..+...++.....     .|..+.|+|. +..++++ ..|.+.+||+|.+.+.       ...+
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-------~~k~  216 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-------EKKL  216 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchhH-------HHHh
Confidence            99999999999999999888888877554     8999999997 4556666 7899999999986332       2223


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~~  279 (279)
                      .+|.++|.++.|+| ++.+||||+.|+.|+|||+.+++.-....- -..+|..++|-|+-+|
T Consensus       217 ~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  217 TAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             hcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            79999999999999 999999999999999999987654333332 3458999999998653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-24  Score=171.93  Aligned_cols=216  Identities=19%  Similarity=0.249  Sum_probs=166.5

Q ss_pred             ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+.-.++.|+...............+..|.+.|+.++...+++.|+++|.|-+|++|+...+..               +
T Consensus        44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---------------~  108 (735)
T KOG0308|consen   44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---------------F  108 (735)
T ss_pred             CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---------------h
Confidence            3333667777654433221123346788999999999999999999999999999999985420               1


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe--eeEEEecc---Ccc-ccccceeeEEECCC
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAY---DAV-DEITAAFSVAFNPT  184 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~---~~~-~~~~~v~~~~~~~~  184 (279)
                      .......|...|.++++-      .++...+|+|+.|+.|++||++++.  .+..+...   ... ++..+|++++.++.
T Consensus       109 c~stir~H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t  182 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT  182 (735)
T ss_pred             hHhhhhcccchheeeeec------ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence            112344567788888762      4577799999999999999999873  23222211   111 33348999999999


Q ss_pred             CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       185 ~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      |..+++| ..+.+++||.++.    +....+    .||...|.++-.++ +|..+++++.||+|++||+...+++.++..
T Consensus       183 ~t~ivsGgtek~lr~wDprt~----~kimkL----rGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~v  253 (735)
T KOG0308|consen  183 GTIIVSGGTEKDLRLWDPRTC----KKIMKL----RGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIV  253 (735)
T ss_pred             ceEEEecCcccceEEeccccc----cceeee----eccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEe
Confidence            9888876 8999999999985    333344    69999999999999 999999999999999999999999999999


Q ss_pred             cCCCEEEEEEccC
Q 023672          264 QEGGVTHVSKLSS  276 (279)
Q Consensus       264 ~~~~v~~~~~spd  276 (279)
                      |...|+++..+|+
T Consensus       254 H~e~VWaL~~~~s  266 (735)
T KOG0308|consen  254 HKEGVWALQSSPS  266 (735)
T ss_pred             ccCceEEEeeCCC
Confidence            9999999998875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.5e-24  Score=168.20  Aligned_cols=187  Identities=17%  Similarity=0.248  Sum_probs=160.9

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+..|++.|.++.|+|...+++++-.+|.|.||+.++.........                 ...+|....|       
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-----------------~~~PvRa~kf-------   63 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-----------------SEVPVRAAKF-------   63 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-----------------cccchhhhee-------
Confidence            5566899999999999999999999999999999997655332211                 1235555555       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      -+..+++++|+.|..|++|+.++++.+..+..|..     .|.+++.+|.-.+++++ .|-.|++||....   ..+.++
T Consensus        64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~qt  135 (794)
T KOG0276|consen   64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQT  135 (794)
T ss_pred             eeccceEEEecCCceEEEEecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeeeE
Confidence            33566999999999999999999999999999987     99999999999999866 8899999999863   344455


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      +    .+|...|.+++|+|.+...+++++-|++|++|.+.+..+..++.+|..+|+++.+-|-|
T Consensus       136 f----eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  136 F----EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             E----cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence            5    89999999999999888999999999999999999999999999999999999998865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.9e-23  Score=149.08  Aligned_cols=202  Identities=15%  Similarity=0.223  Sum_probs=151.6

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc----------------cc-----------cCCCCccc
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC----------------SL-----------AKDQDSYE  111 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----------------~~-----------~~~~~~~~  111 (279)
                      -.+.|+++.|+++|.+|++++.|.+++|||..++.........                ..           +.-.++.-
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            4567999999999999999999999999999887653222111                00           00111222


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      ..+..+|...|..++.       +|-+..+++++.|++|++||++..++...+.....       ..++|.|.|-++|++
T Consensus        93 lRYF~GH~~~V~sL~~-------sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-------pi~AfDp~GLifA~~  158 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSV-------SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-------PIAAFDPEGLIFALA  158 (311)
T ss_pred             EEEcCCCCceEEEEEe-------cCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-------cceeECCCCcEEEEe
Confidence            2334456667777765       66778999999999999999998888777766543       358999999999977


Q ss_pred             -cCCeEEEEEccCCC-CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC--
Q 023672          192 -YNKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG--  267 (279)
Q Consensus       192 -~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--  267 (279)
                       ....|++||+|.-+ .++... .+.   .+.....+.+.||| +|..|+.+...+.+++.|.-+|..+.++..+...  
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf-~i~---~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTF-SIT---DNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeE-ccC---CCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence             55599999999753 333332 221   24456789999999 8999999999999999999999999999887542  


Q ss_pred             -EEEEEEccCCCC
Q 023672          268 -VTHVSKLSSAYT  279 (279)
Q Consensus       268 -v~~~~~spdg~~  279 (279)
                       ..+..|+|||+|
T Consensus       234 ~~~~a~ftPds~F  246 (311)
T KOG1446|consen  234 LPLSATFTPDSKF  246 (311)
T ss_pred             cceeEEECCCCcE
Confidence             267889999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=5.8e-24  Score=173.32  Aligned_cols=190  Identities=18%  Similarity=0.269  Sum_probs=158.0

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (279)
                      +..||..++....     ..+.||.+.|.+++|..-+.+|++|+.|.++++||..++.+..                 ..
T Consensus       230 l~~~~~~~~~~i~-----~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-----------------~l  287 (537)
T KOG0274|consen  230 LHLWDLNNGYLIL-----TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-----------------SL  287 (537)
T ss_pred             eEEeecccceEEE-----eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-----------------Ee
Confidence            3456655555443     1488999999999999878899999999999999999876532                 33


Q ss_pred             ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC
Q 023672          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (279)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~  194 (279)
                      ..|...+.++..         ....+++|+.|.+|++|++.++..+..+..|..     +|+++.++  +.++++| .|+
T Consensus       288 ~gh~stv~~~~~---------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~  351 (537)
T KOG0274|consen  288 QGHTSSVRCLTI---------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDG  351 (537)
T ss_pred             cCCCceEEEEEc---------cCceEeeccCCceEEEEeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCc
Confidence            457777877755         444888899999999999999999999998776     99999998  6777766 999


Q ss_pred             eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEE
Q 023672          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       195 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~  273 (279)
                      +|++||..+.    +++..+    .+|..+|.++.+.+ . ..+++|+.|++|++||+++. +++.++.+|..-|.++.+
T Consensus       352 ~v~VW~~~~~----~cl~sl----~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~  421 (537)
T KOG0274|consen  352 TVKVWDPRTG----KCLKSL----SGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL  421 (537)
T ss_pred             eEEEEEhhhc----eeeeee----cCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc
Confidence            9999999973    555555    78999999998876 4 89999999999999999999 999999999887776654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=8.6e-25  Score=159.94  Aligned_cols=212  Identities=10%  Similarity=0.116  Sum_probs=170.2

Q ss_pred             eeeEecCCCCcccceee--eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYN--QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      -+.+|+..++++.....  ....+--|.++|.|+.|+.|...||+|+.||.|+||.+.++.+...               
T Consensus       236 FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---------------  300 (508)
T KOG0275|consen  236 FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---------------  300 (508)
T ss_pred             eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---------------
Confidence            46789998888765322  2224455889999999999999999999999999999998876433               


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                       ....|...|+++.|       +.|+..+++++.|.++++.-+.+|++++.+++|..     .|+...|.++|..++++ 
T Consensus       301 -FdrAHtkGvt~l~F-------SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-----yvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  301 -FDRAHTKGVTCLSF-------SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-----YVNEATFTDDGHHIISAS  367 (508)
T ss_pred             -hhhhhccCeeEEEE-------ccCcchhhcccccceEEEeccccchhHHHhcCccc-----cccceEEcCCCCeEEEec
Confidence             34456678888877       78899999999999999999999999999999987     89999999999999954 


Q ss_pred             cCCeEEEEEccCCCC-----------ceee-----------------------------eeecccccCCCCCceEEEEEc
Q 023672          192 YNKSVRVFDVHRPGR-----------DFEK-----------------------------YSTLKGNKEGQAGIMSAIAFS  231 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~-----------~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~s  231 (279)
                      .||+|++|+.++..-           +...                             ...+... +...+...+++.|
T Consensus       368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG-kREgGdFi~~~lS  446 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG-KREGGDFINAILS  446 (508)
T ss_pred             CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC-CccCCceEEEEec
Confidence            999999999987310           0000                             0000000 1123456678899


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       232 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      | .|.++.+.++|+.++.|.+.+|.+..++..|+..|.+++-+|.
T Consensus       447 p-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  447 P-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             C-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence            9 9999999999999999999999999999999999999988875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.5e-24  Score=162.42  Aligned_cols=200  Identities=15%  Similarity=0.247  Sum_probs=156.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+|+..+.....      ++.-..+.|.++.|..||++||.|...|.|+|||+.+...                 ...
T Consensus        49 rvqly~~~~~~~~k------~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-----------------LR~  105 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRK------TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI-----------------LRQ  105 (487)
T ss_pred             EEEEEecchhhhhh------hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH-----------------HHH
Confidence            34455555444443      3445678899999999999999999999999999654211                 113


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE-EEe-c
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAG-Y  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~  192 (279)
                      ...|..++..+.|+|.      ++..+++|+.|+.+++||+.+......+..|..     .|.|.+|+|-...+ ++| .
T Consensus       106 ~~ah~apv~~~~f~~~------d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvtGsY  174 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQ------DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVTGSY  174 (487)
T ss_pred             HhhccCceeEEEeccc------CCeEEEecCCCceEEEEEcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEecCC
Confidence            3457778999988765      677899999999999999999987667888877     99999999987654 466 9


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEE
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV  271 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~  271 (279)
                      ||.|++||.+...   .....+     .|..+|.++.+-| +|..+++++ ...|++||+.+| +.+..+..|...|+|+
T Consensus       175 Dg~vrl~DtR~~~---~~v~el-----nhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL  244 (487)
T KOG0310|consen  175 DGKVRLWDTRSLT---SRVVEL-----NHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCL  244 (487)
T ss_pred             CceEEEEEeccCC---ceeEEe-----cCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEE
Confidence            9999999999843   222233     7888999999999 989999987 456999999965 4556666699999999


Q ss_pred             EEccCCC
Q 023672          272 SKLSSAY  278 (279)
Q Consensus       272 ~~spdg~  278 (279)
                      ++..++.
T Consensus       245 ~l~s~~~  251 (487)
T KOG0310|consen  245 RLASDST  251 (487)
T ss_pred             EeecCCc
Confidence            9998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-24  Score=174.66  Aligned_cols=200  Identities=15%  Similarity=0.213  Sum_probs=156.9

Q ss_pred             eeeEecCCC---CcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           35 PLIRFDVPP---HRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        35 ~~~~~d~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+.+||+..   .+++.      .+..|+..|+++.|++ ...+|++||.||+|++||++......              
T Consensus       111 ~i~vWdlnk~~rnk~l~------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~--------------  170 (839)
T KOG0269|consen  111 VISVWDLNKSIRNKLLT------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS--------------  170 (839)
T ss_pred             cEEEEecCccccchhhh------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--------------
Confidence            577888876   33333      6778999999999998 56789999999999999998653321              


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                         ......+.|.++.|+|.      .+..++++...|.+.+||++.. ++...+..|..     +|.|+.|+|++.+||
T Consensus       171 ---t~~~nSESiRDV~fsp~------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-----pV~c~nwhPnr~~lA  236 (839)
T KOG0269|consen  171 ---TFRSNSESIRDVKFSPG------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-----PVLCLNWHPNREWLA  236 (839)
T ss_pred             ---cccccchhhhceeeccC------CCceEEEecCCceEEEeeccCchhHHHHhhcccC-----ceEEEeecCCCceee
Confidence               22346678999999886      4779999999999999999975 45566667776     999999999999999


Q ss_pred             Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC--CCcEEEEecCCC-eEEEEEeecC
Q 023672          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNM-ELLYVLHGQE  265 (279)
Q Consensus       190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~--dg~i~~wd~~~~-~~~~~~~~~~  265 (279)
                      +| .|+.|+|||+..+. . ....++     ....+|.+++|-|.....|++++.  |-.|+|||++-. -+..++..|.
T Consensus       237 TGGRDK~vkiWd~t~~~-~-~~~~tI-----nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  237 TGGRDKMVKIWDMTDSR-A-KPKHTI-----NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             ecCCCccEEEEeccCCC-c-cceeEE-----eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence            76 99999999998632 1 222222     224589999999977778888764  778999999754 4567888899


Q ss_pred             CCEEEEEEcc
Q 023672          266 GGVTHVSKLS  275 (279)
Q Consensus       266 ~~v~~~~~sp  275 (279)
                      ..++.++|-.
T Consensus       310 ~~vt~i~W~~  319 (839)
T KOG0269|consen  310 DSVTGIAWDS  319 (839)
T ss_pred             ccccceeccC
Confidence            9999998865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=1.7e-23  Score=147.76  Aligned_cols=163  Identities=18%  Similarity=0.270  Sum_probs=132.8

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|++.|..+-|....+.+++++.|++|++||.+++...+.                  ..-..+|.++.       +
T Consensus       138 E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s------------------L~~~s~VtSlE-------v  192 (334)
T KOG0278|consen  138 EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS------------------LEFNSPVTSLE-------V  192 (334)
T ss_pred             hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE------------------EecCCCCccee-------e
Confidence            6889999999999999888999999999999999998754321                  22223555554       4


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +++|++|.++ ..+.|.+||..+-..++.+..+.      .|.+.+++|+...+++| .|..++.||..++ .....   
T Consensus       193 s~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~------nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~---  261 (334)
T KOG0278|consen  193 SQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC------NVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGS---  261 (334)
T ss_pred             ccCCCEEEEe-cCceeEEeccccccceeeccCcc------ccccccccCCCceEEecCcceEEEEEeccCC-ceeee---
Confidence            7888877665 46679999999999888888776      78899999998777776 9999999999995 32222   


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                         ..++|.++|.|+.|+| +|...++|++||+|+||.+..++.
T Consensus       262 ---~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  262 ---YNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ---cccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCc
Confidence               1279999999999999 999999999999999999876553

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.9e-23  Score=162.61  Aligned_cols=199  Identities=15%  Similarity=0.233  Sum_probs=160.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCC-CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSI-PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||....+...      .+.+ |...|-+++|+  +..+.+|+.|+.|..+|++.......                
T Consensus       240 ~v~iwD~~~~k~~~------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----------------  295 (484)
T KOG0305|consen  240 TVQIWDVKEQKKTR------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----------------  295 (484)
T ss_pred             eEEEEehhhccccc------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----------------
Confidence            56788877776655      5666 99999999999  66789999999999999986533111                


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEE--
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA--  190 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--  190 (279)
                      ...+|...|..+.|       ++++.++|+|+.|+.+.|||.....++..+..|..     .|.+++|+|-. .+||+  
T Consensus       296 ~~~~H~qeVCgLkw-------s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-----AVKA~awcP~q~~lLAsGG  363 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKW-------SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-----AVKALAWCPWQSGLLATGG  363 (484)
T ss_pred             hhhcccceeeeeEE-------CCCCCeeccCCCccceEeccCCCccccEEEeccce-----eeeEeeeCCCccCceEEcC
Confidence            24567788999988       77999999999999999999988888888888887     99999999964 56664  


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE--eCCCcEEEEecCCCeEEEEEeecCCC
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG--SYSQTSAIYREDNMELLYVLHGQEGG  267 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~  267 (279)
                      | .|+.|++||..++ .   .+..+     .-...|+++.|++ ...-|+++  -.++.|.||+..+.+++..+.+|...
T Consensus       364 Gs~D~~i~fwn~~~g-~---~i~~v-----dtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R  433 (484)
T KOG0305|consen  364 GSADRCIKFWNTNTG-A---RIDSV-----DTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR  433 (484)
T ss_pred             CCcccEEEEEEcCCC-c---Eeccc-----ccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence            3 7999999999984 2   22222     2356799999999 55444443  34667999999999999999999999


Q ss_pred             EEEEEEccCCCC
Q 023672          268 VTHVSKLSSAYT  279 (279)
Q Consensus       268 v~~~~~spdg~~  279 (279)
                      |..+++||||.+
T Consensus       434 Vl~la~SPdg~~  445 (484)
T KOG0305|consen  434 VLYLALSPDGET  445 (484)
T ss_pred             eEEEEECCCCCE
Confidence            999999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=1.8e-23  Score=152.02  Aligned_cols=182  Identities=14%  Similarity=0.216  Sum_probs=147.2

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ...+++..|.+.|+++.|+|....|++|+.|++|++||+.........               ..+....+|.++.|   
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~---------------K~~qd~~~vrsiSf---  224 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF---------------KVFQDTEPVRSISF---  224 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH---------------HHhhccceeeeEee---
Confidence            345688899999999999999999999999999999999854322111               23345568888877   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                          +|.|.+|+.|....++++||+++-++...-.  ....+...|+++.+++.+++.+++ .||.|++||--.+    +
T Consensus       225 ----HPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----r  294 (430)
T KOG0640|consen  225 ----HPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----R  294 (430)
T ss_pred             ----cCCCceEEEecCCCceeEEeccceeEeeecC--cccccccceeEEEecCCccEEEEeccCCcEEeeccccH----H
Confidence                6789999999999999999999987755443  233445589999999999988866 9999999998764    5


Q ss_pred             eeeecccccCCCC-CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          210 KYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       210 ~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ++.++.   .+|. ..|++..|.. ++.++++.+.|..+++|.+.+++++..+.+.
T Consensus       295 Cv~t~~---~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  295 CVRTIG---NAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             HHHHHH---hhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence            555554   3454 4799999999 9999999999999999999999998887654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.8e-23  Score=152.65  Aligned_cols=212  Identities=17%  Similarity=0.261  Sum_probs=154.7

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeC------CCCccccccc-----cc---
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL------PENGISYDVN-----AC---  101 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~------~~~~~~~~~~-----~~---  101 (279)
                      ..+|.++++.++.      .+.||.+.|++++|++.+.++++++.|++-.||..      ..........     .+   
T Consensus       172 A~iWs~Esg~CL~------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe  245 (481)
T KOG0300|consen  172 ARIWSLESGACLA------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE  245 (481)
T ss_pred             eeEEeecccccee------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence            3577777777766      78999999999999999999999999999999983      2211100000     00   


Q ss_pred             --cccC---CCCc----ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccc
Q 023672          102 --SLAK---DQDS----YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE  172 (279)
Q Consensus       102 --~~~~---~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  172 (279)
                        ....   ..+.    ....-..+|...|.+..|       -..|+.+++++.|.+..+||+++++.+..+.+|..   
T Consensus       246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW-------L~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~---  315 (481)
T KOG0300|consen  246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW-------LAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS---  315 (481)
T ss_pred             cccccccccccCCceeeeeeeeeeccccceEehhh-------hcCcceeeeeeccccceeeeeccCceeccccCcch---
Confidence              0000   0010    001112235556666666       45788999999999999999999999999999987   


Q ss_pred             ccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                        ..+.++-+|..++++++ .|.+.++||++..   +.....+    .+|...|+++.|.. + ..+++|+.|.+|++||
T Consensus       316 --ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VF----QGHtdtVTS~vF~~-d-d~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  316 --ELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVF----QGHTDTVTSVVFNT-D-DRVVSGSDDRTVKVWD  384 (481)
T ss_pred             --hccccccCCcceEEEEeccCceeEeccchhh---cceeeee----cccccceeEEEEec-C-CceeecCCCceEEEee
Confidence              78889999999988855 9999999999852   2233333    89999999999987 3 5799999999999999


Q ss_pred             cCCCe-EEEEEeecCCCEEEEEEcc
Q 023672          252 EDNME-LLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       252 ~~~~~-~~~~~~~~~~~v~~~~~sp  275 (279)
                      +++.. ++.++. ...+++.++.+.
T Consensus       385 LrNMRsplATIR-tdS~~NRvavs~  408 (481)
T KOG0300|consen  385 LRNMRSPLATIR-TDSPANRVAVSK  408 (481)
T ss_pred             eccccCcceeee-cCCccceeEeec
Confidence            99864 566665 344555555554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=2.8e-23  Score=169.32  Aligned_cols=195  Identities=16%  Similarity=0.286  Sum_probs=162.0

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      +.....+++||..++.+.+      .+.+|.+.|.++...+  ..+++|+.|.+|++|++.++....             
T Consensus       267 gS~D~t~rvWd~~sg~C~~------~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~-------------  325 (537)
T KOG0274|consen  267 GSTDKTERVWDCSTGECTH------SLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN-------------  325 (537)
T ss_pred             EecCCcEEeEecCCCcEEE------EecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE-------------
Confidence            3445578899999999988      7889999999998764  467889999999999999765422             


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                          +..+|..+|.++..         ++.++++|+.|++|++||+.+++++..+..|..     .|+++.+.+. ..++
T Consensus       326 ----l~~~h~~~V~~v~~---------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-----~V~sl~~~~~-~~~~  386 (537)
T KOG0274|consen  326 ----LLRGHTGPVNCVQL---------DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-----RVYSLIVDSE-NRLL  386 (537)
T ss_pred             ----EeccccccEEEEEe---------cCCEEEEEecCceEEEEEhhhceeeeeecCCcc-----eEEEEEecCc-ceEE
Confidence                23338889999976         577999999999999999999999999999887     9999988776 6777


Q ss_pred             Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCC
Q 023672          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGG  267 (279)
Q Consensus       190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~  267 (279)
                      +| .|+.|++||+++..   ++..++    .+|..-+.++.+   .+.+|++++.|++|++||..+++++.++.+ |.+.
T Consensus       387 Sgs~D~~IkvWdl~~~~---~c~~tl----~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~  456 (537)
T KOG0274|consen  387 SGSLDTTIKVWDLRTKR---KCIHTL----QGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGG  456 (537)
T ss_pred             eeeeccceEeecCCchh---hhhhhh----cCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCccc
Confidence            65 99999999999831   344444    788888877666   457999999999999999999999999998 6688


Q ss_pred             EEEEEEc
Q 023672          268 VTHVSKL  274 (279)
Q Consensus       268 v~~~~~s  274 (279)
                      |..+++.
T Consensus       457 v~~l~~~  463 (537)
T KOG0274|consen  457 VSALALG  463 (537)
T ss_pred             EEEeecC
Confidence            8888774

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.7e-24  Score=151.09  Aligned_cols=192  Identities=20%  Similarity=0.258  Sum_probs=149.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ...+|++.|..+...-.|++|||++.|++|+|+..+++...              ....-..+|.++|..+.|     +-
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s--------------~ll~~L~Gh~GPVwqv~w-----ah   66 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS--------------KLLAELTGHSGPVWKVAW-----AH   66 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc--------------eeeeEecCCCCCeeEEee-----cc
Confidence            45679999999999999999999999999999999865321              111234568889999999     22


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeE--EEeccCccccccceeeEEECCCC--CEEEEe-cCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                      -.-|.+||+++.||.|.||.-.+++-.+  ....|.     ..|++++|.|.+  -.|+++ .||.|.|.+.+..+.   
T Consensus        67 Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~-----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---  138 (299)
T KOG1332|consen   67 PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS-----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---  138 (299)
T ss_pred             cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc-----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---
Confidence            2368899999999999999988885332  233333     389999999974  556665 999999999987411   


Q ss_pred             eeeecccccCCCCCceEEEEEccCC---C-----------cEEEEEeCCCcEEEEecCCCe--EEEEEeecCCCEEEEEE
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTH---T-----------GMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~---~-----------~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~  273 (279)
                        .........|.-.|++++|.| .   |           ..|++|+.|+.|+||+..+++  +-.+|.+|.+.|+.++|
T Consensus       139 --w~t~ki~~aH~~GvnsVswap-a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  139 --WTTSKIVFAHEIGVNSVSWAP-ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW  215 (299)
T ss_pred             --ccchhhhhccccccceeeecC-cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence              111222268888999999999 4   3           459999999999999998763  44569999999999999


Q ss_pred             ccC
Q 023672          274 LSS  276 (279)
Q Consensus       274 spd  276 (279)
                      .|.
T Consensus       216 aP~  218 (299)
T KOG1332|consen  216 APS  218 (299)
T ss_pred             ccc
Confidence            995

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=3.2e-23  Score=157.30  Aligned_cols=194  Identities=16%  Similarity=0.276  Sum_probs=146.4

Q ss_pred             eeeeEecCCCCccc-ceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           34 WPLIRFDVPPHRTY-HFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        34 ~~~~~~d~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      -.+..||+.....- ........+.+|.+.|..++|++ +...|++++.|+.+.|||++++..               ..
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---------------~~  264 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---------------KP  264 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---------------CC
Confidence            35677777654431 22334447889999999999999 566889999999999999996311               11


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCC-EEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF  189 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  189 (279)
                      ......|...|.+++|+|.      ++..||+|+.|++|.+||+|+. +++.++..|..     .|.++.|+|... .|+
T Consensus       265 ~~~~~ah~~~vn~~~fnp~------~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-----ev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPF------NEFILATGSADKTVALWDLRNLNKPLHTFEGHED-----EVFQVEWSPHNETVLA  333 (422)
T ss_pred             cccccccCCceeEEEeCCC------CCceEEeccCCCcEEEeechhcccCceeccCCCc-----ceEEEEeCCCCCceeE
Confidence            1244567889999999876      5779999999999999999985 45677777776     999999999865 455


Q ss_pred             E-ecCCeEEEEEccCCCCcee------eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          190 A-GYNKSVRVFDVHRPGRDFE------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       190 ~-~~d~~i~~~d~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      + |.|+.+.|||+..-+....      -...+.....||...|..+.|+|...-.+++.++|+.+.||.+.
T Consensus       334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            4 4999999999986432210      00011112279999999999999667788899999999999975

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.7e-23  Score=155.64  Aligned_cols=189  Identities=18%  Similarity=0.313  Sum_probs=142.5

Q ss_pred             eeeEecCCCCccc----------ceeeeeeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672           35 PLIRFDVPPHRTY----------HFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSL  103 (279)
Q Consensus        35 ~~~~~d~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  103 (279)
                      .+.+|++......          ...++..+..+|.+.=.+++|||- .-.|++|.--+.|++|...++.......    
T Consensus       176 ~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~----  251 (440)
T KOG0302|consen  176 RVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR----  251 (440)
T ss_pred             cEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc----
Confidence            5677877532211          123344578899999999999992 2358888888899999998765432211    


Q ss_pred             cCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEE--EeccCccccccceeeEEE
Q 023672          104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAF  181 (279)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~  181 (279)
                                -...|...|-+++|+|.      ....|++|+.||+|+|||++.+.....  .+.|..     .|+.|+|
T Consensus       252 ----------Pf~gH~~SVEDLqWSpt------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s-----DVNVISW  310 (440)
T KOG0302|consen  252 ----------PFTGHTKSVEDLQWSPT------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS-----DVNVISW  310 (440)
T ss_pred             ----------cccccccchhhhccCCc------cCceEEeeecCceEEEEEecCCCccceeEeeccCC-----ceeeEEc
Confidence                      22347789999999775      456899999999999999999833222  244443     8999999


Q ss_pred             CCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       182 ~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      +....+|++| .||+++|||+|.- +..+.+..+    +-|..+|+++.|+|.+...|++++.|..|.|||+.
T Consensus       311 nr~~~lLasG~DdGt~~iwDLR~~-~~~~pVA~f----k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  311 NRREPLLASGGDDGTLSIWDLRQF-KSGQPVATF----KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             cCCcceeeecCCCceEEEEEhhhc-cCCCcceeE----EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            9998888887 8999999999972 222333344    78999999999999888899999999999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.7e-23  Score=144.94  Aligned_cols=215  Identities=17%  Similarity=0.201  Sum_probs=159.2

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      -...-.+++|.+......   ....++.||.++|..++|..  .|.+||+++.||.|.||.-.+++..+..         
T Consensus        29 csSD~tVkIf~v~~n~~s---~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~---------   96 (299)
T KOG1332|consen   29 CSSDGTVKIFEVRNNGQS---KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY---------   96 (299)
T ss_pred             ecCCccEEEEEEcCCCCc---eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh---------
Confidence            334446778887766542   23448999999999999966  8999999999999999998877442211         


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-e--eeEEEeccCccccccceeeEEECCC
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-L--LRCTYRAYDAVDEITAAFSVAFNPT  184 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~--~~~~~~~~~~~~~~~~v~~~~~~~~  184 (279)
                            ....|...|++++|.|     +..|-.|++++.||.|.+.+.++. .  ..+....|..     .|++++|.|.
T Consensus        97 ------e~~~h~~SVNsV~wap-----heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-----GvnsVswapa  160 (299)
T KOG1332|consen   97 ------EHAAHSASVNSVAWAP-----HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-----GVNSVSWAPA  160 (299)
T ss_pred             ------hhhhhcccceeecccc-----cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-----ccceeeecCc
Confidence                  2345677999999966     456779999999999999998764 1  2223334444     8899999986


Q ss_pred             ---C-----------CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC---CcEEEEEeCCCc
Q 023672          185 ---G-----------TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQT  246 (279)
Q Consensus       185 ---~-----------~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~~l~~~~~dg~  246 (279)
                         |           +.|++| .|..|+||+...+  ..    .+...+.+|.+.|+.++|.|..   ...|+++++||+
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SW----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCc--ch----hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence               4           457755 9999999999874  12    2223348999999999999933   247999999999


Q ss_pred             EEEEecCCC-e--EEEEEeecCCCEEEEEEccCCC
Q 023672          247 SAIYREDNM-E--LLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       247 i~~wd~~~~-~--~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +.||..+.- +  ....++.....++.+.||+.|.
T Consensus       235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn  269 (299)
T KOG1332|consen  235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN  269 (299)
T ss_pred             EEEEEecCccCcccccccccCCcceEEEEEecccc
Confidence            999987622 1  1223444567899999999885

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=6.9e-23  Score=164.57  Aligned_cols=202  Identities=13%  Similarity=0.275  Sum_probs=160.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+|+..+.++.+.      +.  .+.+.+..|.|.++++++|...|.+.+||+.......                 .
T Consensus       395 SikiWn~~t~kciRT------i~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-----------------t  449 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRT------IT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE-----------------T  449 (888)
T ss_pred             cEEEEEccCcceeEE------ec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh-----------------h
Confidence            467888888877663      22  2368899999999999999999999999998543321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-----CeeeEEEecc--CccccccceeeEEECCCCCE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAY--DAVDEITAAFSVAFNPTGTK  187 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-----~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  187 (279)
                      ...|.+.+++++.       +||+..+++|+.|.+|++||..-     +...+.+..+  ....-...|.|+.+|||+++
T Consensus       450 i~AHdgaIWsi~~-------~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  450 IRAHDGAIWSISL-------SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhccccceeeeee-------cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            2356778888865       88999999999999999999752     2111112111  11122237899999999999


Q ss_pred             EEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672          188 IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (279)
Q Consensus       188 l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  266 (279)
                      ++++ .|.+++||-+.+-    +..-.+    .||.-||.|+..|| ++.+++|||.|..|++|-+.-|.|...+-+|.+
T Consensus       523 LaVsLLdnTVkVyflDtl----KFflsL----YGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD  593 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTL----KFFLSL----YGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD  593 (888)
T ss_pred             EEEEeccCeEEEEEecce----eeeeee----cccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence            9998 9999999999882    333333    79999999999999 999999999999999999999999999999999


Q ss_pred             CEEEEEEccCC
Q 023672          267 GVTHVSKLSSA  277 (279)
Q Consensus       267 ~v~~~~~spdg  277 (279)
                      .|.++.|-|..
T Consensus       594 Svm~V~F~P~~  604 (888)
T KOG0306|consen  594 SVMSVQFLPKT  604 (888)
T ss_pred             ceeEEEEcccc
Confidence            99999999964

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=9.4e-23  Score=153.41  Aligned_cols=193  Identities=16%  Similarity=0.204  Sum_probs=153.1

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ...++..|++.|+-+.||++|++||+++.|.+..+|++.......              ......+|..+|.-+.|    
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k--------------l~~tlvgh~~~V~yi~w----  277 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK--------------LKKTLVGHSQPVSYIMW----  277 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee--------------eeeeeecccCceEEEEE----
Confidence            344788999999999999999999999999999999987432210              11134567778888888    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                         |||.+++++|+.|..+.+||+.+|.....+.....    ..+.+++|.|||..+++| .|+.+..||+...  ....
T Consensus       278 ---SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~----~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn--~~~~  348 (519)
T KOG0293|consen  278 ---SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG----FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN--ILGN  348 (519)
T ss_pred             ---CCCCCeEEecCchHheeeccCCcchhhhhcccCcC----CCcceeEEccCCceeEecCCCCcEEEecCCcc--hhhc
Confidence               78999999999999999999999998877765411    278899999999999987 9999999999852  2222


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..-      .....|.+++.++ +|.++++.+.|..|++++..+......+. -..+|+++..|.||+|
T Consensus       349 W~g------vr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~  409 (519)
T KOG0293|consen  349 WEG------VRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKL  409 (519)
T ss_pred             ccc------cccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcE
Confidence            111      1124589999999 88899888999999999998776665444 4568999999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.9e-23  Score=154.65  Aligned_cols=231  Identities=15%  Similarity=0.187  Sum_probs=167.0

Q ss_pred             hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc-------
Q 023672           27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN-------   99 (279)
Q Consensus        27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-------   99 (279)
                      ...+...-.+.+||+....+..      ++.+|.+.|.+|+++.  ..+++++.|.+|+.|.++......-..       
T Consensus        82 ~aSGs~DG~VkiWnlsqR~~~~------~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gI  153 (433)
T KOG0268|consen   82 VASGSCDGEVKIWNLSQRECIR------TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGI  153 (433)
T ss_pred             hhccccCceEEEEehhhhhhhh------eeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccc
Confidence            4445666688999999988877      7889999999999987  678899999999999976532100000       


Q ss_pred             ----cccccCCCCcccceeeecCCCceEEEEeeCc---ccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccc
Q 023672          100 ----ACSLAKDQDSYEASLVVTEGESVYDFCWFPH---MSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD  171 (279)
Q Consensus       100 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  171 (279)
                          ........+..+.........++.++.|.-+   ++.|+|.. ..|++|..|+.|.+||++++.++..+...-   
T Consensus       154 dh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---  230 (433)
T KOG0268|consen  154 DHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---  230 (433)
T ss_pred             ccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---
Confidence                0000111112222333445557777777543   44566654 467788899999999999999887766543   


Q ss_pred             cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                         ..+.|+|+|.+-.++++ .|..++.||++.-..+.       ....+|.++|.+++||| .|+-+++||.|.+|+||
T Consensus       231 ---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-------~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf  299 (433)
T KOG0268|consen  231 ---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-------NVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIF  299 (433)
T ss_pred             ---cccceecCccccceeeccccccceehhhhhhcccc-------hhhcccceeEEEeccCC-CcchhccccccceEEEe
Confidence               45689999966555566 99999999999743333       22378999999999999 89999999999999999


Q ss_pred             ecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672          251 REDNMELLYVLHG-QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       251 d~~~~~~~~~~~~-~~~~v~~~~~spdg~~  279 (279)
                      ..+.+.....+.. -...|.++.||.|.+|
T Consensus       300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKY  329 (433)
T ss_pred             ecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence            9988765433321 2346999999999886

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=6.2e-23  Score=170.79  Aligned_cols=194  Identities=16%  Similarity=0.219  Sum_probs=151.9

Q ss_pred             CCceEEEEEccCCCeEEEee--CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ...|.++..+|||..++||+  .||.++||+.+.-.........     .-.........|.+.|.++.|       +||
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~-----~l~k~l~~m~~h~~sv~CVR~-------S~d   80 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE-----NLPKHLCTMDDHDGSVNCVRF-------SPD   80 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc-----ccchhheeeccccCceeEEEE-------CCC
Confidence            45699999999999999999  8999999998632110000000     001112234567779999988       889


Q ss_pred             CcEEEEecCCCcEEEEECCC-------C-----------eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEE
Q 023672          138 SCVFASTTRDHPIHLWDATT-------G-----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV  198 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~  198 (279)
                      |++||+|+.|+.|.+|+...       +           +.+..+..|..     .|..++|+|++.+++++ .|++|.+
T Consensus        81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsVii  155 (942)
T KOG0973|consen   81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVII  155 (942)
T ss_pred             CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEE
Confidence            99999999999999999872       1           24566666665     89999999999999965 9999999


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC------CCEEEEE
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------GGVTHVS  272 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~v~~~~  272 (279)
                      |+.++.    +....+    .+|.+.|-.+.|.| -|++|++-+.|++|+||++.+......+..+-      ...+.+.
T Consensus       156 wn~~tF----~~~~vl----~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS  226 (942)
T KOG0973|consen  156 WNAKTF----ELLKVL----RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS  226 (942)
T ss_pred             Eccccc----eeeeee----ecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence            999983    344444    79999999999999 99999999999999999988877777776543      2578899


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      |||||+|
T Consensus       227 WSPDG~~  233 (942)
T KOG0973|consen  227 WSPDGHH  233 (942)
T ss_pred             cCCCcCe
Confidence            9999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=2.6e-22  Score=151.86  Aligned_cols=206  Identities=16%  Similarity=0.210  Sum_probs=159.0

Q ss_pred             eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      ....+++|..+......      ....|..+|+.+..+|.|.||++++.||+....|++++.....              
T Consensus       281 ad~~i~vws~~~~s~~~------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~--------------  340 (506)
T KOG0289|consen  281 ADEIIRVWSVPLSSEPT------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV--------------  340 (506)
T ss_pred             CcceEEeeccccccCcc------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE--------------
Confidence            34456777776655433      6778999999999999999999999999999999997643210              


Q ss_pred             ceeee-cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          112 ASLVV-TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       112 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                        ... ...-.+++.       +|+|||.+|.+|..|+.|++||+.++..+..|.+|..     +|..++|+.+|.++++
T Consensus       341 --vs~~~s~v~~ts~-------~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-----~vk~i~FsENGY~Lat  406 (506)
T KOG0289|consen  341 --VSDETSDVEYTSA-------AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-----PVKAISFSENGYWLAT  406 (506)
T ss_pred             --EeeccccceeEEe-------eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-----ceeEEEeccCceEEEE
Confidence              111 111234555       4588999999999999999999999998999988886     9999999999999996


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC--CCeEEEEEeecCCC
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMELLYVLHGQEGG  267 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~  267 (279)
                      + .|+.|++||+|.. +.++.+..      .....+.++.|.+ .|.+|+.++.|=.|++++-.  ++.++..+..|.+.
T Consensus       407 ~add~~V~lwDLRKl-~n~kt~~l------~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~  478 (506)
T KOG0289|consen  407 AADDGSVKLWDLRKL-KNFKTIQL------DEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGL  478 (506)
T ss_pred             EecCCeEEEEEehhh-cccceeec------cccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccc
Confidence            6 8899999999973 33333211      2223699999999 99999999877666666633  56788888888888


Q ss_pred             EEEEEEccCCCC
Q 023672          268 VTHVSKLSSAYT  279 (279)
Q Consensus       268 v~~~~~spdg~~  279 (279)
                      .+++.|..+.+|
T Consensus       479 st~v~Fg~~aq~  490 (506)
T KOG0289|consen  479 STGVRFGEHAQY  490 (506)
T ss_pred             cceeeecccceE
Confidence            888888766543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=1.8e-22  Score=150.20  Aligned_cols=202  Identities=19%  Similarity=0.245  Sum_probs=150.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+++||..-....       ++.||.++|.+++|--..   ..|++++.|.++++|.++.+........           
T Consensus       126 ~~riWd~~Gk~~~-------~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-----------  187 (423)
T KOG0313|consen  126 TSRIWDLKGKSIK-------TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-----------  187 (423)
T ss_pred             eeEEEecCCceEE-------EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-----------
Confidence            5566766544332       788999999988884422   3699999999999999987644211100           


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-------------------------CeeeEEEec
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-------------------------GLLRCTYRA  166 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-------------------------~~~~~~~~~  166 (279)
                        ...+|...|.++.-       .+++..+++|+.|..|++|+..+                         +.++..+.+
T Consensus       188 --~~~GHk~~V~sVsv-------~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  188 --VCRGHKRSVDSVSV-------DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             --HhcccccceeEEEe-------cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence              11267778888865       77899999999999999999321                         123334445


Q ss_pred             cCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672          167 YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~  246 (279)
                      |..     +|.++.|++.+..+.++-|.+|+.||+.+++.    ...+     .-...+.++..+| ...+|++|+.|..
T Consensus       259 Ht~-----~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~-----~~~ksl~~i~~~~-~~~Ll~~gssdr~  323 (423)
T KOG0313|consen  259 HTE-----PVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTL-----TTNKSLNCISYSP-LSKLLASGSSDRH  323 (423)
T ss_pred             ccc-----ceeeEEEcCCCceEeecccceEEEEEeecccc----eeee-----ecCcceeEeeccc-ccceeeecCCCCc
Confidence            554     99999999944433356999999999998532    2222     1134689999999 8999999999999


Q ss_pred             EEEEecCCCe---EEEEEeecCCCEEEEEEccCCC
Q 023672          247 SAIYREDNME---LLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       247 i~~wd~~~~~---~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      |++||.|++.   ...++.+|.++|.++.|+|..-
T Consensus       324 irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~  358 (423)
T KOG0313|consen  324 IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE  358 (423)
T ss_pred             eeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence            9999999763   4578999999999999999754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-21  Score=136.27  Aligned_cols=202  Identities=19%  Similarity=0.281  Sum_probs=140.3

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      -..+|.+++|+|.|.+.++|+...+.+|--...-....  ..................+|.+.|++.+|       +|+|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s~~g  101 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------SPCG  101 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcc--cccccccCCCeEEeeeccccCccEEEEEe-------cCcc
Confidence            45679999999999999999999999886543211000  00000111112223344578889999999       7789


Q ss_pred             cEEEEecCCCcEEEEECCCCee-----eEEEeccCccccccceeeEEE--------------------------------
Q 023672          139 CVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAF--------------------------------  181 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~--------------------------------  181 (279)
                      .+|++|+.|.+|++...+...+     -..+..|..     .|..++|                                
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-----tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~  176 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-----TIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF  176 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCC-----ceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence            9999999999999876653221     112222221     2222222                                


Q ss_pred             --------------CCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC---CCceEEEEEccCCCcEEEEEeC
Q 023672          182 --------------NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSY  243 (279)
Q Consensus       182 --------------~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~l~~~~~  243 (279)
                                    +-++-.+++| .|.+|++||++-+    .+..++...+.+.   ...|.+++..| .|.+|++|-.
T Consensus       177 ~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~----~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~  251 (350)
T KOG0641|consen  177 HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN----SCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHA  251 (350)
T ss_pred             eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc----ceeeeccCcccCCCcccceeEEEEECC-CcceeeeccC
Confidence                          2234456666 8899999999874    3344443322222   36799999999 9999999999


Q ss_pred             CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          244 SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       244 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |....+||++.+++++.+..|...|+++.|||...|
T Consensus       252 dssc~lydirg~r~iq~f~phsadir~vrfsp~a~y  287 (350)
T KOG0641|consen  252 DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHY  287 (350)
T ss_pred             CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceE
Confidence            999999999999999999999999999999997654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.9e-21  Score=140.65  Aligned_cols=192  Identities=16%  Similarity=0.230  Sum_probs=146.5

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ......+|.+.|++++.+  +.++|+||.|-+|+|||+.......                 ....|.+.|+++.|.+..
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~~   95 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPPL   95 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCCc
Confidence            344788999999999986  7899999999999999998643321                 345677899999986531


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~  210 (279)
                           ....|++|+.||.|.+|+...-.++..++.|..     .|+.++++|.+++.+ +|.|+.+++||+-++...+..
T Consensus        96 -----S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   96 -----SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             -----chhheeeecCCCcEEEEEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence                 122899999999999999999999999999987     899999999999887 679999999999874322211


Q ss_pred             e----eeccc-------------------------ccCCCC--CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672          211 Y----STLKG-------------------------NKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (279)
Q Consensus       211 ~----~~~~~-------------------------~~~~~~--~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~  259 (279)
                      .    .++..                         .+..-.  ..+.++.|  .++..|++|.+|+.|.+||..+..++.
T Consensus       166 ~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~  243 (362)
T KOG0294|consen  166 NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLT  243 (362)
T ss_pred             ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccce
Confidence            0    00000                         000001  12334444  356789999999999999999999999


Q ss_pred             EEeecCCCEEEEEEc
Q 023672          260 VLHGQEGGVTHVSKL  274 (279)
Q Consensus       260 ~~~~~~~~v~~~~~s  274 (279)
                      .+.+|...|.++.+-
T Consensus       244 ~~~AH~~RVK~i~~~  258 (362)
T KOG0294|consen  244 EFLAHENRVKDIASY  258 (362)
T ss_pred             eeecchhheeeeEEE
Confidence            999999999888743

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.4e-22  Score=143.91  Aligned_cols=228  Identities=17%  Similarity=0.225  Sum_probs=158.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc------cccccCCCC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------ACSLAKDQD  108 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~  108 (279)
                      ++.+||..+....+      .+.+|..+|.+++||+||+.|+|+|.|..|++||+..+.......      .+...+...
T Consensus        46 ~vvI~D~~T~~iar------~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   46 RVVIYDFDTFRIAR------MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR  119 (405)
T ss_pred             cEEEEEccccchhh------hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccC
Confidence            78899999888766      899999999999999999999999999999999999876533221      111111111


Q ss_pred             cccceeeecCCCceEE----------------EEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccc
Q 023672          109 SYEASLVVTEGESVYD----------------FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE  172 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~----------------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  172 (279)
                      +............+..                +...+.+..|.+.|+++++|...|.+.++|..+-+++..++....   
T Consensus       120 n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~---  196 (405)
T KOG1273|consen  120 NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV---  196 (405)
T ss_pred             CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh---
Confidence            1111111111100111                111222445788899999999999999999999999988876651   


Q ss_pred             ccceeeEEECCCCCEEEEe-cCCeEEEEEccCC---CC--ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC
Q 023672          173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP---GR--DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ  245 (279)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~---~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg  245 (279)
                       ..|..+.|+..|++++.- .|..||.|+++.-   ++  ..+....+...  -....-.+++|+. +|.+++.|+. -.
T Consensus       197 -~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv--VNk~~Wk~ccfs~-dgeYv~a~s~~aH  272 (405)
T KOG1273|consen  197 -QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV--VNKLQWKKCCFSG-DGEYVCAGSARAH  272 (405)
T ss_pred             -eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH--HhhhhhhheeecC-CccEEEeccccce
Confidence             278899999999999865 9999999998731   11  11111111100  1123456889999 8888877764 44


Q ss_pred             cEEEEecCCCeEEEEEeecC-CCEEEEEEcc
Q 023672          246 TSAIYREDNMELLYVLHGQE-GGVTHVSKLS  275 (279)
Q Consensus       246 ~i~~wd~~~~~~~~~~~~~~-~~v~~~~~sp  275 (279)
                      .++||....|.++..+.|.. ....++.|+|
T Consensus       273 aLYIWE~~~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  273 ALYIWEKSIGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             eEEEEecCCcceeeeecCCchhheeeccccc
Confidence            59999999999999999877 4566777776

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=3.4e-22  Score=148.76  Aligned_cols=203  Identities=15%  Similarity=0.192  Sum_probs=144.0

Q ss_pred             ccCCCCCceEEEEEccCCC--eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           55 TSSIPNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      ...+|.+.|+.+.-++-++  +.++=+..|.|+||++...-..-..............+. ....|+..=+.++|+|.  
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~-t~~ghk~EGy~LdWSp~--  222 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLF-TFNGHKGEGYGLDWSPI--  222 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceE-EecccCccceeeecccc--
Confidence            4557888899988887554  556667899999999974321111111111111111111 23345567788888763  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeE---EEeccCccccccceeeEEECCCCCEE-EEe-cCCeEEEEEccCCCCc
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC---TYRAYDAVDEITAAFSVAFNPTGTKI-FAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~d~~i~~~d~~~~~~~  207 (279)
                          ....|++|..-+.|++|...++.-..   .+..|.     ..|..++|+|...-+ +++ .|++|+|||+|.+.+ 
T Consensus       223 ----~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-  292 (440)
T KOG0302|consen  223 ----KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-  292 (440)
T ss_pred             ----cccccccCccccceEeeeeccCceeecCccccccc-----cchhhhccCCccCceEEeeecCceEEEEEecCCCc-
Confidence                22357888888899999998875332   233344     389999999986544 444 999999999998422 


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC---CeEEEEEeecCCCEEEEEEccC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ..++.+     ++|.+.|+.+.|+. +-.+|++|+.||+++|||+|+   ++++..++.|..+|+++.|+|.
T Consensus       293 ~~~~~~-----kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  293 KAAVST-----KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             cceeEe-----eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            222222     68889999999999 667999999999999999985   5688999999999999999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=9.2e-22  Score=159.79  Aligned_cols=207  Identities=14%  Similarity=0.128  Sum_probs=163.2

Q ss_pred             eeeEecCCCCccc-ceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTY-HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      ..+.|+......- +.+.. ..++.-...+++++.++.|++.+.|...|+|-+|++..|-......              
T Consensus       423 ~~~tW~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--------------  487 (910)
T KOG1539|consen  423 SAYTWNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--------------  487 (910)
T ss_pred             eEEEEeccCcccccEEecC-ccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc--------------
Confidence            4456666554441 21111 1222244679999999999999999999999999999764322111              


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      -...|.++|..++.       +.-++.+++++.+|.+++||......+..+....      .+.++..+.....++.+ .
T Consensus       488 ~~~ah~~~V~gla~-------D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~------~~~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  488 DSPAHKGEVTGLAV-------DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS------SITGIVYHRVSDLLAIALD  554 (910)
T ss_pred             cCccccCceeEEEe-------cCCCceEEEccCcceEEEEecCCcceeeeeccCC------CcceeeeeehhhhhhhhcC
Confidence            12356778888865       5567789999999999999999988888877665      67889999888888855 8


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS  272 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  272 (279)
                      |-.|+++|..+.        .+...+.+|.+.|++++||| +|.+|++++.|++|++||+.++.++..+. -+.+++++.
T Consensus       555 df~I~vvD~~t~--------kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls  624 (910)
T KOG1539|consen  555 DFSIRVVDVVTR--------KVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLS  624 (910)
T ss_pred             ceeEEEEEchhh--------hhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeE
Confidence            999999999882        34445589999999999999 99999999999999999999999998877 467899999


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      |||+|.|
T Consensus       625 ~SPngD~  631 (910)
T KOG1539|consen  625 FSPNGDF  631 (910)
T ss_pred             ECCCCCE
Confidence            9999965

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=8.1e-22  Score=157.09  Aligned_cols=191  Identities=17%  Similarity=0.277  Sum_probs=157.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      -+.+|.+....++.      ++.||...|.|++...++. +++||.|.++++|.......                   .
T Consensus        82 ~i~v~~~~~~~P~~------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-------------------~  135 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLY------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-------------------S  135 (745)
T ss_pred             eEEEEecCCCCchh------hhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-------------------c
Confidence            44566666665554      8999999999999988887 99999999999998764321                   2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK  194 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~  194 (279)
                      ..+|..+|+.+...|       ++ .+++|+.|.+|++|.-  ++.++++..|..     .|+.+++-+++.++.++.||
T Consensus       136 l~gH~asVWAv~~l~-------e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD-----~VRgL~vl~~~~flScsNDg  200 (745)
T KOG0301|consen  136 LQGHTASVWAVASLP-------EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTD-----CVRGLAVLDDSHFLSCSNDG  200 (745)
T ss_pred             cCCcchheeeeeecC-------CC-cEEeccCcceeeeccC--Cchhhhhccchh-----heeeeEEecCCCeEeecCCc
Confidence            456777888886533       34 8999999999999986  788899999887     99999999999888899999


Q ss_pred             eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       195 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      .|++|++..     ..+...    .+|...++++...+ ++..++++++|+++++|+..  ++.+.+......|+++.+-
T Consensus       201 ~Ir~w~~~g-----e~l~~~----~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L  268 (745)
T KOG0301|consen  201 SIRLWDLDG-----EVLLEM----HGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVL  268 (745)
T ss_pred             eEEEEeccC-----ceeeee----eccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEe
Confidence            999999954     333343    69999999999888 78899999999999999976  7888888666689998887


Q ss_pred             cCCC
Q 023672          275 SSAY  278 (279)
Q Consensus       275 pdg~  278 (279)
                      ++|.
T Consensus       269 ~NgD  272 (745)
T KOG0301|consen  269 LNGD  272 (745)
T ss_pred             eCCC
Confidence            7663

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.2e-21  Score=147.76  Aligned_cols=205  Identities=15%  Similarity=0.198  Sum_probs=155.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+|+..+.+.++      .+.+|.+.|.+++|-.....|++++.|++|++|+++...+..                 .
T Consensus       225 ~v~Iw~~~t~ehv~------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-----------------t  281 (479)
T KOG0299|consen  225 HVQIWDCDTLEHVK------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-----------------T  281 (479)
T ss_pred             eEEEecCcccchhh------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-----------------H
Confidence            55689999988877      689999999999999888899999999999999998654322                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK  194 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~  194 (279)
                      ..+|...|..+.-       ..-++.+-+|+.|+++++|++.. .....+..+..     .+.|++|-.+..++..+.+|
T Consensus       282 lyGHqd~v~~Ida-------L~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~-----sidcv~~In~~HfvsGSdnG  348 (479)
T KOG0299|consen  282 LYGHQDGVLGIDA-------LSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG-----SIDCVAFINDEHFVSGSDNG  348 (479)
T ss_pred             HhCCccceeeech-------hcccceEEeccccceeEEEeccc-cceeeeeCCCC-----CeeeEEEecccceeeccCCc
Confidence            3456667777643       33455677777999999999943 33444555544     78899998776666566999


Q ss_pred             eEEEEEccCCCCceeeeeecccccC-----CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC----eEEEEEeecC
Q 023672          195 SVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQE  265 (279)
Q Consensus       195 ~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~  265 (279)
                      .|.+|++-+ .+++-..........     .+...|++++..| +..++++|+.+|.|++|-+..+    .++..++ -.
T Consensus       349 ~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~  425 (479)
T KOG0299|consen  349 SIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LV  425 (479)
T ss_pred             eEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cc
Confidence            999999987 344332222211111     2234899999999 9999999999999999998876    5666776 67


Q ss_pred             CCEEEEEEccCCC
Q 023672          266 GGVTHVSKLSSAY  278 (279)
Q Consensus       266 ~~v~~~~~spdg~  278 (279)
                      +.|++++|+++|+
T Consensus       426 GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  426 GFVNSLAFSNSGK  438 (479)
T ss_pred             cEEEEEEEccCCC
Confidence            8899999999997

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=155.09  Aligned_cols=191  Identities=14%  Similarity=0.179  Sum_probs=153.6

Q ss_pred             eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEE-ccCCCeEEEeeCCCeEEEEeCCCCcc--ccccccccccCCCC
Q 023672           32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW-SPDGSSFLTSSEDKTLRIFSLPENGI--SYDVNACSLAKDQD  108 (279)
Q Consensus        32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~  108 (279)
                      ....+.+|+......    -+..++..|++.|.|+++ .++...+|+|+-|+.|.|||++++..  ....+        .
T Consensus        93 sDtTVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n--------~  160 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN--------N  160 (735)
T ss_pred             CCceEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc--------c
Confidence            334677888776641    123378889999999999 77888999999999999999997632  11111        1


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                      .....+..++..+|++++-       ++.|..|++|+..+.|++||.++++.+..+++|..     -|.++..++||..+
T Consensus       161 ~t~~sl~sG~k~siYSLA~-------N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-----NVr~ll~~dDGt~~  228 (735)
T KOG0308|consen  161 VTVNSLGSGPKDSIYSLAM-------NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-----NVRVLLVNDDGTRL  228 (735)
T ss_pred             cccccCCCCCccceeeeec-------CCcceEEEecCcccceEEeccccccceeeeecccc-----ceEEEEEcCCCCeE
Confidence            1111223356678888865       67788999999999999999999999999999887     89999999999998


Q ss_pred             EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      +++ .||+|++||+...    +++.++    ..|...|+++..+| +-..+.+|+.||.|..=|+++.
T Consensus       229 ls~sSDgtIrlWdLgqQ----rCl~T~----~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  229 LSASSDGTIRLWDLGQQ----RCLATY----IVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eecCCCceEEeeecccc----ceeeeE----EeccCceEEEeeCC-CcceEEecCCCCcEEecccCCc
Confidence            865 9999999999873    555555    67888899999999 9999999999999999999884

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=7.1e-22  Score=149.78  Aligned_cols=165  Identities=19%  Similarity=0.319  Sum_probs=133.5

Q ss_pred             cCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           56 SSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ..+|+++|..++|+.+- +.||+||.|.+|++||+.+++...                 ...+++..|.++.|+|.    
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-----------------s~~~~~k~Vq~l~wh~~----  297 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-----------------SITHHGKKVQTLEWHPY----  297 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-----------------ehhhcCCceeEEEecCC----
Confidence            45799999999999854 578999999999999999875532                 34578899999999876    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                        ...+|++|+.|++|.+.|++.. ..-..++...      .|..++|.|.....+ ++ .||.|+-+|+|.++++.   
T Consensus       298 --~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v---  366 (463)
T KOG0270|consen  298 --EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV---  366 (463)
T ss_pred             --CceEEEeccccceEEeeeccCccccCceEEecc------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCce---
Confidence              5669999999999999999952 2223333333      788999999875544 66 99999999999876443   


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      .++    .+|.+.|.++++++....+|++++.|+.|++|++....
T Consensus       367 wt~----~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  367 WTL----KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eEE----EeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            344    78999999999999778899999999999999986543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.7e-21  Score=139.68  Aligned_cols=206  Identities=18%  Similarity=0.160  Sum_probs=149.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .++.+|+.++...       .+..|..+|.||.+++....+++||+|++|++||.+.....                  .
T Consensus        76 ~vr~~Dln~~~~~-------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~------------------~  130 (323)
T KOG1036|consen   76 QVRRYDLNTGNED-------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV------------------G  130 (323)
T ss_pred             eEEEEEecCCcce-------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc------------------c
Confidence            4566666666544       57789999999999998888999999999999999852211                  2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d  193 (279)
                      ....++.|+++..         .++.|+.|..+..+.+||+++...........   -.-.+.|+++-|++.-++ ++-|
T Consensus       131 ~~d~~kkVy~~~v---------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~---lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  131 TFDQGKKVYCMDV---------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS---LKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             ccccCceEEEEec---------cCCEEEEeecCceEEEEEcccccchhhhcccc---ceeEEEEEEEecCCCceEEEeec
Confidence            2333457777744         67799999999999999999865433211111   112678999999876555 5599


Q ss_pred             CeEEEEEccCCCCceeeeeeccccc-----CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNK-----EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV  268 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v  268 (279)
                      |.|.+=.++...........++.+.     ...-.+|++++|+| -...|+||+.||.|.+||+.+.+.+..+......|
T Consensus       199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI  277 (323)
T KOG1036|consen  199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSI  277 (323)
T ss_pred             ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCce
Confidence            9999877765311111111121111     11124799999999 78889999999999999999999999998888889


Q ss_pred             EEEEEccCCC
Q 023672          269 THVSKLSSAY  278 (279)
Q Consensus       269 ~~~~~spdg~  278 (279)
                      .+++|+.||.
T Consensus       278 ~slsfs~dG~  287 (323)
T KOG1036|consen  278 SSLSFSMDGS  287 (323)
T ss_pred             EEEEeccCCC
Confidence            9999999984

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5e-21  Score=157.02  Aligned_cols=216  Identities=16%  Similarity=0.227  Sum_probs=154.8

Q ss_pred             CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc-cc-------------cccccCCCCcccceeeecCCC--
Q 023672           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD-VN-------------ACSLAKDQDSYEASLVVTEGE--  120 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~--  120 (279)
                      .+|++..+.++|.|+|++|++++.||.|++|+........+ ..             ........+..+..+.+..+.  
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            47899999999999999999999999999999765421100 00             000001111122222222111  


Q ss_pred             -ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEE
Q 023672          121 -SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV  198 (279)
Q Consensus       121 -~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~  198 (279)
                       -+..+.+....++++.+|.++|.|+.|-.|++.++.+......++.|..     +|.++.|+|.+++|+++ .||.|++
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-----pVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-----PVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-----ceeeeeEcCCCCEEEEEecCceEEE
Confidence             2233333444567799999999999999999999999999999999987     99999999999999966 9999999


Q ss_pred             EEccCCCCceeeeeecccccCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee--cCCCEEEEEEcc
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVSKLS  275 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~sp  275 (279)
                      ||+..+ .....+..+....... ...+..++|+| ++..|+..+.|+.|++|+..++++...+..  +...+..++|+|
T Consensus       165 w~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP  242 (933)
T KOG1274|consen  165 WDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP  242 (933)
T ss_pred             EEcccc-hhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence            999973 2222222221111222 45678899999 555555666799999999999999888874  445699999999


Q ss_pred             CCCC
Q 023672          276 SAYT  279 (279)
Q Consensus       276 dg~~  279 (279)
                      +|+|
T Consensus       243 nG~Y  246 (933)
T KOG1274|consen  243 NGKY  246 (933)
T ss_pred             CCcE
Confidence            9987

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.3e-22  Score=168.32  Aligned_cols=192  Identities=14%  Similarity=0.195  Sum_probs=151.9

Q ss_pred             eccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           54 RTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .....|++.|.++.|++.. ++||+|+.||.|.|||+.+........               .......|.+++|+..  
T Consensus       110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrk--  172 (1049)
T KOG0307|consen  110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRK--  172 (1049)
T ss_pred             hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccchh--
Confidence            3677899999999999955 599999999999999998643211110               1223457899999643  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe-cC--CeEEEEEccCCCCc
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YN--KSVRVFDVHRPGRD  207 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d--~~i~~~d~~~~~~~  207 (279)
                          ..+.|++++.+|.+.|||++..+.+-.+..+...   ..+..+.|+|+.  ++++++ .|  -.|.+||+|....+
T Consensus       173 ----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~---~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  173 ----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR---MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             ----hhHHhhccCCCCCceeccccCCCcccccccCCCc---cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence                4568999999999999999988877776655432   257789999996  334444 33  57999999975444


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .+.+       .+|...|.++.|++.|..+|++++.|+.|.+|+..+++.+..+.....++..+.|+|.
T Consensus       246 ~k~~-------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr  307 (1049)
T KOG0307|consen  246 LKIL-------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR  307 (1049)
T ss_pred             hhhh-------cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence            3332       6899999999999977799999999999999999999999999988889999999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.1e-20  Score=137.68  Aligned_cols=199  Identities=16%  Similarity=0.205  Sum_probs=138.3

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCC--eEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      +...-.+.+||+.+.....      .+..|.+.|+++.|.++..  .|++|+.||.|.+|+........           
T Consensus        59 GssDetI~IYDm~k~~qlg------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~-----------  121 (362)
T KOG0294|consen   59 GSSDETIHIYDMRKRKQLG------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK-----------  121 (362)
T ss_pred             cCCCCcEEEEeccchhhhc------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee-----------
Confidence            3344467788888877765      7778999999999999765  89999999999999998543211           


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-  186 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  186 (279)
                            ..-.|.+.|+.++.       +|.+++.++.+.|+.+++||+-.|+.-..++...      ....+.|+|.|. 
T Consensus       122 ------slK~H~~~Vt~lsi-------HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~  182 (362)
T KOG0294|consen  122 ------SLKAHKGQVTDLSI-------HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDH  182 (362)
T ss_pred             ------eecccccccceeEe-------cCCCceEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCE
Confidence                  22334556888865       7789999999999999999998887554443322      112234444333 


Q ss_pred             --------------------------------------EEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEE
Q 023672          187 --------------------------------------KIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (279)
Q Consensus       187 --------------------------------------~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (279)
                                                            .++ .+.|+.|++||....    .+...+    .+|...|-+
T Consensus       183 F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~----~~~~~~----~AH~~RVK~  254 (362)
T KOG0294|consen  183 FVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD----TPLTEF----LAHENRVKD  254 (362)
T ss_pred             EEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCC----ccceee----ecchhheee
Confidence                                                  333 336666777766641    122222    689999999


Q ss_pred             EEE--ccCCCcEEEEEeCCCcEEEEecCCC-----eEEEEEeecCCCEEEEEEc
Q 023672          228 IAF--SPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       228 ~~~--sp~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s  274 (279)
                      +.+  .| .+.+|++++.||.|++||++..     +++..+.. ...++|+...
T Consensus       255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  255 IASYTNP-EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             eEEEecC-CceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence            984  45 7889999999999999999865     34444442 4456666543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.6e-23  Score=164.41  Aligned_cols=184  Identities=16%  Similarity=0.256  Sum_probs=157.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ....|...|.++..-..++.+++|+.|..+.+|.+......                . -...|..+|.++.|       
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i----------------~-S~~~hespIeSl~f-------   78 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI----------------T-SLTGHESPIESLTF-------   78 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh----------------h-eeeccCCcceeeec-------
Confidence            45568889999998778889999999999999988742110                0 13456678888876       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ++...+|+.|+.+|+|++||++.++.++++.++..     .+.++.|+|-+.+.+.| .|..+++||.+..    .+...
T Consensus        79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----Gc~~~  149 (825)
T KOG0267|consen   79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKK----GCSHT  149 (825)
T ss_pred             CcchhhhcccccCCceeeeehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhcc----Cceee
Confidence            67788999999999999999999999999888886     88899999999999877 9999999999963    23333


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      +    .+|...+..+.|+| +|.+++.|++|..++|||+..|+.+..|..|++.+.++.|+|.
T Consensus       150 ~----~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  150 Y----KSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL  207 (825)
T ss_pred             e----cCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence            3    67899999999999 9999999999999999999999999999999999999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=3.2e-22  Score=148.17  Aligned_cols=183  Identities=17%  Similarity=0.213  Sum_probs=133.7

Q ss_pred             ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+..                 ....|.+.|..+++..    
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----------------~f~AH~G~V~Gi~v~~----  119 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----------------TFKAHEGLVRGICVTQ----  119 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----------------eeecccCceeeEEecc----
Confidence            678999999999999976 789999999999999998644321                 2223334455554411    


Q ss_pred             cCCCCcEEEEecCCCc--------------------------------------EEEEECCCCeeeEEEeccCccccccc
Q 023672          134 SDPTSCVFASTTRDHP--------------------------------------IHLWDATTGLLRCTYRAYDAVDEITA  175 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~--------------------------------------i~i~d~~~~~~~~~~~~~~~~~~~~~  175 (279)
                           ..+++++.|.+                                      |.|||..-..++..+.-...     .
T Consensus       120 -----~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D-----t  189 (433)
T KOG0268|consen  120 -----TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD-----S  189 (433)
T ss_pred             -----cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC-----c
Confidence                 23344444444                                      45555554455555554443     6


Q ss_pred             eeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          176 AFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       176 v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      +.++.|+|....++ ++ .|+.|.|||+++ ..+++.+..        ...-+.++|+| ++..+++|++|..++.||++
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~--------~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVIL--------TMRTNTICWNP-EAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEeccc-CCccceeee--------eccccceecCc-cccceeeccccccceehhhh
Confidence            78999999876555 55 999999999998 444443322        22456799999 99999999999999999999


Q ss_pred             CC-eEEEEEeecCCCEEEEEEccCCC
Q 023672          254 NM-ELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       254 ~~-~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .. .++....+|.+.|.++.|||.|+
T Consensus       260 ~l~~p~~v~~dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  260 NLSRPLNVHKDHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             hhcccchhhcccceeEEEeccCCCcc
Confidence            76 46788899999999999999996

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=4.6e-21  Score=147.69  Aligned_cols=199  Identities=16%  Similarity=0.236  Sum_probs=154.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      -+.+||+....+.      +.+.+|.+.|++|.++-...+||+++..|.|.|..+.++.....                +
T Consensus       102 ~Vkiwdl~~kl~h------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~----------------f  159 (673)
T KOG4378|consen  102 CVKIWDLRAKLIH------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT----------------F  159 (673)
T ss_pred             eeeehhhHHHHHh------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc----------------e
Confidence            5778888844443      37899999999999999999999999999999999987644221                2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEe-ccCccccccceeeEEECCCCCEEE--Ee
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIF--AG  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~--~~  191 (279)
                      ....+..|.-+.|+|.      ...+|.+++.+|.|.+||+....++..+. .|..     +...|+|+|....|+  +|
T Consensus       160 ~~~sgqsvRll~ys~s------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG  228 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPS------KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVG  228 (673)
T ss_pred             ecCCCCeEEEeecccc------cceeeEeeccCCeEEEEeccCCCcccchhhhccC-----CcCcceecCCccceEEEec
Confidence            2333455667777543      23367788999999999998776665443 3333     778999999876555  56


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTH  270 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~  270 (279)
                      .|..|.+||.+. .+...++        ....+...++|++ +|.+|+.|...|.|..||+|.. .++.++..|...|++
T Consensus       229 ~Dkki~~yD~~s-~~s~~~l--------~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~  298 (673)
T KOG4378|consen  229 YDKKINIYDIRS-QASTDRL--------TYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR  298 (673)
T ss_pred             ccceEEEeeccc-cccccee--------eecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence            999999999986 2222222        2245788999999 9999999999999999999954 688999999999999


Q ss_pred             EEEccC
Q 023672          271 VSKLSS  276 (279)
Q Consensus       271 ~~~spd  276 (279)
                      ++|-|.
T Consensus       299 vafq~s  304 (673)
T KOG4378|consen  299 VAFQPS  304 (673)
T ss_pred             EEeeec
Confidence            999875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=5.3e-22  Score=153.07  Aligned_cols=187  Identities=13%  Similarity=0.180  Sum_probs=144.2

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee-cCCCceEEEEeeCccccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  134 (279)
                      ...|..-|.++.++...++++||+. |-|+|||+........             +..+.. ...+.+.++..       
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-------------vsqLdcl~rdnyiRSckL-------  473 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-------------VSQLDCLNRDNYIRSCKL-------  473 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-------------cccccccCcccceeeeEe-------
Confidence            4468888999999999999999996 6799999985422111             111222 23345555544       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEE--EeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                      .|||+.|++|+.-.++.|||+....+.-.  +.....     .++.++.+||.++.+++ .||.|.|||+++        
T Consensus       474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssap-----aCyALa~spDakvcFsccsdGnI~vwDLhn--------  540 (705)
T KOG0639|consen  474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDAKVCFSCCSDGNIAVWDLHN--------  540 (705)
T ss_pred             cCCCceEEeccccceeeeeeccCCCcchhhhcCCcch-----hhhhhhcCCccceeeeeccCCcEEEEEccc--------
Confidence            78999999999999999999987654332  222222     67899999999999966 999999999998        


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .++...+.+|.+.+.||..++ +|..|-+|+-|++|+-||++++..+.... ..+.|.++..+|.|-
T Consensus       541 q~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d  605 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD  605 (705)
T ss_pred             ceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcc
Confidence            244555589999999999999 99999999999999999999998765443 345688888888764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=1.3e-21  Score=151.03  Aligned_cols=206  Identities=18%  Similarity=0.266  Sum_probs=155.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      -+.+||+............ ........|.++.+.|||+.|++|+.-.++.|||+......                  +
T Consensus       441 cVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr------------------i  501 (705)
T KOG0639|consen  441 CVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR------------------I  501 (705)
T ss_pred             eEEEeeccCCCCCCccccc-cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc------------------h
Confidence            4678887654322211111 11224577999999999999999999999999999854221                  0


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ..    ...+-+-.-..++++||.+..++|..||.|.|||+.+...++.+.+|..     .+.||.++++|..|-+| .|
T Consensus       502 ka----eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  502 KA----ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             hh----hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-----CceeEEecCCCceeecCCCc
Confidence            00    1111000111246799999999999999999999999999999999987     88999999999888866 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      .+||.||++.+. ....        ......|.++-++| .+.+|+.|-+++.+.|-... +...+.+..|++-|.++.|
T Consensus       573 ntvRcWDlregr-qlqq--------hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKF  641 (705)
T KOG0639|consen  573 NTVRCWDLREGR-QLQQ--------HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKF  641 (705)
T ss_pred             cceeehhhhhhh-hhhh--------hhhhhhheecccCC-CccceeeecccCcEEEEecC-CccceeecccccEEEEEEe
Confidence            999999999842 1111        13356799999999 99999999999998887754 3445678889999999999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      .+.|++
T Consensus       642 a~cGkw  647 (705)
T KOG0639|consen  642 AYCGKW  647 (705)
T ss_pred             cccCce
Confidence            999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.4e-21  Score=148.15  Aligned_cols=222  Identities=15%  Similarity=0.275  Sum_probs=157.0

Q ss_pred             cccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-------CCCeEEEeeCCCeEEEEeCCCCcccccccc
Q 023672           28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-------DGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (279)
Q Consensus        28 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  100 (279)
                      ........+++|+.....++..+..  .+.   ..-.|++|..       .|+++|.|+.|..|.|||+.=....   .+
T Consensus       146 eddvs~LEvYVyn~~e~nlYvHHD~--ilp---afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v---~P  217 (463)
T KOG0270|consen  146 EDDVSYLEVYVYNEEEENLYVHHDF--ILP---AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAV---LP  217 (463)
T ss_pred             cCCceEEEEEEEcCCCcceeEecce--ecc---CcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccc---cc
Confidence            3345556788888777555432111  111   1235666632       3679999999999999998632110   01


Q ss_pred             ccccCC-------CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccc
Q 023672          101 CSLAKD-------QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI  173 (279)
Q Consensus       101 ~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  173 (279)
                      +..+..       ..+.......+|...|..+.|+-.      ..+.||||+.|.+|++||+.++++..++..+..    
T Consensus       218 ~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k----  287 (463)
T KOG0270|consen  218 CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVDTGKPKSSITHHGK----  287 (463)
T ss_pred             ceeechhhhhhhhhhcccccccccchHHHHHHHhccc------cceeEEecCCCceEEEEEcCCCCcceehhhcCC----
Confidence            111000       001111123356667777777432      345899999999999999999999999997776    


Q ss_pred             cceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          174 TAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       174 ~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                       .|.++.|+|.. .+|++| .|++|.+.|+|.++.....+ .       ..+.|-.++|.|.....++++..||+++-+|
T Consensus       288 -~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k-------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D  358 (463)
T KOG0270|consen  288 -KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-K-------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFD  358 (463)
T ss_pred             -ceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-E-------eccceEEEEecCCCceeEEEecCCceEEeee
Confidence             99999999975 556676 99999999999643322222 2       2457899999997778889999999999999


Q ss_pred             cCCC-eEEEEEeecCCCEEEEEEccC
Q 023672          252 EDNM-ELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       252 ~~~~-~~~~~~~~~~~~v~~~~~spd  276 (279)
                      +|+. +++.+++.|.++|.+|.+++.
T Consensus       359 ~R~~~~~vwt~~AHd~~ISgl~~n~~  384 (463)
T KOG0270|consen  359 IRNPGKPVWTLKAHDDEISGLSVNIQ  384 (463)
T ss_pred             cCCCCCceeEEEeccCCcceEEecCC
Confidence            9976 899999999999999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=140.68  Aligned_cols=218  Identities=14%  Similarity=0.188  Sum_probs=155.4

Q ss_pred             ccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672           29 QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD  108 (279)
Q Consensus        29 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  108 (279)
                      .+.+.-|+.+||.-++++...++.+....-- -+-.+++|+|||.+|++|- ...|++||+.......+......     
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~-taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~-----  200 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEY-TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT-----  200 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhh-hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-----
Confidence            3445558899999998887655543211111 1345899999999998665 67999999954322111111100     


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                          .-.....+-+.+++++|.      +...++.++....+-||.-..+.++..+-.+..     .|+.+.|.++|+.|
T Consensus       201 ----~~k~gq~giisc~a~sP~------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g-----GvThL~~~edGn~l  265 (406)
T KOG2919|consen  201 ----KGKFGQKGIISCFAFSPM------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG-----GVTHLQWCEDGNKL  265 (406)
T ss_pred             ----cccccccceeeeeeccCC------CCcceeeecccceeeeEecCCCCceeeecccCC-----CeeeEEeccCcCee
Confidence                012223445666666554      445899999999999999888888888887776     99999999999999


Q ss_pred             EEe--cCCeEEEEEccCCCCceeeeeecccccCCCC---CceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEe
Q 023672          189 FAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA---GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLH  262 (279)
Q Consensus       189 ~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~  262 (279)
                      ++|  .|..|..||+|....++-.   +    ..|.   ..-.-+...| .+++|++|+.||.|++||+.+ +..+..+.
T Consensus       266 fsGaRk~dkIl~WDiR~~~~pv~~---L----~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~  337 (406)
T KOG2919|consen  266 FSGARKDDKILCWDIRYSRDPVYA---L----ERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTG  337 (406)
T ss_pred             cccccCCCeEEEEeehhccchhhh---h----hhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccc
Confidence            976  7899999999975433322   2    2332   2222456678 899999999999999999998 77778888


Q ss_pred             ecCCCEEEEEEccC
Q 023672          263 GQEGGVTHVSKLSS  276 (279)
Q Consensus       263 ~~~~~v~~~~~spd  276 (279)
                      .+...|++++++|-
T Consensus       338 ~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  338 NYSDTVNGVSLNPI  351 (406)
T ss_pred             cccccccceecCcc
Confidence            88888999998874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=3.9e-21  Score=139.05  Aligned_cols=174  Identities=18%  Similarity=0.331  Sum_probs=139.9

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      -..+|+-.|..+.|-| |.-.+.+++-|.+++|||.++.+..                  ..+.-.+.|++.+|+|-.  
T Consensus        96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a------------------~~F~me~~VYshamSp~a--  155 (397)
T KOG4283|consen   96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA------------------VDFKMEGKVYSHAMSPMA--  155 (397)
T ss_pred             CCccceeeeeeeEEeeecCceeecccccceEEEeecccceee------------------EEeecCceeehhhcChhh--
Confidence            4668999999999999 5568889999999999999975432                  334445678888887642  


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                        -...++|+|..|-.|++.|+.+|.....+.+|..     .|.++.|+|...+++ +| .||.|++||++.....+..+
T Consensus       156 --~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l  228 (397)
T KOG4283|consen  156 --MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVL  228 (397)
T ss_pred             --hcceEEEEecCCCcEEEEeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEe
Confidence              2345889999999999999999999999999997     999999999998877 55 99999999999743222221


Q ss_pred             -------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          212 -------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       212 -------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                             ........+|.+.|..++|+. ++.++++++.|..+++|+..+|+
T Consensus       229 D~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  229 DQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCc
Confidence                   111123368899999999999 89999999999999999998774

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.1e-19  Score=132.19  Aligned_cols=222  Identities=17%  Similarity=0.264  Sum_probs=156.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||.....  ..+.+...-..|.+.|..+.|.+  -|+.+|+++.|+++.||.=.......         ....++.
T Consensus        36 ~vkI~d~~~~s--~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~---------~~~~Wv~  104 (361)
T KOG2445|consen   36 TVKIWDSTSDS--GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA---------HGRRWVR  104 (361)
T ss_pred             cEEEEeccCCC--CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc---------ccceeEE
Confidence            56777753322  23445556778999999999965  78999999999999999864221110         0112222


Q ss_pred             e-eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC--------ccccccceeeEEECC
Q 023672          113 S-LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--------AVDEITAAFSVAFNP  183 (279)
Q Consensus       113 ~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~  183 (279)
                      . ........|++++|.|..     -|-.+|+++.||.||||+.-..-.+.......        ......+..|+.|+|
T Consensus       105 ~ttl~DsrssV~DV~FaP~h-----lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~  179 (361)
T KOG2445|consen  105 RTTLVDSRSSVTDVKFAPKH-----LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP  179 (361)
T ss_pred             EEEeecCCcceeEEEecchh-----cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence            2 334456789999998753     46789999999999999986543222211111        111233678999998


Q ss_pred             C---CCEEEEecCC------eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC---cEEEEEeCCCcEEEEe
Q 023672          184 T---GTKIFAGYNK------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT---GMLAIGSYSQTSAIYR  251 (279)
Q Consensus       184 ~---~~~l~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~l~~~~~dg~i~~wd  251 (279)
                      .   ..+|++|.|.      .++||.....++......++    .+|..+|++++|.|.-|   .+|++++.|| |+||.
T Consensus       180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L----~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~  254 (361)
T KOG2445|consen  180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL----PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK  254 (361)
T ss_pred             ccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc----CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence            6   3677777554      89999998876666666666    59999999999999433   4799999999 99999


Q ss_pred             cCCC--------------------eEEEEEeecCCCEEEEEEccCC
Q 023672          252 EDNM--------------------ELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       252 ~~~~--------------------~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++..                    +.+..+..|++.|+.+.|+-.|
T Consensus       255 v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  255 VKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             EeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            8731                    2456677899999999998655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.4e-20  Score=143.49  Aligned_cols=203  Identities=16%  Similarity=0.241  Sum_probs=154.5

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc-ccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-NACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      +.....|.-.|.||+++|++++.++++.||+|.-|++.++...... ........+......-...|...+.++      
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~------  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL------  208 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE------
Confidence            4467789999999999999999999999999999999988643111 111111101111110111444556665      


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~  210 (279)
                       ++++|+++|++|+.|..|.||+.++.+.++.+..|..     .|.+++|-.....++ ++.|+.|++|++...      
T Consensus       209 -avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------  276 (479)
T KOG0299|consen  209 -AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----AVSSLAFRKGTSELYSASADRSVKVWSIDQL------  276 (479)
T ss_pred             -EEcCCCcEEEecCCCceEEEecCcccchhhccccccc-----ceeeeeeecCccceeeeecCCceEEEehhHh------
Confidence             4589999999999999999999999999999999887     999999988777777 559999999999862      


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                        .+...+.+|.+.|.++.... .+..+.+|+.|+++++|++..- ....+.+|.+.+-+++|-.+.
T Consensus       277 --s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~  339 (479)
T KOG0299|consen  277 --SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE  339 (479)
T ss_pred             --HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc
Confidence              33444479999999998887 7777888889999999999433 334677788888888886553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.7e-20  Score=135.81  Aligned_cols=181  Identities=15%  Similarity=0.270  Sum_probs=140.6

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...                 ..+...|-.+|.+++|       |++|+.|+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~W-------S~dgr~Ll   81 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCW-------SRDGRKLL   81 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEe-------cCCCCEee
Confidence            68999999999999999999999999997542                 1245567789999999       78999999


Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCE-EEEe-cCCeEEEEEccCCCCceeeeeecccccCC
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  220 (279)
                      ++|.|..|.+||+..|.+++.++...      +|+...|+|.... +++. .+..-.+.++..+..  .   .+.....+
T Consensus        82 tsS~D~si~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~---~Lp~d~d~  150 (405)
T KOG1273|consen   82 TSSRDWSIKLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--S---VLPKDDDG  150 (405)
T ss_pred             eecCCceeEEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCce--e---eccCCCcc
Confidence            99999999999999999999998776      8999999997533 3344 666666666664211  1   11111011


Q ss_pred             C-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-CCEEEEEEccCCCC
Q 023672          221 Q-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVSKLSSAYT  279 (279)
Q Consensus       221 ~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~spdg~~  279 (279)
                      . .....+..|.+ .|.++++|...|.+.++|..+.+++..++... ..|..+.|+-.|++
T Consensus       151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~  210 (405)
T KOG1273|consen  151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF  210 (405)
T ss_pred             ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE
Confidence            1 11223346888 99999999999999999999999998888665 68889999888763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=6.3e-21  Score=145.25  Aligned_cols=194  Identities=14%  Similarity=0.187  Sum_probs=146.7

Q ss_pred             ccCCCCCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           55 TSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      ...-+.+.|++++|+|..  +.+|+|..-|.|-+||+.+.+.             +.....+...|+.+|.++.|+|.  
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------d~d~v~~f~~hs~~Vs~l~F~P~--  245 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------DKDGVYLFTPHSGPVSGLKFSPA--  245 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------ccCceEEeccCCccccceEecCC--
Confidence            455688999999999944  5888999999999999963221             11112255678889999999776  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                          +...+++.|.||+|++-|++.+.....+.....   ...+.++.|+.+...++.+ .=|...+||+++++.....+
T Consensus       246 ----n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d---~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~  318 (498)
T KOG4328|consen  246 ----NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD---NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL  318 (498)
T ss_pred             ----ChhheeeeccCceeeeeeecchhhHHHhhcCcc---ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh
Confidence                455899999999999999988754433333211   1267788998887666644 55699999999976555443


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe----EEEEEeecCCCEEEEEEccCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~spdg  277 (279)
                             .-|...|.+++++|....+|++++.|++.+|||+|...    ++-..-.|...|.+..|||+|
T Consensus       319 -------~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  319 -------RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             -------hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence                   45666899999999888999999999999999998642    222333488999999999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.4e-20  Score=139.67  Aligned_cols=204  Identities=17%  Similarity=0.195  Sum_probs=141.1

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc---------cccccccCC---------CCcccceeeecCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD---------VNACSLAKD---------QDSYEASLVVTEGES  121 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~~~~  121 (279)
                      .+.|++|.|+|....|++|+.|++++||.++.......         .....+.+.         ..++........ ..
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~-ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET-AK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc-cc
Confidence            47899999999999999999999999999975432100         000000000         000000000000 00


Q ss_pred             eEEEEe-------eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC
Q 023672          122 VYDFCW-------FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN  193 (279)
Q Consensus       122 v~~~~~-------~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d  193 (279)
                      +..+.-       +-....+++++++|+..+..|.|.+....+++.+..++..+      .|..++|+.+++.|+ +|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG------~v~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG------VVSDFTFSSDSKELLASGGT  365 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc------EEeeEEEecCCcEEEEEcCC
Confidence            000000       00123567888888888888888888888888888888776      789999999998888 5599


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC------CeEEEEEeecCCC
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MELLYVLHGQEGG  267 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~------~~~~~~~~~~~~~  267 (279)
                      |.|.+||++.+    .+...+...  + .-.-+++|.++ ++.+||+|+..|.|.|||..+      .+++..+..-...
T Consensus       366 GeV~v~nl~~~----~~~~rf~D~--G-~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~  437 (514)
T KOG2055|consen  366 GEVYVWNLRQN----SCLHRFVDD--G-SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA  437 (514)
T ss_pred             ceEEEEecCCc----ceEEEEeec--C-ccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence            99999999985    344444321  1 11346788899 899999999999999999653      4677888877889


Q ss_pred             EEEEEEccCCC
Q 023672          268 VTHVSKLSSAY  278 (279)
Q Consensus       268 v~~~~~spdg~  278 (279)
                      |++|.|+||++
T Consensus       438 Itsl~Fn~d~q  448 (514)
T KOG2055|consen  438 ITSLQFNHDAQ  448 (514)
T ss_pred             eeeeeeCcchh
Confidence            99999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.3e-19  Score=128.63  Aligned_cols=198  Identities=17%  Similarity=0.296  Sum_probs=140.8

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc-eeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ...+|.+-|.++.|++.|+++|+|+.|++|+|||.+....              .+.. .-.-.|.+.|..+.|.+    
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~--------------~W~~Ts~Wrah~~Si~rV~WAh----   69 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG--------------TWSCTSSWRAHDGSIWRVVWAH----   69 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC--------------ceEEeeeEEecCCcEEEEEecC----
Confidence            4568999999999999999999999999999999754321              1111 13445778999999933    


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCC---------eeeEEEeccCccccccceeeEEECCC--CCEEEE-ecCCeEEEEEc
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTG---------LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFA-GYNKSVRVFDV  201 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-~~d~~i~~~d~  201 (279)
                       ..-|+.+|+++.|+++.||.-...         ....++.....     .|+.+.|.|.  |-.+++ +.||.+|||+.
T Consensus        70 -PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-----sV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   70 -PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRS-----SVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             -ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCc-----ceeEEEecchhcceEEEEeccCcEEEEEec
Confidence             446899999999999999975211         12233333333     8999999997  556664 49999999998


Q ss_pred             cCCCCc--ee---eeeecccccCCCCCceEEEEEccC--CCcEEEEEeCC-----CcEEEEecCCC----eEEEEEeecC
Q 023672          202 HRPGRD--FE---KYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYS-----QTSAIYREDNM----ELLYVLHGQE  265 (279)
Q Consensus       202 ~~~~~~--~~---~~~~~~~~~~~~~~~v~~~~~sp~--~~~~l~~~~~d-----g~i~~wd~~~~----~~~~~~~~~~  265 (279)
                      -.+...  ..   .++.+......+..+..|+.|+|.  ...+|+.|+.+     +.++||....+    ..+.++.+|.
T Consensus       144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence            653211  11   111111222456778889999982  24578888766     36888876533    3567888999


Q ss_pred             CCEEEEEEccC
Q 023672          266 GGVTHVSKLSS  276 (279)
Q Consensus       266 ~~v~~~~~spd  276 (279)
                      ++|++++|.|+
T Consensus       224 dpI~di~wAPn  234 (361)
T KOG2445|consen  224 DPIRDISWAPN  234 (361)
T ss_pred             Ccceeeeeccc
Confidence            99999999996

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=147.81  Aligned_cols=184  Identities=17%  Similarity=0.293  Sum_probs=140.9

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      -+-++++++|+.+|+++|.||.|-.|++-++......                 ....+|..+|.++.|       +|++
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-----------------~~lrgh~apVl~l~~-------~p~~  150 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-----------------KVLRGHDAPVLQLSY-------DPKG  150 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccchh-----------------eeecccCCceeeeeE-------cCCC
Confidence            3456899999999999999999999999998754321                 144567789999987       7789


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCcc---ccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeec
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      .+||+.+.||.|++||+.++.+...+..-...   .....+..++|+|+|..++ .+.|+.|++|+.......+    .+
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f----~L  226 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF----KL  226 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe----ee
Confidence            99999999999999999998877666543221   1123567899999965554 6799999999998742222    22


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ..  ..+...+..+.|+| +|.+||+++.||.|.|||+.+-+.    ......|.+++|.|++
T Consensus       227 r~--~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  227 RD--KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             cc--cccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCC
Confidence            11  23344599999999 999999999999999999988222    2234578999999875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1.3e-19  Score=135.88  Aligned_cols=172  Identities=22%  Similarity=0.355  Sum_probs=131.7

Q ss_pred             eeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           53 FRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      +....||++.|..++|+| +...||+||.|.+|.||++..+.+........          ....+|...|..+.|+|. 
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepv----------v~L~gH~rrVg~V~wHPt-  142 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPV----------VELYGHQRRVGLVQWHPT-  142 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccce----------EEEeecceeEEEEeeccc-
Confidence            347789999999999999 66789999999999999998776544332221          244677889999999886 


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                           ..+.|++++.|.+|.+||+.+|+.+.++. |..     .|++++|+.+|.++++. .|..|+|||.+++ ..   
T Consensus       143 -----A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd-----~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~---  207 (472)
T KOG0303|consen  143 -----APNVLLSAGSDNTVSIWNVGTGEALITLD-HPD-----MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TV---  207 (472)
T ss_pred             -----chhhHhhccCCceEEEEeccCCceeeecC-CCC-----eEEEEEeccCCceeeeecccceeEEEcCCCC-cE---
Confidence                 34589999999999999999999888877 444     89999999999999954 9999999999984 22   


Q ss_pred             eeecccccCCCCC-ceEEEEEccCCCcEEEEEe---CCCcEEEEecCCC
Q 023672          211 YSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNM  255 (279)
Q Consensus       211 ~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~~~  255 (279)
                      ...-    .+|.+ ....+.|-. ++.++.+|-   .+..+-|||..+.
T Consensus       208 v~e~----~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  208 VSEG----VAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             eeec----ccccCCCcceeEEec-cCceeeeccccccccceeccCcccc
Confidence            2222    24433 344566777 677555553   4667999987654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=5.9e-19  Score=136.38  Aligned_cols=207  Identities=17%  Similarity=0.255  Sum_probs=146.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce-
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS-  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-  113 (279)
                      .+.+|+..+.+...      ...+|.+.|.++....+|.+| +|+.|..|..||-.-.+. .+...    +.....+.. 
T Consensus       268 ~i~Iw~~~~~~~~k------~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~-r~~el----Pe~~G~iRtv  335 (626)
T KOG2106|consen  268 NILIWSKGTNRISK------QVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKL-RETEL----PEQFGPIRTV  335 (626)
T ss_pred             eEEEEeCCCceEEe------EeeecCCceEEEEEecCccEe-ecCccceEEecccccccc-ccccC----chhcCCeeEE
Confidence            56788886666544      344899999999999999755 599999999999332111 11100    001111111 


Q ss_pred             ---------------------------eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec
Q 023672          114 ---------------------------LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA  166 (279)
Q Consensus       114 ---------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~  166 (279)
                                                 ....|+...+.+       +.+|+...+++++.|+.+++|+  ..++..+...
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl-------a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~  406 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL-------ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII  406 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE-------EcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence                                       122233333333       5578888999999999999999  5566666555


Q ss_pred             cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                      ..      ++.|+.|+|.| .++.| ..|...+.|.++.     .+.++.   .. ..++++++|+| +|.+||.|+.|+
T Consensus       407 ~d------~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-----~lv~~~---~d-~~~ls~v~ysp-~G~~lAvgs~d~  469 (626)
T KOG2106|consen  407 ED------PAECADFHPSG-VVAVGTATGRWFVLDTETQ-----DLVTIH---TD-NEQLSVVRYSP-DGAFLAVGSHDN  469 (626)
T ss_pred             cC------ceeEeeccCcc-eEEEeeccceEEEEecccc-----eeEEEE---ec-CCceEEEEEcC-CCCEEEEecCCC
Confidence            54      77899999999 77777 8999999999872     222221   22 67899999999 999999999999


Q ss_pred             cEEEEecCCC-eEEEEEee-cCCCEEEEEEccCCCC
Q 023672          246 TSAIYREDNM-ELLYVLHG-QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       246 ~i~~wd~~~~-~~~~~~~~-~~~~v~~~~~spdg~~  279 (279)
                      .|+||.+..+ ........ +..+|+.+.||+|++|
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~  505 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF  505 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence            9999998754 33333332 3479999999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=2.7e-18  Score=133.95  Aligned_cols=229  Identities=14%  Similarity=0.123  Sum_probs=141.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCcccccccc----ccccCC---
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNA----CSLAKD---  106 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~---  106 (279)
                      .+.+||+.+++...      .+..| ..+.+++|+|+++.+ ++++.++.|++||..+++.......    ......   
T Consensus        12 ~v~~~d~~t~~~~~------~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g   84 (300)
T TIGR03866        12 TISVIDTATLEVTR------TFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG   84 (300)
T ss_pred             EEEEEECCCCceEE------EEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence            67889988877654      23333 336789999999876 5677899999999987654321110    000000   


Q ss_pred             --------CCcccceeeecCCCceEEEE--eeCcccccCCCCcEEEEecCCC-cEEEEECCCCeeeEEEeccCccccccc
Q 023672          107 --------QDSYEASLVVTEGESVYDFC--WFPHMSASDPTSCVFASTTRDH-PIHLWDATTGLLRCTYRAYDAVDEITA  175 (279)
Q Consensus       107 --------~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~s~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~  175 (279)
                              .+..+..+.......+..+.  ..|..++++|++.++++++.++ .+.+||.++++....+....      .
T Consensus        85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~  158 (300)
T TIGR03866        85 KILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ------R  158 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC------C
Confidence                    01111111111111122111  1245567889999998888765 46678988877665543322      4


Q ss_pred             eeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEec
Q 023672          176 AFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYRE  252 (279)
Q Consensus       176 v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~  252 (279)
                      +.+++|+|+++.++ ++ .++.|++||++++ +....+................++|+| ++.++ ++.+.++.+.+||+
T Consensus       159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       159 PRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence            56799999999886 45 6899999999874 222211100000000112345788999 77664 44455778999999


Q ss_pred             CCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          253 DNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       253 ~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ++++.+..+. +...+.+++|+|+|++
T Consensus       237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~  262 (300)
T TIGR03866       237 KTYEVLDYLL-VGQRVWQLAFTPDEKY  262 (300)
T ss_pred             CCCcEEEEEE-eCCCcceEEECCCCCE
Confidence            9988776654 4457899999999973

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=8.5e-20  Score=133.62  Aligned_cols=185  Identities=16%  Similarity=0.255  Sum_probs=147.8

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..+.+|.+.|.+..|-..|+.++++++|.+..+||++++....                 ...+|...++.++-      
T Consensus       266 ~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-----------------~LtGHd~ELtHcst------  322 (481)
T KOG0300|consen  266 MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-----------------ILTGHDSELTHCST------  322 (481)
T ss_pred             eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec-----------------cccCcchhcccccc------
Confidence            3688999999999999999999999999999999999875532                 22345555655544      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                       +|..+++++++.|.+.++||.+.. ..+..|.+|..     .|++..|..+.+.+..+.|.+|++||+++...++..+.
T Consensus       323 -HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-----tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR  396 (481)
T KOG0300|consen  323 -HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-----TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR  396 (481)
T ss_pred             -CCcceEEEEeccCceeEeccchhhcceeeeeccccc-----ceeEEEEecCCceeecCCCceEEEeeeccccCcceeee
Confidence             677889999999999999999853 45677888877     89999999887665556999999999998655544332


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE----EEEEeecCCCEEEEEEccC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~spd  276 (279)
                              -..+++.++.+. ++.+++.--.+..|++||+....+    ...-++|...|.+++|..+
T Consensus       397 --------tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  397 --------TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             --------cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence                    246789999999 888999999999999999965442    2244578889999999854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=3.3e-19  Score=142.47  Aligned_cols=206  Identities=12%  Similarity=0.193  Sum_probs=154.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      ++++||...+.++.      +++||.+.|.|++|+.||+++|+|+.|..|.+|.-.-...                   +
T Consensus        34 rlliyD~ndG~llq------tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-------------------L   88 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQ------PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-------------------L   88 (1081)
T ss_pred             EEEEEeCCCccccc------ccccccceEEEEEEccCCceeccCCCceeEEEecccccce-------------------e
Confidence            67899999998887      8999999999999999999999999999999998653322                   3


Q ss_pred             eecCCCceEEEEeeCc--------------------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeE
Q 023672          115 VVTEGESVYDFCWFPH--------------------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRC  162 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~--------------------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~  162 (279)
                      ...|+..|.++.|+|-                                +.++..||++++.|-.+|+|.+-+- +++...
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~  167 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV  167 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence            4455556666666552                                3456889999999999999998763 455444


Q ss_pred             EEeccCccccccceeeEEECCCC-----CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc
Q 023672          163 TYRAYDAVDEITAAFSVAFNPTG-----TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (279)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  236 (279)
                      .+..++  +...+|++++|+|..     ..+++. -..++.+|.+..  .....-       ..-.-...|+.+.| +|.
T Consensus       168 ~I~Rpg--g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~-------r~L~FdP~CisYf~-NGE  235 (1081)
T KOG1538|consen  168 KIERPG--GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKD-------RALNFDPCCISYFT-NGE  235 (1081)
T ss_pred             EEeCCC--CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeeccc-------ccCCCCchhheecc-CCc
Confidence            444322  233489999999973     234433 566666666653  111111       22234567899999 999


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +++.|+.|+.+.+|- +.|-.+.++...+.+|+.++..|+|++
T Consensus       236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCce
Confidence            999999999999996 778888888878889999999999985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=9.3e-20  Score=131.53  Aligned_cols=200  Identities=17%  Similarity=0.183  Sum_probs=145.9

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCC-------CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEE
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSED-------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC  126 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  126 (279)
                      .+..|.+.|..++-+| +.+.|+|+-.+       -.+.||.+.+........       .-..+..+...+-+.|.++.
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~-------tlE~v~~Ldteavg~i~cve  130 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS-------TLECVASLDTEAVGKINCVE  130 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc-------hhhHhhcCCHHHhCceeeEE
Confidence            5667889999999999 55566665442       236799997643221111       01122334433444888998


Q ss_pred             eeCcccccCCCCcEEEEecCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECC--CCCEEEEecCCeEEEEEccC
Q 023672          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~~i~~~d~~~  203 (279)
                      |       .|++..+++-. |..|.+|++..+.. +..+.......+....++-+|+|  +++.+++..|+++..||+|+
T Consensus       131 w-------~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT  202 (370)
T KOG1007|consen  131 W-------EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT  202 (370)
T ss_pred             E-------cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence            8       45677787766 88899999987755 55555444433344678889999  68888888999999999998


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEeecCCCEEEEEEccC
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .    .+...+.   .+|...|..+.|+|+...+|++|+.||.|+|||.|. ..++..+.+|..+|+++.|+|.
T Consensus       203 ~----~~~~sI~---dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  203 M----KKNNSIE---DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             h----hhhcchh---hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence            4    2222232   678889999999996667899999999999999985 4688999999999999999983

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=2.5e-19  Score=129.38  Aligned_cols=188  Identities=19%  Similarity=0.311  Sum_probs=139.7

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .+-+.|.|+.|.|++..+++-. |..|.+|++.++......  ..         ......+....++-.|+|+     .+
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vae--v~---------ss~s~e~~~~ftsg~WspH-----Hd  183 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE--VL---------SSESAEMRHSFTSGAWSPH-----HD  183 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhee--ec---------ccccccccceecccccCCC-----Cc
Confidence            4557899999999999998776 789999999876432110  00         0011123345666778763     37


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEec-cCccccccceeeEEECCCCCEEE-E-ecCCeEEEEEccCCCCceeeeeec
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      ++.+++.+ |+++..||+++.+....+.. |..     .|..+.|+|+-++++ + |.||.|++||.|....+...   +
T Consensus       184 gnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq-----~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e---l  254 (370)
T KOG1007|consen  184 GNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ-----RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE---L  254 (370)
T ss_pred             cceEEEeC-CCcEEEEEccchhhhcchhhhhcc-----eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc---c
Confidence            77777665 88999999998877666553 333     789999999976655 4 49999999999985443332   2


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----------------------------eEEEEEeecC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------------------------ELLYVLHGQE  265 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----------------------------~~~~~~~~~~  265 (279)
                          .+|...|.++.|+|...+++++|+.|..|.+|...+-                             ..+.++..|+
T Consensus       255 ----~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE  330 (370)
T KOG1007|consen  255 ----PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE  330 (370)
T ss_pred             ----CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence                7999999999999988889999999999999965321                             1345778899


Q ss_pred             CCEEEEEEcc
Q 023672          266 GGVTHVSKLS  275 (279)
Q Consensus       266 ~~v~~~~~sp  275 (279)
                      +.|.+++||.
T Consensus       331 DSVY~~aWSs  340 (370)
T KOG1007|consen  331 DSVYALAWSS  340 (370)
T ss_pred             cceEEEeecc
Confidence            9999999985

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=8.9e-19  Score=127.42  Aligned_cols=179  Identities=18%  Similarity=0.305  Sum_probs=133.9

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ......+.|+.|.|+|.++.|+++++||++++||+.....                  .....++.++.+++|.      
T Consensus         8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------------------~~~~~~~~plL~c~F~------   63 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------------------KLKFKHGAPLLDCAFA------   63 (323)
T ss_pred             cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------------------hhheecCCceeeeecc------
Confidence            3445678899999999999999999999999999986422                  2456788899999984      


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                        +...+++|+.||.|+.+|+.++..... ..|..     ++.|+.+++....+++| -|++|++||.+..    .....
T Consensus        64 --d~~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~-----~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~  131 (323)
T KOG1036|consen   64 --DESTIVTGGLDGQVRRYDLNTGNEDQI-GTHDE-----GIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGT  131 (323)
T ss_pred             --CCceEEEeccCceEEEEEecCCcceee-ccCCC-----ceEEEEeeccCCeEEEcccCccEEEEecccc----ccccc
Confidence              345789999999999999998875443 34444     89999999876666655 9999999999962    11111


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe--ecCCCEEEEEEccCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVSKLSSA  277 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~spdg  277 (279)
                      +     .....|.++..   .+..|+.|+.|..+.+||+++........  ...-.++++++-|++
T Consensus       132 ~-----d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~  189 (323)
T KOG1036|consen  132 F-----DQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG  189 (323)
T ss_pred             c-----ccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence            1     22236776665   56789999999999999999876443222  123467888888843

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.84  E-value=1.3e-20  Score=141.89  Aligned_cols=184  Identities=10%  Similarity=0.188  Sum_probs=149.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+..|.+.|..+.|-++...|++|+.|..|++|+....+...              . ....+..++|+.+.|       
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--------------~-~tLaGs~g~it~~d~-------  227 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--------------I-STLAGSLGNITSIDF-------  227 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh--------------h-hhhhccCCCcceeee-------
Confidence            678899999999999998899999999999999998654210              0 022344467888866       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      .+++.++++++.|+.+++|++.+.+...++.+|..     .|+++.|......+++| .|.+|++||+...    .+..+
T Consensus       228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~----~C~kt  298 (459)
T KOG0288|consen  228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD-----KVTAAKFKLSHSRVVSGSADRTIKLWDLQKA----YCSKT  298 (459)
T ss_pred             cCCCceEEeecCCCceeeeeccchhhhhhhccccc-----ceeeehhhccccceeeccccchhhhhhhhhh----heecc
Confidence            77899999999999999999999999999999887     99999998877667766 9999999999873    33323


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +     -....+..|+.++   ..+++|..|++|++||.++..+....+.+. .|+++..+++|.
T Consensus       299 ~-----l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~  354 (459)
T KOG0288|consen  299 V-----LPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL  354 (459)
T ss_pred             c-----cccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe
Confidence            2     1123466666654   678899999999999999999999998765 899999999885

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=9.4e-18  Score=130.88  Aligned_cols=223  Identities=12%  Similarity=0.082  Sum_probs=139.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE-eeCCCeEEEEeCCCCcccccccc----ccccCCCCc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT-SSEDKTLRIFSLPENGISYDVNA----CSLAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~  109 (279)
                      .+++||..+++...      .+..+.. +..++|+|+++.+++ ++.|+.|++||+.+.........    .......+.
T Consensus        54 ~v~~~d~~~~~~~~------~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg  126 (300)
T TIGR03866        54 TIQVIDLATGEVIG------TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG  126 (300)
T ss_pred             eEEEEECCCCcEEE------eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC
Confidence            46678877766543      2333333 567899999997765 45689999999987653221110    000000111


Q ss_pred             -cc----------ceeeecCCCceEE--EEeeCcccccCCCCcEEEE-ecCCCcEEEEECCCCeeeEEEeccCcc--ccc
Q 023672          110 -YE----------ASLVVTEGESVYD--FCWFPHMSASDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAV--DEI  173 (279)
Q Consensus       110 -~~----------~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~  173 (279)
                       ..          ..+.......+..  ....|..++++|+++.++. +..++.|++||+++++.+..+......  ...
T Consensus       127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       127 KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA  206 (300)
T ss_pred             CEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence             00          0001100101111  1123445678999998854 456899999999998877666532110  001


Q ss_pred             cceeeEEECCCCCEEEE--ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEE
Q 023672          174 TAAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIY  250 (279)
Q Consensus       174 ~~v~~~~~~~~~~~l~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~w  250 (279)
                      .....++|+|+++++++  +.++.+.+||+++. +..   ..+     .+...+.+++|+| ++.+|+++ +.+|.|.+|
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~---~~~-----~~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVL---DYL-----LVGQRVWQLAFTP-DEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEE---EEE-----EeCCCcceEEECC-CCCEEEEEcCCCCeEEEE
Confidence            13457899999998663  36778999999863 221   111     1234688999999 78888775 568999999


Q ss_pred             ecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          251 REDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      |+++++++..++.. ..+++++|+|
T Consensus       277 d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       277 DVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             ECCCCcEEEEEEcc-cccceeEeCC
Confidence            99999999999854 5569999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1e-19  Score=143.22  Aligned_cols=215  Identities=18%  Similarity=0.299  Sum_probs=154.2

Q ss_pred             cCCCCccccee--eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc---------------cc
Q 023672           40 DVPPHRTYHFY--NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA---------------CS  102 (279)
Q Consensus        40 d~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------------~~  102 (279)
                      ++++.+.++.+  .+...+.||++.|.||+..|.|.+|++|+.||+|+||.+.++.+......               +.
T Consensus       378 kLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~v  457 (733)
T KOG0650|consen  378 KLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCV  457 (733)
T ss_pred             cCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCcee
Confidence            44555544433  34457889999999999999999999999999999999999876211000               00


Q ss_pred             cc----------------------------CC---C----------------CcccceeeecCCCceEEEEeeCcccccC
Q 023672          103 LA----------------------------KD---Q----------------DSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus       103 ~~----------------------------~~---~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ++                            ..   .                ......+...+..+|..+.|       +
T Consensus       458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW-------H  530 (733)
T KOG0650|consen  458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW-------H  530 (733)
T ss_pred             EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee-------e
Confidence            00                            00   0                00001233344445555555       7


Q ss_pred             CCCcEEEEecCC---CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          136 PTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       136 ~~~~~l~s~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      ..|.+|++...+   ..|.|+++........|.....     .|.++.|+|...+++++....|++||+...        
T Consensus       531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG-----~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq--------  597 (733)
T KOG0650|consen  531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-----LVQRVKFHPSKPYLFVATQRSVRIYDLSKQ--------  597 (733)
T ss_pred             cCCceEEEeccCCCcceEEEEecccccccCchhhcCC-----ceeEEEecCCCceEEEEeccceEEEehhHH--------
Confidence            789999987654   4688999887766655544333     788999999999999998899999999862        


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEEcc
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~sp  275 (279)
                      .+...+......|.+++.+| +|.-|+.|+.|+.+..+|+.-+ ++..++..|...+++++||+
T Consensus       598 elvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~  660 (733)
T KOG0650|consen  598 ELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK  660 (733)
T ss_pred             HHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc
Confidence            12111123355799999999 9999999999999999999744 67788888999999999885

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.4e-18  Score=132.83  Aligned_cols=180  Identities=13%  Similarity=0.179  Sum_probs=143.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .+.|.|++-+|+|.+|+.|+..|.|++|.+.+|.+..                 +...|-.+|+++.|       +-|+.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-----------------v~~aHYQ~ITcL~f-------s~dgs  136 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-----------------VLSAHYQSITCLKF-------SDDGS  136 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH-----------------HHHhhccceeEEEE-------eCCCc
Confidence            4679999999999999999899999999999986643                 23456678999977       77999


Q ss_pred             EEEEecCCCcEEEEECCC---------CeeeEEEeccCccccccceeeEEECCCC--CEEE-EecCCeEEEEEccCCCCc
Q 023672          140 VFASTTRDHPIHLWDATT---------GLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIF-AGYNKSVRVFDVHRPGRD  207 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~-~~~d~~i~~~d~~~~~~~  207 (279)
                      +|++|+.||.|.+|.+.+         -++...+..|.-     +|+++...+.|  ..++ ++.|.++++||+..+   
T Consensus       137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---  208 (476)
T KOG0646|consen  137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-----SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---  208 (476)
T ss_pred             EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-----eeEEEEecCCCccceEEEecCCceEEEEEeccc---
Confidence            999999999999998742         245566666665     89998887653  4455 669999999999985   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC----------------eEEEEEeecCC--CEE
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----------------ELLYVLHGQEG--GVT  269 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~----------------~~~~~~~~~~~--~v~  269 (279)
                       ..+.++     .....+.+++.+| .+..++.|+++|.|.+.++.+.                ..+..+.+|.+  .|+
T Consensus       209 -~LLlti-----~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  209 -VLLLTI-----TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             -eeeEEE-----ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence             333232     2345799999999 9999999999999998887432                24567788988  999


Q ss_pred             EEEEccCCC
Q 023672          270 HVSKLSSAY  278 (279)
Q Consensus       270 ~~~~spdg~  278 (279)
                      +++.+-||.
T Consensus       282 cLais~Dgt  290 (476)
T KOG0646|consen  282 CLAISTDGT  290 (476)
T ss_pred             EEEEecCcc
Confidence            999999984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.6e-19  Score=133.93  Aligned_cols=184  Identities=22%  Similarity=0.274  Sum_probs=136.3

Q ss_pred             EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  143 (279)
                      .+++|+++|..|++|+.||+++||++.......                 ....|...|.++.|       +|||++|++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-----------------~e~~~~~eV~DL~F-------S~dgk~las  203 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-----------------EEIAHHAEVKDLDF-------SPDGKFLAS  203 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh-----------------hhHhhcCcccccee-------CCCCcEEEE
Confidence            789999999999999999999999977542211                 23445668888866       889999999


Q ss_pred             ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC---C-EEEEe--cCCeEEEEEccCCCCceeeeeecccc
Q 023672          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---T-KIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       144 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      .+.| ..+||+++++..+........   ......+.|+.++   . ++++.  ..+.|+.||+...... ... .....
T Consensus       204 ig~d-~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l-~~~~~  277 (398)
T KOG0771|consen  204 IGAD-SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL-RLRKK  277 (398)
T ss_pred             ecCC-ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc-chhhh
Confidence            9999 899999999976665543221   1245678888776   2 23333  5677888887653221 111 11111


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~~  279 (279)
                       ......|.+++.++ +|.+++.|+.||.|.|++..+.+.++.++ .|..-|+++.|+||.++
T Consensus       278 -~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  278 -IKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             -hhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence             12233699999999 99999999999999999999998887665 58999999999999875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=4.2e-19  Score=133.57  Aligned_cols=163  Identities=14%  Similarity=0.217  Sum_probs=116.4

Q ss_pred             hcccceeeeeeEecCCCCcccc---eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672           27 ENQQEYTWPLIRFDVPPHRTYH---FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL  103 (279)
Q Consensus        27 ~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  103 (279)
                      .+.......+++|.+.....-.   .......+..|..+|+++.|+|+|..||+|+.+|.|.+|....-....... +..
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~-e~~  107 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT-EAD  107 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc-hhh
Confidence            3344445566666655444333   334445789999999999999999999999999999999876421110000 000


Q ss_pred             cCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672          104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP  183 (279)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (279)
                      .....-.+......|...++.++|       +|++.++++++.|..+++||+..|+....+..|..     .+..++|.|
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~W-------s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-----yvqgvawDp  175 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAW-------SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-----YVQGVAWDP  175 (434)
T ss_pred             hCccceEEEEEecccccchhhhhc-------cCCCceeeeeeccceEEEEEeccceeEeecccccc-----ccceeecch
Confidence            001111223344557789999988       77899999999999999999999999999988887     889999999


Q ss_pred             CCCEEEE-ecCCeEEEEEcc
Q 023672          184 TGTKIFA-GYNKSVRVFDVH  202 (279)
Q Consensus       184 ~~~~l~~-~~d~~i~~~d~~  202 (279)
                      -++++++ +.|...+.+.+.
T Consensus       176 l~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  176 LNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             hhhhhhhhccCcccceeeee
Confidence            9888884 466655555554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=5.8e-19  Score=139.86  Aligned_cols=181  Identities=18%  Similarity=0.286  Sum_probs=123.3

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +....+|.++|..+.|.|....|++++.|.++++||+.+.++....               +..+|...|.++||.|.  
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~---------------~~~GH~~SvkS~cf~~~--  155 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR---------------LNLGHTGSVKSECFMPT--  155 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce---------------eecccccccchhhhccC--
Confidence            3467789999999999996678999999999999999976553211               45678889999999775  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeee-------EEEec---------------cCccccccceee---EEECCCCCE
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLR-------CTYRA---------------YDAVDEITAAFS---VAFNPTGTK  187 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~-------~~~~~---------------~~~~~~~~~v~~---~~~~~~~~~  187 (279)
                          +...|++|+.||.|.|||++-...-       .....               +....+...|.+   +.+..|...
T Consensus       156 ----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  156 ----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             ----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence                4558999999999999999743200       00000               000111112333   445556667


Q ss_pred             EE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCC---CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          188 IF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       188 l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      |+ +| .|+.|+|||+++.....+.-..-...+..|   ...+.++.... .|.+|++.+.|+.|++||+++-
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEecccc
Confidence            77 66 699999999998543332211111111222   34577888877 6777777777999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.6e-18  Score=136.19  Aligned_cols=198  Identities=17%  Similarity=0.214  Sum_probs=137.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc---------
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH---------  130 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------  130 (279)
                      ...|.+|||+.+.+.||.+-.||.|.||++..+-....               .+..+....|..++|.+.         
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~---------------vi~g~~drsIE~L~W~e~~RLFS~g~s   89 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP---------------VIHGPEDRSIESLAWAEGGRLFSSGLS   89 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE---------------EEecCCCCceeeEEEccCCeEEeecCC
Confidence            45699999999999999999999999999986432111               122333345555555321         


Q ss_pred             -------------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672          131 -------------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       131 -------------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                                               +++.+|.+..++.|+.||.+..++...++..........   .+.+.+++|+|++
T Consensus        90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq---~sRvLslsw~~~~  166 (691)
T KOG2048|consen   90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ---KSRVLSLSWNPTG  166 (691)
T ss_pred             ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc---cceEEEEEecCCc
Confidence                                     234456666677777777666666655544433322221   1278999999999


Q ss_pred             CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ..+++| .||.|++||...+.......+.+....++...-|+++.|-. + ..|++|...|+|.+||...+.++..+..|
T Consensus       167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-D-STIASGDSAGTVTFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-c-CcEEEecCCceEEEEcccCcchhhhhhhh
Confidence            999977 99999999999853222111112222122344577777765 4 47999999999999999999999999999


Q ss_pred             CCCEEEEEEccCC
Q 023672          265 EGGVTHVSKLSSA  277 (279)
Q Consensus       265 ~~~v~~~~~spdg  277 (279)
                      ...|.+|+..+++
T Consensus       245 ~adVl~Lav~~~~  257 (691)
T KOG2048|consen  245 DADVLALAVADNE  257 (691)
T ss_pred             hcceeEEEEcCCC
Confidence            9999999998875

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=1.7e-18  Score=125.69  Aligned_cols=171  Identities=19%  Similarity=0.345  Sum_probs=126.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|++.....+..    +....|.++|.+++|+.||..+++|+.|+.+++||+.+++..                  .
T Consensus        51 tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~------------------~  108 (347)
T KOG0647|consen   51 TVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS------------------Q  108 (347)
T ss_pred             ceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee------------------e
Confidence            677888766422211    356679999999999999999999999999999999987542                  3


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc------------------------
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------  170 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------  170 (279)
                      ...|..+|..+.|-+.     .....|++||.|.+|+.||.+...++.++..++..                        
T Consensus       109 v~~Hd~pvkt~~wv~~-----~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  109 VAAHDAPVKTCHWVPG-----MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             eeecccceeEEEEecC-----CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence            4567789999988553     23558899999999999999876655443222110                        


Q ss_pred             -----------------------------------------------------------------ccccceeeEEECCCC
Q 023672          171 -----------------------------------------------------------------DEITAAFSVAFNPTG  185 (279)
Q Consensus       171 -----------------------------------------------------------------~~~~~v~~~~~~~~~  185 (279)
                                                                                       +....|.+|+|+|..
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence                                                                             113467889999987


Q ss_pred             CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672          186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (279)
Q Consensus       186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~  241 (279)
                      ..|+ +|.||++.+||-...    ..+..    .+.|..+|++++|+. +|.+++.+
T Consensus       264 gtlvTaGsDGtf~FWDkdar----~kLk~----s~~~~qpItcc~fn~-~G~ifaYA  311 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDAR----TKLKT----SETHPQPITCCSFNR-NGSIFAYA  311 (347)
T ss_pred             ceEEEecCCceEEEecchhh----hhhhc----cCcCCCccceeEecC-CCCEEEEE
Confidence            6666 679999999998763    11112    257788999999999 88887765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=4.1e-19  Score=140.72  Aligned_cols=227  Identities=16%  Similarity=0.178  Sum_probs=146.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccC-------C
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-------D  106 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~  106 (279)
                      .+..||+....+..    .+...||.+.|.+++|.|. ...|++|++||.|.|||++-.........+....       .
T Consensus       123 T~r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             eeeeeeeccceeec----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            56788888888765    2257899999999999994 4578899999999999997554211100000000       0


Q ss_pred             CCcc---cceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEECCCCeeeEE------EeccCccccccce
Q 023672          107 QDSY---EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCT------YRAYDAVDEITAA  176 (279)
Q Consensus       107 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~v  176 (279)
                      ..+.   .......++..|..-.    .+.+..|...||+++. |+.|+|||++.......      ...+........+
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssv----Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~  274 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSV----TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ  274 (720)
T ss_pred             CCchhhccccccccccCceeeee----EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence            0000   0001112222232200    0122457778999887 99999999997543222      2222221222367


Q ss_pred             eeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCC--CceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       177 ~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .++.....|.+++++ .|+.|++|++..-+..  ....+    .++.  .....-..+| ++.+|++|+.|...++|.+.
T Consensus       275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s--P~~~~----sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSIS--PVAEF----SGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             EEEEecCCCCeEEEEecCCcEEEEeccccCcC--chhhc----cCcccceeeeeeecCC-CCceEeccCCCcceeeeeec
Confidence            788888889888855 9999999999863211  11111    2221  1233446789 89999999999999999998


Q ss_pred             CCe-EEEEEeecCCCEEEEEEccC
Q 023672          254 NME-LLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       254 ~~~-~~~~~~~~~~~v~~~~~spd  276 (279)
                      +.+ ....+.+|.-.|++++|.|.
T Consensus       348 ~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  348 SPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CccCChhhhhCcceEEEEEeeccc
Confidence            765 45677889999999999885

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=1e-18  Score=133.41  Aligned_cols=205  Identities=15%  Similarity=0.096  Sum_probs=140.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+-+||+.+....  ........+|.+.|.+|.|+| +-..+++.|.||+|++-|+++......                
T Consensus       211 ~VG~Wn~~~~~~d--~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v----------------  272 (498)
T KOG4328|consen  211 QVGLWNFGTQEKD--KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV----------------  272 (498)
T ss_pred             cEEEEecCCCCCc--cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH----------------
Confidence            5667777422211  122236778999999999999 556899999999999999986533111                


Q ss_pred             eeec-CCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECCCCCEE-EE
Q 023672          114 LVVT-EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKI-FA  190 (279)
Q Consensus       114 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  190 (279)
                      +... ....+..+       .|+.+...++.+..=|...+||++++.. ...+..|..     .|.+++++|...++ ++
T Consensus       273 ~s~~~d~~~fs~~-------d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-----KI~sv~~NP~~p~~laT  340 (498)
T KOG4328|consen  273 LSLDTDNIWFSSL-------DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-----KITSVALNPVCPWFLAT  340 (498)
T ss_pred             hhcCccceeeeec-------cccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-----ccceeecCCCCchheee
Confidence            0010 11122222       4566777788887777999999998654 666667766     89999999987554 44


Q ss_pred             -ecCCeEEEEEccCCCCcee-eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC----CCeEEEEEeec
Q 023672          191 -GYNKSVRVFDVHRPGRDFE-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHGQ  264 (279)
Q Consensus       191 -~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~----~~~~~~~~~~~  264 (279)
                       |.|++++|||+|.-..... .+..     ..|...|.++.|||.++. |++.+.|..|+|||..    .-.++..+. |
T Consensus       341 ~s~D~T~kIWD~R~l~~K~sp~lst-----~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-H  413 (498)
T KOG4328|consen  341 ASLDQTAKIWDLRQLRGKASPFLST-----LPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-H  413 (498)
T ss_pred             cccCcceeeeehhhhcCCCCcceec-----ccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-c
Confidence             4999999999997432221 2223     488899999999995555 9999999999999983    334444554 3


Q ss_pred             CC------CEEEEEEccC
Q 023672          265 EG------GVTHVSKLSS  276 (279)
Q Consensus       265 ~~------~v~~~~~spd  276 (279)
                      +.      .....+|.||
T Consensus       414 n~~t~RwlT~fKA~W~P~  431 (498)
T KOG4328|consen  414 NNRTGRWLTPFKAAWDPD  431 (498)
T ss_pred             cCcccccccchhheeCCC
Confidence            32      2344567775

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=5.3e-19  Score=136.48  Aligned_cols=181  Identities=14%  Similarity=0.164  Sum_probs=142.7

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      -.|++......++++|+..+.|+|||+....+.                 .....|...|+.+.|       +....+||
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h-----------------r~lkdh~stvt~v~Y-------N~~DeyiA  137 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIH-----------------RFLKDHQSTVTYVDY-------NNTDEYIA  137 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHh-----------------hhccCCcceeEEEEe-------cCCcceeE
Confidence            345555555589999999999999999843221                 123345678998888       45677999


Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCCceeeeeecccccCC
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  220 (279)
                      +++..|.|.|..+.++.....+.....    ..|.-+.|+|..++++  ++.+|.|.+||+... .      .+....+.
T Consensus       138 svs~gGdiiih~~~t~~~tt~f~~~sg----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-s------p~~~~~~~  206 (673)
T KOG4378|consen  138 SVSDGGDIIIHGTKTKQKTTTFTIDSG----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-S------PIFHASEA  206 (673)
T ss_pred             EeccCCcEEEEecccCccccceecCCC----CeEEEeecccccceeeEeeccCCeEEEEeccCC-C------cccchhhh
Confidence            999999999999999887777766532    2677899999988887  458999999999863 1      12222268


Q ss_pred             CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       221 ~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |..+...+||+|-+..+|++.+.|..|.+||.+..+....+. .+.+...++|+++|.|
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTY  264 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceE
Confidence            999999999999888899999999999999999877777776 5678999999999965

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=2.8e-18  Score=138.13  Aligned_cols=210  Identities=14%  Similarity=0.176  Sum_probs=154.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc---CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .++++++..-+...      ...+|...|.|+.|+.   ..++||++++|..|.|||+.......               
T Consensus       482 nlrVy~Lq~l~~~~------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~---------------  540 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTC------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV---------------  540 (1080)
T ss_pred             ceEEEEehhhhhhh------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh---------------
Confidence            44555554444333      6789999999999986   34689999999999999997542211               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-CeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                       ...-.|...|+++.|.     .+.-...+++++.|..|.+ +... ......+..+...-....++.|+..|..+++++
T Consensus       541 -qtld~HSssITsvKFa-----~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  541 -QTLDGHSSSITSVKFA-----CNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             -hhhcccccceeEEEEe-----ecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence             0233567789999882     2333367889999998854 4332 111222322222222237899999999999995


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEE
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT  269 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  269 (279)
                      + .|..|+|||+..+ +   ....++.. .+|.+....+...| .|-+|++.+.|.++.++|.-+|+++..+.+|...|+
T Consensus       614 ~cQDrnirif~i~sg-K---q~k~FKgs-~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESG-K---QVKSFKGS-RDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             EecccceEEEecccc-c---eeeeeccc-ccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence            5 9999999999984 3   33333322 57778888999999 999999999999999999999999999999999999


Q ss_pred             EEEEccCCC
Q 023672          270 HVSKLSSAY  278 (279)
Q Consensus       270 ~~~~spdg~  278 (279)
                      ++.|++|=+
T Consensus       688 G~kF~nDCk  696 (1080)
T KOG1408|consen  688 GVKFLNDCK  696 (1080)
T ss_pred             eeeecccch
Confidence            999999854

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=5.1e-18  Score=122.73  Aligned_cols=196  Identities=16%  Similarity=0.251  Sum_probs=141.8

Q ss_pred             CCCCCceEEEEEccCCC-----eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           57 SIPNNFLKGIKWSPDGS-----SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~-----~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ..|.-+++.+.|.|+..     +|||++  ..+++|.+.............        ..........+++++.|+-. 
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L--------~~~kns~~~aPlTSFDWne~-  161 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVL--------NNNKNSEFCAPLTSFDWNEV-  161 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhh--------ccCcccccCCcccccccccC-
Confidence            36888999999999763     566554  379999997432111110000        01122345568999999532 


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCe---eeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~  206 (279)
                           +.++|.+++.|-+..|||++++.   ....+-.|..     .|+.++|...+.-++  +|.||.+|+||+|.-. 
T Consensus       162 -----dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK-----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-  230 (364)
T KOG0290|consen  162 -----DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK-----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-  230 (364)
T ss_pred             -----CcceeEeecccCeEEEEEEeeccccceeeEEEecCc-----ceeEEEeccCccceEEEecCCCcEEEEEecccc-
Confidence                 55699999999999999999873   3555666776     999999999875554  4699999999999721 


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEecCCC-eEEEEEeecCCCEEEEEEccCCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYREDNM-ELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                          ..++...-.....+...++|++.+.+++++-..|. .|.+-|+|.. .++..+++|.+.|++++|.|...
T Consensus       231 ----HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~  300 (364)
T KOG0290|consen  231 ----HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS  300 (364)
T ss_pred             ----cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC
Confidence                12222222333567889999998888999877665 4999999975 57889999999999999999753

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=4.9e-18  Score=135.84  Aligned_cols=135  Identities=19%  Similarity=0.310  Sum_probs=108.3

Q ss_pred             ccccCCCCcEEEEecCCC-----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCC
Q 023672          131 MSASDPTSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRP  204 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~  204 (279)
                      +++.+|+++++|+++...     .|++|+..+-..+..+..|.-     .|+.++|+||+++|+ ++.|+++.+|.....
T Consensus       530 ~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~  604 (764)
T KOG1063|consen  530 ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQED  604 (764)
T ss_pred             EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence            456699999999997654     489999988888888888876     899999999999999 569999999998653


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC--eEEEE--EeecCCCEEEEEEcc
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYV--LHGQEGGVTHVSKLS  275 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~--~~~~~--~~~~~~~v~~~~~sp  275 (279)
                      ......+..    .+.|+.-|.++.|+| ++.+++|+|.|.+|++|.....  +.+..  ...+...|+.++|.|
T Consensus       605 ~~~e~~fa~----~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  605 IKDEFRFAC----LKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             cchhhhhcc----ccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            222111111    378999999999999 8889999999999999998877  44333  334778899999887

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=7.1e-18  Score=122.03  Aligned_cols=188  Identities=16%  Similarity=0.225  Sum_probs=140.6

Q ss_pred             CCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           58 IPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        58 ~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      .+..++++..|+. +.+++.++|-|-+..|||++++..              ..+..-...|...|++++|.-.      
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------~~vkTQLIAHDKEV~DIaf~~~------  207 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------GTVKTQLIAHDKEVYDIAFLKG------  207 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--------------cceeeEEEecCcceeEEEeccC------
Confidence            4567899999988 778999999999999999997621              1222345678889999999432      


Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      .-+.+|+.+.||.|+++|++..+....+.....  ...+...++|++.. ++++ .. ....|.+.|+|.+..+.     
T Consensus       208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-----  280 (364)
T KOG0290|consen  208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-----  280 (364)
T ss_pred             ccceEEEecCCCcEEEEEecccccceEEecCCC--CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-----
Confidence            335899999999999999998654443332221  12267789999865 5666 34 66789999999864333     


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe------EEEEEeecCCCEEEEEEcc
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~sp  275 (279)
                        ..+.+|.+.|+.++|.|.....|++++.|..+.+||+.+.-      ++..+. ..+.|..+.|+|
T Consensus       281 --a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  281 --ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             --ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence              23379999999999999888999999999999999997532      233333 456789999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=8.5e-19  Score=139.35  Aligned_cols=167  Identities=16%  Similarity=0.359  Sum_probs=129.6

Q ss_pred             CCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...|+.+.|+| |..+||+++.||.|++|.+..+..........          .+...|++.|+++.|+|-.      .
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe----------~~lt~h~eKI~slRfHPLA------a  690 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE----------KILTIHGEKITSLRFHPLA------A  690 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc----------eeeecccceEEEEEecchh------h
Confidence            35699999999 88899999999999999998776543322221          2556788899999998862      3


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeecccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      ..|++++.|-+|++||+.+++....+..|..     .|..++|+|+|+.++ ++.||+|++|+.+....++..-....  
T Consensus       691 dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-----qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv--  763 (1012)
T KOG1445|consen  691 DVLAVASYDSTIELWDLANAKLYSRLVGHTD-----QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV--  763 (1012)
T ss_pred             hHhhhhhccceeeeeehhhhhhhheeccCcC-----ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc--
Confidence            4899999999999999999999999999987     999999999999999 67999999999998654443332221  


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCC----cEEEEecCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDN  254 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg----~i~~wd~~~  254 (279)
                          ...-..+.|.- +|.++++.+.|.    .|.+||..+
T Consensus       764 ----gtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  764 ----GTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ----cCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhh
Confidence                12334677888 777777666554    477777653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.8e-18  Score=127.08  Aligned_cols=199  Identities=10%  Similarity=0.094  Sum_probs=147.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|+++.|+.++++|++|+.|..+++|.++..-....          .+++.....+|...|.++.|       
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------~KPI~~~~~~H~SNIF~L~F-------  113 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------PKPIGVMEHPHRSNIFSLEF-------  113 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------CCCceeccCccccceEEEEE-------
Confidence            6778999999999999999999999999999999874321111          12222234456678888877       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +....++++|..+++|.+.|+++.+.+..+......   ..|+.+..+|..+.+++. .++.|.+||.+....+...+..
T Consensus       114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~---~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR---GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             ccCCeeEecCCCcceeEeeecccceeeeeecccCcc---cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence            667789999999999999999999888777654432   279999999998888754 9999999999974334433322


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEE------EeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYV------LHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~------~~~~~~~v~~~~~spdg~  278 (279)
                           .........+.|+|....+|++.+..+-+-+||.+... ++..      ++.....-.++.|+|+|.
T Consensus       191 -----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~  257 (609)
T KOG4227|consen  191 -----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN  257 (609)
T ss_pred             -----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence                 23345678899999778899999999999999998643 2221      222122335677888874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.7e-17  Score=126.97  Aligned_cols=206  Identities=12%  Similarity=0.162  Sum_probs=153.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCC-CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPN-NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      -.+.||+.+.+.....    .+.|+. ..+.....+|++++|+..+..|.|.|.-..++....                 
T Consensus       281 y~ysyDle~ak~~k~~----~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~-----------------  339 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLK----PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT-----------------  339 (514)
T ss_pred             EEEEeecccccccccc----CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh-----------------
Confidence            4678999888765432    233443 457778889999999999999999999888765432                 


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                       ...-.+.|..++|       +.+++.|++++.+|.|.+||+++..++..+...+..    .-++++.++++.++|+| .
T Consensus       340 -s~KieG~v~~~~f-------sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~  407 (514)
T KOG2055|consen  340 -SFKIEGVVSDFTF-------SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSD  407 (514)
T ss_pred             -eeeeccEEeeEEE-------ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccC
Confidence             2333457888877       668889999999999999999999999888876643    22467888999999988 7


Q ss_pred             CCeEEEEEccCC--CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC--CCcEEEEecCCCeEEEEEeecC---
Q 023672          193 NKSVRVFDVHRP--GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQE---  265 (279)
Q Consensus       193 d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~---  265 (279)
                      .|.|.|||..+-  +...+.+..+    ..-...|++++|+| ++++|+.+|.  +..+++-.+.+......++...   
T Consensus       408 ~GiVNIYd~~s~~~s~~PkPik~~----dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v  482 (514)
T KOG2055|consen  408 SGIVNIYDGNSCFASTNPKPIKTV----DNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV  482 (514)
T ss_pred             cceEEEeccchhhccCCCCchhhh----hhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcc
Confidence            899999997641  1111222222    34466899999999 9999998875  5679999988877666666433   


Q ss_pred             CCEEEEEEccCCC
Q 023672          266 GGVTHVSKLSSAY  278 (279)
Q Consensus       266 ~~v~~~~~spdg~  278 (279)
                      +.|+||+|||.|=
T Consensus       483 g~vtc~aFSP~sG  495 (514)
T KOG2055|consen  483 GHVTCMAFSPNSG  495 (514)
T ss_pred             cceEEEEecCCCc
Confidence            4799999999663

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.78  E-value=8.2e-18  Score=137.20  Aligned_cols=175  Identities=14%  Similarity=0.239  Sum_probs=133.7

Q ss_pred             eEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee
Q 023672           37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV  116 (279)
Q Consensus        37 ~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (279)
                      .+|++.++...+.+.   ....|.++|++++...-++.+++++.+|.++.||..+.....                  ..
T Consensus       473 d~fNmQSGi~r~sf~---~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~------------------~l  531 (910)
T KOG1539|consen  473 DRFNMQSGIHRKSFG---DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK------------------SL  531 (910)
T ss_pred             EEEEcccCeeecccc---cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee------------------ee
Confidence            345555554433211   346899999999999989999999999999999998754321                  11


Q ss_pred             cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCe
Q 023672          117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKS  195 (279)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~  195 (279)
                      .-+..+..+.+       +.....++.+..|-.|+++|+.+.+.++.+.+|..     .|++++|||||++|+++ .|++
T Consensus       532 ~l~~~~~~iv~-------hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~t  599 (910)
T KOG1539|consen  532 RLGSSITGIVY-------HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDST  599 (910)
T ss_pred             ccCCCcceeee-------eehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCc
Confidence            12233444433       34455788889999999999999999999999987     99999999999999955 9999


Q ss_pred             EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-CcEEEEecCC
Q 023672          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDN  254 (279)
Q Consensus       196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-g~i~~wd~~~  254 (279)
                      |++||+-++ ..+..+        .-..++.++.|+| +|++||+...| .-|++|--.+
T Consensus       600 Ir~wDlpt~-~lID~~--------~vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  600 IRTWDLPTG-TLIDGL--------LVDSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             EEEEeccCc-ceeeeE--------ecCCcceeeEECC-CCCEEEEEEecCceEEEEEchh
Confidence            999999984 222222        2356789999999 99999999988 4599997543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.2e-18  Score=144.83  Aligned_cols=192  Identities=17%  Similarity=0.226  Sum_probs=137.6

Q ss_pred             CCceEEEEEccCCCe----EEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           60 NNFLKGIKWSPDGSS----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~----l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ...-+.++|.+.+..    ||.|..||.|.+||...-..           .....+......|.+.|..+.|++.     
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------~~~~~~la~~~~h~G~V~gLDfN~~-----  127 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------NASEEVLATKSKHTGPVLGLDFNPF-----  127 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------CcchHHHhhhcccCCceeeeecccc-----
Confidence            345788999987765    88999999999999875200           0111111233456679999988654     


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                       .++.||+|+.||.|.|||+...+.-....   .......|.+++|+..-..++ ++ .+|.+.|||++.. ++.-.+..
T Consensus       128 -q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~  202 (1049)
T KOG0307|consen  128 -QGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSD  202 (1049)
T ss_pred             -CCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccccc
Confidence             45599999999999999998754433332   111223799999998765555 55 7889999999983 32222211


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCc---EEEEecCCC-eEEEEEeecCCCEEEEEEccCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT---SAIYREDNM-ELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~---i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      .     +....+..++|+|++...|+++++|..   |.+||+|.. .++.++.+|..+|.+|.|++.+
T Consensus       203 ~-----~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  203 T-----PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             C-----CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence            1     222458899999988888888877654   999999854 5788899999999999999854

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=2.2e-18  Score=126.56  Aligned_cols=214  Identities=18%  Similarity=0.176  Sum_probs=139.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      -+++.|+.++.+..      .+.+|.+.|+.+.|.|+. ++++++|.|.+|++|++++..+.....              
T Consensus       116 vIrVid~~~~~~~~------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG--------------  175 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSK------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG--------------  175 (385)
T ss_pred             EEEEEecchhhhcc------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--------------
Confidence            34555555555544      678999999999999954 788999999999999999765432111              


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEecc------Cc-----------------c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY------DA-----------------V  170 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~------~~-----------------~  170 (279)
                      -..+|...|.++.|       ++++.+|++|+.|.+|++|++...+....+...      ..                 .
T Consensus       176 G~egHrdeVLSvD~-------~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDF-------SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             ccccccCcEEEEEE-------cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence            12457778999987       778999999999999999999854321111100      00                 0


Q ss_pred             ccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCC------ceeeeeecccccCCCCCceE--EEEEccCCCcEEEEE
Q 023672          171 DEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR------DFEKYSTLKGNKEGQAGIMS--AIAFSPTHTGMLAIG  241 (279)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~v~--~~~~sp~~~~~l~~~  241 (279)
                      -|...|-|+.|-  |.++++ +.++.|..|..-.-+.      +.+.-.++...+.-....+.  ..+|.| -+.+||.|
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~g  325 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALG  325 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhc
Confidence            011133344443  456664 4778999998722111      11111222222222233333  456677 78899999


Q ss_pred             eCCCcEEEEecCCCeEE--EEEeec--CCCEEEEEEccCCC
Q 023672          242 SYSQTSAIYREDNMELL--YVLHGQ--EGGVTHVSKLSSAY  278 (279)
Q Consensus       242 ~~dg~i~~wd~~~~~~~--~~~~~~--~~~v~~~~~spdg~  278 (279)
                      ...|.|++||++..++.  .++..+  ...|+..+||.||.
T Consensus       326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence            99999999999987652  233322  34799999999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.77  E-value=9.6e-18  Score=134.20  Aligned_cols=182  Identities=13%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEE-EEeeCcc
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD-FCWFPHM  131 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~  131 (279)
                      ...+.||...|..+++.+.. .++++|+||++++|+-..++.....               ....+.+-|.. ++|.+  
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~---------------~~~~~~g~i~~~i~y~e--   68 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH---------------AFEGPKGFIANSICYAE--   68 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce---------------ecccCcceeeccceecc--
Confidence            34789999999999987654 7999999999999998765442211               11223333333 55522  


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                          .++-.+++|+.|.+|.+|.+.+..+...+..|..     .|++++...++. +++| -|.++++|-...-      
T Consensus        69 ----~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l------  132 (745)
T KOG0301|consen   69 ----SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS-----NVCSLSIGEDGT-LISGSWDSTAKVWRIGEL------  132 (745)
T ss_pred             ----ccCcceEeecccceEEEEecCCCCchhhhhcccc-----ceeeeecCCcCc-eEecccccceEEecchhh------
Confidence                2445689999999999999999999988888876     666666666655 4443 6777777765421      


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ...    ..+|...|.+++.-| .. .++|||.|.+|++|.-  ++++.+|.+|.+-|+++++-|+
T Consensus       133 ~~~----l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  133 VYS----LQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             hcc----cCCcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence            011    134444444444444 22 4444444444444432  3344444444444444444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=1.6e-16  Score=118.55  Aligned_cols=206  Identities=16%  Similarity=0.167  Sum_probs=135.7

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccc-----cccccccc---------C-CCCcccceeeecCCCceEEE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY-----DVNACSLA---------K-DQDSYEASLVVTEGESVYDF  125 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-----~~~~~~~~---------~-~~~~~~~~~~~~~~~~v~~~  125 (279)
                      ..+..+.|+.+...|..|+.||. ++|..+......     ....+..+         . ...+....+....+..|..+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence            34667778888888888888874 677765432100     00000000         0 01111222222223333333


Q ss_pred             EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEEEEcc
Q 023672          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVFDVH  202 (279)
Q Consensus       126 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~~d~~  202 (279)
                      .|...-+++-=+.+.|+++-.+. |.|||+++.+.+.++.....  +...+.++++++.+.+++  .+ ..|.|.+||..
T Consensus        85 ~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~  161 (391)
T KOG2110|consen   85 FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP--NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI  161 (391)
T ss_pred             ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCC--CccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence            33222222222445666665554 99999999999888765421  112566666677777888  44 78999999998


Q ss_pred             CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-EEEEecCCCeEEEEEeecC--CCEEEEEEccCCCC
Q 023672          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQE--GGVTHVSKLSSAYT  279 (279)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~--~~v~~~~~spdg~~  279 (279)
                      +-    +....+    ..|.+.+.+++|++ +|.+||++++.|+ |||+.+.+|+.++.|+--.  ..|.+++|+||++|
T Consensus       162 nl----~~v~~I----~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  162 NL----QPVNTI----NAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             cc----eeeeEE----EecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence            72    444455    69999999999999 9999999999998 7999999999999988433  36899999999975

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=3.1e-17  Score=120.60  Aligned_cols=175  Identities=17%  Similarity=0.261  Sum_probs=132.8

Q ss_pred             ccCCCCCceEEEEEcc-----CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672           55 TSSIPNNFLKGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-----~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (279)
                      ....|+.+|.+++|++     +.+.+++++. ..+.+|...........            ..-....+.+..+.++|.-
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~l------------q~y~D~d~~Esfytcsw~y   99 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLL------------QSYADEDHDESFYTCSWSY   99 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeee------------eeccCCCCCcceEEEEEEe
Confidence            4567889999999985     2346666664 47889988743211000            0002234566788888865


Q ss_pred             cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCc
Q 023672          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~  207 (279)
                      ++..   ...++|.++.-|.|+|.|+.+++....+..|+.     .|..+.++|+. ++++++ .|..|++|++++.   
T Consensus       100 d~~~---~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~~---  168 (385)
T KOG1034|consen  100 DSNT---GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD---  168 (385)
T ss_pred             cCCC---CCeeEEeecceeEEEEEecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccCC---
Confidence            4322   245889999999999999999999999999987     99999999986 455555 9999999999984   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                       .++..+ ....+|.+.|.++.|++ ++.+|++++.|.+|++|++...+
T Consensus       169 -~Cv~Vf-GG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  169 -VCVAVF-GGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             -eEEEEe-cccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhH
Confidence             444333 34479999999999999 89999999999999999998543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=8.1e-17  Score=121.15  Aligned_cols=143  Identities=20%  Similarity=0.320  Sum_probs=114.9

Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-------eeeEEEeccCccccccceeeEEECCCC-
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG-  185 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-  185 (279)
                      ...+|..+|.++.|+|.      +.+.||+||.|.+|.||.+..+       +++..+.+|..     .|-.+.|+|.- 
T Consensus        76 ~v~GHt~~vLDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----rVg~V~wHPtA~  144 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----RVGLVQWHPTAP  144 (472)
T ss_pred             CccCccccccccccCcc------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-----eEEEEeecccch
Confidence            45678889999999886      6779999999999999999754       34556666665     88999999985 


Q ss_pred             CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      +.|+ +|.|..|.+||+.++    +.+.++     .|.+.|.++.|+. +|.+|++++.|..|+|||.++++.+..-.+|
T Consensus       145 NVLlsag~Dn~v~iWnv~tg----eali~l-----~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTG----EALITL-----DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             hhHhhccCCceEEEEeccCC----ceeeec-----CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            4455 569999999999995    223333     3899999999999 9999999999999999999999999888778


Q ss_pred             CC-CEEEEEEccCC
Q 023672          265 EG-GVTHVSKLSSA  277 (279)
Q Consensus       265 ~~-~v~~~~~spdg  277 (279)
                      .+ ....+.|-.+|
T Consensus       215 eG~k~~Raifl~~g  228 (472)
T KOG0303|consen  215 EGAKPARAIFLASG  228 (472)
T ss_pred             cCCCcceeEEeccC
Confidence            76 22334454444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.6e-16  Score=125.76  Aligned_cols=204  Identities=17%  Similarity=0.206  Sum_probs=151.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+..||+-+.+...      ....-.+.|++++.+|.+..++.|+.||.+..++...+......               .
T Consensus        91 ~i~EwDl~~lk~~~------~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r---------------~  149 (691)
T KOG2048|consen   91 SITEWDLHTLKQKY------NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR---------------S  149 (691)
T ss_pred             eEEEEecccCceeE------EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe---------------e
Confidence            46678887777665      45566789999999999999999999998888887765443221               2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec--cCccc-cccceeeEEECCCCCEEEEe
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVD-EITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~  191 (279)
                      .....+.|.++.|       +|++..++.|+.||.|++||+.++..+.....  .+... ...-|+++.|-.++ .|++|
T Consensus       150 l~rq~sRvLslsw-------~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg  221 (691)
T KOG2048|consen  150 LMRQKSRVLSLSW-------NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG  221 (691)
T ss_pred             cccccceEEEEEe-------cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe
Confidence            2334568999988       67888999999999999999999887663222  11111 23367888888665 56666


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE----EEEEeecCC
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEG  266 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~  266 (279)
                       ..|+|.+||...+        ++......|...|.+++-++ ++..+++++.|+.|..|...++..    ......|..
T Consensus       222 DS~G~V~FWd~~~g--------TLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h  292 (691)
T KOG2048|consen  222 DSAGTVTFWDSIFG--------TLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH  292 (691)
T ss_pred             cCCceEEEEcccCc--------chhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEEecCCccceeeeccccCCcc
Confidence             8999999999884        33333368888999999999 889999999999998888766532    233445777


Q ss_pred             CEEEEEEccC
Q 023672          267 GVTHVSKLSS  276 (279)
Q Consensus       267 ~v~~~~~spd  276 (279)
                      .|++++..++
T Consensus       293 dvrs~av~~~  302 (691)
T KOG2048|consen  293 DVRSMAVIEN  302 (691)
T ss_pred             cceeeeeecc
Confidence            7888876654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=6.9e-19  Score=143.57  Aligned_cols=196  Identities=14%  Similarity=0.200  Sum_probs=153.3

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      +..+.+.||..+|.|+.|...|.++++|+.|..++||..++..+..                 ...+|.+.+++++.   
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-----------------s~rGhs~ditdlav---  240 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-----------------SCRGHSGDITDLAV---  240 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-----------------cCCCCccccchhcc---
Confidence            3445788999999999999999999999999999999988765422                 22345567777643   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCC----
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR----  206 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~----  206 (279)
                          +.+..++++++.|..|++|.+.++.++..+..|..     .|++++|+|..   .++.||++++||.+-...    
T Consensus       241 ----s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-----avtaiafsP~~---sss~dgt~~~wd~r~~~~~y~p  308 (1113)
T KOG0644|consen  241 ----SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-----AVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVP  308 (1113)
T ss_pred             ----chhhhhhhhcccCceEEEEecCCCchHHHHhcccc-----ceeeeccCccc---cCCCCCceEeccccccccccCC
Confidence                66777899999999999999999999999999987     99999999975   455999999999881000    


Q ss_pred             -cee-----------------------------------------------------------------e-e----eecc
Q 023672          207 -DFE-----------------------------------------------------------------K-Y----STLK  215 (279)
Q Consensus       207 -~~~-----------------------------------------------------------------~-~----~~~~  215 (279)
                       +.+                                                                 + +    ..+.
T Consensus       309 rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~  388 (1113)
T KOG0644|consen  309 RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL  388 (1113)
T ss_pred             CCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhh
Confidence             000                                                                 0 0    0011


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ....+|...+..+.++|.+..+..+++.||...|||+-.|.++.......+.+..-+||+||+
T Consensus       389 H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt  451 (1113)
T KOG0644|consen  389 HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT  451 (1113)
T ss_pred             hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence            233567888999999998888888999999999999999988765554345677889999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.4e-17  Score=120.30  Aligned_cols=175  Identities=14%  Similarity=0.197  Sum_probs=124.1

Q ss_pred             CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEE
Q 023672           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (279)
Q Consensus        73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (279)
                      ..+|++-..|+|++||..+++......                 .+...+..+.|...     .....+.+|+.||+|++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk-----------------~~~~~~N~vrf~~~-----ds~h~v~s~ssDG~Vr~   98 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-----------------GPPATTNGVRFISC-----DSPHGVISCSSDGTVRL   98 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec-----------------CCCCcccceEEecC-----CCCCeeEEeccCCeEEE
Confidence            578889899999999999876543322                 12234445554211     14457899999999999


Q ss_pred             EECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-----cCCeEEEEEccCCCCceeeeeecccccCCCCCceEE
Q 023672          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (279)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (279)
                      ||+++......+......  ..+..+++..-.++.+++|     .+..|.+||+|...+++      ..-...|...|++
T Consensus        99 wD~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l------~~~~eSH~DDVT~  170 (376)
T KOG1188|consen   99 WDIRSQAESARISWTQQS--GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL------RQLNESHNDDVTQ  170 (376)
T ss_pred             EEeecchhhhheeccCCC--CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchh------hhhhhhccCccee
Confidence            999987665555433321  1255677776677788765     36789999999853322      2223689999999


Q ss_pred             EEEccCCCcEEEEEeCCCcEEEEecCCCe---EEEEEeecCCCEEEEEEccCC
Q 023672          228 IAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       228 ~~~sp~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++|+|.+..+|++||.||.|.|||+..-.   .+...-.|...|..+.|+.++
T Consensus       171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             EEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            99999889999999999999999997542   232333466778888888876

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=6.8e-17  Score=126.56  Aligned_cols=192  Identities=17%  Similarity=0.245  Sum_probs=140.4

Q ss_pred             eeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (279)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (279)
                      ....-++.+|.++|.|++..+++..+++|+.||+|+.|++....-..+.       ...........+|...|+.+.+  
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds-------~dp~vl~~~l~Ghtdavw~l~~--  404 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS-------YDPSVLSGTLLGHTDAVWLLAL--  404 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc-------cCcchhccceeccccceeeeee--
Confidence            3455588999999999999999999999999999999988732211111       1112233456778888988877  


Q ss_pred             cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc----------------------------------------
Q 023672          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA----------------------------------------  169 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~----------------------------------------  169 (279)
                           ++....|++|+.||++++|+.....+ .++.....                                        
T Consensus       405 -----s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~  478 (577)
T KOG0642|consen  405 -----SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIF  478 (577)
T ss_pred             -----cccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeec
Confidence                 55666899999999999999865443 11110000                                        


Q ss_pred             -------cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672          170 -------VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (279)
Q Consensus       170 -------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~  241 (279)
                             ......+.-+.++|...+.+++ .|+.|+++|..++    ..+...    ..|...++++++.| +|.+|+++
T Consensus       479 ~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~----~a~~~svtslai~~-ng~~l~s~  549 (577)
T KOG0642|consen  479 ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSM----VAHKDSVTSLAIDP-NGPYLMSG  549 (577)
T ss_pred             cccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc----ccchhe----eeccceecceeecC-CCceEEee
Confidence                   0011245677888888888866 9999999999984    222222    57888999999999 99999999


Q ss_pred             eCCCcEEEEecCCCeEEEEEeecC
Q 023672          242 SYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       242 ~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      +.|+.+++|.+....++.....|.
T Consensus       550 s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  550 SHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cCCceeehhhccchheeecccccc
Confidence            999999999998877766655553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.75  E-value=9.6e-17  Score=125.24  Aligned_cols=163  Identities=17%  Similarity=0.221  Sum_probs=116.2

Q ss_pred             CCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...|+|+.|-| +...++++-.+|.+.+||..-.                       .....+    +|.     ..+++
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------------------~~~t~p----~~~-----~~k~~  266 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------------------CGATAP----SYQ-----ALKDG  266 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------------------ccCCCC----ccc-----ccCCC
Confidence            36799999999 4456777888999999987421                       111111    110     01223


Q ss_pred             cEEEEecCCCcEEEEE-CCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc
Q 023672          139 CVFASTTRDHPIHLWD-ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ..++..       .|. ..+..++..+.....     .|...+|+|||++|| ++.||.+||||+.+.        .+..
T Consensus       267 ~~f~i~-------t~ksk~~rNPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------eLlg  326 (636)
T KOG2394|consen  267 DQFAIL-------TSKSKKTRNPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------ELLG  326 (636)
T ss_pred             CeeEEe-------eeeccccCCccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHH--------HHHH
Confidence            233221       111 111234444443333     788999999999999 579999999999972        2333


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      .++..-+...|++||| ||.+|++|++|..|.||.+...+.+..-++|..+|..++|.|
T Consensus       327 ~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  327 VMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            3344456799999999 999999999999999999999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=5.3e-17  Score=122.41  Aligned_cols=154  Identities=18%  Similarity=0.215  Sum_probs=119.7

Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee---------eEEEeccCccccccceeeEEECCC
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---------RCTYRAYDAVDEITAAFSVAFNPT  184 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~  184 (279)
                      +..+...+++.+.|.+.      ..+.+++|+.|..|++|-++.+..         ...+..|.     ..|+++.|+|+
T Consensus         8 i~wH~~~pv~s~dfq~n------~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~-----~aVN~vRf~p~   76 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKN------SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT-----RAVNVVRFSPD   76 (434)
T ss_pred             EEecCCCceEEEEeccC------cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc-----ceeEEEEEcCC
Confidence            44456678888887443      222899999999999999875432         22333444     38999999999


Q ss_pred             CCEEEEe-cCCeEEEEEccC--------CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          185 GTKIFAG-YNKSVRVFDVHR--------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       185 ~~~l~~~-~d~~i~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      |.++++| .+|.|.+|-...        .....+..........+|...|..++|+| ++.++++++.|+.+++||+..|
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence            9999977 889999998762        00111111223333367999999999999 9999999999999999999999


Q ss_pred             eEEEEEeecCCCEEEEEEccCCCC
Q 023672          256 ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..+..+..|...|..++|.|-++|
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             eeEeeccccccccceeecchhhhh
Confidence            999999999999999999998875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-17  Score=129.61  Aligned_cols=176  Identities=17%  Similarity=0.271  Sum_probs=129.8

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      .....+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..                +....+..+|...|.++.|-|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaNIFsvKFvP~  104 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTANIFSVKFVPY  104 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccceeEEeeecc
Confidence            334478999999999999999999999999999999998743                2333477788899999999885


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCe----------eeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEE
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRV  198 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~  198 (279)
                           .+.+++++|+.|..|+++|+...+          ....+..|..     .|..++-.|++...+  ++.||+++-
T Consensus       105 -----tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-----rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen  105 -----TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-----RVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             -----CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhh-----hhhheecCCCCCceEEEecCCcceee
Confidence                 366799999999999999998522          2222333333     788889999884443  559999999


Q ss_pred             EEccCCCCceeee--eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          199 FDVHRPGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       199 ~d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      +|++.+.......  ..........--...++..+|.+..+|+.|+.|-..++||.
T Consensus       175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            9999742111100  00000001112346789999988899999999999999994

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=2.1e-16  Score=115.87  Aligned_cols=187  Identities=19%  Similarity=0.272  Sum_probs=139.4

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .+|+|.+|++|.+.+|++.....|.||.......-..              ......|...|+.++|       +|..+.
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~--------------~htls~Hd~~vtgvdW-------ap~snr   69 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP--------------AHTLSEHDKIVTGVDW-------APKSNR   69 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCcee--------------ceehhhhCcceeEEee-------cCCCCc
Confidence            5699999999999999999999999999886531100              1133456678999999       566779


Q ss_pred             EEEecCCCcEEEEEC-CCCeeeEEE--eccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          141 FASTTRDHPIHLWDA-TTGLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       141 l~s~~~d~~i~i~d~-~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      |++|+.|..-++|.. ..++-..++  .....     .++++.|+|.++.+++| ....|.||-++.. ...   ..-+.
T Consensus        70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNr-----AAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdW---WVsKh  140 (361)
T KOG1523|consen   70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR-----AATCVKWSPKENKFAVGSGARLISVCYYEQE-NDW---WVSKH  140 (361)
T ss_pred             eeEccCCCCccccccCCCCeeccceeEEEecc-----ceeeEeecCcCceEEeccCccEEEEEEEecc-cce---ehhhh
Confidence            999999999999999 444433332  22222     78999999999999977 7788999988762 222   12222


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec-----CC-------------CeEEEEEeecCCCEEEEEEccCCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE-----DN-------------MELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ....+...|.++.|+| ++-+|++|+.|+..+++..     ++             |+++..+....++|.++.|+|+|.
T Consensus       141 ikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  141 IKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            2256677899999999 9999999999999999963     11             234445545567999999999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=8.8e-16  Score=108.71  Aligned_cols=202  Identities=16%  Similarity=0.148  Sum_probs=126.9

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc---ccccccc-CCCCcccceee-------ecCCCceEEEEeeC-
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD---VNACSLA-KDQDSYEASLV-------VTEGESVYDFCWFP-  129 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~---~~~~~~~-~~~~~~~~~~~-------~~~~~~v~~~~~~~-  129 (279)
                      .|..-+++|.+++|+.|+.+|.|.++.+.+.-....   .....+. ..++..+..+.       ....+.|+...|.- 
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~   91 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEE   91 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhh
Confidence            366778999999999999999999999875322111   0011110 11122111111       11112333333311 


Q ss_pred             --------------------------cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672          130 --------------------------HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP  183 (279)
Q Consensus       130 --------------------------~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (279)
                                                +.+.+.|..+.++.++.|+.++-||+++|+..+++++|.+     .+.++.--.
T Consensus        92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-----YvH~vv~R~  166 (325)
T KOG0649|consen   92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-----YVHSVVGRN  166 (325)
T ss_pred             hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-----eeeeeeecc
Confidence                                      1345677777788888999999999999999999999997     888888744


Q ss_pred             CCCEEEE-ecCCeEEEEEccCCCCceeeeeecccc--cCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672          184 TGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGN--KEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (279)
Q Consensus       184 ~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~  259 (279)
                      ....+++ +.||++|+||+++. +..+.+...+..  ...| ...|.+++-   +..+|++|+ ...+.+|++++.++..
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~t~  241 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSESTC  241 (325)
T ss_pred             cCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEeccCCCceE
Confidence            3444554 59999999999994 333333222111  0111 234666665   456888876 4569999999998877


Q ss_pred             EEeecCCCEEEEEEc
Q 023672          260 VLHGQEGGVTHVSKL  274 (279)
Q Consensus       260 ~~~~~~~~v~~~~~s  274 (279)
                      .++- ..+|..+.|-
T Consensus       242 vfpi-pa~v~~v~F~  255 (325)
T KOG0649|consen  242 VFPI-PARVHLVDFV  255 (325)
T ss_pred             EEec-ccceeEeeee
Confidence            7663 3345555554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.4e-15  Score=123.96  Aligned_cols=195  Identities=14%  Similarity=0.114  Sum_probs=124.4

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .+.+++||.......       .+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++....             
T Consensus       183 ~~~i~i~d~dg~~~~-------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF-------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------  242 (429)
T ss_pred             eEEEEEECCCCCCce-------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-------------
Confidence            356666776544321       456678889999999999999987654   469999998653210             


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEE--EECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHL--WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                          +.. ..+.....       +|+|||+.|+.++ .+|.+.|  ||+.+++.. .+..+..     .+....|+|+|+
T Consensus       243 ----l~~-~~g~~~~~-------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~-----~~~~~~wSpDG~  304 (429)
T PRK01742        243 ----VAS-FRGHNGAP-------AFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTSGAG-----NNTEPSWSPDGQ  304 (429)
T ss_pred             ----Eec-CCCccCce-------eECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eeccCCC-----CcCCEEECCCCC
Confidence                000 01112233       4488999888764 6776555  566666543 3333332     567899999999


Q ss_pred             EEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          187 KIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       187 ~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      .|+ ++ .++...||++...+.....   +     .+..  ..+.|+| ++..|+.++.++ +.+||+.+++.......+
T Consensus       305 ~i~f~s~~~g~~~I~~~~~~~~~~~~---l-----~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~  372 (429)
T PRK01742        305 SILFTSDRSGSPQVYRMSASGGGASL---V-----GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF  372 (429)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeEE---e-----cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC
Confidence            877 55 6788899988653322221   1     1122  3578999 888888777665 666999988754322222


Q ss_pred             CCCEEEEEEccCCCC
Q 023672          265 EGGVTHVSKLSSAYT  279 (279)
Q Consensus       265 ~~~v~~~~~spdg~~  279 (279)
                        ...++.|+|||++
T Consensus       373 --~~~~~~~sPdG~~  385 (429)
T PRK01742        373 --LDESPSISPNGIM  385 (429)
T ss_pred             --CCCCceECCCCCE
Confidence              2356889999973

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=7.8e-17  Score=128.40  Aligned_cols=179  Identities=20%  Similarity=0.270  Sum_probs=127.7

Q ss_pred             EccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec
Q 023672           68 WSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT  145 (279)
Q Consensus        68 ~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  145 (279)
                      |+.+..++|+  ++..|.|-||+++......+.           ..  -....+..|+++.|.|-      |...|++++
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDg-----------v~--p~l~Ngt~vtDl~WdPF------D~~rLAVa~  647 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG-----------VM--PGLFNGTLVTDLHWDPF------DDERLAVAT  647 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcc-----------cc--cccccCceeeecccCCC------ChHHeeecc
Confidence            3334455553  455799999999865432221           11  12345678999999775      666899999


Q ss_pred             CCCcEEEEECCCC-------eeeEEEeccCccccccceeeEEECCCC-CEEEE-ecCCeEEEEEccCCCCceeeeeeccc
Q 023672          146 RDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       146 ~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      .||.|++|.+..+       .+...+..|..     .|+++.|+|-. ..|++ +.|.+|++||+++.        ....
T Consensus       648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e-----KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~--------~~~~  714 (1012)
T KOG1445|consen  648 DDGQINLWRLTANGLPENEMTPEKILTIHGE-----KITSLRFHPLAADVLAVASYDSTIELWDLANA--------KLYS  714 (1012)
T ss_pred             cCceEEEEEeccCCCCcccCCcceeeecccc-----eEEEEEecchhhhHhhhhhccceeeeeehhhh--------hhhh
Confidence            9999999999754       34455666665     89999999964 56664 49999999999984        2233


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCC-CEEEEEEccCCCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG-GVTHVSKLSSAYT  279 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~-~v~~~~~spdg~~  279 (279)
                      .+.+|.+.|..++||| +|+.+++.+.||+|++|+.++++ +++.-.+..+ .-..+.|.-||++
T Consensus       715 ~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  715 RLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             eeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence            3379999999999999 99999999999999999998875 3333332211 2233556666653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.2e-16  Score=123.74  Aligned_cols=206  Identities=14%  Similarity=0.199  Sum_probs=151.1

Q ss_pred             eeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce-eeecCCCceEEEEee
Q 023672           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS-LVVTEGESVYDFCWF  128 (279)
Q Consensus        50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~  128 (279)
                      +....++..|.+.|..++|.|-...|++++.||++++|++... ....         ....... ....|.++|.+++. 
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~-~~s~---------~~~~epi~tfraH~gPVl~v~v-  352 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKA-KKSA---------EKDVEPILTFRAHEGPVLCVVV-  352 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhccc-CCcc---------ccceeeeEEEecccCceEEEEe-
Confidence            4444478889999999999998889999999999999999431 1100         0111111 33467789999876 


Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCC----------eeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEE
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVR  197 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~  197 (279)
                            .+++..+++|+.||+|+.|++...          .....+.+|..     .|+.+++|+....|++ +.||+++
T Consensus       353 ------~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-----avw~l~~s~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  353 ------PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-----AVWLLALSSTKDRLLSCSSDGTVR  421 (577)
T ss_pred             ------cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccc-----ceeeeeecccccceeeecCCceEE
Confidence                  778999999999999999966421          12233445554     8999999998877875 5999999


Q ss_pred             EEEccCCCCc--eeee---------------------------------------eecccc---cCCCCCceEEEEEccC
Q 023672          198 VFDVHRPGRD--FEKY---------------------------------------STLKGN---KEGQAGIMSAIAFSPT  233 (279)
Q Consensus       198 ~~d~~~~~~~--~~~~---------------------------------------~~~~~~---~~~~~~~v~~~~~sp~  233 (279)
                      +|+.... .+  +...                                       ..+...   .......+..+.++| 
T Consensus       422 ~w~~~~~-~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-  499 (577)
T KOG0642|consen  422 LWEPTEE-SPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-  499 (577)
T ss_pred             eeccCCc-CccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-
Confidence            9998652 21  0000                                       000000   000123467788999 


Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +..+.+++.+|+.|+++|..+++++.....|...++++++-|+|-|
T Consensus       500 ~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~  545 (577)
T KOG0642|consen  500 TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPY  545 (577)
T ss_pred             CCCeeEecccCCceecccccccccchheeeccceecceeecCCCce
Confidence            8899999999999999999999999999999999999999999854

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.7e-15  Score=123.53  Aligned_cols=200  Identities=19%  Similarity=0.142  Sum_probs=138.2

Q ss_pred             CCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...|+|+.|+| +..+++.|+.+|.|.+||+..+.....           .........|..++..+.|-.     ++.+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----------s~ls~~~~sh~~~v~~vvW~~-----~~~~  305 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----------SGLSALEVSHSEPVTAVVWLQ-----NEHN  305 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----------cccccccccCCcCeEEEEEec-----cCCC
Confidence            46799999999 667888999999999999987654211           122234566788999999954     3344


Q ss_pred             cEEEEecCCCcEEEEECCCCee-eEEEecc------CccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCcee
Q 023672          139 CVFASTTRDHPIHLWDATTGLL-RCTYRAY------DAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~------~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                      .-+++++.||.|..|+++.-.. ...+...      ........+++++|.+.. ..+++| ..|.|.--+.........
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            6688999999999998875332 1111111      111222378899999875 334456 888887744332111121


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC-CCeEEEEEeecCCCEEEEEEccC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ...........|.++|+++.++|....++++++ |.+++||... ...++..+..+...|++++|||.
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            222223334678899999999996666666666 9999999988 77788888888888999999985

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=4.9e-16  Score=111.15  Aligned_cols=227  Identities=12%  Similarity=0.145  Sum_probs=143.6

Q ss_pred             eeeeEecCCCCcccceeeeeeccC-CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc-------ccccC
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-------CSLAK  105 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~  105 (279)
                      --+..|++.+.+...      .+. .|+..|+.+.--|+ ..|.+-++|+.+.+|++..+........       |.+..
T Consensus        35 G~V~~w~lqt~r~~~------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl  107 (323)
T KOG0322|consen   35 GIVKMWVLQTERDLP------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSL  107 (323)
T ss_pred             ceEEEEEeecCccch------hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccccccee
Confidence            357788888887765      333 46788999999998 4688999999999999987544211110       10000


Q ss_pred             --CCCcc----------cceee-----------------ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC
Q 023672          106 --DQDSY----------EASLV-----------------VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT  156 (279)
Q Consensus       106 --~~~~~----------~~~~~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~  156 (279)
                        .....          .....                 ...-+.+.+..|.-.    ....-+++.|..+|.+.+||+.
T Consensus       108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~----c~s~~lllaGyEsghvv~wd~S  183 (323)
T KOG0322|consen  108 VKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA----CGSTFLLLAGYESGHVVIWDLS  183 (323)
T ss_pred             ccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc----ccceEEEEEeccCCeEEEEEcc
Confidence              00000          00000                 001122333322110    1112357788899999999999


Q ss_pred             CCeeeEEEecc-----CccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672          157 TGLLRCTYRAY-----DAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       157 ~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                      ++..+-.++..     ....+..+|.++.|.+.-..=++ |.+..+..|.+..............    -..-.|..+.+
T Consensus       184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~----lknpGv~gvrI  259 (323)
T KOG0322|consen  184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT----LKNPGVSGVRI  259 (323)
T ss_pred             CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE----ecCCCccceEE
Confidence            87433322211     11223348889999865433333 3677888998875322222211221    11234778899


Q ss_pred             ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       231 sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      -| ++.++++++.|+.||||+.++.+++..++.|.+.|.+++|+||
T Consensus       260 Rp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  260 RP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             cc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence            99 9999999999999999999999999999999999999999998

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=3.3e-16  Score=122.41  Aligned_cols=170  Identities=22%  Similarity=0.313  Sum_probs=125.8

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      +...+|.++|.|-.|+|||.-|+|++.||.|++|.-...                  ..........+|++++|.|    
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------------------LRStl~Q~~~~v~c~~W~p----  155 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------------------LRSTVVQNEESIRCARWAP----  155 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------------------HHHHHhhcCceeEEEEECC----
Confidence            367899999999999999999999999999999987532                  1223455667999999944    


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                         ++..++.|.. +.+.+=.+.-...+-..+.|+.     -|.++.|++.++++++| .|-..++||-...     .+ 
T Consensus       156 ---~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG-----iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-----~L-  220 (737)
T KOG1524|consen  156 ---NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG-----LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-----NL-  220 (737)
T ss_pred             ---CCCceEEecC-CeEEEeecccccceeEEeccCc-----EEEEeecCccccceeecCCceeEEeecccCc-----cc-
Confidence               5555555543 3455555555555556677776     89999999999999976 9999999998741     11 


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~  278 (279)
                         .....|..+|++++|+| + ..++.++. ++++            +. ...+.|..++|||||.
T Consensus       221 ---f~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGT  269 (737)
T KOG1524|consen  221 ---FTSAAEEYAITSVAFNP-E-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGT  269 (737)
T ss_pred             ---ccCChhccceeeeeecc-c-cceeeeee-eeee------------ecCCCccceEEEEEcCCCc
Confidence               12268889999999999 6 55666653 2344            22 2456789999999984

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.71  E-value=1.1e-15  Score=123.44  Aligned_cols=192  Identities=15%  Similarity=0.239  Sum_probs=141.3

Q ss_pred             hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCcccccccccccc
Q 023672           27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      ++...+..-+-+||+...-.     ...++.+|...|+++.|.-.|  ..+++++.|..|.. +.......    ..   
T Consensus       519 LASasrdRlIHV~Dv~rny~-----l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~----g~---  585 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYD-----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS----GR---  585 (1080)
T ss_pred             hhhccCCceEEEEecccccc-----hhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccC----ce---
Confidence            34445555566777654332     234899999999999998866  67889999987654 33321000    00   


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT  184 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (279)
                          .+......-....++++.       +.|+..++++++.|..|+|||+.+++..+.|+......  +....+...|.
T Consensus       586 ----~f~r~t~t~~ktTlYDm~-------Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e--G~lIKv~lDPS  652 (1080)
T KOG1408|consen  586 ----LFPRHTQTLSKTTLYDMA-------VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE--GDLIKVILDPS  652 (1080)
T ss_pred             ----eccccccccccceEEEee-------eCCCcceEEEEecccceEEEeccccceeeeecccccCC--CceEEEEECCC
Confidence                000111122234566664       47889999999999999999999999999998755422  24557899999


Q ss_pred             CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       185 ~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      |.+++++ .|.++.++|+-++    +++...    .+|...|+.+.|.+ +-..|++.+.||.|.||.+.
T Consensus       653 giY~atScsdktl~~~Df~sg----EcvA~m----~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  653 GIYLATSCSDKTLCFVDFVSG----ECVAQM----TGHSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ccEEEEeecCCceEEEEeccc----hhhhhh----cCcchheeeeeecc-cchhheeecCCceEEEEECc
Confidence            9999976 9999999999985    444444    79999999999999 88899999999999999875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=1.5e-16  Score=124.36  Aligned_cols=129  Identities=15%  Similarity=0.249  Sum_probs=105.0

Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      .++|+|.-|++++.||.|++|. ++|-...++.-...     +|+|++|.|+++.++-+..+.+.+=.+....+.    .
T Consensus       111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~----i  180 (737)
T KOG1524|consen  111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQGGHISIKPLAANSKI----I  180 (737)
T ss_pred             ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc-----eeEEEEECCCCCceEEecCCeEEEeecccccce----e
Confidence            3588999999999999999999 56655555444444     899999999988887666677777666653221    1


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ..    .+|.+-|.++.|+| ..+++++|++|-..++||. -|..++.-..|+.+|++++|.||-
T Consensus       181 ~W----kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~  239 (737)
T KOG1524|consen  181 RW----RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEK  239 (737)
T ss_pred             EE----eccCcEEEEeecCc-cccceeecCCceeEEeecc-cCcccccCChhccceeeeeecccc
Confidence            22    68999999999999 8899999999999999994 677788888899999999999984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.71  E-value=3.1e-15  Score=116.16  Aligned_cols=158  Identities=17%  Similarity=0.257  Sum_probs=126.1

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      +..+|.+....++.+|+...++|++.|+.+++|+ . .+..                  ....-..++.++.|       
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~------------------wt~~~~d~~~~~~f-------  415 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLE------------------WTKIIEDPAECADF-------  415 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc-C-Ccee------------------EEEEecCceeEeec-------
Confidence            5678999999999999999999999999999999 2 1110                  11112245555554       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +|.| .+|.|...|...+.|.++...+..-.. ..     ++.++.|+|+|.+|+.| .|+.|++|.+..+++.+.....
T Consensus       416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~-----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NE-----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             cCcc-eEEEeeccceEEEEecccceeEEEEec-CC-----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            7778 999999999999999998655544333 43     89999999999999977 9999999999987776665544


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .    .+  .+|+.+.||+ ++++|.+-+.|-.|..|...
T Consensus       489 ~----~g--s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  489 C----SG--SPITHLDWSS-DSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             e----cC--ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence            4    23  7899999999 99999999999999999543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.1e-15  Score=112.33  Aligned_cols=182  Identities=13%  Similarity=0.195  Sum_probs=123.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcc--ccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGI--SYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+|++. ++.+.      .+......-...+.||+|+++++++-...|++|.+--++-  .++....           
T Consensus       210 ~i~lw~lk-Gq~L~------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv-----------  271 (420)
T KOG2096|consen  210 KICLWDLK-GQLLQ------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV-----------  271 (420)
T ss_pred             cEEEEecC-Cceee------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh-----------
Confidence            56778887 55544      2222233345678999999999999989999999742111  0000000           


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-------eeeEEEeccCccccccceeeEEECCCC
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                      .-..+|...|..++|       +++...+++.+.||++++||.+-.       +.++....+...... ....++++|+|
T Consensus       272 f~LkGH~saV~~~aF-------sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~-~p~RL~lsP~g  343 (420)
T KOG2096|consen  272 FSLKGHQSAVLAAAF-------SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS-EPVRLELSPSG  343 (420)
T ss_pred             heeccchhheeeeee-------CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC-CceEEEeCCCC
Confidence            012346667877766       778899999999999999998631       222222211111111 33489999999


Q ss_pred             CEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       186 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      +.|+.+....+++|..+++ +...+   +.   ..|...|.++.|++ +|.++++++ |..+++..
T Consensus       344 ~~lA~s~gs~l~~~~se~g-~~~~~---~e---~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  344 DSLAVSFGSDLKVFASEDG-KDYPE---LE---DIHSTTISSISYSS-DGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             cEEEeecCCceEEEEcccC-ccchh---HH---HhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence            9999998889999999984 33322   22   57888999999999 999999987 66777775

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.70  E-value=2.1e-15  Score=121.09  Aligned_cols=214  Identities=13%  Similarity=0.219  Sum_probs=149.1

Q ss_pred             eeeeeeccCCCCCceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCcccc-cc--ccccccCCCC------ccc-----
Q 023672           49 FYNQFRTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISY-DV--NACSLAKDQD------SYE-----  111 (279)
Q Consensus        49 ~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~-~~--~~~~~~~~~~------~~~-----  111 (279)
                      .+.....+.||.+.|.+++|...+   -+||++|.|..|+||.+.-+.... ..  ..........      ...     
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            344556899999999999998744   378899999999999986443111 00  0000000000      000     


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                      ..+..+|...|+++.|       +|.+..|++++.|.++.+|...+.  --+...+.....+.....+...|+|+++.++
T Consensus       260 eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii  332 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII  332 (764)
T ss_pred             hhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence            1233478889999999       556778999999999999988654  3344444433333334688999999998888


Q ss_pred             E-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC----CCeEEEEEeec
Q 023672          190 A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHGQ  264 (279)
Q Consensus       190 ~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~----~~~~~~~~~~~  264 (279)
                      + |..|..++|-... .    ..........||...|..++|+| .|.+|++.+.|.+-||+-.-    +...+..-+-|
T Consensus       333 ~~g~~Gg~hlWkt~d-~----~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH  406 (764)
T KOG1063|consen  333 AHGRTGGFHLWKTKD-K----TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH  406 (764)
T ss_pred             EecccCcEEEEeccC-c----cceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccc
Confidence            5 5999999998433 1    11233333489999999999999 99999999999999998653    22344555567


Q ss_pred             CCCEEEEEEcc
Q 023672          265 EGGVTHVSKLS  275 (279)
Q Consensus       265 ~~~v~~~~~sp  275 (279)
                      ...+++++|-+
T Consensus       407 GyDl~c~~~vn  417 (764)
T KOG1063|consen  407 GYDLTCLSFVN  417 (764)
T ss_pred             cccceeeehcc
Confidence            77788888876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=2.3e-14  Score=103.47  Aligned_cols=156  Identities=22%  Similarity=0.415  Sum_probs=105.8

Q ss_pred             EEEEEccCCCeEEEeeC----------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           64 KGIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..+.|+|+|++|++-..          -|...||.++...               .....+.....++|.+++|      
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------------~~~~~i~l~~~~~I~~~~W------   67 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------------IPVESIELKKEGPIHDVAW------   67 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------------CccceeeccCCCceEEEEE------
Confidence            35789999987764322          2345566554321               2222344555567999999      


Q ss_pred             cCCCCcEEEEe--cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec---CCeEEEEEccCCCCc
Q 023672          134 SDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRD  207 (279)
Q Consensus       134 ~~~~~~~l~s~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~~~d~~~~~~~  207 (279)
                       +|++..|++.  ..+..|.+||++ ++.+..+.  ..     .+..+.|+|+|++++ +|.   .|.|.+||.++.   
T Consensus        68 -sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~---  135 (194)
T PF08662_consen   68 -SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQ-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK---  135 (194)
T ss_pred             -CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CC-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCC---
Confidence             6677776544  457799999996 55555554  22     567899999999998 442   478999999863   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC------CCcEEEEecCCCeEEEEE
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVL  261 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~  261 (279)
                       +.+...     .| ..++.++|+| +|++|+++..      |+.++||+. +|+++...
T Consensus       136 -~~i~~~-----~~-~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  136 -KKISTF-----EH-SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             -EEeecc-----cc-CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence             333232     22 3478999999 8898888764      778999997 56666544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.1e-15  Score=111.63  Aligned_cols=186  Identities=15%  Similarity=0.233  Sum_probs=130.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||..+++.+.      .+.+|...++.++|..  ....+.+|+.||+|++||++........              
T Consensus        51 sv~lyd~~tg~~l~------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--------------  110 (376)
T KOG1188|consen   51 SVRLYDKGTGQLLE------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--------------  110 (376)
T ss_pred             eEEEEeccchhhhh------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--------------
Confidence            56778888877766      7888889999999976  4567889999999999999865332111              


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecC----CCcEEEEECCCCee-eEEEe-ccCccccccceeeEEECCCC-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----DHPIHLWDATTGLL-RCTYR-AYDAVDEITAAFSVAFNPTG-  185 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~i~d~~~~~~-~~~~~-~~~~~~~~~~v~~~~~~~~~-  185 (279)
                      ......+.+..++       +.+.+++.+++|..    +-.|.+||++..+. +..+. .|..     .|+++.|+|.. 
T Consensus       111 ~~~~~~~~~f~~l-------d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-----DVT~lrFHP~~p  178 (376)
T KOG1188|consen  111 SWTQQSGTPFICL-------DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-----DVTQLRFHPSDP  178 (376)
T ss_pred             eccCCCCCcceEe-------eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-----cceeEEecCCCC
Confidence            0111112344433       33446677777743    56799999998765 44433 3443     89999999986 


Q ss_pred             CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC-cEEEEEeCCCcEEEEecCCCeEE
Q 023672          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT-GMLAIGSYSQTSAIYREDNMELL  258 (279)
Q Consensus       186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~~l~~~~~dg~i~~wd~~~~~~~  258 (279)
                      ++|++| .||-|.|||++.....-....++     .|...|.++.|.. ++ ..|.+-+...+..+|++..+.+.
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-----N~~sSI~~igw~~-~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-----NHGSSIHLIGWLS-KKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhh-----cccceeeeeeeec-CCcceEEEEEccCceeEEEccCCChh
Confidence            566677 99999999998753322222333     5667799999988 55 45777788899999999877543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.67  E-value=9.3e-14  Score=113.26  Aligned_cols=196  Identities=26%  Similarity=0.426  Sum_probs=145.6

Q ss_pred             eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+|+... ...      ...+.+|...|.+++|+|++..+++++. |+.+++|++..+....                
T Consensus       135 ~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  192 (466)
T COG2319         135 TVKLWDLSTPGKL------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS----------------  192 (466)
T ss_pred             cEEEEEecCCCeE------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE----------------
Confidence            455566655 222      2267789999999999999998888885 9999999998632211                


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECCCCeeeE-EEeccCccccccceeeEEECCCCCEEEE
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                       ....+...+..+.|       +|++. .+++++.|+.|++||...+.... .+..+..     .. ...|+|++.++++
T Consensus       193 -~~~~~~~~v~~~~~-------~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~  258 (466)
T COG2319         193 -TLAGHTDPVSSLAF-------SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLAS  258 (466)
T ss_pred             -eeccCCCceEEEEE-------cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEE
Confidence             22226678888888       45666 55556999999999988777766 4555553     32 2289999977775


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe--ecCCC
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGG  267 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~  267 (279)
                      + .|+.+++|+++....   .....    .+|...+.++.|+| ++..+++++.|+.+.+||..+........  .|...
T Consensus       259 ~~~d~~~~~~~~~~~~~---~~~~~----~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (466)
T COG2319         259 GSSDGTIRLWDLRSSSS---LLRTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP  330 (466)
T ss_pred             ecCCCcEEEeeecCCCc---EEEEE----ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc
Confidence            5 999999999997432   11122    46788999999999 77788889889889999998887766665  77777


Q ss_pred             EEEEEEc
Q 023672          268 VTHVSKL  274 (279)
Q Consensus       268 v~~~~~s  274 (279)
                      +..+.|.
T Consensus       331 ~~~~~~~  337 (466)
T COG2319         331 VSSLSFS  337 (466)
T ss_pred             eEEEEEC
Confidence            8888883

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.9e-15  Score=121.40  Aligned_cols=230  Identities=13%  Similarity=0.109  Sum_probs=150.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCccccccccc----------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNAC----------  101 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----------  101 (279)
                      .+.+|...++.+.+      .+.+|...++.+.+.|..   .++.+++.||+|++||...+.+.......          
T Consensus        38 ~V~VyS~~Tg~~i~------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~  111 (792)
T KOG1963|consen   38 FVKVYSTATGECIT------SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKP  111 (792)
T ss_pred             EEEEEecchHhhhh------hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEech
Confidence            56778888888876      788999999999998844   36779999999999999887653221100          


Q ss_pred             cccCCC-----Cccc-ceee---ecCCCceEEE---------------EeeCcccccCCCCcEEEEecCCCcEEEEECCC
Q 023672          102 SLAKDQ-----DSYE-ASLV---VTEGESVYDF---------------CWFPHMSASDPTSCVFASTTRDHPIHLWDATT  157 (279)
Q Consensus       102 ~~~~~~-----~~~~-~~~~---~~~~~~v~~~---------------~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~  157 (279)
                      ..+...     .... ..+.   ..-...+...               .-.|.++..++.+.+.+..- +..+.+|+..+
T Consensus       112 ~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~  190 (792)
T KOG1963|consen  112 AQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPK  190 (792)
T ss_pred             hHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-eeeEEEEEecc
Confidence            000000     0000 0000   0000000000               00134555566665554443 55688888887


Q ss_pred             CeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc
Q 023672          158 GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (279)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  236 (279)
                      +. ...........+.-.+++.++||++++++++ .||.|.+|.--...........+    .=|...|.+++|++ +|.
T Consensus       191 ~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l----HWH~~~V~~L~fS~-~G~  264 (792)
T KOG1963|consen  191 HT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL----HWHHDEVNSLSFSS-DGA  264 (792)
T ss_pred             cc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE----EecccccceeEEec-CCc
Confidence            55 2222222222333357899999999999998 99999999654311111112223    56788999999999 999


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +|++|+..|.+-+|.+.+++ .+-|+--.++|..+.+||||-
T Consensus       265 ~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~  305 (792)
T KOG1963|consen  265 YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD  305 (792)
T ss_pred             eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC
Confidence            99999999999999999998 556666788999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=2.8e-14  Score=112.77  Aligned_cols=192  Identities=14%  Similarity=0.102  Sum_probs=118.5

Q ss_pred             CceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      +....++|+|++++|++++. ++.|.+|++++.......            .  ......       ..|..++++|+++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------------~--~~~~~~-------~~~~~~~~~p~g~  138 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------------I--QIIEGL-------EGCHSANIDPDNR  138 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------------e--eeccCC-------CcccEeEeCCCCC
Confidence            34678999999999887765 889999999743211000            0  000011       1234456688998


Q ss_pred             EEEEe-cCCCcEEEEECCCCeeeEE-----EeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeee
Q 023672          140 VFAST-TRDHPIHLWDATTGLLRCT-----YRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       140 ~l~s~-~~d~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~  211 (279)
                      +++++ ..++.|.+||+.+...+..     ......    ..+..+.|+|+++++++.  .++.|.+||+......++..
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence            88554 5568999999976332211     111111    146789999999999854  58999999998532223333


Q ss_pred             eeccccc--CCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCe----EEEEEeecCCCEEEEEEccCCCC
Q 023672          212 STLKGNK--EGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNME----LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       212 ~~~~~~~--~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..+....  ..+......+.++| ++.+|+++. .++.|.+|++....    .+..+.. ....+.++|+|||++
T Consensus       215 ~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~  287 (330)
T PRK11028        215 QTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKY  287 (330)
T ss_pred             EEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCE
Confidence            2221100  01122345689999 888887775 47889999986433    2222222 124568999999975

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=8.1e-15  Score=109.48  Aligned_cols=185  Identities=17%  Similarity=0.226  Sum_probs=127.1

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      -.+..++|++.-..+|++..|-.|++||-....                 ...+.......|.+++|.|.+      +..
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-----------------pt~Lks~sQrnvtclawRPls------ase  155 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-----------------PTKLKSVSQRNVTCLAWRPLS------ASE  155 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC-----------------CceecchhhcceeEEEeccCC------cce
Confidence            457889999977778999999999999976411                 112334445689999998762      336


Q ss_pred             EEEecCCCcEEEEECCCC-eeeEE---Ee-----ccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCcee
Q 023672          141 FASTTRDHPIHLWDATTG-LLRCT---YR-----AYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~-~~~~~---~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~  209 (279)
                      |+.|+..| |.+|..... ..-..   +.     .-...++ .+|++|.|.+||..++ ++ .|..|.|||..++. .. 
T Consensus       156 lavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~-  231 (445)
T KOG2139|consen  156 LAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KI-  231 (445)
T ss_pred             eeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-cc-
Confidence            77777665 888977531 11110   01     0111222 3899999999999888 55 89999999999841 11 


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                         .+.   ....+.+.-+.||| ++.+|++++-|+..++|+....-......-..+.|....|+|+|++
T Consensus       232 ---pL~---~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf  294 (445)
T KOG2139|consen  232 ---PLI---PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF  294 (445)
T ss_pred             ---ccc---ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence               111   12235688899999 8999999999999999965433222233334558999999999975

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.4e-14  Score=116.02  Aligned_cols=197  Identities=15%  Similarity=0.092  Sum_probs=122.2

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .+.+.++|.......       .+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++....             
T Consensus       183 ~~~l~i~D~~g~~~~-------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-------------  242 (433)
T PRK04922        183 RYALQVADSDGYNPQ-------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-------------  242 (433)
T ss_pred             eEEEEEECCCCCCce-------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence            445677776544332       344567789999999999999877643   469999997653211             


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEE-EecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                          +. ...+.....       .|+|+|+.|+ +.+.++  .|.+||+.+++... +..+..     .....+|+|+|+
T Consensus       243 ----l~-~~~g~~~~~-------~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~-----~~~~~~~spDG~  304 (433)
T PRK04922        243 ----VA-SFRGINGAP-------SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG-----IDTEPTWAPDGK  304 (433)
T ss_pred             ----ec-cCCCCccCc-------eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCC-----CccceEECCCCC
Confidence                10 011112223       4588998775 445555  59999998886543 322221     335789999999


Q ss_pred             EEE-Ee-cCCe--EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEE
Q 023672          187 KIF-AG-YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLY  259 (279)
Q Consensus       187 ~l~-~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~  259 (279)
                      .++ ++ .++.  |+++|+.++ . ...+ +.    .  ......++|+| ++..|+..+.++   .|.+||+.+++.. 
T Consensus       305 ~l~f~sd~~g~~~iy~~dl~~g-~-~~~l-t~----~--g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-  373 (433)
T PRK04922        305 SIYFTSDRGGRPQIYRVAASGG-S-AERL-TF----Q--GNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR-  373 (433)
T ss_pred             EEEEEECCCCCceEEEEECCCC-C-eEEe-ec----C--CCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-
Confidence            887 44 4454  666666542 1 1211 11    1  12344689999 777777654333   5999999888754 


Q ss_pred             EEeecCCCEEEEEEccCCCC
Q 023672          260 VLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       260 ~~~~~~~~v~~~~~spdg~~  279 (279)
                      .+. +........|+|||++
T Consensus       374 ~Lt-~~~~~~~p~~spdG~~  392 (433)
T PRK04922        374 TLT-PGSLDESPSFAPNGSM  392 (433)
T ss_pred             ECC-CCCCCCCceECCCCCE
Confidence            333 2234567899999974

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.6e-13  Score=108.53  Aligned_cols=188  Identities=9%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             CceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      +....++++|++++|++++ .++.|.+|++.........               .......       .|..++++|+++
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~---------------~~~~~~~-------~p~~i~~~~~g~   92 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA---------------AESPLPG-------SPTHISTDHQGR   92 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------------eeecCCC-------CceEEEECCCCC
Confidence            4577899999999887664 4788999998632110000               0000111       233356689999


Q ss_pred             EEEEecC-CCcEEEEECCC-Cee---eEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeee
Q 023672          140 VFASTTR-DHPIHLWDATT-GLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       140 ~l~s~~~-d~~i~i~d~~~-~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      ++++++. ++.|.+|++.+ +..   +..+...      ..+.+++++|++++++ +. .++.|.+||+.+.+. +....
T Consensus        93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~~  165 (330)
T PRK11028         93 FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL------EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQE  165 (330)
T ss_pred             EEEEEEcCCCeEEEEEECCCCCCCCceeeccCC------CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-ccccC
Confidence            8887764 88999999974 322   2222111      1456789999999887 45 789999999986322 11100


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecCC--C--eEEEEEeecC------CCEEEEEEccCCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDN--M--ELLYVLHGQE------GGVTHVSKLSSAYT  279 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~~--~--~~~~~~~~~~------~~v~~~~~spdg~~  279 (279)
                      ..... .........++|+| ++.+++++.. ++.|.+||+..  +  +.+..+..+.      .....+.|+|||++
T Consensus       166 ~~~~~-~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        166 PAEVT-TVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             CCcee-cCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            00000 01123466899999 8888877766 89999999973  3  3344443221      13346899999975

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=5.5e-14  Score=114.93  Aligned_cols=182  Identities=13%  Similarity=0.102  Sum_probs=116.0

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++....                 + ....+.+....     
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-----------------l-~~~~g~~~~~~-----  252 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-----------------V-GNFPGMTFAPR-----  252 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-----------------e-ecCCCcccCcE-----
Confidence            35567788999999999999887653   4689999998653310                 1 11122333444     


Q ss_pred             cccCCCCcEEE-EecCCCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCC
Q 023672          132 SASDPTSCVFA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP  204 (279)
Q Consensus       132 ~~~~~~~~~l~-s~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~  204 (279)
                        |+|+|+.|+ +.+.++.  |.+||+.++.... +..+..     ......|+|+|+.++ ++ .++  .|+++|+..+
T Consensus       253 --~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~-----~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        253 --FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPA-----IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             --ECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCC-----ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence              488998765 4555554  7788998876543 332222     345789999999887 44 333  6778887652


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                        ....+       ..+...+....|+| ++..|+..+.+   ..|.+||+.++.. ..+. ....+..+.|+|||++
T Consensus       325 --~~~~l-------t~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~  390 (435)
T PRK05137        325 --NPRRI-------SFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRV  390 (435)
T ss_pred             --CeEEe-------ecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCE
Confidence              12221       11233456688999 77777765543   3588889765543 3333 2235678899999973

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=8.2e-14  Score=113.38  Aligned_cols=181  Identities=13%  Similarity=0.092  Sum_probs=112.0

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +..+...+.+.+|+|||+.|+..+.   +..|.+|++.+++...                 +. ...+.+....      
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-----------------l~-~~~~~~~~~~------  249 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-----------------VA-SFPRHNGAPA------  249 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-----------------cc-CCCCCcCCeE------
Confidence            3345678999999999999886542   4578999987653211                 00 0111122334      


Q ss_pred             ccCCCCcEEEEe-cCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEE--EccCCC
Q 023672          133 ASDPTSCVFAST-TRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVF--DVHRPG  205 (279)
Q Consensus       133 ~~~~~~~~l~s~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~--d~~~~~  205 (279)
                       |+|||+.|+.. +.++  .|.+||+.+++....... ..     .+....|+|+|+.|+ ++ .++...+|  |+..+ 
T Consensus       250 -~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~-----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-  321 (429)
T PRK03629        250 -FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS-----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-  321 (429)
T ss_pred             -ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC-----CcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-
Confidence             48899888765 4444  588999988875443322 22     456899999999887 44 44544555  55442 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       ....+       ...........|+| +|..|+..+.+   ..|.+||+.+++.. .+... .......|+|||++
T Consensus       322 -~~~~l-------t~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~  387 (429)
T PRK03629        322 -APQRI-------TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTM  387 (429)
T ss_pred             -CeEEe-------ecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCE
Confidence             12221       11223355789999 77777665433   34888999888643 33321 23456889999973

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=5.5e-15  Score=117.02  Aligned_cols=133  Identities=19%  Similarity=0.259  Sum_probs=104.4

Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                      .+.|+|...+|++++ ...|++||+..+..++.+.....     .|..++++|.|..|++| .|+.+..||+.-+.++++
T Consensus       571 ~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k-----wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk  644 (733)
T KOG0650|consen  571 RVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK-----WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK  644 (733)
T ss_pred             EEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe-----eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH
Confidence            345677777777776 56799999998877777765554     88999999999888866 999999999987554444


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC------CC---eEEEEEeecCC----CEEEEEEccC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------NM---ELLYVLHGQEG----GVTHVSKLSS  276 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~------~~---~~~~~~~~~~~----~v~~~~~spd  276 (279)
                      .   +    .-|...+++++|++ .-.++++|+.||++.|+.-.      ..   -++..+++|..    +|.+..|||.
T Consensus       645 ~---l----r~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~  716 (733)
T KOG0650|consen  645 T---L----RLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR  716 (733)
T ss_pred             H---h----hhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence            3   3    57888999999999 88999999999999988532      22   25678888865    4899999985


Q ss_pred             C
Q 023672          277 A  277 (279)
Q Consensus       277 g  277 (279)
                      -
T Consensus       717 q  717 (733)
T KOG0650|consen  717 Q  717 (733)
T ss_pred             C
Confidence            3

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=4.1e-14  Score=115.18  Aligned_cols=183  Identities=15%  Similarity=0.143  Sum_probs=113.6

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++....                 +. ...+.+....      
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-----------------l~-~~~g~~~~~~------  246 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-----------------VA-NFKGSNSAPA------  246 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-----------------ee-cCCCCccceE------
Confidence            44567789999999999999877643   459999998664311                 11 1112223344      


Q ss_pred             ccCCCCcEEE-EecCCCcEEEE--ECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672          133 ASDPTSCVFA-STTRDHPIHLW--DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       133 ~~~~~~~~l~-s~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~  207 (279)
                       |+|||+.|+ +.+.++...+|  |+.++. ...+..+..     ......|+|||+.++ ++ .++...+|.+...+..
T Consensus       247 -~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~-----~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        247 -WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG-----IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             -ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC-----CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence             488998776 45677775555  454444 333332221     345678999999887 55 4566677766532222


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ...+ ..    .+  .......|+| +|.+|+..+.++   .|.+||+.+++... +... .......|+|||++
T Consensus       320 ~~~l-t~----~g--~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~  384 (427)
T PRK02889        320 AQRV-TF----TG--SYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRY  384 (427)
T ss_pred             eEEE-ec----CC--CCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCE
Confidence            2222 11    11  2234678999 888887766554   59999998887543 3322 33467899999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=3.1e-13  Score=101.25  Aligned_cols=139  Identities=12%  Similarity=0.220  Sum_probs=109.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .++++|+..+++++...   +...+...+.++++++.+.+||.  ....|.|.|||..+-+..                .
T Consensus       107 ~IyIydI~~MklLhTI~---t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v----------------~  167 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIE---TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV----------------N  167 (391)
T ss_pred             cEEEEecccceeehhhh---ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee----------------e
Confidence            47889999999988433   34456677888888888888883  334789999999864321                1


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                       ....|.+++.+++|       +++|.+||+++..|+ |||+.+.+|+.+..++....   ...|++++|+|++.+|+++
T Consensus       168 -~I~aH~~~lAalaf-------s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  168 -TINAHKGPLAALAF-------SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             -EEEecCCceeEEEE-------CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEEEEECCCCCeEEEe
Confidence             23367778888866       889999999999997 68999999999988875543   2278999999999999955


Q ss_pred             -cCCeEEEEEccC
Q 023672          192 -YNKSVRVFDVHR  203 (279)
Q Consensus       192 -~d~~i~~~d~~~  203 (279)
                       ..++|++|.+..
T Consensus       237 S~TeTVHiFKL~~  249 (391)
T KOG2110|consen  237 SNTETVHIFKLEK  249 (391)
T ss_pred             cCCCeEEEEEecc
Confidence             899999999875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=5.2e-15  Score=112.32  Aligned_cols=183  Identities=19%  Similarity=0.227  Sum_probs=123.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      -+++|+.+......      ....|.+.|.++.|+|||++|++-+.| ..+||+.+++........              
T Consensus       167 ~lRv~~~Ps~~t~l------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~--------------  225 (398)
T KOG0771|consen  167 TLRVWEWPSMLTIL------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP--------------  225 (398)
T ss_pred             eEEEEecCcchhhh------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC--------------
Confidence            36778877776655      677899999999999999999999999 899999998733221110              


Q ss_pred             eecCCCceEEEEeeCcccccCCCC-----cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTS-----CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                       .........+.|       +.++     ..++.....+.|+.|++.....-..++..........|.+++.+++|++++
T Consensus       226 -~~k~~~~~~cRF-------~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  226 -FSKDEMFSSCRF-------SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             -cccchhhhhcee-------cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence             111122233333       2222     223333445567776664322211122111111122789999999999999


Q ss_pred             Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      .| .||.|.|++..+-    +..   ......|...|+.+.|+| +.+.+++.+.|..+.|..+.-
T Consensus       298 lGT~dGsVai~~~~~l----q~~---~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  298 LGTMDGSVAIYDAKSL----QRL---QYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EeccCCcEEEEEecee----eee---EeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence            77 9999999999762    332   333378999999999999 889999999999888877643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=2.2e-15  Score=115.74  Aligned_cols=199  Identities=15%  Similarity=0.173  Sum_probs=142.8

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-------------ccCCCCcccceeeecCCCceEEEEeeC
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-------------LAKDQDSYEASLVVTEGESVYDFCWFP  129 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (279)
                      -..+.++.+|+.|+.|+.-|.|..+|+.++.+..+.....             ++....+++..+ -..+..+.|+.-+.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvY-D~~GtElHClk~~~  210 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVY-DNNGTELHCLKRHI  210 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEe-cCCCcEEeehhhcC
Confidence            3568889999999999999999999999887643322111             111122222211 12222333332211


Q ss_pred             --cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672          130 --HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (279)
Q Consensus       130 --~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~  206 (279)
                        ..+.|-|..-+|++++..|.++.-|+.+|+.+..+.....     .+..++-+|-+..+-.| ..|+|.+|..... .
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-----~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-e  284 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-----RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-E  284 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-----ccchhhcCCccceEEEcCCCceEEecCCCCc-c
Confidence              1234566777899999999999999999999988876654     67788889988877788 9999999999873 2


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++   ..+    -.|.++|.++++.+ +|.+++|.+.|..++|||+++...+.++.. ..+...++||.-|
T Consensus       285 PL---vKi----LcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  285 PL---VKI----LCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG  346 (545)
T ss_pred             hH---HHH----HhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc
Confidence            22   222    57899999999999 999999999999999999998876666554 3455666666544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.8e-14  Score=117.41  Aligned_cols=191  Identities=16%  Similarity=0.149  Sum_probs=120.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee-CCCeEEEE--eCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIF--SLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+++||+.++....    .....+|   ...++|+|||+.|+.++ .+|.+.||  |+.++...                
T Consensus       229 ~i~i~dl~tg~~~~----l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~----------------  285 (429)
T PRK01742        229 QLVVHDLRSGARKV----VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS----------------  285 (429)
T ss_pred             EEEEEeCCCCceEE----EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE----------------
Confidence            36677776654321    1123344   44689999999888764 68877666  44433210                


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                        ....+...+....|       +|+|+.|+.++ .++...||++... .....+ .+.      . ....|+|+|+.++
T Consensus       286 --~lt~~~~~~~~~~w-------SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~------~-~~~~~SpDG~~ia  348 (429)
T PRK01742        286 --QLTSGAGNNTEPSW-------SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR------G-YSAQISADGKTLV  348 (429)
T ss_pred             --eeccCCCCcCCEEE-------CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC------C-CCccCCCCCCEEE
Confidence              11112223444555       88898776554 5778888876532 222222 211      2 3578999999998


Q ss_pred             EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec--CCCeEEEEEeecCCC
Q 023672          190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGG  267 (279)
Q Consensus       190 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~  267 (279)
                      ......+.+||+.++. . ..   +.   ..+  ...++.|+| ++.+|+.++.++.+.+|++  .++..+..+..|.+.
T Consensus       349 ~~~~~~i~~~Dl~~g~-~-~~---lt---~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~  417 (429)
T PRK01742        349 MINGDNVVKQDLTSGS-T-EV---LS---STF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ  417 (429)
T ss_pred             EEcCCCEEEEECCCCC-e-EE---ec---CCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence            5533456669998732 1 11   11   111  124678999 8999999998998888876  367888889888888


Q ss_pred             EEEEEEccC
Q 023672          268 VTHVSKLSS  276 (279)
Q Consensus       268 v~~~~~spd  276 (279)
                      +..++|||-
T Consensus       418 ~~~p~wsp~  426 (429)
T PRK01742        418 VKFPAWSPY  426 (429)
T ss_pred             CCCcccCCC
Confidence            999999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.64  E-value=5.4e-15  Score=118.78  Aligned_cols=172  Identities=16%  Similarity=0.266  Sum_probs=129.2

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .|..++|-|||..|+.+.. ..+.+||.+.|...+                 ..-+|...|++++|       +.||..+
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq-----------------tLKgHKDtVycVAy-------s~dGkrF   68 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ-----------------PLKGHKDTVYCVAY-------AKDGKRF   68 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCccccc-----------------ccccccceEEEEEE-------ccCCcee
Confidence            7999999999998887764 479999999875533                 22456779999988       7899999


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  221 (279)
                      ++|+.|..|.+|+..- +-+..+. |..     .|.|+.|+|-...++++.=...-+|.....     ..  .+   ...
T Consensus        69 ASG~aDK~VI~W~~kl-EG~LkYS-H~D-----~IQCMsFNP~~h~LasCsLsdFglWS~~qK-----~V--~K---~ks  131 (1081)
T KOG1538|consen   69 ASGSADKSVIIWTSKL-EGILKYS-HND-----AIQCMSFNPITHQLASCSLSDFGLWSPEQK-----SV--SK---HKS  131 (1081)
T ss_pred             ccCCCceeEEEecccc-cceeeec-cCC-----eeeEeecCchHHHhhhcchhhccccChhhh-----hH--Hh---hhh
Confidence            9999999999998642 2222232 333     899999999999988664445667877651     11  11   122


Q ss_pred             CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe---ecCCCEEEEEEccCC
Q 023672          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVSKLSSA  277 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~spdg  277 (279)
                      ...+.+++|.. +|++|+.|-.||+|.+-+ .++++...+.   +.+.+|++++|+|..
T Consensus       132 s~R~~~CsWtn-DGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  132 SSRIICCSWTN-DGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             heeEEEeeecC-CCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCC
Confidence            45788999999 999999999999999876 4555544444   366799999999963

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.63  E-value=7.6e-15  Score=105.15  Aligned_cols=167  Identities=16%  Similarity=0.184  Sum_probs=115.3

Q ss_pred             CCCCceEEEEEcc-CCC--eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           58 IPNNFLKGIKWSP-DGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        58 ~h~~~v~~~~~~~-~~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      +..+.+.|..+.. +++  +|+.|-.+|.|.+||+.++...-..      +.. ..+..-...+..+|.++.|.+     
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~------~~~-~kv~~~~ash~qpvlsldyas-----  215 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL------PQS-SKVESPNASHKQPVLSLDYAS-----  215 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc------ccc-cccccchhhccCcceeeeech-----
Confidence            4457788888654 344  4557788999999999976221111      111 111112345667899988743     


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCee----eEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLL----RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~  209 (279)
                        ....=++|+.+..+..|.+.....    .........     .|..+.+-||++.++ +|-|+.||||..++. +   
T Consensus       216 --~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp-----Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~---  284 (323)
T KOG0322|consen  216 --SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP-----GVSGVRIRPDGKILATAGWDHRIRVYSWRTL-N---  284 (323)
T ss_pred             --hhcCCcCCCccccceeeeeccccCcccccceEEecCC-----CccceEEccCCcEEeecccCCcEEEEEeccC-C---
Confidence              222346677777888898864321    112222222     678899999999999 569999999999983 2   


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .+..+    +-|...|++++|+| +..++++++.|+.|.+|++
T Consensus       285 pLAVL----kyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  285 PLAVL----KYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhh----hhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            23333    68889999999999 8899999999999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=5.3e-14  Score=114.91  Aligned_cols=230  Identities=12%  Similarity=0.097  Sum_probs=147.7

Q ss_pred             ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672           31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD  108 (279)
Q Consensus        31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  108 (279)
                      .+.-.+.+||+.................|..+|+.+.|..+.  .-|++++.||.|..|+++.-...........     
T Consensus       262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~-----  336 (555)
T KOG1587|consen  262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES-----  336 (555)
T ss_pred             ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc-----
Confidence            344477889987766533333333567799999999997643  4599999999999998774332111111110     


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeee--EEEecc-CccccccceeeEEECCCC
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAY-DAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~  185 (279)
                      .............++.+.|.|.      +-..++.|+.+|.|.--+-...+..  ..++.+ ....+..+|+++.++|-+
T Consensus       337 ~~~~~~~~~~~~~~t~~~F~~~------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~  410 (555)
T KOG1587|consen  337 KKHKGQQSSKAVGATSLKFEPT------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY  410 (555)
T ss_pred             ccccccccccccceeeEeeccC------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc
Confidence            0000111223345677777654      3447899999999876443322111  112222 122333489999999987


Q ss_pred             CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC--eEEEEEe
Q 023672          186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLH  262 (279)
Q Consensus       186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~  262 (279)
                      ..++ ++.|-+++||.......+.   ..+    ..+...+++++|||.....++++..||.|.+||+...  +++.+..
T Consensus       411 ~k~fls~gDW~vriWs~~~~~~Pl---~~~----~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~  483 (555)
T KOG1587|consen  411 PKNFLSVGDWTVRIWSEDVIASPL---LSL----DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK  483 (555)
T ss_pred             cceeeeeccceeEeccccCCCCcc---hhh----hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence            6655 5579999999987322221   122    4556679999999988889999999999999999654  4555555


Q ss_pred             ecCCCEEEEEEccCCC
Q 023672          263 GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       263 ~~~~~v~~~~~spdg~  278 (279)
                      .+....+.+.|+++|+
T Consensus       484 ~~~~~l~~~~~s~~g~  499 (555)
T KOG1587|consen  484 VCSPALTRVRWSPNGK  499 (555)
T ss_pred             ccccccceeecCCCCc
Confidence            5555667777888775

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.61  E-value=1.1e-12  Score=106.92  Aligned_cols=200  Identities=24%  Similarity=0.352  Sum_probs=143.1

Q ss_pred             eeeEecCCCCc-ccceeeeeeccCCCC-CceEEEEE-ccCCC-eEEEeeC-CCeEEEEeCCC-CccccccccccccCCCC
Q 023672           35 PLIRFDVPPHR-TYHFYNQFRTSSIPN-NFLKGIKW-SPDGS-SFLTSSE-DKTLRIFSLPE-NGISYDVNACSLAKDQD  108 (279)
Q Consensus        35 ~~~~~d~~~~~-~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~t~~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~  108 (279)
                      .+.+|+..... ...      .+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ...              
T Consensus        88 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------------  147 (466)
T COG2319          88 TIKLWDLDNGEKLIK------SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL--------------  147 (466)
T ss_pred             cEEEEEcCCCceeEE------EEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE--------------
Confidence            45566665554 222      333322 36777777 78787 5555444 99999999985 211              


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-  186 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  186 (279)
                         ......+...|..+.|       +|++..+++++. |+.+++|++..+..+..+..+..     .+.+++|+|++. 
T Consensus       148 ---~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~  212 (466)
T COG2319         148 ---IRTLEGHSESVTSLAF-------SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-----PVSSLAFSPDGGL  212 (466)
T ss_pred             ---EEEEecCcccEEEEEE-------CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC-----ceEEEEEcCCcce
Confidence               1134456667777766       677878888885 99999999998888888877665     899999999997 


Q ss_pred             EEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE-EEEEeec
Q 023672          187 KIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQ  264 (279)
Q Consensus       187 ~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~  264 (279)
                      .+++ +.|+.+++||...+    .....   ...+|.... ...|+| ++.++++++.|+.+++|+++.... +..+..|
T Consensus       213 ~~~~~~~d~~i~~wd~~~~----~~~~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTG----KLLRS---TLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH  283 (466)
T ss_pred             EEEEecCCCcEEEEECCCC----cEEee---ecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence            5555 59999999988742    22221   125666654 338999 778888999999999999987664 5555678


Q ss_pred             CCCEEEEEEccCCC
Q 023672          265 EGGVTHVSKLSSAY  278 (279)
Q Consensus       265 ~~~v~~~~~spdg~  278 (279)
                      ...|.++.|+|++.
T Consensus       284 ~~~v~~~~~~~~~~  297 (466)
T COG2319         284 SSSVLSVAFSPDGK  297 (466)
T ss_pred             CccEEEEEECCCCC
Confidence            88999999999654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.1e-13  Score=116.45  Aligned_cols=218  Identities=16%  Similarity=0.168  Sum_probs=133.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||...++.+..+..   -......|+.+.+-.  |..++++|+.||.|+||+--....... .....   - ....
T Consensus      1087 ~i~vwd~e~~~~l~~F~n---~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~-eLVTa---w-~~Ls 1158 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDN---GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP-ELVTA---W-SSLS 1158 (1387)
T ss_pred             eEEEEecccCceeccccC---CCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc-eeEEe---e-cccc
Confidence            567788877777653332   223456799999855  556899999999999997543211000 00000   0 0000


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC-CCCCEEEEe
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIFAG  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  191 (279)
                      .......+.=.-+.|       .....+|++++.-..|+|||+..-.....+.....    ..|+++.-+ +.|+.+++|
T Consensus      1159 ~~~~~~r~~~~v~dW-------qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~----t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1159 DQLPGARGTGLVVDW-------QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS----TLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred             ccCccCCCCCeeeeh-------hhhCCeEEecCCeeEEEEEecccceeEeecccCCC----ccceeecccccCCceEEEe
Confidence            000011111133344       44555666666688999999988777777665432    255665443 236888999


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCc--eEEEEEccCCCc-EEEEEeCCCcEEEEecCCCeEE--EEEeecC
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI--MSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELL--YVLHGQE  265 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~  265 (279)
                       .||.|++||.|..... ..+...    ..|...  |..+.+.+ +|. .|++|+.||.|++||+|.....  ..+..|.
T Consensus      1228 faDGsvRvyD~R~a~~d-s~v~~~----R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPD-SLVCVY----REHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred             ecCCceEEeecccCCcc-ccceee----cccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence             9999999999985332 122222    466665  99999998 554 5999999999999999984222  2222232


Q ss_pred             --C-CEEEEEEccCC
Q 023672          266 --G-GVTHVSKLSSA  277 (279)
Q Consensus       266 --~-~v~~~~~spdg  277 (279)
                        + .+++|..|++.
T Consensus      1302 ~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHA 1316 (1387)
T ss_pred             ccCccceeeeeccCC
Confidence              2 37777777654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.6e-14  Score=112.02  Aligned_cols=211  Identities=15%  Similarity=0.234  Sum_probs=137.1

Q ss_pred             CCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCcccccccc------ccccC---------C---------------
Q 023672           58 IPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNA------CSLAK---------D---------------  106 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~------~~~~~---------~---------------  106 (279)
                      .|...-+.|..+|||+|+ |||..-..|++||+.+..+..+...      ...+.         .               
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            567778899999999976 5788899999999987644111000      00000         0               


Q ss_pred             ------------CCcccc-eeeecCCCceEEEEe------eC--------cccccCCCCcEEEEecCCCcEEEEECCCCe
Q 023672          107 ------------QDSYEA-SLVVTEGESVYDFCW------FP--------HMSASDPTSCVFASTTRDHPIHLWDATTGL  159 (279)
Q Consensus       107 ------------~~~~~~-~~~~~~~~~v~~~~~------~~--------~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~  159 (279)
                                  ...+.+ .+..+.+..|+.+-.      .|        .++.+++...+|++|+.+|.|..||.++..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                        000000 111122222322211      01        134567777899999999999999999887


Q ss_pred             eeEEEeccCc------cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672          160 LRCTYRAYDA------VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       160 ~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (279)
                      .+..+.....      ......|+++.|+.+|-.+++| .+|.+.+||+++. +++-    .  ...+..-+|..+.|.+
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~----~--kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLL----V--KDHGYELPIKKLDWQD  281 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-Ccee----e--cccCCccceeeecccc
Confidence            7666654332      1222359999999999999988 9999999999983 2221    1  1133456899999988


Q ss_pred             CCC-cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          233 THT-GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       233 ~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      .++ ..+++ .....++|||-.+|+....+.. ...+..+++-|++
T Consensus       282 ~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s  325 (703)
T KOG2321|consen  282 TDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS  325 (703)
T ss_pred             cCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCC
Confidence            433 34444 4456799999999998888774 4458888888764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1.2e-13  Score=99.81  Aligned_cols=91  Identities=16%  Similarity=0.295  Sum_probs=71.9

Q ss_pred             ceeeEEECCCCCEEE--Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CCcEE
Q 023672          175 AAFSVAFNPTGTKIF--AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSA  248 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~--~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg~i~  248 (279)
                      +|.+++|+|+|+.++  .| .+..|.+||++.     +.+..+      +...+..+.|+| +|++|++++.   .|.|.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~------~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSF------GTQPRNTISWSP-DGRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEee------cCCCceEEEECC-CCCEEEEEEccCCCcEEE
Confidence            699999999998876  35 678999999973     333333      134678899999 8999998864   46699


Q ss_pred             EEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          249 IYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       249 ~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +||+++.+.+.... |. .++.++|+|||+|
T Consensus       129 ~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~  157 (194)
T PF08662_consen  129 FWDVRKKKKISTFE-HS-DATDVEWSPDGRY  157 (194)
T ss_pred             EEECCCCEEeeccc-cC-cEEEEEEcCCCCE
Confidence            99999999887776 33 4789999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.5e-13  Score=109.10  Aligned_cols=172  Identities=14%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             CceEEEEEccCCCeEEEe-eCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           61 NFLKGIKWSPDGSSFLTS-SEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      +.+..++|+|||+.|+.. +.+|  .|.+||+.++....                 + ......+....|       +|+
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-----------------l-t~~~~~~~~~~w-------SPD  297 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-----------------V-TDGRSNNTEPTW-------FPD  297 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-----------------c-cCCCCCcCceEE-------CCC
Confidence            345578999999988754 4455  48888987653311                 1 111123344444       889


Q ss_pred             CcEEEEecCC-C--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC--CeEEEEEccCCCCceee
Q 023672          138 SCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN--KSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       138 ~~~l~s~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d--~~i~~~d~~~~~~~~~~  210 (279)
                      |+.|+..+.+ +  .|.++|+.+++.. .+.....     ......|+|+|+.++ ++ .+  ..|.+||+.++ . .. 
T Consensus       298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~-  368 (429)
T PRK03629        298 SQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-----QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQ-  368 (429)
T ss_pred             CCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-----CccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eE-
Confidence            9988776654 4  4555577766543 3322222     345789999999887 44 33  45888998763 1 11 


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc---EEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT---SAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~---i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                        .+..   .  .......|+| +|.+|+.++.++.   +.++++ ++.....+..|.+.+...+|+|
T Consensus       369 --~Lt~---~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        369 --VLTD---T--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             --EeCC---C--CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence              2211   1  1233578999 8888888877764   677776 5666677888888899999998

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=1e-13  Score=104.53  Aligned_cols=187  Identities=18%  Similarity=0.256  Sum_probs=129.7

Q ss_pred             ceEEEEEccCC-CeEEEeeCC--CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           62 FLKGIKWSPDG-SSFLTSSED--KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        62 ~v~~~~~~~~~-~~l~t~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .+..|.-++.. ..+|+|+..  ..++|||++............    .+.    +...-.-.++++.|.+.    +| .
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp----nD~----L~LrVPvW~tdi~Fl~g----~~-~  216 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP----NDR----LGLRVPVWITDIRFLEG----SP-N  216 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC----Ccc----ccceeeeeeccceecCC----CC-C
Confidence            34555555533 456679988  889999998763322111111    000    11111223445555332    11 6


Q ss_pred             cEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          139 CVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ..|++++.-+.+++||.+.+ +++..+.....     ++.++...|+++++++| .-+.+..||++.+    +   ....
T Consensus       217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----k---l~g~  284 (412)
T KOG3881|consen  217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----K---LLGC  284 (412)
T ss_pred             ceEEEEecceeEEEecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccchhheecccCc----e---eecc
Confidence            68999999999999999875 56777776665     89999999999999988 8899999999984    1   2222


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      .+.+..+.|.++..+| ...+|++++-|..+||+|+.+.+++...- -...++++.+.+
T Consensus       285 ~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~  341 (412)
T KOG3881|consen  285 GLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD  341 (412)
T ss_pred             ccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence            2367788999999999 89999999999999999999977664432 123345555544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=2.3e-13  Score=100.17  Aligned_cols=181  Identities=16%  Similarity=0.227  Sum_probs=129.9

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCC-ccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ...++..|...|+++.|+|..+.|++++.|..-.||....+ .....               ..........+++.|   
T Consensus        47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt---------------lvLlRiNrAAt~V~W---  108 (361)
T KOG1523|consen   47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT---------------LVLLRINRAATCVKW---  108 (361)
T ss_pred             eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc---------------eeEEEeccceeeEee---
Confidence            33478889999999999999999999999999999998433 22111               134556678899988   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC-----
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP-----  204 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~-----  204 (279)
                          +|.++.||+|+....|.||-.+..+.-..-+ |-.+.....|.+++|+|++-++++| .|+..+||..--.     
T Consensus       109 ----sP~enkFAVgSgar~isVcy~E~ENdWWVsK-hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek  183 (361)
T KOG1523|consen  109 ----SPKENKFAVGSGARLISVCYYEQENDWWVSK-HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK  183 (361)
T ss_pred             ----cCcCceEEeccCccEEEEEEEecccceehhh-hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccC
Confidence                7789999999999999999887544321111 1111112378999999999999977 8999999865310     


Q ss_pred             --CCcee---eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          205 --GRDFE---KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       205 --~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                        ..+..   .+..+........+.+..+.|+| .|..|+-.+.|..+.+-|.....
T Consensus       184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCc
Confidence              00000   11111122234567899999999 99999999999999999876553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=3.4e-13  Score=115.17  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=128.2

Q ss_pred             ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCccc
Q 023672           55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMS  132 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  132 (279)
                      .+.-|...|..++.+++. .+|+|||.||+|++|+..+-......           ...... ...+..+..+..     
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-----------~rS~ltys~~~sr~~~vt~----- 1106 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-----------ARSELTYSPEGSRVEKVTM----- 1106 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-----------eeeeEEEeccCCceEEEEe-----
Confidence            456688889999987754 89999999999999999753221111           111111 224556666654     


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCee--eE-E-EeccCccccccceeeEEECCC-CC-EEEEe-cCCeEEEEEccCCC
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLL--RC-T-YRAYDAVDEITAAFSVAFNPT-GT-KIFAG-YNKSVRVFDVHRPG  205 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~--~~-~-~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~-~d~~i~~~d~~~~~  205 (279)
                        -+++..+|.++.||.|.+.++..-+.  .. . ...........-|..-+|... +. .++.+ .-+.|..||+++..
T Consensus      1107 --~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1107 --CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred             --ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence              45788999999999999999875211  10 0 011111111112333344332 22 44444 88999999999742


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccC
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSS  276 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spd  276 (279)
                      .    ...++.  .-..+.|++++.+| .+.+++.|+..|.+.+||+|-+.++..... +..+++.+..+|-
T Consensus      1185 ~----~w~lk~--~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1185 D----AWRLKN--QLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred             h----HHhhhc--CccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence            1    112211  23356899999999 999999999999999999999888877663 3467777777663

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=5.3e-12  Score=94.71  Aligned_cols=193  Identities=15%  Similarity=0.192  Sum_probs=118.9

Q ss_pred             CCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...|+|++|-|. ++.|+.|+..| |.+|............  ....  ......+......+|+++.|       ++||
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~--~~~s--~~~~qvl~~pgh~pVtsmqw-------n~dg  207 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI--RMMS--THHLQVLQDPGHNPVTSMQW-------NEDG  207 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc--cccc--ccchhheeCCCCceeeEEEE-------cCCC
Confidence            356999999994 46788888765 8999886432111100  0000  00011122223358999988       6678


Q ss_pred             cEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          139 CVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       139 ~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ..+++++. |..|.|||+.++..+........     .+.-+.|+||+.++++. .|+..++|+....-. .+.. .   
T Consensus       208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw-~---  277 (445)
T KOG2139|consen  208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERW-I---  277 (445)
T ss_pred             CEEeecccCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecccceeeeehhcccce-ecce-e---
Confidence            88888875 56899999999887655532222     67789999999999866 999999997654210 0111 1   


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC----Ce-----------EEEEE------ee---cCCCEEEEE
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----ME-----------LLYVL------HG---QEGGVTHVS  272 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~----~~-----------~~~~~------~~---~~~~v~~~~  272 (279)
                         -..+.|...+|+| .|.+|+.++. |.-++|.+.-    +.           ++..+      .+   ..+++.+|+
T Consensus       278 ---lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la  352 (445)
T KOG2139|consen  278 ---LGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA  352 (445)
T ss_pred             ---ccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence               1134899999999 6665554442 3334554421    10           11111      11   135788999


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      |.|.|.|
T Consensus       353 wDpsGey  359 (445)
T KOG2139|consen  353 WDPSGEY  359 (445)
T ss_pred             ECCCCCE
Confidence            9999865

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=5.9e-12  Score=92.83  Aligned_cols=205  Identities=12%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccc----------------ccccccccCCCC------cccceeeecCCC
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY----------------DVNACSLAKDQD------SYEASLVVTEGE  120 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~~------~~~~~~~~~~~~  120 (279)
                      ..+++|+.|...+++|..+| .+||+.+.-+...                ..+.+.+..+..      ..+....-....
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            34588999988888888776 6888886432200                000000000111      001111111222


Q ss_pred             ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC-CCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEE
Q 023672          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR  197 (279)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~  197 (279)
                      .|..+.|...-.++.-....|++.- .+.|++|... +.+.+..+.....+.   ...+++=+.+..+|+ -| .-|.|.
T Consensus        87 ~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk---GlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   87 CIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK---GLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             EEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCC---ceEeecCCCCceEEEcCCCccceEE
Confidence            3333333221111111222444443 6789999987 456666665444222   333333333334555 36 779999


Q ss_pred             EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-EEEEecCCCeEEEEEeec--CCCEEEEEEc
Q 023672          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQ--EGGVTHVSKL  274 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~--~~~v~~~~~s  274 (279)
                      |-|+......  ....+    .+|.+.|.|++++. .|.++||+|..|+ |||||..+|+++..++--  ...|.+|+||
T Consensus       163 i~dL~~~~~~--~p~~I----~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  163 IVDLASTKPN--APSII----NAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             EEEhhhcCcC--CceEE----EcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            9999863211  11222    69999999999999 9999999999998 899999999999998743  2479999999


Q ss_pred             cCCCC
Q 023672          275 SSAYT  279 (279)
Q Consensus       275 pdg~~  279 (279)
                      ||+.+
T Consensus       236 p~~s~  240 (346)
T KOG2111|consen  236 PNSSW  240 (346)
T ss_pred             CCccE
Confidence            99864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.56  E-value=4.3e-13  Score=106.23  Aligned_cols=185  Identities=14%  Similarity=0.132  Sum_probs=132.7

Q ss_pred             cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc-------ccccCCCCcEEE
Q 023672           70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH-------MSASDPTSCVFA  142 (279)
Q Consensus        70 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~l~  142 (279)
                      |...++|....||.++||+...++...+........+........        ..+..+|-       ...-+.+...++
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~--------L~~~~s~~k~~~~~~~~~~s~~t~~lv   74 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG--------LSADYSPMKWLSLEKAKKASLDTSMLV   74 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE--------EEeccchHHHHhHHHHhhccCCceEEE
Confidence            456789999999999999999887654433322211111100000        11111221       001244556788


Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  221 (279)
                      -|...|.|-+|++..++....+......   ..|.++.++.+-..|.++ .|..+..|+....    ..+...    ...
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~h~---~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~----~~~  143 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDKHY---GNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIW----KEQ  143 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCCCC---CcceeeecccccCceEecCCceeEEEEecccc----eeeeee----ccC
Confidence            8999999999999999998888754332   378899989888888855 9999999999872    222222    344


Q ss_pred             CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ...+.+++.+| ++..|++++  +.|++||+.+++.+.+|.+|.++|++++|..+
T Consensus       144 ~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  144 KPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             CCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            56788999999 788999886  78999999999999999999999999999865

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=4.9e-14  Score=104.71  Aligned_cols=214  Identities=13%  Similarity=0.185  Sum_probs=142.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc-cCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .+-|.++.|...|.+||||..+|.|.+|.-...... +...... ......+.......-.+.|..+.|.+.     .+.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-----~n~   98 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-----GNL   98 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-----CCc
Confidence            356899999999999999999999999987643221 1111110 011112222223333457888888553     345


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeE--------------------EEeccC-----------ccccccceeeEEECCCCCE
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRC--------------------TYRAYD-----------AVDEITAAFSVAFNPTGTK  187 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~--------------------~~~~~~-----------~~~~~~~v~~~~~~~~~~~  187 (279)
                      ..++....|.+|++|.+.......                    .+..+.           ...|..-|.+++++.|...
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            567777889999999986432111                    010000           0123346889999999999


Q ss_pred             EEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE------EEEE
Q 023672          188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------LYVL  261 (279)
Q Consensus       188 l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~------~~~~  261 (279)
                      ++++.|-.|.+|++.-..+.+..+-.-+..+..-..-|++..|+|....+++-.+..|+|++-|+|...+      +...
T Consensus       179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            9999999999999987666665554444444444567899999997778899999999999999995431      1111


Q ss_pred             e----------ecCCCEEEEEEccCCCC
Q 023672          262 H----------GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       262 ~----------~~~~~v~~~~~spdg~~  279 (279)
                      +          .--..|.++.|+++|||
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGry  286 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRY  286 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcE
Confidence            1          11136889999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.5e-12  Score=107.65  Aligned_cols=198  Identities=13%  Similarity=0.183  Sum_probs=140.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      ...+|+.+...  ...........|.-.++|.+++|+++++|+|..||.|.+|.--..             ..+......
T Consensus       182 ~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------------~~~~~t~t~  246 (792)
T KOG1963|consen  182 KIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------------SDDSETCTL  246 (792)
T ss_pred             eEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------------ccccccceE
Confidence            34566666544  222233345567777999999999999999999999999975431             122233334


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d  193 (279)
                      .-.|...|.++.|       +++|.+|++|+..+.+.+|.+.+++ .+-++.-..     +|..+.++||+.+.+. ..|
T Consensus       247 lHWH~~~V~~L~f-------S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  247 LHWHHDEVNSLSF-------SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             EEecccccceeEE-------ecCCceEeecccceEEEEEeecCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecC
Confidence            4556667877766       7899999999999999999999988 344443343     8999999999998884 499


Q ss_pred             CeEEEEEccCCCCceeeeeecccc----cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGN----KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      ..|.+....+.. ....+..+...    .....+-.+.++++| ....++-.+..|.|.+||+-+.+.++.+.
T Consensus       314 NqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  314 NQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             ceEEEEeccchh-hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEE
Confidence            999998775421 11111111111    123355678899999 88888888999999999998877666554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=4e-12  Score=103.90  Aligned_cols=182  Identities=16%  Similarity=0.145  Sum_probs=114.5

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .+..+...+...+|+|||++|+.++.+   ..|.+||+.++....                  .......+....|    
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------------~~~~~~~~~~~~~----  241 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------------VASFPGMNGAPAF----  241 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------------------eecCCCCccceEE----
Confidence            344566678999999999999877653   479999998653211                  1111223333444    


Q ss_pred             cccCCCCcEEEE-ecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCC
Q 023672          132 SASDPTSCVFAS-TTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP  204 (279)
Q Consensus       132 ~~~~~~~~~l~s-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~  204 (279)
                         +|+++.|+. .+.++  .|.+||+.++..... ..+..     ......|+|+++.|+ ++ .++  .|+++|+.++
T Consensus       242 ---spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~-----~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       242 ---SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TNGPG-----IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             ---CCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CCCCC-----CCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence               788887654 44444  588999987754332 22221     334678999998887 44 333  5777777652


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       . ..   .+    ..+...+..+.|+| ++.+|+.++.++   .|.+||+.++... .+... .......|+|||++
T Consensus       313 -~-~~---~l----~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~  378 (417)
T TIGR02800       313 -E-VR---RL----TFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRM  378 (417)
T ss_pred             -C-EE---Ee----ecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCE
Confidence             1 11   11    12234566789999 788888777665   7899999876542 33322 23456789999863

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=6.7e-13  Score=111.96  Aligned_cols=196  Identities=14%  Similarity=0.162  Sum_probs=130.2

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      ..-+++||...-..++.     ...+-...|+++.-+. .|+.++.|-.||.|++||.+-....             ..+
T Consensus      1186 ~r~IRIWDa~~E~~~~d-----iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------------s~v 1247 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVAD-----IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------------SLV 1247 (1387)
T ss_pred             eeEEEEEecccceeEee-----cccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------------ccc
Confidence            44678899887766552     3444556688877654 5789999999999999998743211             111


Q ss_pred             ceeeecCCCc--eEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          112 ASLVVTEGES--VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       112 ~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                      . ..-.|...  |..+.+.+.     ..+ .|++|+.+|.|++||++.......+.........+..+++..++....++
T Consensus      1248 ~-~~R~h~~~~~Iv~~slq~~-----G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1248 C-VYREHNDVEPIVHLSLQRQ-----GLG-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred             e-eecccCCcccceeEEeecC-----CCc-ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee
Confidence            1 22223333  666665332     122 69999999999999999753222222222111111478999999999999


Q ss_pred             EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       190 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      +|..+.|+||++..  .....+.....-+....+.+.|++|+| ..-+|++|+.|.+|.||.....+
T Consensus      1321 sGs~q~ikIy~~~G--~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLSG--EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ecCcceEEEEecCh--hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence            98669999999974  222222222222233345679999999 88899999999999999876543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=6e-12  Score=89.56  Aligned_cols=154  Identities=12%  Similarity=0.145  Sum_probs=109.9

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      -.|++|...|..+-+++++.|+.+.-||+++++...                 ...+|...|.++.-       ......
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-----------------~~rGHtDYvH~vv~-------R~~~~q  170 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-----------------EYRGHTDYVHSVVG-------RNANGQ  170 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-----------------EEcCCcceeeeeee-------cccCcc
Confidence            358999999977777777789999999999886533                 33455566666643       123346


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccc-----cceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecc
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI-----TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      +++|+.||++++||.++++.+..+.........     ..|.+  ..-+..++++|....+.+|.++..    ++...+ 
T Consensus       171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgGp~lslwhLrss----e~t~vf-  243 (325)
T KOG0649|consen  171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGGPKLSLWHLRSS----ESTCVF-  243 (325)
T ss_pred             eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCCCceeEEeccCC----CceEEE-
Confidence            889999999999999999999888766543221     13434  445667999999999999999973    222222 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                          .-..++..+.|..   ..++++++.+.+.-|.+
T Consensus       244 ----pipa~v~~v~F~~---d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  244 ----PIPARVHLVDFVD---DCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             ----ecccceeEeeeec---ceEEEeccccceeeeee
Confidence                2234577788855   46777777777888875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=2.1e-13  Score=106.92  Aligned_cols=95  Identities=21%  Similarity=0.351  Sum_probs=80.2

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .+.|+..+|+|||++||+.+.||.++|||..+..+....                 -..-+...+++|       +|||+
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-----------------kSYFGGLLCvcW-------SPDGK  345 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-----------------KSYFGGLLCVCW-------SPDGK  345 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-----------------HhhccceEEEEE-------cCCcc
Confidence            457899999999999999999999999999875442211                 112257889999       88999


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP  183 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (279)
                      +|++|+.|..|.||.+..++.+..-..|..     +|..++|.|
T Consensus       346 yIvtGGEDDLVtVwSf~erRVVARGqGHkS-----WVs~VaFDp  384 (636)
T KOG2394|consen  346 YIVTGGEDDLVTVWSFEERRVVARGQGHKS-----WVSVVAFDP  384 (636)
T ss_pred             EEEecCCcceEEEEEeccceEEEecccccc-----ceeeEeecc
Confidence            999999999999999999998888777776     999999997

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.1e-11  Score=101.50  Aligned_cols=181  Identities=14%  Similarity=0.083  Sum_probs=109.9

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +..+...+...+|+|||+.|+..+.+   ..|.+|++.++....                 + ....+.+....      
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-----------------l-~~~~g~~~~~~------  249 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-----------------I-TNFEGLNGAPA------  249 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-----------------c-cCCCCCcCCeE------
Confidence            44566788999999999999876543   368889998653311                 0 00111222333      


Q ss_pred             ccCCCCcEEEE-ecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCC
Q 023672          133 ASDPTSCVFAS-TTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPG  205 (279)
Q Consensus       133 ~~~~~~~~l~s-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~  205 (279)
                       |+|+|+.|+. .+.++  .|.+||+.+++... +..+..     ......|+|+|+.++ ++ .++  .|+++|+.++ 
T Consensus       250 -~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~-----~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-  321 (430)
T PRK00178        250 -WSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA-----IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-  321 (430)
T ss_pred             -ECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-
Confidence             4889987764 44454  58888998876543 322222     345678999998877 44 444  5777777653 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      . ...+ ..    .+  .......|+| ++..|+..+. ++  .|.+||+.+++.. .+.. ........|+|||++
T Consensus       322 ~-~~~l-t~----~~--~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~  387 (430)
T PRK00178        322 R-AERV-TF----VG--NYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTM  387 (430)
T ss_pred             C-EEEe-ec----CC--CCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCE
Confidence            2 2221 11    11  1234578999 7777766554 33  4888999887643 3332 222335689999973

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=5.5e-12  Score=102.47  Aligned_cols=183  Identities=15%  Similarity=0.099  Sum_probs=104.3

Q ss_pred             CCCCceEEEEEccCCCe--E-EEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           58 IPNNFLKGIKWSPDGSS--F-LTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~--l-~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .....+..-+|+|||+.  + ++...+|  .|.+.++.++....                 +.. ..+.....       
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-----------------lt~-~~g~~~~p-------  236 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-----------------ILA-LQGNQLMP-------  236 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-----------------eec-CCCCccce-------
Confidence            34455678899999975  2 2444444  46666776543211                 111 11122223       


Q ss_pred             ccCCCCcEEEEecC-CC----cEEEEECCCC---eeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEE--
Q 023672          133 ASDPTSCVFASTTR-DH----PIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFD--  200 (279)
Q Consensus       133 ~~~~~~~~l~s~~~-d~----~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d--  200 (279)
                      +++|||+.|+..+. +|    .+..|++..+   +..........     .....+|+|||+.|+ ++ .++...+|.  
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-----~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-----TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            45889988876543 22    3444777653   32222222111     235689999999877 55 566555554  


Q ss_pred             ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      +...+....   .+    ..+...+....|+| +|..|+..+.+   ..|.+||+.+++... +......+....|+|||
T Consensus       312 ~~~~g~~~~---~l----t~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG  382 (428)
T PRK01029        312 IDPEGQSPR---LL----TKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS  382 (428)
T ss_pred             CcccccceE---Ee----ccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC
Confidence            432111111   11    22234567889999 77777655433   359999998887643 33333456789999999


Q ss_pred             CC
Q 023672          278 YT  279 (279)
Q Consensus       278 ~~  279 (279)
                      ++
T Consensus       383 ~~  384 (428)
T PRK01029        383 LH  384 (428)
T ss_pred             CE
Confidence            73

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=8.6e-12  Score=102.04  Aligned_cols=190  Identities=16%  Similarity=0.120  Sum_probs=114.9

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCC--eEEEEeCCCCccccccccccccCCCCcccc
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      +++||+.++...       .+..+.+...+++|+|||+.|+ +.+.+|  .|.+||+.++....                
T Consensus       230 l~~~dl~~g~~~-------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----------------  286 (433)
T PRK04922        230 IYVQDLATGQRE-------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----------------  286 (433)
T ss_pred             EEEEECCCCCEE-------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------
Confidence            556666555432       2223344456789999999776 455555  58889988654311                


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                       + ..+........       |+|+|+.|+.++. ++.  |.++|+.+++.... .....     .....+|+|+|+.++
T Consensus       287 -l-t~~~~~~~~~~-------~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~-----~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        287 -L-TNHFGIDTEPT-------WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGN-----YNARASVSPDGKKIA  351 (433)
T ss_pred             -C-ccCCCCccceE-------ECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCC-----CccCEEECCCCCEEE
Confidence             1 11111223334       4889988877653 444  77778777654332 22222     334689999999988


Q ss_pred             E-e-cC--CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEe
Q 023672          190 A-G-YN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLH  262 (279)
Q Consensus       190 ~-~-~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~  262 (279)
                      . . .+  ..|.+||+.++ .. .   .+.     +........|+| ++.+|+..+.+   +.|.++++. +.....+.
T Consensus       352 ~~~~~~~~~~I~v~d~~~g-~~-~---~Lt-----~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~  419 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTG-SV-R---TLT-----PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTD-GRVRQRLV  419 (433)
T ss_pred             EEECCCCceeEEEEECCCC-Ce-E---ECC-----CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEEcc
Confidence            3 3 33  26999999763 21 1   221     111234578999 77776665543   357788874 44556666


Q ss_pred             ecCCCEEEEEEcc
Q 023672          263 GQEGGVTHVSKLS  275 (279)
Q Consensus       263 ~~~~~v~~~~~sp  275 (279)
                      .+.+.+...+|+|
T Consensus       420 ~~~g~~~~p~wsp  432 (433)
T PRK04922        420 SADGEVREPAWSP  432 (433)
T ss_pred             cCCCCCCCCccCC
Confidence            6667788889987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=7.1e-12  Score=94.78  Aligned_cols=191  Identities=15%  Similarity=0.211  Sum_probs=134.4

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .++.|..++.. | ..|++|-.+|.+.+|....+-...            ..  .+....+..+..+.-.+.      ..
T Consensus       104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hs------------s~--l~~la~g~g~~~~r~~~~------~p  161 (412)
T KOG3881|consen  104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHS------------SK--LIKLATGPGLYDVRQTDT------DP  161 (412)
T ss_pred             ccccccchhhc-C-CEEEEEecCCcEEEEeccCCcccc------------cc--ceeeecCCceeeeccCCC------CC
Confidence            34455555443 3 367888889999999988543210            00  122333344555543222      34


Q ss_pred             cEEEEecCC--CcEEEEECCCCeeeEEEeccCcc--c--cccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          139 CVFASTTRD--HPIHLWDATTGLLRCTYRAYDAV--D--EITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       139 ~~l~s~~~d--~~i~i~d~~~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                      .++++|+..  ..+++||+++.+.+..-+.....  +  -+-+++++.|-+.  ...++++ .-+.+++||.+.+.+|+.
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            477779988  78999999988655443322110  0  1126778889887  6777755 899999999998766665


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~~  279 (279)
                      .+.       --..+++++...| ++.++++|..-+.+..||++.++.+.. +.+..+.|+++..+|.+++
T Consensus       242 ~fd-------~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~  304 (412)
T KOG3881|consen  242 QFD-------FLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPV  304 (412)
T ss_pred             Eec-------cccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCce
Confidence            542       2256899999999 999999999999999999999998866 8889999999999998753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.2e-11  Score=100.85  Aligned_cols=192  Identities=16%  Similarity=0.144  Sum_probs=113.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCC--CCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+++||+.+++...       +....+.+.+.+|+|||+.|+ +.+.+|...||.++  ++...                
T Consensus       221 ~I~~~dl~~g~~~~-------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------  277 (427)
T PRK02889        221 VVYVHDLATGRRRV-------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR----------------  277 (427)
T ss_pred             EEEEEECCCCCEEE-------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE----------------
Confidence            36667776665432       222334567899999999887 56778887777654  22110                


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEE--CCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWD--ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                       .+ ..+........|       +|||+.|+..+. ++...+|.  +.+++... +.....     ......|+|+|+++
T Consensus       278 -~l-t~~~~~~~~~~w-------SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~-----~~~~~~~SpDG~~I  342 (427)
T PRK02889        278 -RL-TQSSGIDTEPFF-------SPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS-----YNTSPRISPDGKLL  342 (427)
T ss_pred             -EC-CCCCCCCcCeEE-------cCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC-----CcCceEECCCCCEE
Confidence             01 111112233344       889998876654 45555654  44444322 222221     23467899999998


Q ss_pred             E-EecCC---eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-c--EEEEecCCCeEEEEE
Q 023672          189 F-AGYNK---SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-T--SAIYREDNMELLYVL  261 (279)
Q Consensus       189 ~-~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~--i~~wd~~~~~~~~~~  261 (279)
                      + ++.++   .|.+||+.++ .. .   .+.   ..  .......|+| ++..|+.++.++ .  +.+.++ ++.....+
T Consensus       343 a~~s~~~g~~~I~v~d~~~g-~~-~---~lt---~~--~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l  410 (427)
T PRK02889        343 AYISRVGGAFKLYVQDLATG-QV-T---ALT---DT--TRDESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGRIKQRL  410 (427)
T ss_pred             EEEEccCCcEEEEEEECCCC-Ce-E---Ecc---CC--CCccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence            8 44332   6999999873 21 1   121   11  1235679999 777666665433 3  555566 56666677


Q ss_pred             eecCCCEEEEEEccC
Q 023672          262 HGQEGGVTHVSKLSS  276 (279)
Q Consensus       262 ~~~~~~v~~~~~spd  276 (279)
                      ..+.+.+...+|+|-
T Consensus       411 ~~~~g~~~~p~wsp~  425 (427)
T PRK02889        411 SVQGGDVREPSWGPF  425 (427)
T ss_pred             ecCCCCCCCCccCCC
Confidence            767778888999984

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.7e-12  Score=102.42  Aligned_cols=208  Identities=14%  Similarity=0.154  Sum_probs=127.6

Q ss_pred             cccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccC
Q 023672           28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK  105 (279)
Q Consensus        28 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~  105 (279)
                      ..++...++.+||.-..++++.     .-.||...|.++.|-|  +.+.+++|+.|..|+++|+...+........    
T Consensus        66 ~SGSDD~r~ivWd~~~~Kllhs-----I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~----  136 (758)
T KOG1310|consen   66 ASGSDDTRLIVWDPFEYKLLHS-----ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM----  136 (758)
T ss_pred             eecCCcceEEeecchhcceeee-----eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc----
Confidence            3455566889999998888875     6779999999999999  5568899999999999999853221100000    


Q ss_pred             CCCcccceeeecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeE-EEeccCc----cccccceeeE
Q 023672          106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRC-TYRAYDA----VDEITAAFSV  179 (279)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~-~~~~~~~----~~~~~~v~~~  179 (279)
                         ........-|...|..++-       .|++ +.+.+++.||+|+-+|++....-. ....+..    ........++
T Consensus       137 ---~~~~~~~~cht~rVKria~-------~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l  206 (758)
T KOG1310|consen  137 ---EETTRCWSCHTDRVKRIAT-------APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL  206 (758)
T ss_pred             ---cchhhhhhhhhhhhhheec-------CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence               0001122233445555543       4555 689999999999999998642111 1000000    0001156789


Q ss_pred             EECCCC-CEEEEe-cCCeEEEEEccCCCCcee--------------eeeecccccCCC--------CCc---eEEEEEcc
Q 023672          180 AFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFE--------------KYSTLKGNKEGQ--------AGI---MSAIAFSP  232 (279)
Q Consensus       180 ~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~--------------~~~~~~~~~~~~--------~~~---v~~~~~sp  232 (279)
                      .++|.. .+|++| .|...++||.+...+++.              +...+.   .+|        ...   ++-+.|+|
T Consensus       207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~---p~hlkn~~gn~~~~~~~~t~vtfnp  283 (758)
T KOG1310|consen  207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS---PGHLKNSQGNLDRYITCCTYVTFNP  283 (758)
T ss_pred             eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec---CccccCcccccccceeeeEEEEECC
Confidence            999986 455566 999999999653211110              111111   111        112   45678999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCeEE
Q 023672          233 THTGMLAIGSYSQTSAIYREDNMELL  258 (279)
Q Consensus       233 ~~~~~l~~~~~dg~i~~wd~~~~~~~  258 (279)
                       +|.-|+..-..-.|+++|+..++..
T Consensus       284 -NGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  284 -NGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             -CCcEEEEeeCCeEEEEEeecCCCCc
Confidence             6655554444456999999877643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3e-11  Score=98.92  Aligned_cols=181  Identities=14%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeC-CC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSE-DK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +..+...+.+..|+|||+.|+..+. ++  .|.+||+.+++...                 +.. ........       
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-----------------lt~-~~g~~~~~-------  267 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-----------------VTS-FPGINGAP-------  267 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-----------------ecC-CCCCcCCe-------
Confidence            3345667889999999999886654 33  58888887653211                 000 01111223       


Q ss_pred             ccCCCCcEEEE-ecCCCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCC
Q 023672          133 ASDPTSCVFAS-TTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPG  205 (279)
Q Consensus       133 ~~~~~~~~l~s-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~  205 (279)
                      +++|+|+.|+. .+.++.  |.++|+.+++... +..+..     .....+|+|+|+.++ ++ .++  .|+++|+.++ 
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~-----~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-  340 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA-----IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-  340 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCCC-
Confidence            44889987765 455664  7888988776533 222222     345789999999887 44 444  4666666652 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      . ...+ +.    .+.  .....+|+| ++.+|+..+. ++  .|.++|+.+++.. .+... .......|+|||++
T Consensus       341 ~-~~~L-t~----~g~--~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~  406 (448)
T PRK04792        341 K-VSRL-TF----EGE--QNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM  406 (448)
T ss_pred             C-EEEE-ec----CCC--CCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE
Confidence            2 2221 11    121  234568999 6766665544 44  3566788777643 33322 12234579999873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.45  E-value=1.5e-11  Score=91.36  Aligned_cols=93  Identities=11%  Similarity=0.088  Sum_probs=64.9

Q ss_pred             ceeeEEECCCCCEEEEecC---CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          175 AAFSVAFNPTGTKIFAGYN---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      .+--++|++|+.++++-.|   +.+.+||++.-    +. ..+    -....+|....|+| +...|+.+.....+++|.
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l-~av----LiQk~piraf~WdP-~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KL-HAV----LIQKHPIRAFEWDP-GRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhh----hh-hhh----hhhccceeEEEeCC-CCceEEEEcCCceEEEEc
Confidence            5667999999999986544   67999999872    11 111    12345799999999 777777777677799998


Q ss_pred             cCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          252 EDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ......+. .+...-.|..+.|+-+|.
T Consensus       390 psg~~~V~-vP~~GF~i~~l~W~~~g~  415 (447)
T KOG4497|consen  390 PSGPRVVG-VPKKGFNIQKLQWLQPGE  415 (447)
T ss_pred             CCCceEEe-cCCCCceeeeEEecCCCc
Confidence            75544332 333345788888887764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=9.7e-11  Score=92.92  Aligned_cols=203  Identities=16%  Similarity=0.176  Sum_probs=120.2

Q ss_pred             ceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .-..++++|++++|+++.. +|+|.++++..............          .......+.....-+|+++.++|++++
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~----------~~g~g~~~~rq~~~h~H~v~~~pdg~~  157 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR----------HEGSGPNPDRQEGPHPHQVVFSPDGRF  157 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE----------SEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc----------cCCCCCcccccccccceeEEECCCCCE
Confidence            4567899999999998875 89999999986422111100000          000000000011123344566899998


Q ss_pred             EEEecC-CCcEEEEECCCCe--ee--EEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672          141 FASTTR-DHPIHLWDATTGL--LR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       141 l~s~~~-d~~i~i~d~~~~~--~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +++... ...|.+|++....  ..  ..+.....    .....+.|+|++++++ +. .++.|.++++......+.....
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G----~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~  233 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG----SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT  233 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccC----CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence            877643 4479999997654  32  22222221    2678999999999988 55 7899999999843333443333


Q ss_pred             cccccCCC--CCceEEEEEccCCCcEEEEE-eCCCcEEEEecC--CCe--EEEEEeecCCCEEEEEEccCCCC
Q 023672          214 LKGNKEGQ--AGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED--NME--LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       214 ~~~~~~~~--~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~--~~~--~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +.....+.  ......++++| ++++|+++ ..++.|.+|++.  ++.  .+..+.......+.++++|||++
T Consensus       234 ~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~  305 (345)
T PF10282_consen  234 ISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY  305 (345)
T ss_dssp             EESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred             eeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence            32111111  22678999999 77766655 456789999993  343  34455544456899999999985

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=6e-12  Score=99.76  Aligned_cols=187  Identities=11%  Similarity=0.128  Sum_probs=129.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .++.+++..++.+..+      ..-.+.++++..++...+|++|+.||.|..||.+.............      .....
T Consensus       156 evYRlNLEqGrfL~P~------~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~------v~s~p  223 (703)
T KOG2321|consen  156 EVYRLNLEQGRFLNPF------ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS------VNSHP  223 (703)
T ss_pred             ceEEEEcccccccccc------ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc------cCCCc
Confidence            4667777777776532      22347899999999989999999999999999986544322111110      00001


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC--CCEEEEec
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAGY  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~  192 (279)
                      .......|+++.|       +.+|-.+++|..+|.|.|||+++.+++..-.....    .+|..+.|.+.  +..+++..
T Consensus       224 g~~~~~svTal~F-------~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e----~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  224 GGDAAPSVTALKF-------RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE----LPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             cccccCcceEEEe-------cCCceeEEeeccCCcEEEEEcccCCceeecccCCc----cceeeecccccCCCceEEecc
Confidence            1111224666665       66788999999999999999999887655432221    27889999876  45566668


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      ...++|||-.++ ++..   .+     .....+..+|+-| ++.+++++-+++.+..|=+..
T Consensus       293 k~~~kiWd~~~G-k~~a---si-----Ept~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  293 KRILKIWDECTG-KPMA---SI-----EPTSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hHHhhhcccccC-Ccee---ec-----cccCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence            889999999984 3332   22     2234588999999 888999999888877665543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.4e-12  Score=101.27  Aligned_cols=195  Identities=15%  Similarity=0.256  Sum_probs=138.0

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ....+.+|.+.|+.|.|+..|..|++|+.|..|.+||+..+...                .....+|...|..-.|-|. 
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------l~f~SGH~~NvfQaKFiP~-  196 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------LSFESGHCNNVFQAKFIPF-  196 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------cccccccccchhhhhccCC-
Confidence            34478899999999999999999999999999999999865331                1234456667777777663 


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCC-CeeeEE--EeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATT-GLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~  206 (279)
                          .+.+.+++++.||.+++=.+.. +.+..+  +..|..     +|..++.-|+..+-+  +|.|+.+.-+|++. +.
T Consensus       197 ----s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-----~vhklav~p~sp~~f~S~geD~~v~~~Dlr~-~~  266 (559)
T KOG1334|consen  197 ----SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-----PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ-DV  266 (559)
T ss_pred             ----CCCcCceeccccCceeeeeeccccceecceecccccC-----ccceeeecCCCCCcccccccccceeeeeecc-CC
Confidence                2456789999999999876643 333322  223333     788899999864433  66999999999998 34


Q ss_pred             ceeeeeecccccCCCCC---ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe------EEEEEeec------CCCEEEE
Q 023672          207 DFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLHGQ------EGGVTHV  271 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~~~------~~~v~~~  271 (279)
                      +...+..-    ..+..   ....++..|-+...+++|+.|..+++||.+.-.      .+.++..|      .-.|+++
T Consensus       267 pa~~~~cr----~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl  342 (559)
T KOG1334|consen  267 PAEKFVCR----EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL  342 (559)
T ss_pred             ccceeeee----ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence            33333221    23333   577899999666799999999999999987532      22333222      2368999


Q ss_pred             EEccCC
Q 023672          272 SKLSSA  277 (279)
Q Consensus       272 ~~spdg  277 (279)
                      +++.+|
T Consensus       343 ~Ysh~~  348 (559)
T KOG1334|consen  343 VYSHDG  348 (559)
T ss_pred             EecCCc
Confidence            999775

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.43  E-value=1.2e-12  Score=97.02  Aligned_cols=137  Identities=19%  Similarity=0.282  Sum_probs=97.3

Q ss_pred             EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE-EEEe
Q 023672           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV-FAST  144 (279)
Q Consensus        66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~s~  144 (279)
                      .+|||+|+++|++++- .+.|-|.++.+..+....                  -..|.-+.|       ..+..+ |...
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c------------------ldki~yieW-------~ads~~ilC~~   67 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC------------------LDKIVYIEW-------KADSCHILCVA   67 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH------------------HHHhhheee-------eccceeeeeee
Confidence            5799999999999876 788888887554322111                  123444555       334444 4555


Q ss_pred             cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCC
Q 023672          145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA  222 (279)
Q Consensus       145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  222 (279)
                      +.++.|.+|++...+-..++.....     ++.+++|+|+|+.++ .+ .+-.|.+|.+.+.     ....+.    -..
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tseF~lriTVWSL~t~-----~~~~~~----~pK  133 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-----KGYLLP----HPK  133 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeecceeEEEEEEeccc-----eeEEec----ccc
Confidence            7788999999998888777776655     788999999998777 55 8999999999973     111221    112


Q ss_pred             CceEEEEEccCCCcEEEEEeC
Q 023672          223 GIMSAIAFSPTHTGMLAIGSY  243 (279)
Q Consensus       223 ~~v~~~~~sp~~~~~l~~~~~  243 (279)
                      ..+..++|+| +|++.+..+.
T Consensus       134 ~~~kg~~f~~-dg~f~ai~sR  153 (447)
T KOG4497|consen  134 TNVKGYAFHP-DGQFCAILSR  153 (447)
T ss_pred             cCceeEEECC-CCceeeeeec
Confidence            3457889999 8988877654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.8e-11  Score=92.97  Aligned_cols=214  Identities=13%  Similarity=0.106  Sum_probs=137.2

Q ss_pred             eeeeEecCCCCcccceeeeee-ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           34 WPLIRFDVPPHRTYHFYNQFR-TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      ..+.+|++...-..+....+. .-..|...|.|++|....++|++|..+++|.+.|+++.+..                 
T Consensus        78 ~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi-----------------  140 (609)
T KOG4227|consen   78 MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI-----------------  140 (609)
T ss_pred             ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee-----------------
Confidence            366777764322222111111 23357789999999999999999999999999999976432                 


Q ss_pred             eeeecC---CCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCE-
Q 023672          113 SLVVTE---GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTK-  187 (279)
Q Consensus       113 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  187 (279)
                       ....+   .+.|+.+.-       +|..+.|++.+.++.|.+||.+... ....+-....   ....+.+.|+|.... 
T Consensus       141 -~V~~~~~~~~~VY~m~~-------~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~---~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  141 -YVANENNNRGDVYHMDQ-------HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS---GKNFYTAEFHPETPAL  209 (609)
T ss_pred             -eeecccCcccceeeccc-------CCCCceEEEEecCceEEEEeccCCCCCCceeeecCC---CccceeeeecCCCcee
Confidence             11222   236777754       6677899999999999999998765 2222211111   116788999998754 


Q ss_pred             EEEe-cCCeEEEEEccCCCCceeee-------------------------eeccc---------------cc-CCCC---
Q 023672          188 IFAG-YNKSVRVFDVHRPGRDFEKY-------------------------STLKG---------------NK-EGQA---  222 (279)
Q Consensus       188 l~~~-~d~~i~~~d~~~~~~~~~~~-------------------------~~~~~---------------~~-~~~~---  222 (279)
                      |++. ..+.+-+||.+.+.+++-..                         ..+..               .+ ..|.   
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            4454 77889999998742221000                         00000               00 0111   


Q ss_pred             ----CceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----------------------eEEEEEeecCCCEEEEEEcc
Q 023672          223 ----GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------------------ELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       223 ----~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----------------------~~~~~~~~~~~~v~~~~~sp  275 (279)
                          ..+.+++|-. + .-+++|+.+-.|++|.+...                       +.+..+++|..-+..+.|+|
T Consensus       290 Y~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~  367 (609)
T KOG4227|consen  290 YCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ  367 (609)
T ss_pred             ceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence                1244566654 3 34899999999999987421                       13567899999999999998


Q ss_pred             CC
Q 023672          276 SA  277 (279)
Q Consensus       276 dg  277 (279)
                      ..
T Consensus       368 H~  369 (609)
T KOG4227|consen  368 HN  369 (609)
T ss_pred             Cc
Confidence            64

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.42  E-value=2.5e-10  Score=90.73  Aligned_cols=172  Identities=13%  Similarity=0.064  Sum_probs=109.4

Q ss_pred             EEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEEC
Q 023672           76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDA  155 (279)
Q Consensus        76 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~  155 (279)
                      ++-..++.|.|.|..+.+....                  ...+..+...      +.++||++++++++.|+.|.++|+
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~------------------i~~~~~~h~~------~~~s~Dgr~~yv~~rdg~vsviD~   65 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVAR------------------IPTGGAPHAG------LKFSPDGRYLYVANRDGTVSVIDL   65 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEE------------------EE-STTEEEE------EE-TT-SSEEEEEETTSEEEEEET
T ss_pred             EEecCCCEEEEEECCCCeEEEE------------------EcCCCCceeE------EEecCCCCEEEEEcCCCeEEEEEC
Confidence            4556689999999987543221                  1112222211      245899999999999999999999


Q ss_pred             CCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC
Q 023672          156 TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT  233 (279)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  233 (279)
                      .+++.+..++...      ...+++++++|++++++  ..+.+.++|.++ .++.+.+.............+.++..+| 
T Consensus        66 ~~~~~v~~i~~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~-  137 (369)
T PF02239_consen   66 ATGKVVATIKVGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASP-  137 (369)
T ss_dssp             TSSSEEEEEE-SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-S-
T ss_pred             CcccEEEEEecCC------CcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecC-
Confidence            9999999988766      56789999999999954  789999999988 3434333222111112345678888888 


Q ss_pred             CCc-EEEEEeCCCcEEEEecCCCeEEE-EEeecCCCEEEEEEccCCCC
Q 023672          234 HTG-MLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       234 ~~~-~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~spdg~~  279 (279)
                      ... ++++--+.+.|.+-|....+.+. ..........+..|+|+|||
T Consensus       138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred             CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence            555 66666666888888877655432 23334456789999999986

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.41  E-value=4.6e-11  Score=87.33  Aligned_cols=207  Identities=15%  Similarity=0.219  Sum_probs=134.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc---CCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP---DGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+..|++...+.... ..  ....-+..++.|.|..   +|. .++-+..+|.|.+|...............        
T Consensus        47 kl~Lys~~d~~~~~l-~~--~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls--------  115 (339)
T KOG0280|consen   47 KLHLYSLEDMKLSPL-DT--LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS--------  115 (339)
T ss_pred             ceEEEeecccccCcc-ce--eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc--------
Confidence            444555555544431 11  1122345577788864   555 56677788999999876432211111110        


Q ss_pred             cceeeecCCC--ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE--EEeccCccccccceeeEEECCCC-
Q 023672          111 EASLVVTEGE--SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTG-  185 (279)
Q Consensus       111 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-  185 (279)
                           ...-.  ...++       .+++.+..++++..+|.+.+-+........  ..+.|.-     .++-..|+... 
T Consensus       116 -----~~ki~~~~~lsl-------D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----E~Wta~f~~~~p  178 (339)
T KOG0280|consen  116 -----SKKISVVEALSL-------DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----EAWTAKFSDKEP  178 (339)
T ss_pred             -----hhhhhheeeeEE-------EeeccCceEEEEcCCCcEEEEecceeeeeecccccccce-----eeeeeecccCCC
Confidence                 00001  12233       346677789999999999866655554433  6666665     77888888765 


Q ss_pred             CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEee
Q 023672          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHG  263 (279)
Q Consensus       186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~  263 (279)
                      +++++| .|+.+..||+|.++.   .   +......|...|.++.-+|..+.++++|+.|-.|++||.|+ ++++..-. 
T Consensus       179 nlvytGgDD~~l~~~D~R~p~~---~---i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-  251 (339)
T KOG0280|consen  179 NLVYTGGDDGSLSCWDIRIPKT---F---IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-  251 (339)
T ss_pred             ceEEecCCCceEEEEEecCCcc---e---eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence            455576 999999999995431   1   12222578889999999987788999999999999999994 66765544 


Q ss_pred             cCCCEEEEEEccC
Q 023672          264 QEGGVTHVSKLSS  276 (279)
Q Consensus       264 ~~~~v~~~~~spd  276 (279)
                      -.++|+.+.++|.
T Consensus       252 v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  252 VGGGVWRIKHHPE  264 (339)
T ss_pred             cccceEEEEecch
Confidence            3478999999884

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.1e-10  Score=95.66  Aligned_cols=139  Identities=14%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             cCCCceEEEEeeCcccccCCCCcEEEEecC---CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-
Q 023672          117 TEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-  191 (279)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-  191 (279)
                      .+...+....|       +|||+.|+..+.   +..|.+||+.+++... +.....     .+....|+|+|+.|+ +. 
T Consensus       199 ~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g-----~~~~~~~SPDG~~la~~~~  265 (435)
T PRK05137        199 DGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPG-----MTFAPRFSPDGRKVVMSLS  265 (435)
T ss_pred             cCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCC-----cccCcEECCCCCEEEEEEe
Confidence            34456777777       788998887753   4689999999886543 222222     556889999998876 43 


Q ss_pred             cCC--eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCC
Q 023672          192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEG  266 (279)
Q Consensus       192 ~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~  266 (279)
                      .++  .|++||+.++ . .   ..+    ..+........|+| ++..|+..+. +|  .|+++|+.+++. ..+..+.+
T Consensus       266 ~~g~~~Iy~~d~~~~-~-~---~~L----t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~  334 (435)
T PRK05137        266 QGGNTDIYTMDLRSG-T-T---TRL----TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG  334 (435)
T ss_pred             cCCCceEEEEECCCC-c-e---EEc----cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence            444  4777788763 1 1   122    23344566789999 7777766553 33  588888876654 34443455


Q ss_pred             CEEEEEEccCCCC
Q 023672          267 GVTHVSKLSSAYT  279 (279)
Q Consensus       267 ~v~~~~~spdg~~  279 (279)
                      .+....|||||++
T Consensus       335 ~~~~~~~SpdG~~  347 (435)
T PRK05137        335 RYSTPVWSPRGDL  347 (435)
T ss_pred             cccCeEECCCCCE
Confidence            6777899999974

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=1e-09  Score=87.23  Aligned_cols=189  Identities=14%  Similarity=0.151  Sum_probs=116.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+.|..+.+.+.      .+......-..+.|+|||+++++++.||.|.++|+.+.+....                 
T Consensus        17 ~v~viD~~t~~~~~------~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-----------------   73 (369)
T PF02239_consen   17 SVAVIDGATNKVVA------RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-----------------   73 (369)
T ss_dssp             EEEEEETTT-SEEE------EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-----------------
T ss_pred             EEEEEECCCCeEEE------EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-----------------
Confidence            46677888877665      3332223334578999999999999999999999997654221                 


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCCCeeeEEEeccCccc--cccceeeEEECCCCCEEE-E
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIF-A  190 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~  190 (279)
                       ..-+....       .++++++|++++++. .++.+.++|.++.+.++.+.......  ....+..+..+|....++ +
T Consensus        74 -i~~G~~~~-------~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~  145 (369)
T PF02239_consen   74 -IKVGGNPR-------GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN  145 (369)
T ss_dssp             -EE-SSEEE-------EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred             -EecCCCcc-------eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence             12222333       345689999988775 68899999999999988887543211  222566788888887555 4


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecCCCeEEEEEe
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      - ..+.|.+.|.... .+... ..+     ..........|+| +++++ ++...++.|-++|..+++.+..+.
T Consensus       146 lkd~~~I~vVdy~d~-~~~~~-~~i-----~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDP-KNLKV-TTI-----KVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             ETTTTEEEEEETTTS-SCEEE-EEE-----E--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EccCCeEEEEEeccc-cccce-eee-----cccccccccccCc-ccceeeecccccceeEEEeeccceEEEEee
Confidence            4 5588988898764 22211 122     1233567889999 66655 445667789999999988776553

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=4.2e-10  Score=91.57  Aligned_cols=181  Identities=14%  Similarity=0.082  Sum_probs=102.7

Q ss_pred             CCceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.....+|+|||+.|+..+.     |..+.+|++..+....              ...+...........       ++
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~--------------~~~lt~~~~~~~~~p-------~w  288 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK--------------PRRLLNEAFGTQGNP-------SF  288 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc--------------ceEeecCCCCCcCCe-------EE
Confidence            344567899999998886543     2234446665421000              000111111112233       44


Q ss_pred             CCCCcEEEEec-CCCcEEEE--ECCC-CeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC--CeEEEEEccCCCC
Q 023672          135 DPTSCVFASTT-RDHPIHLW--DATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN--KSVRVFDVHRPGR  206 (279)
Q Consensus       135 ~~~~~~l~s~~-~d~~i~i~--d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d--~~i~~~d~~~~~~  206 (279)
                      +|||+.|+..+ .++...+|  ++.. +.....+.....     .+....|+|||+.|+ ++ .+  ..|.+||+.++ .
T Consensus       289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-----~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~  362 (428)
T PRK01029        289 SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-----NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-R  362 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----CccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-C
Confidence            88999877665 45654555  4432 222333332222     456789999999887 44 32  47999999873 2


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEE-EeC--CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSY--SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~-~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      . .   .+    ......+....|+| ++..|+. +..  ...|+++|+.+++..... ...+.+...+|+|-.
T Consensus       363 ~-~---~L----t~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        363 D-Y---QL----TTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             e-E---Ec----cCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence            1 1   12    11123456789999 7766654 433  345888999877654333 345567889999854

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=2.7e-10  Score=84.26  Aligned_cols=175  Identities=19%  Similarity=0.265  Sum_probs=115.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCc-cccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||-...+++.       ...-...|.++.+.++  +|++.- .+.|.||...+.- ....                
T Consensus        76 kviIWDD~k~~~i~-------el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~----------------  129 (346)
T KOG2111|consen   76 KVIIWDDLKERCII-------ELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHV----------------  129 (346)
T ss_pred             eEEEEecccCcEEE-------EEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheee----------------
Confidence            57889855555443       2224567999999865  465555 5689999987431 1110                


Q ss_pred             eee-cCCCceEEEEeeCcccccCCCCcEEEE-ecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECCCCCEEE
Q 023672          114 LVV-TEGESVYDFCWFPHMSASDPTSCVFAS-TTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       114 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                      +.. .....+.++  .|     ..+..+||. |-.-|.|.|-|+...+.  ...+..|..     .|.|++++-+|..+|
T Consensus       130 ~et~~NPkGlC~~--~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vA  197 (346)
T KOG2111|consen  130 IETRSNPKGLCSL--CP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVA  197 (346)
T ss_pred             eecccCCCceEee--cC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEE
Confidence            111 111112222  11     112233443 34568999999987654  366677776     899999999999999


Q ss_pred             Ee-cCC-eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          190 AG-YNK-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       190 ~~-~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      ++ ..| -|||||..++ ..+..   +..  ......|.+++||| +..+|+++|+.|+++|+.++.
T Consensus       198 TaStkGTLIRIFdt~~g-~~l~E---~RR--G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  198 TASTKGTLIRIFDTEDG-TLLQE---LRR--GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EeccCcEEEEEEEcCCC-cEeee---eec--CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence            54 555 5899999995 33333   222  23345799999999 999999999999999998865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=2.6e-09  Score=83.27  Aligned_cols=217  Identities=11%  Similarity=0.096  Sum_probs=126.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC----------CCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .+.+.|..+.+.+...     ..|....  .+ ++||++.|+++..          +..|.+||..+.+...+...    
T Consensus        28 ~v~ViD~~~~~v~g~i-----~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~----   95 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMT-----DGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL----   95 (352)
T ss_pred             eEEEEECCCCEEEEEE-----EccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc----
Confidence            4566677766655421     1222222  24 9999998876554          78999999998765433211    


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-C-CCcEEEEECCCCeeeEEEeccCccc-----------
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-R-DHPIHLWDATTGLLRCTYRAYDAVD-----------  171 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~-----------  171 (279)
                                  .. .+-..+.-.|...+++|+|++++... . +..|.+.|+.+++.+..+.......           
T Consensus        96 ------------p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~  162 (352)
T TIGR02658        96 ------------PE-GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM  162 (352)
T ss_pred             ------------CC-CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE
Confidence                        10 00001111233346688998888765 3 6788899998887766554332110           


Q ss_pred             -----c-c---------cceeeE--------------EECC-CCCEEEEecCCeEEEEEccCCCCce-eeeeecccc---
Q 023672          172 -----E-I---------TAAFSV--------------AFNP-TGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKGN---  217 (279)
Q Consensus       172 -----~-~---------~~v~~~--------------~~~~-~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~---  217 (279)
                           . .         ......              .|.+ +|++++.+..|.|.+.|+....... ..+..+...   
T Consensus       163 ~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~  242 (352)
T TIGR02658       163 HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA  242 (352)
T ss_pred             EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc
Confidence                 0 0         001111              2233 7888887766999999975422111 111111100   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEE-Ee---------CCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAI-GS---------YSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~-~~---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      -.-..+.+.-++++| ++..++. ..         ..+.|.++|..+++.+..+.. ...+.+++++|||+
T Consensus       243 ~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgk  311 (352)
T TIGR02658       243 DGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAK  311 (352)
T ss_pred             cccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCC
Confidence            011233444599999 5555554 31         224799999999999988884 45789999999998

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.36  E-value=3.3e-12  Score=98.70  Aligned_cols=174  Identities=14%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ..|..+.|-|..=+|++++..|.++--|+.+|+.....                ... .+.+..+       ..+|-+..
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~----------------~t~-~G~~~vm-------~qNP~NaV  265 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI----------------RTG-AGRTDVM-------KQNPYNAV  265 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHH----------------Hcc-CCccchh-------hcCCccce
Confidence            34666667776666667777777777777766543221                111 1233333       33667778


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeecccccC
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      +-.|...|+|.+|.....+++..+..|..     +|.++++.++|++++ +|.|..++|||++.-    ..+.+..   .
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~----~ql~t~~---t  333 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNF----YQLHTYR---T  333 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeeccc----cccceee---c
Confidence            99999999999999999999988888887     999999999999999 569999999999973    2222221   1


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEe-cCCCe----EEEEEeecCCCEEEEEEcc
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME----LLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd-~~~~~----~~~~~~~~~~~v~~~~~sp  275 (279)
                        ..+...+++|. .|  +++.+....+.||. .-.+.    ..+--....++|.++.|.|
T Consensus       334 --p~~a~~ls~Sq-kg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  334 --PHPASNLSLSQ-KG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             --CCCcccccccc-cc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence              23566788887 44  33444556799994 22211    1111111234677777776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=5.4e-10  Score=91.71  Aligned_cols=174  Identities=14%  Similarity=0.122  Sum_probs=102.6

Q ss_pred             CCceEEEEEccCCCeEE-EeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           60 NNFLKGIKWSPDGSSFL-TSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      .+.+...+|+|||+.|+ +.+.+|  .|.+||+.++....                 + ..+........       |+|
T Consensus       242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-----------------l-t~~~~~~~~~~-------~sp  296 (430)
T PRK00178        242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-----------------V-TNHPAIDTEPF-------WGK  296 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-----------------c-ccCCCCcCCeE-------ECC
Confidence            34456789999999887 445555  57788887654311                 0 01111222233       478


Q ss_pred             CCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCCCcee
Q 023672          137 TSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFE  209 (279)
Q Consensus       137 ~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~~~~~  209 (279)
                      +++.|+..+. ++  .|.++|+.+++..... ....     ......|+|+|+.++ +. .++  .|.++|+.++ . ..
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-----~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~-~~  368 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-----YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-S-VR  368 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-----CccceEECCCCCEEEEEEccCCceEEEEEECCCC-C-EE
Confidence            8887766553 33  5777888877643322 1111     234578999999988 44 333  5888898763 1 11


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .   +..   .  .......|+| +|..++..+. ++  .|.++++. +.....+..+.+.+...+|+|-
T Consensus       369 ~---lt~---~--~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        369 I---LTD---T--SLDESPSVAP-NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             E---ccC---C--CCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            1   211   1  1122458999 7776665554 33  46677764 4444556656667888889873

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=5.6e-09  Score=78.89  Aligned_cols=199  Identities=17%  Similarity=0.184  Sum_probs=125.8

Q ss_pred             EEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC--ceEEEEeeCcccccCCCCcE
Q 023672           64 KGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE--SVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~  140 (279)
                      +-+++++++++|+++.. -|.|.++-+.+..........             ..+.+.  ....-.-++++..+.|++++
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-------------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-------------VKHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee-------------eecCCCCCCccccCCccceeeeCCCCCE
Confidence            77999999999998876 588999999763322111000             000000  01111222344567999999


Q ss_pred             EEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeec---
Q 023672          141 FASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL---  214 (279)
Q Consensus       141 l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~---  214 (279)
                      |++.+. -..|.+|++..|+....-...-  ........|.|+|++++.+ +. .+++|-+|........++.++.+   
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             EEEeecCCceEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            988854 2368999999876543322211  1112678999999999988 56 89999999998754555554443   


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecCC--CeE--EEEEeecCCCEEEEEEccCCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDN--MEL--LYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~~--~~~--~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ...+.+ ......+..+| +|++|.++.. ...|.+|.+..  +++  +.....+....++..|+|+|++
T Consensus       237 P~dF~g-~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         237 PEDFTG-TNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             ccccCC-CCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence            333333 34567889999 8988887743 33578887753  332  2222233345788999998874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.32  E-value=9.6e-12  Score=102.73  Aligned_cols=207  Identities=17%  Similarity=0.258  Sum_probs=131.4

Q ss_pred             HHhcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccccc
Q 023672           25 AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        25 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      ...+.+++..-+++|.++.+.++.      .+.||+++|++++|+|-.    +.+.||++++||.+=.......  -...
T Consensus       245 ~~iaaaS~D~vIrvWrl~~~~pvs------vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p--rp~~  312 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPDGAPVS------VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP--RPLK  312 (1113)
T ss_pred             hhhhhcccCceEEEEecCCCchHH------HHhccccceeeeccCccc----cCCCCCceEeccccccccccCC--CCCC
Confidence            344556666678999999999987      799999999999999954    7888999999998711110000  0000


Q ss_pred             CCCCcccceeeec---------------CCCceEEEEeeCccccc---CCC-CcEEEEecCCCcEEEEECCCCeeeEEEe
Q 023672          105 KDQDSYEASLVVT---------------EGESVYDFCWFPHMSAS---DPT-SCVFASTTRDHPIHLWDATTGLLRCTYR  165 (279)
Q Consensus       105 ~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~---~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~~~  165 (279)
                      ...+..+..+.+.               .......+.|.-..+-|   +.+ ..+.+++-.+..+.+|++.+|.....+.
T Consensus       313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~  392 (1113)
T KOG0644|consen  313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM  392 (1113)
T ss_pred             cccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc
Confidence            0000000000000               00011111111110000   101 1244444556678899999998888888


Q ss_pred             ccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC
Q 023672          166 AYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (279)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~  243 (279)
                      .+..     .++.+.++|-+..++  +|.||...|||+-. +.+.+...      .+| +.+...+||+ +|+.++....
T Consensus       393 ghsd-----~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~------~gh-~kl~d~kFSq-dgts~~lsd~  458 (1113)
T KOG0644|consen  393 GHSD-----EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYF------IGH-GKLVDGKFSQ-DGTSIALSDD  458 (1113)
T ss_pred             cccc-----ceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeee------ccc-ceeeccccCC-CCceEecCCC
Confidence            7776     889999999887777  56999999999987 34433332      243 4566789999 8888888888


Q ss_pred             CCcEEEEecCCCeE
Q 023672          244 SQTSAIYREDNMEL  257 (279)
Q Consensus       244 dg~i~~wd~~~~~~  257 (279)
                      -|.++|.....++.
T Consensus       459 hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  459 HGQLYILGTGQSKS  472 (1113)
T ss_pred             CCceEEeccCCCcc
Confidence            88888887655543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.31  E-value=5e-11  Score=90.61  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=103.7

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      +..+..++.+++||++..+....++++.......            +.         ..+.++.-.|..+.+-.+...+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~------------kl---------~~~~~v~~~~~ai~~~~~~~sv~  123 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGA------------KL---------LDVSCVPKRPTAISFIREDTSVL  123 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcc------------ee---------eeEeecccCcceeeeeeccceEE
Confidence            4455677888888888888777777776432100            00         01122222222222222333333


Q ss_pred             Ee---cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672          143 ST---TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       143 s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      .+   +....+.+|....+.+...      .++...++.++|+||+++|+++ .|..|++-.....       ..+..-.
T Consensus       124 v~dkagD~~~~di~s~~~~~~~~~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-------f~Iesfc  190 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCEPI------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-------FVIESFC  190 (390)
T ss_pred             EEeecCCceeeeeecccccCcchh------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-------cchhhhc
Confidence            33   3334455555544333222      2333489999999999999977 9999999877542       1222222


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      -||...|..++.-+ + +.|++|+.|++|++||+++|+++.++.
T Consensus       191 lGH~eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  191 LGHKEFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cccHhheeeeeecc-C-ceeeecCCCCcEEEEecccCCcccccc
Confidence            58999999999987 4 568999999999999999999886664

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=7.8e-10  Score=90.70  Aligned_cols=171  Identities=13%  Similarity=0.189  Sum_probs=100.4

Q ss_pred             ceEEEEEccCCCeEEE-eeCCCe--EEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           62 FLKGIKWSPDGSSFLT-SSEDKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .....+|+|||+.|+. .+.+|.  |.++|+.++....                 +. .+........|       +|++
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-----------------lt-~~~~~~~~p~w-------SpDG  317 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-----------------IT-RHRAIDTEPSW-------HPDG  317 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-----------------Cc-cCCCCccceEE-------CCCC
Confidence            3457899999998864 566675  6667776543211                 11 11112233344       7888


Q ss_pred             cEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCCCceeee
Q 023672          139 CVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       139 ~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~~~~~~~  211 (279)
                      +.|+..+. ++  .|.++|+.+++.... .....     .....+|+|+|+.++ ++ .++  .|.++|+.++ . ... 
T Consensus       318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~-----~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~-  388 (448)
T PRK04792        318 KSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE-----QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQV-  388 (448)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC-----CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEE-
Confidence            88776553 33  477778877765432 22221     223578999999887 44 444  4555677653 1 121 


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEe-CCCc--EEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQT--SAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                        +.   ..  .......|+| ++..|+..+ .++.  +++++. ++.....+..+.+.+...+|+|
T Consensus       389 --lt---~~--~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        389 --LT---ST--RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --cc---CC--CCCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence              11   11  1112447999 666655544 4443  677776 5666677776667788899998

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=1.6e-11  Score=90.56  Aligned_cols=214  Identities=12%  Similarity=0.196  Sum_probs=134.6

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-ccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .+.|+++.|...|.+|++|...|.|.+|.-+...- .+..-.. +......+.......-.+.|..+.|.-.     ...
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~-----t~r   99 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD-----TGR   99 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccc-cchhhhhhhcccccchhhhhhccHHHHhhheeeecC-----CCc
Confidence            45699999999999999999999999998765431 0110000 0000111111112222346777777321     123


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeE---------------------------EEeccC-----------ccccccceeeEE
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRC---------------------------TYRAYD-----------AVDEITAAFSVA  180 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~---------------------------~~~~~~-----------~~~~~~~v~~~~  180 (279)
                      ..++..+.|.+|++|.+.......                           .+..|.           ...+..-+.+++
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence            356667789999999986431100                           000000           012333577899


Q ss_pred             ECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE---
Q 023672          181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---  257 (279)
Q Consensus       181 ~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~---  257 (279)
                      |+.|...++++.|-.|.+|++......+..+-.-+..+..-..-|++..|+|.....+...+..|.|++-|+|...+   
T Consensus       180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence            99998888888999999999987666555543333333333456899999997677788888899999999984321   


Q ss_pred             ---EE--EE--------eecCCCEEEEEEccCCCC
Q 023672          258 ---LY--VL--------HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       258 ---~~--~~--------~~~~~~v~~~~~spdg~~  279 (279)
                         +.  .+        .+-...|..+.|+|+|||
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry  294 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY  294 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcE
Confidence               11  11        112247889999999986

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=9.2e-10  Score=90.12  Aligned_cols=190  Identities=17%  Similarity=0.163  Sum_probs=110.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCC--eEEEEeCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+++||+.+++..       .+..+.+.+.+++|+|||+.|+ +.+.++  .|.+||+.++....               
T Consensus       215 ~i~v~d~~~g~~~-------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~---------------  272 (417)
T TIGR02800       215 EIYVQDLATGQRE-------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR---------------  272 (417)
T ss_pred             EEEEEECCCCCEE-------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE---------------
Confidence            4566776665432       2233456677899999999776 444444  58888887653211               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                        + ..+........       ++|+++.|+.++. ++  .|.++|+.+++... +.....     .+....|+|+++++
T Consensus       273 --l-~~~~~~~~~~~-------~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~-----~~~~~~~spdg~~i  336 (417)
T TIGR02800       273 --L-TNGPGIDTEPS-------WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGG-----YNASPSWSPDGDLI  336 (417)
T ss_pred             --C-CCCCCCCCCEE-------ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC-----CccCeEECCCCCEE
Confidence              0 01111122233       4778888776654 33  57888888766433 332222     45678999999988


Q ss_pred             EE-ecCC---eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEE
Q 023672          189 FA-GYNK---SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVL  261 (279)
Q Consensus       189 ~~-~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~  261 (279)
                      +. ..++   .|.+||+.++ . ..   .+.    . ........|+| ++..|+..+.++   .+++.+. ++.....+
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~-~-~~---~l~----~-~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~  404 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGG-G-ER---VLT----D-TGLDESPSFAP-NGRMILYATTRGGRGVLGLVST-DGRFRARL  404 (417)
T ss_pred             EEEEccCCceEEEEEeCCCC-C-eE---Ecc----C-CCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence            84 4443   7888888762 1 11   111    1 11234568999 777666665543   3555553 45555566


Q ss_pred             eecCCCEEEEEEc
Q 023672          262 HGQEGGVTHVSKL  274 (279)
Q Consensus       262 ~~~~~~v~~~~~s  274 (279)
                      ..+.+.+..++|+
T Consensus       405 ~~~~g~~~~~~ws  417 (417)
T TIGR02800       405 PLGNGDVREPAWS  417 (417)
T ss_pred             CCCCCCcCCCCCC
Confidence            5555566666664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.27  E-value=1.9e-09  Score=84.21  Aligned_cols=169  Identities=12%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             Ecc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC
Q 023672           68 WSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR  146 (279)
Q Consensus        68 ~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  146 (279)
                      |++ +|.+++..|+ |...|.+...+..                   +...+...|.-..+       ..++.-++.|..
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-------------------iqv~~~~~VrY~r~-------~~~~e~~vigt~  379 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-------------------IQVGKKGGVRYRRI-------QVDPEGDVIGTN  379 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-------------------EEcCCCCceEEEEE-------ccCCcceEEecc
Confidence            444 7888888886 5666666554322                   44445445544433       345557888888


Q ss_pred             CC-cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCc
Q 023672          147 DH-PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (279)
Q Consensus       147 d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (279)
                      || .+-++|.++++.......-.      .|.++..+|+|++++++ ....+.++|+.++..     ..+.   ....+-
T Consensus       380 dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vididngnv-----~~id---kS~~~l  445 (668)
T COG4946         380 DGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-----RLID---KSEYGL  445 (668)
T ss_pred             CCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-----eEec---ccccce
Confidence            88 89999999988665554433      78899999999999988 678899999998421     1111   233567


Q ss_pred             eEEEEEccCCCcEEEEEeCCC----cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          225 MSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       225 v~~~~~sp~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |+.+.|+| ++.++|-+--+|    .|+++|+.+++...... ..+.=.+-+|.|||+|
T Consensus       446 Itdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry  502 (668)
T COG4946         446 ITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY  502 (668)
T ss_pred             eEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence            99999999 999999887666    59999998887654333 3333356789999986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.27  E-value=9.6e-10  Score=94.76  Aligned_cols=206  Identities=12%  Similarity=0.085  Sum_probs=130.6

Q ss_pred             eeeEecCCCCccc-ceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTY-HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      -+++|+.....-- ...+...+...-...+.++...+.+..+|+++.||.|.+.+++.............         .
T Consensus      1072 tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~r---------i 1142 (1431)
T KOG1240|consen 1072 TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVR---------I 1142 (1431)
T ss_pred             eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeee---------c
Confidence            5677876543322 22333334443567899999999999999999999999999985311111111100         0


Q ss_pred             eeecCCCceEEE-EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          114 LVVTEGESVYDF-CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       114 ~~~~~~~~v~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                      ......+.+.++ ++.     .......++.+..-+.|..||++.......++.....   +.|++++.+|.+.+++.| 
T Consensus      1143 ~n~~~~g~vv~m~a~~-----~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h---G~vTSi~idp~~~WlviGt 1214 (1431)
T KOG1240|consen 1143 PNLKKDGVVVSMHAFT-----AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH---GLVTSIVIDPWCNWLVIGT 1214 (1431)
T ss_pred             ccccCCCceEEeeccc-----ccccceeEEEEEeccceEEecchhhhhHHhhhcCccc---cceeEEEecCCceEEEEec
Confidence            111122223222 221     1111236777888889999999987766665543322   278999999999999988 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC--cEEEEEe--CCCcEEEEecCCCeEEEEEeec
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT--GMLAIGS--YSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ..|.+.+||+|-+ .+.   ....   ..+..++..++.+|.-+  ...++++  ..+.|.+|++.+|.+..++-..
T Consensus      1215 s~G~l~lWDLRF~-~~i---~sw~---~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRFR-VPI---LSWE---HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             CCceEEEEEeecC-cee---eccc---CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence            8999999999963 221   1221   24446777777776433  4555544  4677999999999877776543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=1.3e-11  Score=97.94  Aligned_cols=183  Identities=21%  Similarity=0.251  Sum_probs=123.8

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.||...|..++--.+.+.+++++.|.+|++|.+....-......|.          .....|..+|.++.|       
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----------fTY~aHkk~i~~igf-------  792 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----------FTYQAHKKPIHDIGF-------  792 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----------eEhhhccCcccceee-------
Confidence            678999999998877777889999999999999997543222222222          244567788888877       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      -.+-++++++  |+-|.+||.--++++..+......+....|.++. +-+...+.+|  ...+|+++|-+..+...+. .
T Consensus       793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-k  868 (1034)
T KOG4190|consen  793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCEL-K  868 (1034)
T ss_pred             eeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeE-E
Confidence            3455566654  8899999998887766544333222222333331 1123344433  7789999999974321111 1


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                      .  ....+....+.+++..| .|++++.+-.+|.|.+.|.++|+.+..+
T Consensus       869 V--cna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  869 V--CNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             e--ccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccC
Confidence            1  11134456788999999 9999999999999999999999877644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=1.2e-10  Score=98.41  Aligned_cols=149  Identities=14%  Similarity=0.161  Sum_probs=113.9

Q ss_pred             EEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC
Q 023672           67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR  146 (279)
Q Consensus        67 ~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  146 (279)
                      .++++.-++++|+.-+.|.+|+......                 .....+|.+.+..+.|       +.+|+++++.|.
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~-----------------p~~l~GHeG~iF~i~~-------s~dg~~i~s~Sd  195 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNK-----------------PIRLKGHEGSIFSIVT-------SLDGRYIASVSD  195 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCC-----------------cceecccCCceEEEEE-------ccCCcEEEEEec
Confidence            3466667899999999999999872211                 0134567778888877       779999999999


Q ss_pred             CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCC-Cce
Q 023672          147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIM  225 (279)
Q Consensus       147 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v  225 (279)
                      |.++++|++++++...    ....++...|+.+.|+|+ ..+.+|.|-+.++|+...     ..+..+    .+|. ..+
T Consensus       196 DRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-----~~l~~y----~~h~g~~i  261 (967)
T KOG0974|consen  196 DRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNG-----TQLEVY----DEHSGKGI  261 (967)
T ss_pred             CcceeeeecccccccC----cccccccceeEEEEeccc-eeEEeccceEEEEEeccc-----ceehhh----hhhhhcce
Confidence            9999999999987665    222333348999999998 333467999999997764     222233    4443 468


Q ss_pred             EEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       226 ~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      ..++..+ +..+++|++.|+.+++||+..
T Consensus       262 w~~~~~~-~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  262 WKIAVPI-GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence            8999999 899999999999999999854

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.27  E-value=5.8e-09  Score=82.89  Aligned_cols=193  Identities=16%  Similarity=0.211  Sum_probs=116.7

Q ss_pred             ceEEEEEccCCCeEEEeeC----CCeEEEEeCCCC-ccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           62 FLKGIKWSPDGSSFLTSSE----DKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      .-..++++|++++|+++..    ++.|..|++... ......             ..... .+.       .|..++++|
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~-------------~~~~~-~g~-------~p~~i~~~~   96 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL-------------NSVPS-GGS-------SPCHIAVDP   96 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE-------------EEEEE-SSS-------CEEEEEECT
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe-------------eeecc-CCC-------CcEEEEEec
Confidence            3566889999999988876    578999988753 110000             00110 122       222345689


Q ss_pred             CCcEEEEec-CCCcEEEEECCC-CeeeEEEec--c------CccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCC
Q 023672          137 TSCVFASTT-RDHPIHLWDATT-GLLRCTYRA--Y------DAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRP  204 (279)
Q Consensus       137 ~~~~l~s~~-~d~~i~i~d~~~-~~~~~~~~~--~------~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~  204 (279)
                      ++++|+++. .+|.|.++++.. +........  +      ........+.++.|+|+++++++.  ....|.+|++...
T Consensus        97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~  176 (345)
T PF10282_consen   97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD  176 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred             CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence            999988886 488999999987 443332111  1      001112256789999999998854  6678999999875


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecC--CCe--EEEEEeec------CCCEEEEEE
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYRED--NME--LLYVLHGQ------EGGVTHVSK  273 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~--~~~--~~~~~~~~------~~~v~~~~~  273 (279)
                      ...+.....+.   .........++|+| ++.++ ++.-.++.|.++++.  ++.  .+..+...      ......|++
T Consensus       177 ~~~l~~~~~~~---~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i  252 (345)
T PF10282_consen  177 TGKLTPVDSIK---VPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI  252 (345)
T ss_dssp             S-TEEEEEEEE---CSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred             CceEEEeeccc---cccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence            43333322221   23345688999999 66655 455567889999988  443  33333321      125789999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      +|||+|
T Consensus       253 spdg~~  258 (345)
T PF10282_consen  253 SPDGRF  258 (345)
T ss_dssp             -TTSSE
T ss_pred             ecCCCE
Confidence            999985

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=4.6e-10  Score=94.93  Aligned_cols=180  Identities=14%  Similarity=0.157  Sum_probs=125.4

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      +.|....+..+...++.++.+..+.+||...+..........                ....++..-    .-++++.-+
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------r~~l~~~~~----~g~s~~~~~  147 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------RCTLYSSLI----IGDSAEELY  147 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------eEEEEeEEE----EeccCcEEE
Confidence            445555555666778888888999999998654432211111                001111111    134677789


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccC
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      +++|+.-+.|.+|+....+....+.+|..     .|.++.|+-+|+++++ +.|.++++|++.+.....       ..--
T Consensus       148 i~~gsv~~~iivW~~~~dn~p~~l~GHeG-----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~f  215 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDNKPIRLKGHEG-----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGF  215 (967)
T ss_pred             EEeccccccEEEEeccccCCcceecccCC-----ceEEEEEccCCcEEEEEecCcceeeeecccccccC-------cccc
Confidence            99999999999999873333234556665     8999999999999994 599999999999842211       2225


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC-CEEEEEEccC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVSKLSS  276 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~spd  276 (279)
                      +|+..|..++|.| +  .++++++|.+.++|+. ++..+..+.+|.+ .++.++..++
T Consensus       216 gHsaRvw~~~~~~-n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~  269 (967)
T KOG0974|consen  216 GHSARVWACCFLP-N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIG  269 (967)
T ss_pred             cccceeEEEEecc-c--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCC
Confidence            9999999999999 6  8999999999999965 3444556776654 5666666553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.1e-10  Score=90.96  Aligned_cols=243  Identities=15%  Similarity=0.153  Sum_probs=144.7

Q ss_pred             hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccc-----
Q 023672           27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVN-----   99 (279)
Q Consensus        27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-----   99 (279)
                      ...+.....+.+||.........     ...||...|....|-|  +.+-+++++.||.|++=.+...+......     
T Consensus       157 l~SgSDD~~vv~WdW~~~~~~l~-----f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h  231 (559)
T KOG1334|consen  157 LASGSDDLQVVVWDWVSGSPKLS-----FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH  231 (559)
T ss_pred             eeccCccceEEeehhhccCcccc-----cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc
Confidence            34445566888999888776542     6778999999999988  45679999999999988775443321110     


Q ss_pred             -----cc---------cccCCCCcccceeeecCCCceEEEE---eeCc------ccccCCCC-cEEEEecCCCcEEEEEC
Q 023672          100 -----AC---------SLAKDQDSYEASLVVTEGESVYDFC---WFPH------MSASDPTS-CVFASTTRDHPIHLWDA  155 (279)
Q Consensus       100 -----~~---------~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~------~~~~~~~~-~~l~s~~~d~~i~i~d~  155 (279)
                           ..         ....+.+..+..+......+...+.   -...      .++.+|.. ..+++++.|..+++||.
T Consensus       232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~  311 (559)
T KOG1334|consen  232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ  311 (559)
T ss_pred             cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence                 00         0001122222222222222211111   0001      23344433 36888888888888888


Q ss_pred             CCCee------eEEEeccCc-cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC--ceee---eeecccccCCCC
Q 023672          156 TTGLL------RCTYRAYDA-VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR--DFEK---YSTLKGNKEGQA  222 (279)
Q Consensus       156 ~~~~~------~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~--~~~~---~~~~~~~~~~~~  222 (279)
                      +.-..      +..+..+.. ......|++++|+.++.-++++ .|-.|+++.-..+.-  +...   -...+..+++|.
T Consensus       312 R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr  391 (559)
T KOG1334|consen  312 RRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHR  391 (559)
T ss_pred             cchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccc
Confidence            75321      122222111 1223378999999777666655 899999995443211  1000   011222246775


Q ss_pred             C--ceEEEEE-ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          223 G--IMSAIAF-SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       223 ~--~v~~~~~-sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      .  .|..+-| -| ...++++|+.-|.|.||+-.+++.+..+.+-..-|+||.=||
T Consensus       392 N~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  392 NSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             cccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence            4  4667766 57 889999999999999999999887777666555666665554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.19  E-value=3.1e-09  Score=77.11  Aligned_cols=181  Identities=12%  Similarity=0.057  Sum_probs=114.7

Q ss_pred             EEEEEcc-----CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           64 KGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        64 ~~~~~~~-----~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ..|.|.|     ..-+||.|+.-|...+|...+......  .|             . .+...|.-+.-      .....
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~--~c-------------d-~snn~v~~~~r------~cd~~  128 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY--QC-------------D-VSNNDVTLVKR------YCDLK  128 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCccccee--ee-------------c-ccccchhhhhh------hcccc
Confidence            3455655     345899999999999999986432110  00             0 01111110000      00011


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeecccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      .-+..++.|.++++.++.-+..........-     .+.++++++++++++ +|....|..|.+...+.-.... ..   
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~---  199 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YE---  199 (344)
T ss_pred             cceeeccCCcceeEEEEecCcccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-Ee---
Confidence            2456678888888888875544333332221     367899999999999 5688999999998743322221 11   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE-----EEEeecCCCEEEEEEccCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-----YVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~v~~~~~spdg  277 (279)
                       ....+.-.+..|+. +...+|++..||++.|||+|.....     .+-+.|.+.++.+.|+|-|
T Consensus       200 -a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  200 -APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             -cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence             12233345778999 8889999999999999999875421     2334588999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=1.5e-08  Score=80.59  Aligned_cols=182  Identities=16%  Similarity=0.246  Sum_probs=116.0

Q ss_pred             CCCceEEEEEccCCC--eEEE-----eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           59 PNNFLKGIKWSPDGS--SFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        59 h~~~v~~~~~~~~~~--~l~t-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      |...|+.+.++|.+.  .+|+     .+.=+.|+||...............+             ... .-..+.|++..
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------------Fka-dkvqm~WN~~g  229 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------------FKA-DKVQMKWNKLG  229 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------------ccc-ceeEEEeccCC
Confidence            567799999998643  4543     45567899998874333222111111             111 11233443221


Q ss_pred             cccCCCCc-EEEEecCC---------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEE
Q 023672          132 SASDPTSC-VFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRV  198 (279)
Q Consensus       132 ~~~~~~~~-~l~s~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~  198 (279)
                      .     +- .|++...|         .+++++++........+...+      +|.++.|+|+++.++  -| .-..+.+
T Consensus       230 t-----~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G------PVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  230 T-----ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG------PVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             c-----eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC------CceEEEECCCCCEEEEEEecccceEEE
Confidence            0     11 12222223         368888887444444443333      999999999998777  36 7789999


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      ||++.     ..+..+      ..++-+++-|+| .|++|+.++-   -|.|-|||+.+.+++..+....  -+-..|+|
T Consensus       299 fnlr~-----~~v~df------~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P  364 (566)
T KOG2315|consen  299 FNLRG-----KPVFDF------PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP  364 (566)
T ss_pred             EcCCC-----CEeEeC------CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC
Confidence            99996     222222      245667889999 8888887765   4679999999999988887644  45688999


Q ss_pred             CCCC
Q 023672          276 SAYT  279 (279)
Q Consensus       276 dg~~  279 (279)
                      ||+|
T Consensus       365 dGe~  368 (566)
T KOG2315|consen  365 DGEY  368 (566)
T ss_pred             CCcE
Confidence            9986

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.16  E-value=3.2e-10  Score=84.78  Aligned_cols=175  Identities=14%  Similarity=0.181  Sum_probs=105.1

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .+..+.+|.+.|.+++|.|....|.+|..|..+.+||+.....                .......+...|..+++    
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g----------------~~~el~gh~~kV~~l~~----  248 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG----------------TAYELQGHNDKVQALSY----  248 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc----------------eeeeeccchhhhhhhhh----
Confidence            3347889999999999999999999999999999999974322                11123445556666655    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEE-E----------------------------eccCccccccceeeEEEC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCT-Y----------------------------RAYDAVDEITAAFSVAFN  182 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~-~----------------------------~~~~~~~~~~~v~~~~~~  182 (279)
                         -+-.+.+.+++.||.|.+||.+....... .                            +.|........|...+-+
T Consensus       249 ---~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s  325 (404)
T KOG1409|consen  249 ---AQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS  325 (404)
T ss_pred             ---hhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence               23455789999999999999975432111 0                            000000011122222222


Q ss_pred             CCCCEEEEecCCeEEEEEccCCC---CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          183 PTGTKIFAGYNKSVRVFDVHRPG---RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       183 ~~~~~l~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      ....+...|..-.+|+-|--.+.   .+...+..+    ..-...|+.+.+.. .-.+|+|++.|..|+|||++.
T Consensus       326 ~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p----hei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  326 NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP----HEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             CccccccccceeEEEEecccchhhhcCCCCccccc----cccccceeEEEhhh-hccceeecCCceEEEEEechh
Confidence            22222223333445554432210   000111111    22234588999988 667999999999999999874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=1e-09  Score=82.24  Aligned_cols=183  Identities=16%  Similarity=0.241  Sum_probs=115.6

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ..+|+-.|++++++.|+..++++. |-.|.+|.++-...  ..+.....+       .....-..-|++..|+|.     
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~--sFnIVDIKP-------~nmEeLteVITsaEFhp~-----  224 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ--SFNIVDIKP-------ANMEELTEVITSAEFHPH-----  224 (433)
T ss_pred             cccceeEeeeeeecCccceEeecc-ceeeeeccccccCC--ceeEEEccc-------cCHHHHHHHHhhhccCHh-----
Confidence            457999999999999999888776 78999999873211  000000000       000000123455556554     


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCee----eEEEeccCcc-------ccccceeeEEECCCCCEEEEecCCeEEEEEccCC
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLL----RCTYRAYDAV-------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP  204 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~----~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~  204 (279)
                       ..+.++.++..|+|++.|++....    .+.+..+..+       +-...|..+.|+++|+++++-.=-+|++||+...
T Consensus       225 -~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme  303 (433)
T KOG1354|consen  225 -HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME  303 (433)
T ss_pred             -HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence             345788888899999999985421    1112211111       1123688999999999999876689999999776


Q ss_pred             CCceeeeeeccccc-------C-CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          205 GRDFEKYSTLKGNK-------E-GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       205 ~~~~~~~~~~~~~~-------~-~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      .++...........       . ..-..-..++|+. ++..++||+..+.++++++..|
T Consensus       304 ~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  304 AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCC
Confidence            66655442221100       0 0011234678998 8889999999999999996544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=5e-08  Score=73.86  Aligned_cols=186  Identities=12%  Similarity=0.165  Sum_probs=119.5

Q ss_pred             eEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           63 LKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      +....|+|++++|++..- --.|.+|++..+.+.....              .....+       ..|..+.|+|++++.
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~--------------~~v~~G-------~GPRHi~FHpn~k~a  205 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP--------------AEVKPG-------AGPRHIVFHPNGKYA  205 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc--------------cccCCC-------CCcceEEEcCCCcEE
Confidence            888999999999987753 2369999999765422111              111111       235556779999988


Q ss_pred             EEecC-CCcEEEEECCCC-eeeEEEe----ccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeee
Q 023672          142 ASTTR-DHPIHLWDATTG-LLRCTYR----AYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       142 ~s~~~-d~~i~i~d~~~~-~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +...+ +++|-+|..... .....+.    .+.......+.-.|.++++|++|+++  ....|.+|.+...+..+.....
T Consensus       206 Y~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~  285 (346)
T COG2706         206 YLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI  285 (346)
T ss_pred             EEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence            77654 889999998763 2222222    12222233367789999999999976  4558999988875444443333


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEec--CCCeEEEEEe-ecCCCEEEEEEc
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYRE--DNMELLYVLH-GQEGGVTHVSKL  274 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~--~~~~~~~~~~-~~~~~v~~~~~s  274 (279)
                      .    ..+......+.|+| ++.+|+++.+++ .|.+|..  .+|++..... .......|+.|.
T Consensus       286 ~----~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         286 T----PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             e----ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            2    33444578899999 888888887655 4777765  4565543322 233455677775

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.13  E-value=3.4e-08  Score=72.62  Aligned_cols=186  Identities=12%  Similarity=0.198  Sum_probs=112.6

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC-CcEE
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-SCVF  141 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l  141 (279)
                      =.-++||||+..||.+...|+|++||+.....-.......           ....-...|..+.|.....  ++. ...|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~-----------~~~d~~~Aiagl~Fl~~~~--s~~ws~EL  112 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS-----------FPGDLSDAIAGLIFLEYKK--SAQWSYEL  112 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc-----------cCCccccceeeeEeecccc--ccccceeE
Confidence            4568999999999999999999999998543311111000           0111233555555543311  222 2356


Q ss_pred             EEecCCCcEEEEECCCC-----eeeEEEeccCccccccceeeEEECCCCCEEEE-e-cCC----------eEEEEEccCC
Q 023672          142 ASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNK----------SVRVFDVHRP  204 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~----------~i~~~d~~~~  204 (279)
                      ++-..+|.++-|-+..+     +....+.....  ....|.++.++|..++|++ | ...          -+..|.+-.+
T Consensus       113 lvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~--yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~  190 (282)
T PF15492_consen  113 LVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH--YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD  190 (282)
T ss_pred             EEEeccceeeeEEEEcccCCcceeeEEEEeccc--CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence            66777888887776332     22333332111  1227899999999888874 4 221          3566666542


Q ss_pred             CCce-eee----------------eecc-----cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          205 GRDF-EKY----------------STLK-----GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       205 ~~~~-~~~----------------~~~~-----~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                       .+. +..                ..+.     .........|..+..|| ++.+||+...+|.|.+|++.+.++.....
T Consensus       191 -~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  191 -SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             -CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence             111 100                0000     00012356799999999 99999999999999999999988777665


Q ss_pred             ecC
Q 023672          263 GQE  265 (279)
Q Consensus       263 ~~~  265 (279)
                      .++
T Consensus       269 ~~e  271 (282)
T PF15492_consen  269 QDE  271 (282)
T ss_pred             hhh
Confidence            443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=5.3e-08  Score=79.03  Aligned_cols=173  Identities=13%  Similarity=0.083  Sum_probs=101.2

Q ss_pred             ceEEEEEccCCCe-EEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           62 FLKGIKWSPDGSS-FLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        62 ~v~~~~~~~~~~~-l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .+....|+|||+. ++..+.   +..|.++|+.+++...                 +. ...+......|       +||
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-----------------lt-~~~g~~~~~~~-------SPD  243 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-----------------IA-SSQGMLVVSDV-------SKD  243 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-----------------Ee-cCCCcEEeeEE-------CCC
Confidence            6778999999985 554443   3568888887654311                 11 12222333444       888


Q ss_pred             CcEEEEe-cCC--CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCCCceee
Q 023672          138 SCVFAST-TRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEK  210 (279)
Q Consensus       138 ~~~l~s~-~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~~~~~~  210 (279)
                      |+.++.. +.+  ..|.++|+.+++... +.....     ......|+|||+.|+ ++ ..+  .|.++|+.++ . .+.
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~-----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~-~~r  315 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG-----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S-VEQ  315 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCC-----ccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEe
Confidence            8766544 333  468888988776443 322221     123468999998877 44 333  6777787753 1 111


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCC---------CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      + +.    .+..    ...|+| +|..|+..+..         ..|.+.|+.+++.. .+... .......|+|||+.
T Consensus       316 l-t~----~g~~----~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~  381 (419)
T PRK04043        316 V-VF----HGKN----NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGS  381 (419)
T ss_pred             C-cc----CCCc----CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCE
Confidence            1 11    1111    248999 67766655433         26888898887643 34322 22346889999973

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.12  E-value=1e-08  Score=81.90  Aligned_cols=180  Identities=12%  Similarity=0.198  Sum_probs=130.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEc------c--------------CCCeEEEeeCCCeEEEEeCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWS------P--------------DGSSFLTSSEDKTLRIFSLPENGI   94 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~--------------~~~~l~t~~~dg~i~iwd~~~~~~   94 (279)
                      .+++|+...+++..-+.+...+   .+..++..|.      |              +-..++-|...|.|.+|+...++.
T Consensus        16 ~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i   92 (541)
T KOG4547|consen   16 RLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI   92 (541)
T ss_pred             eEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence            5788999988876644433222   2334444442      1              223567788899999999998765


Q ss_pred             ccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccccc
Q 023672           95 SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT  174 (279)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  174 (279)
                      ....               ....|.+.|.++.|       +.+-..|.+++.|..+..|+....+..+.......     
T Consensus        93 t~~~---------------st~~h~~~v~~~~~-------~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-----  145 (541)
T KOG4547|consen   93 TAKL---------------STDKHYGNVNEILD-------AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-----  145 (541)
T ss_pred             EEEE---------------ecCCCCCcceeeec-------ccccCceEecCCceeEEEEecccceeeeeeccCCC-----
Confidence            4321               12346678888876       55666899999999999999999999998887776     


Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC-----CcEEE-EEeCCCcEE
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLA-IGSYSQTSA  248 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~~l~-~~~~dg~i~  248 (279)
                      .+.+++++||+..++++ .+.|++||+++.    +.+..+    .+|.++|.++.|.. .     |.+++ +...+.-|.
T Consensus       146 ~~~sl~is~D~~~l~~a-s~~ik~~~~~~k----evv~~f----tgh~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~  215 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTA-SRQIKVLDIETK----EVVITF----TGHGSPVRTLSFTT-LIDGIIGKYVLSSAAAERGIT  215 (541)
T ss_pred             ccceEEEcCCCCEEEec-cceEEEEEccCc----eEEEEe----cCCCcceEEEEEEE-eccccccceeeecccccccee
Confidence            78899999998887743 468999999984    444555    89999999999987 4     44444 445555678


Q ss_pred             EEecCC
Q 023672          249 IYREDN  254 (279)
Q Consensus       249 ~wd~~~  254 (279)
                      +|-+..
T Consensus       216 ~w~v~~  221 (541)
T KOG4547|consen  216 VWVVEK  221 (541)
T ss_pred             EEEEEc
Confidence            886654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=1.6e-09  Score=79.43  Aligned_cols=171  Identities=13%  Similarity=0.139  Sum_probs=113.3

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..++|.-.++...|+. +.+.+++|+.|+.+.-||++-.+               .++......|...|.++.-+|    
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---------------~~i~~n~kvH~~GV~SI~ss~----  220 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---------------TFIWHNSKVHTSGVVSIYSSP----  220 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---------------ceeeecceeeecceEEEecCC----
Confidence            6778999999999976 55788999999999999998321               111111222334566665433    


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCC-CeeeEEEeccCccccccceeeEEECCCC--CEEEEecCCeEEEEEccCCCCceee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAGYNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~~~~  210 (279)
                        |.+.+|++|+.|..|++||.++ ++++..-...+      .|+.+.++|.-  .+++++.-...+|-+.......   
T Consensus       221 --~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G------GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e---  289 (339)
T KOG0280|consen  221 --PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG------GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE---  289 (339)
T ss_pred             --CCCceEEEeccccceeeeehhcccCccccCcccc------ceEEEEecchhhhHHHHHHHhcCceEEEecccccc---
Confidence              4677999999999999999985 56665544443      89999999974  3444665555677777653222   


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEE-EEecCCCe
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSA-IYREDNME  256 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~-~wd~~~~~  256 (279)
                      ........+.|.+-++.-.|.. -..+|++++ .|+.|+ +|-.-++.
T Consensus       290 ~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  290 FQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             hheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence            2222233367777777777755 445788765 466644 66554443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.11  E-value=3.8e-10  Score=58.93  Aligned_cols=37  Identities=32%  Similarity=0.561  Sum_probs=34.3

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEe
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS   88 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd   88 (279)
                      ....+.+|.+.|++|+|+|++++|++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3457889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.09  E-value=5.1e-10  Score=99.79  Aligned_cols=166  Identities=17%  Similarity=0.260  Sum_probs=120.2

Q ss_pred             CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      .-|-..|.++.=+|...+.+||+.||.|++|....++.                +..........|+.+.       |+.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----------------v~~~rt~g~s~vtr~~-------f~~ 2261 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----------------VVCFRTAGNSRVTRSR-------FNH 2261 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----------------EEEeeccCcchhhhhh-------hcc
Confidence            33456688888888888999999999999999875432                1112222224555554       477


Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee---cCCeEEEEEccCCCCceeeee
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      +|+.+..+..||.+.+|.+. .++....+.|..     ......|-.  ..++ +|   .++.+.+||...+... ..  
T Consensus      2262 qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk-----~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~-- 2330 (2439)
T KOG1064|consen 2262 QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK-----ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SL-- 2330 (2439)
T ss_pred             cCCceeeeccCCceeecccC-CcceeccccCCc-----cccceeeee--hhhhccccCCCCCcccchhcccCccc-ce--
Confidence            89999999999999999987 555666666654     556666665  3444 33   5689999998763211 11  


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                       +.   ..|.+.++++++-| ..++|++|+.+|.|++||++..+++.++
T Consensus      2331 -v~---~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2331 -VH---TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             -ee---eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHh
Confidence             11   58899999999999 9999999999999999999877655444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.05  E-value=2.4e-06  Score=64.80  Aligned_cols=180  Identities=14%  Similarity=0.241  Sum_probs=112.6

Q ss_pred             eEEEEEc-cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec----CCCceEEEEeeCcccccCCC
Q 023672           63 LKGIKWS-PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT----EGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        63 v~~~~~~-~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ..++++. +++. |+.+..++ +.++|..++.....                ....    .....+++       +++++
T Consensus        42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~----------------~~~~~~~~~~~~~ND~-------~vd~~   96 (246)
T PF08450_consen   42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL----------------ADLPDGGVPFNRPNDV-------AVDPD   96 (246)
T ss_dssp             EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE----------------EEEETTCSCTEEEEEE-------EE-TT
T ss_pred             CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE----------------eeccCCCcccCCCceE-------EEcCC
Confidence            6777887 5654 55555544 55668886533211                1110    12234444       45888


Q ss_pred             CcEEEEecCC--------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672          138 SCVFASTTRD--------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       138 ~~~l~s~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~  207 (279)
                      |++.++....        |.|..++.. ++.......-.      ..+.|+|+|+++.|+ +- ..+.|..|++...+..
T Consensus        97 G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~  169 (246)
T PF08450_consen   97 GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE  169 (246)
T ss_dssp             S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred             CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc------cccceEECCcchheeecccccceeEEEeccccccc
Confidence            9877765543        457777776 55443333222      567999999999887 43 7888999999764432


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc-cCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL-SSA  277 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-pdg  277 (279)
                      +.....+. ......+..-.+++.. +|.+.++....+.|.++|.. |+.+..+......+++++|. ||.
T Consensus       170 ~~~~~~~~-~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  170 LSNRRVFI-DFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG  237 (246)
T ss_dssp             EEEEEEEE-E-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred             eeeeeeEE-EcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence            32222221 1122224578899999 88888888788999999987 99888888776689999994 554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=5.3e-08  Score=87.46  Aligned_cols=182  Identities=13%  Similarity=0.111  Sum_probs=108.9

Q ss_pred             EEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE-
Q 023672           64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-  141 (279)
Q Consensus        64 ~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-  141 (279)
                      .+++|+| ++..+++.+.++.|++||..++....-..       . ...... .... .....-..|..++++|++..| 
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G-------~-G~~~~~-~g~~-~~~~~~~~P~GIavspdG~~LY  755 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG-------D-GYERNL-NGSS-GTSTSFAQPSGISLSPDLKELY  755 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec-------C-CccccC-CCCc-cccccccCccEEEEeCCCCEEE
Confidence            5789999 56666777778999999987654311000       0 000000 0000 001112356667889998844 


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEecc----------C---c---cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAY----------D---A---VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~----------~---~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      ++-+.++.|++||+.++.........          .   .   .........++++++|.++++. .++.|++||..++
T Consensus       756 VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        756 IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             EEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            45566789999999876532111000          0   0   0001134689999999877765 8899999999863


Q ss_pred             CCceeeeeeccc------ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672          205 GRDFEKYSTLKG------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       205 ~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                       ........-..      ...+.-.....+++++ +|.++++-+.++.|++||+.+++.
T Consensus       836 -~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        836 -RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -eEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence             11111100000      0012223577899999 888999989999999999988764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.2e-08  Score=78.82  Aligned_cols=134  Identities=19%  Similarity=0.253  Sum_probs=89.9

Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEE--ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-E
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFAS--TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A  190 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~  190 (279)
                      +.....++|.++.|       +++++.+++  |-.-.++.|+|++ +.++..+...       +=.++-|+|.|++++ +
T Consensus       265 V~L~k~GPVhdv~W-------~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg-------pRN~~~fnp~g~ii~lA  329 (566)
T KOG2315|consen  265 VPLLKEGPVHDVTW-------SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG-------PRNTAFFNPHGNIILLA  329 (566)
T ss_pred             EecCCCCCceEEEE-------CCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC-------CccceEECCCCCEEEEe
Confidence            55566789999999       555655544  4556789999986 5555555432       336899999999988 6


Q ss_pred             e---cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC------CCcEEEEecCCCeEEEEE
Q 023672          191 G---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVL  261 (279)
Q Consensus       191 ~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~  261 (279)
                      |   ..|.|-+||+.+.    +++..+.      ....+-+.|+| +|.+++|++.      |+.++||+. +|.++..-
T Consensus       330 GFGNL~G~mEvwDv~n~----K~i~~~~------a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~  397 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNR----KLIAKFK------AANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEK  397 (566)
T ss_pred             ecCCCCCceEEEeccch----hhccccc------cCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe-cCceeehh
Confidence            6   3589999999872    3333331      12345689999 8999988864      678999997 55554332


Q ss_pred             eecCCCEEEEEEcc
Q 023672          262 HGQEGGVTHVSKLS  275 (279)
Q Consensus       262 ~~~~~~v~~~~~sp  275 (279)
                      .-.. ....+.|-|
T Consensus       398 ~f~s-EL~qv~W~P  410 (566)
T KOG2315|consen  398 MFKS-ELLQVEWRP  410 (566)
T ss_pred             hhhH-hHhheeeee
Confidence            2111 345555554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=1.7e-09  Score=81.13  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=89.0

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCC-----eeeEEEeccCccccccceeeEEECC-CCCEEEEe-cCCeEEEEEccCCCCc
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~~~d~~~~~~~  207 (279)
                      ...++++..|...|.|..+|++.+     .+...+. |+.     .|+++..-. ++.+|.++ .+|.|++||++.- +.
T Consensus       261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S-----svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~  333 (425)
T KOG2695|consen  261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS-----SVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KC  333 (425)
T ss_pred             cccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc-----chhhhhhhccccceEeeccCcCceeEeeehhh-hc
Confidence            555779999999999999999875     2233333 333     788887766 56677655 9999999999973 22


Q ss_pred             eeeeeecccccCCCCCce--EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC----CEEEEEEc
Q 023672          208 FEKYSTLKGNKEGQAGIM--SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----GVTHVSKL  274 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s  274 (279)
                      .+.+...    .+|-..-  .-+-..+ ....+++++.|...+||.++.+.++.+++....    .+.+++|.
T Consensus       334 ~~~V~qY----eGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  334 KKSVMQY----EGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccceeee----eccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            2224444    4553322  2233455 566888899999999999999999988875432    45666665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=3.6e-08  Score=81.10  Aligned_cols=206  Identities=16%  Similarity=0.157  Sum_probs=124.6

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ......|++|+....++|+|+.||.++|..+.+.........  +.....-.......+|...|..+.|       +.+.
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTW-------Ne~~   83 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTW-------NENN   83 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEe-------cccc
Confidence            345689999999999999999999999999876543222211  1111111122234567889999988       6677


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC--------CC---
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP--------GR---  206 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~--------~~---  206 (279)
                      +.|-++..+|.|.+|-+-.|.....+......   +-|.+++|+.+|..+... .||.|.+=.+..+        +.   
T Consensus        84 QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~  160 (1189)
T KOG2041|consen   84 QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA  160 (1189)
T ss_pred             ccccccCCCceEEEEeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhecc
Confidence            88999999999999999877654443332221   257788888888777644 6666554443321        00   


Q ss_pred             ---------------------------------ceeeeeecccccCCCCCceEEEEEc--------cCCCcEEEEEeCCC
Q 023672          207 ---------------------------------DFEKYSTLKGNKEGQAGIMSAIAFS--------PTHTGMLAIGSYSQ  245 (279)
Q Consensus       207 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~s--------p~~~~~l~~~~~dg  245 (279)
                                                       ...+.......+......+..++|.        | +...|+.+-.+|
T Consensus       161 hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~lavcy~nG  239 (1189)
T KOG2041|consen  161 HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRLAVCYANG  239 (1189)
T ss_pred             ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEEEEEEcCc
Confidence                                             0000011111112222335566664        3 566788888889


Q ss_pred             cEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          246 TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       246 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+.|..-.+......+. -...+.++.|+|+|-
T Consensus       240 r~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~  271 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA  271 (1189)
T ss_pred             eehhhhhcCCCCCeEEe-cccEeecceecCCCc
Confidence            88876544332222222 225677888888874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=3.2e-08  Score=78.91  Aligned_cols=97  Identities=16%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             ceeeEEECCCCCEEE--Ee--cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE---eCCCcE
Q 023672          175 AAFSVAFNPTGTKIF--AG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG---SYSQTS  247 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~--~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~---~~dg~i  247 (279)
                      .|...+|-|.|..++  +|  ...++.+|-+++.......+..+.      ....+.+-|+| .|++++.+   |..|.+
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d------k~~~N~vfwsP-kG~fvvva~l~s~~g~l  519 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD------KKFANTVFWSP-KGRFVVVAALVSRRGDL  519 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc------ccccceEEEcC-CCcEEEEEEecccccce
Confidence            677899999997776  45  356899999986444444444442      23467899999 89988876   457889


Q ss_pred             EEEecCCCeEEEE-EeecCCCEEEEEEccCCCC
Q 023672          248 AIYREDNMELLYV-LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       248 ~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~~  279 (279)
                      .++|+.-..+..+ ...|. ..+.+.|.|.|||
T Consensus       520 ~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRY  551 (698)
T KOG2314|consen  520 EFYDTDYADLKDTASPEHF-AATEVEWDPTGRY  551 (698)
T ss_pred             EEEecchhhhhhccCcccc-ccccceECCCCCE
Confidence            9999875333222 12233 4577899999997

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=1.8e-06  Score=67.64  Aligned_cols=218  Identities=13%  Similarity=0.094  Sum_probs=122.8

Q ss_pred             eeeeEecCCCCcccceeeeeeccC-CCCCceEEEEEccCCCeEEEee-C-CCeEEEEeCCCCcccccccc--cccc--C-
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSS-E-DKTLRIFSLPENGISYDVNA--CSLA--K-  105 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~-~-dg~i~iwd~~~~~~~~~~~~--~~~~--~-  105 (279)
                      -.+.+||..+.+.......-.... .....-..++++|||++|++.. . +..|.+.|+.+++.......  |...  . 
T Consensus        77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~  156 (352)
T TIGR02658        77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA  156 (352)
T ss_pred             CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec
Confidence            357788888888765322100000 0012234788999999998776 3 78999999998876443221  1110  0 


Q ss_pred             -------CCCcccceeeecCCCc--eEEEE-eeC------cccccCC-CCcEEEEecCCCcEEEEECCCC-----eeeEE
Q 023672          106 -------DQDSYEASLVVTEGES--VYDFC-WFP------HMSASDP-TSCVFASTTRDHPIHLWDATTG-----LLRCT  163 (279)
Q Consensus       106 -------~~~~~~~~~~~~~~~~--v~~~~-~~~------~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~-----~~~~~  163 (279)
                             +.+.....+.....+.  +.... |.+      ....+.+ ++.++..... |+|.+.|+...     .....
T Consensus       157 e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       157 NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence                   0111111111111000  11111 111      1112234 7777776665 99999996543     22222


Q ss_pred             EeccCccc--cccceeeEEECCCCCEEEEe-c--C--------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672          164 YRAYDAVD--EITAAFSVAFNPTGTKIFAG-Y--N--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       164 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~--d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                      +.......  ......-++++|+++.+++. .  .        +.|.++|..+.    +....+.   .  ...+..+++
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~---v--G~~~~~iav  306 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIE---L--GHEIDSINV  306 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEe---C--CCceeeEEE
Confidence            22111100  11133459999999888852 1  2        57999999884    3333331   1  236889999


Q ss_pred             ccCCCc-EEEEEe-CCCcEEEEecCCCeEEEEEe
Q 023672          231 SPTHTG-MLAIGS-YSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       231 sp~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~~  262 (279)
                      +| ++. +|++.. .++.|.++|..+++.+.++.
T Consensus       307 S~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       307 SQ-DAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CC-CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            99 666 776655 67889999999999998884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=2e-07  Score=67.95  Aligned_cols=167  Identities=11%  Similarity=0.052  Sum_probs=108.4

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCcccccCCCCcEE
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      ++.+++++|++++++.++...|-.|.++.....               ...+. ......-.+.       .|+.....+
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---------------~~~~~~a~t~D~gF~~-------S~s~~~~~F  218 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---------------IENIYEAPTSDHGFYN-------SFSENDLQF  218 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccce---------------eeeeEecccCCCceee-------eeccCcceE
Confidence            788999999999999999999999999753221               00111 1111122333       347778899


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      |++..||++.|||++...............+.+.+..+.|++-|  .+|+.+ .-+.+.+.|+++ ....+.+.......
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~  297 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE  297 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc
Confidence            99999999999999986544433333333445589999999866  456655 788999999998 44444443333333


Q ss_pred             CCCCC-ceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          219 EGQAG-IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       219 ~~~~~-~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      ..|.. .+...+|+. ++.-+.+.+++. +.=|++.+
T Consensus       298 ~~~~tq~ifgt~f~~-~n~s~~v~~e~~-~ae~ni~s  332 (344)
T KOG4532|consen  298 RKHNTQHIFGTNFNN-ENESNDVKNELQ-GAEYNILS  332 (344)
T ss_pred             ccccccccccccccC-CCcccccccchh-hheeeccc
Confidence            33433 377788887 555555555443 44455543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.98  E-value=5e-09  Score=86.15  Aligned_cols=199  Identities=16%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc----------------------ccc------c----cccccCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS----------------------YDV------N----ACSLAKDQ  107 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----------------------~~~------~----~~~~~~~~  107 (279)
                      .+.+.++..+|.|+-++.+++-|. .+-|+......                      .+.      +    .-.++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            355777888888887777777663 34455432110                      000      0    00011123


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCC-C
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPT-G  185 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~  185 (279)
                      +..+..+.-+|+..|+++.|+|.    +|+  .+++++.|..+..||+++.. +......-..     ....+.|+.. +
T Consensus       103 ~~aIef~lhghsraitd~n~~~q----~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-----~asqVkwnyk~p  171 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQ----HPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-----AASQVKWNYKDP  171 (1081)
T ss_pred             ccceEEEEecCccceeccccCCC----CCc--ceeeccccccceeeeccCCCcceeeeecccc-----cCceeeecccCc
Confidence            33444455567778888888776    444  89999999999999999864 4444443333     4567899865 4


Q ss_pred             CEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE-EEEeec
Q 023672          186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-YVLHGQ  264 (279)
Q Consensus       186 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~  264 (279)
                      ..++++....|++||++.++.+.-   .+    ++|...|..++|...-...+.+.+.||+|++||....... ......
T Consensus       172 ~vlasshg~~i~vwd~r~gs~pl~---s~----K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  172 NVLASSHGNDIFVWDLRKGSTPLC---SL----KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             chhhhccCCceEEEeccCCCcceE---Ee----cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence            556666889999999998654433   33    5678889999998755667889999999999998654321 122223


Q ss_pred             CCCEEEEEEccCC
Q 023672          265 EGGVTHVSKLSSA  277 (279)
Q Consensus       265 ~~~v~~~~~spdg  277 (279)
                      ..+|+--.+-|-|
T Consensus       245 ~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFG  257 (1081)
T ss_pred             cCcceeccccccC
Confidence            4466666666543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.97  E-value=2.5e-07  Score=70.01  Aligned_cols=193  Identities=15%  Similarity=0.092  Sum_probs=116.7

Q ss_pred             eeEecCCCCcccceee--eeeccCCCCCceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCC-ccccccccccccCCC
Q 023672           36 LIRFDVPPHRTYHFYN--QFRTSSIPNNFLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPEN-GISYDVNACSLAKDQ  107 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~~~  107 (279)
                      ..+||..++.......  .-+-+.||      -.|++||++|++.-.     .|.|-|||...+ ....           
T Consensus        30 ~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~-----------   92 (305)
T PF07433_consen   30 ALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG-----------   92 (305)
T ss_pred             EEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-----------
Confidence            4678888777665322  12244555      579999999987533     588999999832 1111           


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec------------------CCCcEEEEECCCCeeeEEEeccCc
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------------------RDHPIHLWDATTGLLRCTYRAYDA  169 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------------------~d~~i~i~d~~~~~~~~~~~~~~~  169 (279)
                                   ...+.-..|+.+.+.||+..|+.+.                  .+..+.+.|..+|+.+........
T Consensus        93 -------------E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   93 -------------EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             -------------EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence                         1111112344445567776665542                  234577778888887776554221


Q ss_pred             cccccceeeEEECCCCCEEEEe-cCC-------eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EE
Q 023672          170 VDEITAAFSVAFNPTGTKIFAG-YNK-------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AI  240 (279)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~-~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~  240 (279)
                      . +...+..+++.++|..+++. ..+       -+.+++...   .+..+..-......-.+.+-+|++++ ++.++ +|
T Consensus       160 ~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~t  234 (305)
T PF07433_consen  160 L-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVT  234 (305)
T ss_pred             c-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEE
Confidence            1 11278999999999888764 322       244444432   22222111111123356799999999 66555 55


Q ss_pred             EeCCCcEEEEecCCCeEEEEEee
Q 023672          241 GSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       241 ~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      +-..+.+.+||..+++.+.....
T Consensus       235 sPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             CCCCCEEEEEECCCCCEeecccc
Confidence            56677899999999998766553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.95  E-value=2.9e-07  Score=81.45  Aligned_cols=196  Identities=14%  Similarity=0.199  Sum_probs=114.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc------------------cccccCCC-Ccc------ccee
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------------------ACSLAKDQ-DSY------EASL  114 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~~-~~~------~~~~  114 (279)
                      ...|.+++||||+..|+.++.++++.+.+.. .....+..                  +.....+. .+.      ....
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            5689999999999999999989988876532 11000000                  00000000 000      0000


Q ss_pred             e------ecCCCceEEEEeeCcccccCCCCcEEEEecC---C---CcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672          115 V------VTEGESVYDFCWFPHMSASDPTSCVFASTTR---D---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (279)
Q Consensus       115 ~------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~---d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (279)
                      .      ......-..++|       -.||.++|+.+.   .   +.+++|+-+ |....+-.....     --.+++|.
T Consensus       199 ~~~d~~~~s~dd~~~~ISW-------RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g-----Le~~l~Wr  265 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISW-------RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG-----LEGALSWR  265 (928)
T ss_pred             CccccCccccCCCceEEEE-------CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC-----ccCCccCC
Confidence            0      001123334555       779999998865   2   579999955 665444432222     22479999


Q ss_pred             CCCCEEEEe-c---CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe--
Q 023672          183 PTGTKIFAG-Y---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--  256 (279)
Q Consensus       183 ~~~~~l~~~-~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~--  256 (279)
                      |.|++|++. .   ...|.+|.-+  |..-.   .+.-........|..++|++ ++.+|+..-.|. |.+|-..+..  
T Consensus       266 PsG~lIA~~q~~~~~~~VvFfErN--GLrhg---eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWY  338 (928)
T PF04762_consen  266 PSGNLIASSQRLPDRHDVVFFERN--GLRHG---EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWY  338 (928)
T ss_pred             CCCCEEEEEEEcCCCcEEEEEecC--CcEee---eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEE
Confidence            999999964 2   2455556544  22211   12111124456789999999 999999977665 9999988765  


Q ss_pred             EEEEEeec-CCCEEEEEEccC
Q 023672          257 LLYVLHGQ-EGGVTHVSKLSS  276 (279)
Q Consensus       257 ~~~~~~~~-~~~v~~~~~spd  276 (279)
                      +.+.+... ...+..+.|+|.
T Consensus       339 LKqei~~~~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  339 LKQEIRFSSSESVNFVKWDPE  359 (928)
T ss_pred             EEEEEEccCCCCCCceEECCC
Confidence            33444422 234455888885

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.94  E-value=4.3e-07  Score=81.77  Aligned_cols=205  Identities=10%  Similarity=0.118  Sum_probs=117.8

Q ss_pred             eEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC-ceEEEEeeCcccccCC-CCc
Q 023672           63 LKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDP-TSC  139 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~-~~~  139 (279)
                      -.+++++++++.|+++. ..+.|+++|+.++....-...-..     .    .....+. .....-..|..++++| ++.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~-----g----~~~~gg~~~~~~~ln~P~gVa~dp~~g~  696 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTK-----G----SDYQGGKKGTSQVLNSPWDVCFEPVNEK  696 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc-----c----CCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence            47889999887666554 457899999876532110000000     0    0000000 0000112344556677 566


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCc----------cccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDA----------VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~  207 (279)
                      ++++.+.++.|++||..++... .+.....          ......+..|+++|++..|+ +. .++.|++||+.+++..
T Consensus       697 LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~  775 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR  775 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            6677778899999999877543 2221100          00112456899999998666 44 7799999999864211


Q ss_pred             eeeee-----ecccccC--------CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe------------
Q 023672          208 FEKYS-----TLKGNKE--------GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------  262 (279)
Q Consensus       208 ~~~~~-----~~~~~~~--------~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------------  262 (279)
                      .....     .....+.        ..-.....+++++ +|.++++-..++.|++||..++.......            
T Consensus       776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~  854 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL  854 (1057)
T ss_pred             EEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence            00000     0000000        0112356899999 88899998999999999998876543221            


Q ss_pred             -ecCCCEEEEEEccCCC
Q 023672          263 -GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       263 -~~~~~v~~~~~spdg~  278 (279)
                       +.-....+|+++++|+
T Consensus       855 ~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        855 KAQLSEPAGLALGENGR  871 (1057)
T ss_pred             ccccCCceEEEEeCCCC
Confidence             1112568899999986

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.92  E-value=7.2e-09  Score=74.91  Aligned_cols=73  Identities=12%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .|.+++-+|..+.++ +| .||.+-+||.+...       .....+..|+.++..+-|+|.++..|+++++||.+.-||.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            588999999876665 67 89999999999741       2222337899999999999988999999999999999997


Q ss_pred             CC
Q 023672          253 DN  254 (279)
Q Consensus       253 ~~  254 (279)
                      .+
T Consensus       254 s~  255 (319)
T KOG4714|consen  254 ST  255 (319)
T ss_pred             CC
Confidence            64

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=1.2e-06  Score=71.21  Aligned_cols=187  Identities=10%  Similarity=0.088  Sum_probs=102.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE-eeCC--CeEEEEeCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT-SSED--KTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .++++|+.+++...       +....+.+....|+|||+.|+. .+.+  ..|.++|+.++....               
T Consensus       214 ~Iyv~dl~tg~~~~-------lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~---------------  271 (419)
T PRK04043        214 TLYKYNLYTGKKEK-------IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ---------------  271 (419)
T ss_pred             EEEEEECCCCcEEE-------EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE---------------
Confidence            45566666555432       2224455667889999987764 3334  457777776553211               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                        +.. ........       .|+|||+.|+..+. .+  .|.++|+.+++....... ..       ....|+|+|+.+
T Consensus       272 --LT~-~~~~d~~p-------~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-------~~~~~SPDG~~I  333 (419)
T PRK04043        272 --ITN-YPGIDVNG-------NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-------NNSSVSTYKNYI  333 (419)
T ss_pred             --ccc-CCCccCcc-------EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC-------cCceECCCCCEE
Confidence              110 11111112       35889987776653 23  588889888776443321 11       124899999988


Q ss_pred             E-Ee-cC--------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCc--EEEEecCCC
Q 023672          189 F-AG-YN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQT--SAIYREDNM  255 (279)
Q Consensus       189 ~-~~-~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~--i~~wd~~~~  255 (279)
                      + ++ ..        ..|.+.|+.++ . ..   .+..   .  .......|+| +|..|+..+. .+.  +.+.++.. 
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~---~LT~---~--~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~l~g-  401 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSD-Y-IR---RLTA---N--GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIRLNY-  401 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCC-C-eE---ECCC---C--CCcCCeEECC-CCCEEEEEEccCCcEEEEEEecCC-
Confidence            8 44 32        36788888763 1 12   2211   1  1223578999 7766655443 333  55666643 


Q ss_pred             eEEEEEeecCCCEEEEEE
Q 023672          256 ELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~  273 (279)
                      .....+....+.+...+|
T Consensus       402 ~~~~~l~~~~g~~~~p~W  419 (419)
T PRK04043        402 NKSFLFPLKVGKIQSIDW  419 (419)
T ss_pred             CeeEEeecCCCccCCCCC
Confidence            334445544455554443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.85  E-value=8e-06  Score=61.04  Aligned_cols=199  Identities=12%  Similarity=0.098  Sum_probs=105.4

Q ss_pred             ccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+-...+.+++|+|+.. ++++....+.|..++.+ ++....                +.....+..-.+.+      
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~----------------i~l~g~~D~EgI~y------   72 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR----------------IPLDGFGDYEGITY------   72 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE----------------EE-SS-SSEEEEEE------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE----------------EeCCCCCCceeEEE------
Confidence            4445556699999999755 56677778888888865 332211                22222233444444      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCe------eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccC--C
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR--P  204 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~--~  204 (279)
                       ..++.++++.-.++.+.++++....      ....+...........+..++|+|.++.+++. ...-..+|.++.  .
T Consensus        73 -~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~  151 (248)
T PF06977_consen   73 -LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG  151 (248)
T ss_dssp             --STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred             -ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence             4466677766668889988884321      12223322222233368899999987777755 555566666653  1


Q ss_pred             CCceeeeeecc-cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC---------CCEEEEEEc
Q 023672          205 GRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVSKL  274 (279)
Q Consensus       205 ~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s  274 (279)
                      ........... .........+.+++++|..+.+++....+..|..+| .+|+++..+.-..         ...-+|+|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence            11111111110 001233446889999998888899988999999999 7888776665333         247899999


Q ss_pred             cCCC
Q 023672          275 SSAY  278 (279)
Q Consensus       275 pdg~  278 (279)
                      ++|+
T Consensus       231 ~~G~  234 (248)
T PF06977_consen  231 PDGN  234 (248)
T ss_dssp             TT--
T ss_pred             CCCC
Confidence            9985

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.84  E-value=4.4e-07  Score=71.42  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=105.1

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCC-eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDK-TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ...+|.+.|.-..+.-+++-++.|..|| .+-|||..++....                  ....-+.|..+..      
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr------------------~e~~lg~I~av~v------  409 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR------------------IEKDLGNIEAVKV------  409 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE------------------eeCCccceEEEEE------
Confidence            5567888899999988888999999999 89999999775421                  1222245666644      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-----cCCeEEEEEccCCCCce
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~~~d~~~~~~~~  208 (279)
                       +++|++++.+.....|-+.|+.+++....-+....     -|+.+.|||+++++|-+     ....|+++|+..+ +..
T Consensus       410 -s~dGK~~vvaNdr~el~vididngnv~~idkS~~~-----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy  482 (668)
T COG4946         410 -SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIY  482 (668)
T ss_pred             -cCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEE
Confidence             88999999999899999999999986554443333     78999999999999943     4467999999873 222


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~  241 (279)
                      ... +.    .++   =.+-+|.| ++.+|.--
T Consensus       483 ~vT-T~----ta~---DfsPaFD~-d~ryLYfL  506 (668)
T COG4946         483 DVT-TP----TAY---DFSPAFDP-DGRYLYFL  506 (668)
T ss_pred             Eec-CC----ccc---ccCcccCC-CCcEEEEE
Confidence            211 11    122   23457778 66655443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=7.1e-08  Score=80.20  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=110.6

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .+.+.|++++  +++|+-|+.+|.|.+++......                   ....+..             ...+|.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------~~~~~s~-------------~~~~Ge   84 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------TNFDHSS-------------SILEGE   84 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------ccccccc-------------cccCCc
Confidence            4667787776  57899999999999999874210                   0111110             144789


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-----CCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-----GTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ++++|+.||+|.|-.+-+.+...++..+.      ++.+++++|+     .+.+++| ..| +.++.-+--+.....   
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~df~r------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v---  154 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYDFKR------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV---  154 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEecCC------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce---
Confidence            99999999999999999888888777766      8899999998     3556655 555 777765421111111   


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                         ....-.++|.+++|   .|+++|-++.+| |++||+.+.+.+..++..
T Consensus       155 ---~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p  198 (846)
T KOG2066|consen  155 ---VLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPP  198 (846)
T ss_pred             ---eeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCC
Confidence               11345689999999   557999998877 899999998877766543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.8e-08  Score=52.40  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=30.8

Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      .+|...|.+++|+| ++.+|++|+.|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            79999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=7.3e-07  Score=74.28  Aligned_cols=210  Identities=14%  Similarity=0.232  Sum_probs=133.6

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC------------CeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG------------SSFLTSSEDKTLRIFSLPENGISYDVNACSL  103 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  103 (279)
                      +.+.|..+.+.+.      .+.-|...|+.+.|.|-.            -+||++...|.|.+||...+....       
T Consensus        37 V~VVDs~s~q~iq------sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------  103 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQ------SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------  103 (1062)
T ss_pred             EEEEehhhhhhhh------ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-------
Confidence            3444544444443      677799999999998721            156788889999999998543211       


Q ss_pred             cCCCCcccceeeecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672          104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (279)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (279)
                                ...++..++.+++|.|.    -++. ..|+.-....+|.+|+..+|+...+......     ...|+.+.
T Consensus       104 ----------~l~~~~~~~qdl~W~~~----rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~D  164 (1062)
T KOG1912|consen  104 ----------WLSHSNDSVQDLCWVPA----RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVD  164 (1062)
T ss_pred             ----------hhcCCCcchhheeeeec----cCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeC
Confidence                      23456678899999764    3344 4667777788999999999998887766554     55668888


Q ss_pred             CC-CCEEE-EecCCeEEEEEccCCCC---ceeeeeeccccc------------CCCCC---------ceEEEEEccCCCc
Q 023672          183 PT-GTKIF-AGYNKSVRVFDVHRPGR---DFEKYSTLKGNK------------EGQAG---------IMSAIAFSPTHTG  236 (279)
Q Consensus       183 ~~-~~~l~-~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~------------~~~~~---------~v~~~~~sp~~~~  236 (279)
                      |- .+.+. .|..|.+.+-+.-....   +.+.++.-....            ..++.         ....++|+| .-.
T Consensus       165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~r  243 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWR  243 (1062)
T ss_pred             CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhh
Confidence            84 34443 55777766665532111   111111110000            00000         122457788 444


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      -++-......+.++|+.-..++..+.-..+.+.-+.|-||++
T Consensus       244 n~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  244 NILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR  285 (1062)
T ss_pred             ceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence            444445567799999988888888887777777788888765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.82  E-value=2e-07  Score=70.19  Aligned_cols=201  Identities=15%  Similarity=0.218  Sum_probs=108.0

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCC-Ccccccc-----ccccccCCCCcccceeeecCCCceEEEEee
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-NGISYDV-----NACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (279)
                      .+.||.+.|+....-|...-+++.+.|.+++||--.. ++.-...     ..+.......+....+.....+.++....+
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence            7889999999999989778899999999999996543 2221100     011100001111111111111222222110


Q ss_pred             Cc------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          129 PH------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       129 ~~------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      -.                  .+-|+-....+++.+.|..+..--.+.+..+..+....      ...++.+.-.  +.+.
T Consensus        99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFV  170 (404)
T ss_pred             hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEe
Confidence            00                  11123333455555555555433334443332222211      1112222111  3335


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE-EEEEeecCCCE
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGV  268 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v  268 (279)
                      | ..|.|.+-.+...  ....+.++    .+|.+.+++++|.| ...+|.+|..|..+.+||+.-.+- ...+.+|...|
T Consensus       171 Gd~~gqvt~lr~~~~--~~~~i~~~----~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV  243 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQN--GCQLITTF----NGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV  243 (404)
T ss_pred             cccccceEEEEEeec--CCceEEEE----cCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence            5 5666666555431  12233333    79999999999999 889999999999999999975542 35666666655


Q ss_pred             EE
Q 023672          269 TH  270 (279)
Q Consensus       269 ~~  270 (279)
                      ..
T Consensus       244 ~~  245 (404)
T KOG1409|consen  244 QA  245 (404)
T ss_pred             hh
Confidence            43

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.81  E-value=5e-08  Score=72.56  Aligned_cols=197  Identities=15%  Similarity=0.201  Sum_probs=112.3

Q ss_pred             CceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccc------------cccc---------cccCCCCcccceeeec
Q 023672           61 NFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYD------------VNAC---------SLAKDQDSYEASLVVT  117 (279)
Q Consensus        61 ~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~------------~~~~---------~~~~~~~~~~~~~~~~  117 (279)
                      ..|..+.|..++  ..++..+.|.+|++|.+.+......            ....         .....++..++    .
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia----a  161 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA----A  161 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE----e
Confidence            457888887654  3566777899999999876532100            0000         00001111111    1


Q ss_pred             CCCceE--EEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECCCCCEE--EE
Q 023672          118 EGESVY--DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKI--FA  190 (279)
Q Consensus       118 ~~~~v~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~  190 (279)
                      ....|+  ...++..++.++.+...++++. |-.|.+|++.-...   +..++.+.......-|++..|+|....+  ++
T Consensus       162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         162 KPCRVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             ccceeccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence            111111  1223344556677777777654 77899999875322   2333333332333367889999975333  36


Q ss_pred             ecCCeEEEEEccCCCCceeeeeeccc--------ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEE
Q 023672          191 GYNKSVRVFDVHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVL  261 (279)
Q Consensus       191 ~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~  261 (279)
                      +..|.|++-|+|...........+..        .+.+-...|..+.|++ +|+++++-+. -+++|||++.. .++.++
T Consensus       241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceee
Confidence            69999999999952111000001100        1122234688899999 9988887654 57999999854 567777


Q ss_pred             eec
Q 023672          262 HGQ  264 (279)
Q Consensus       262 ~~~  264 (279)
                      +.|
T Consensus       319 ~~h  321 (460)
T COG5170         319 PMH  321 (460)
T ss_pred             chH
Confidence            555

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.81  E-value=2.8e-08  Score=76.02  Aligned_cols=89  Identities=22%  Similarity=0.271  Sum_probs=70.1

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ..-||-..++.++|+||+++++++.+|..|+|-.....-                .+..+..+|..-|..++..      
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f----------------~IesfclGH~eFVS~isl~------  203 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF----------------VIESFCLGHKEFVSTISLT------  203 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc----------------chhhhccccHhheeeeeec------
Confidence            567899999999999999999999999999997765321                1112455677778777652      


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEecc
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY  167 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~  167 (279)
                        ++..|++++.|++|++||+.+|+.+.++...
T Consensus       204 --~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  204 --DNYLLLSGSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             --cCceeeecCCCCcEEEEecccCCcccccchh
Confidence              4456899999999999999999988766543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=8.5e-08  Score=72.24  Aligned_cols=148  Identities=10%  Similarity=0.099  Sum_probs=100.4

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      -.+.|.++.|...++++..|.++|.|..+|++.+..             .+.-+.....|+..|+++.-      +.-++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-------------G~~~~a~rlyh~Ssvtslq~------Lq~s~  311 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-------------GNGWCAQRLYHDSSVTSLQI------LQFSQ  311 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-------------CCCcceEEEEcCcchhhhhh------hcccc
Confidence            356789999998899999999999999999986421             11222345566677777653      12267


Q ss_pred             cEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeec
Q 023672          139 CVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      ++|.+.+.+|+|++||++--++   +..+.+|-...   .-.-+...+....++ +|.|-..++|.++.+    ..+.++
T Consensus       312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~---a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g----hLl~ti  384 (425)
T KOG2695|consen  312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS---AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG----HLLCTI  384 (425)
T ss_pred             ceEeeccCcCceeEeeehhhhcccceeeeecccccc---cccccccccccceEEEccCeeEEEEEecccC----ceeecc
Confidence            7999999999999999987666   67776665421   112234556666666 569999999999974    334444


Q ss_pred             ccccCCCCCceEEEEEcc
Q 023672          215 KGNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp  232 (279)
                      +.........+.+++|..
T Consensus       385 pf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  385 PFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             CCCCccccccccceehhc
Confidence            333334444566677653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=6.3e-08  Score=77.55  Aligned_cols=193  Identities=12%  Similarity=0.173  Sum_probs=120.4

Q ss_pred             eeeeeEecCCCC-cccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           33 TWPLIRFDVPPH-RTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        33 ~~~~~~~d~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      ...+..|.+.+. .-.....+..+...|+.+|.++.|-.+-++++++  ||-|.+||.--+.........          
T Consensus       756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da----------  823 (1034)
T KOG4190|consen  756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA----------  823 (1034)
T ss_pred             CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC----------
Confidence            335666765432 2222233444888999999999999998887765  789999997654432111000          


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                        -....++.|.++.        +-+...+ +.|+...+|+++|.+..+....++.....+...-+.+++..|.|+.+++
T Consensus       824 --pk~~a~~~ikcl~--------nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa  893 (1034)
T KOG4190|consen  824 --PKEGAGGNIKCLE--------NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA  893 (1034)
T ss_pred             --cccCCCceeEecc--------cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence              0111223333332        2233344 4447889999999999988888876655555457889999999999998


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEE-EecCCCeE
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI-YREDNMEL  257 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~-wd~~~~~~  257 (279)
                      + .+|.|.+.|.+++ .....+.....       ....++ .| ..+.|+....|.++.+ |..-.+..
T Consensus       894 ~LSnGci~~LDaR~G-~vINswrpmec-------dllqla-ap-sdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  894 ALSNGCIAILDARNG-KVINSWRPMEC-------DLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             HhcCCcEEEEecCCC-ceeccCCcccc-------hhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCee
Confidence            8 9999999999984 22222211110       111111 24 4556666666777777 76555443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=8.8e-09  Score=86.56  Aligned_cols=182  Identities=13%  Similarity=0.114  Sum_probs=116.8

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      +..+.+..|+...+|++|+-+.+.|++|+-.|.|++|++.+|....                 ....|+.+|+-+.-   
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-----------------s~ncH~SavT~veP--- 1151 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-----------------SVNCHQSAVTLVEP--- 1151 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-----------------cccccccccccccc---
Confidence            3444677788999999999999999999999999999999875432                 22345556666643   


Q ss_pred             ccccCCCCcEEEEecCC-C-cEEEEECCC-CeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672          131 MSASDPTSCVFASTTRD-H-PIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d-~-~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~  206 (279)
                          +.+|..+++.+.- . ...+|++.+ +....++..         -.++.|+.....-+.| ......+||+.+. .
T Consensus      1152 ----s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e---------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-~ 1217 (1516)
T KOG1832|consen 1152 ----SVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE---------DKAVKFSNSLQFRALGTEADDALLYDVQTC-S 1217 (1516)
T ss_pred             ----cCCcceeeeeccccCchHHHhccccccCccccccc---------cceeehhhhHHHHHhcccccceEEEecccC-c
Confidence                4566665555433 2 467999864 444555443         3478898775554545 6678899999984 2


Q ss_pred             ceee-eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          207 DFEK-YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       207 ~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      +... +...    .+....-+.+.|+| ...+++-   ||  .+||++..+.+..|...+..+. =.|||.|
T Consensus      1218 ~l~tylt~~----~~~~y~~n~a~FsP-~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g 1278 (1516)
T KOG1832|consen 1218 PLQTYLTDT----VTSSYSNNLAHFSP-CDTLILN---DG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSG 1278 (1516)
T ss_pred             HHHHhcCcc----hhhhhhccccccCC-CcceEee---Cc--eeeeeccHHHHhhhhhheeccc-ccccCCC
Confidence            2222 1111    22233346788999 6666653   45  3788887776666654442222 2366665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=7.4e-07  Score=73.70  Aligned_cols=184  Identities=10%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      +++.||.+.|..+.|+.+.+.|-|+..+|.|.||-+-.+....+.               +.......|.+++|      
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM---------------iNnRnKSvV~SmsW------  123 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM---------------INNRNKSVVVSMSW------  123 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------hhCcCccEEEEEEE------
Confidence            478999999999999999999999999999999999876543221               22334456788888      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeee-EEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEcc---------
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH---------  202 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~---------  202 (279)
                       +.+|..++....||.|.+=.++..+.- +.+++.       ....+.|++|.+.++.+ ..|.+.+||..         
T Consensus       124 -n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~-------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~  195 (1189)
T KOG2041|consen  124 -NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ-------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEK  195 (1189)
T ss_pred             -cCCCcEEEEEEccCCEEEEeeccceecchhcchh-------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhh
Confidence             667888888888887766555432211 111111       22345555555444433 44555555432         


Q ss_pred             ----------------------------------------------------CCCCceeeeeecccccCCCCCceEEEEE
Q 023672          203 ----------------------------------------------------RPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       203 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                                                                          +...+..         -...-.+..+.|
T Consensus       196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv---------~dtgm~~vgakW  266 (1189)
T KOG2041|consen  196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV---------VDTGMKIVGAKW  266 (1189)
T ss_pred             ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE---------EecccEeeccee
Confidence                                                                1100000         011235778899


Q ss_pred             ccCCCcEEEEEeCCC---------cEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          231 SPTHTGMLAIGSYSQ---------TSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       231 sp~~~~~l~~~~~dg---------~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++ +|.+|+.++.+.         .|.+|. .-|+.+.+++.....|++++|-..|
T Consensus       267 nh-~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  267 NH-NGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG  320 (1189)
T ss_pred             cC-CCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc
Confidence            99 999999887543         455554 4567788888888889999987655

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.69  E-value=9.1e-07  Score=74.93  Aligned_cols=151  Identities=11%  Similarity=0.097  Sum_probs=105.2

Q ss_pred             eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      |+-|+.  +++.+.+|...|+|.+-|..+.+...                 ....|.+.|.++         +-.|+.|+
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih-----------------t~~aHs~siSDf---------Dv~GNlLi  231 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH-----------------TFDAHSGSISDF---------DVQGNLLI  231 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCceee-----------------eeeccccceeee---------eccCCeEE
Confidence            554543  57889999999999999998653321                 223455566555         44788999


Q ss_pred             EecC---------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEecCCeEEEEEccCCCCceeee
Q 023672          143 STTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAGYNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       143 s~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~~~~~  211 (279)
                      +|+.         |..|+|||++.-+.+..+..+..      ..-+.|+|.-  +.++++..|...+-|..+-+.+....
T Consensus       232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~  305 (1118)
T KOG1275|consen  232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV  305 (1118)
T ss_pred             EeecccccccccccchhhhhhhhhhhccCCcccccC------chhhhhcccccceEEEEecccceeeccccccCCCccce
Confidence            8865         56789999998877776666553      2457888873  34446689999999944322222222


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      ..+    ......+..+++|+ +++.|+.|..+|.|.+|--
T Consensus       306 ~~v----~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  306 KMV----NPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eEE----ccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence            122    22244599999999 9999999999999999973

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.69  E-value=7.3e-08  Score=86.72  Aligned_cols=151  Identities=17%  Similarity=0.304  Sum_probs=105.9

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ..|+.+.|+.+|+.+..+..||.+.+|........                  -..-|.....++.|-         +..
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~------------------s~qchnk~~~Df~Fi---------~s~ 2304 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT------------------SWQCHNKALSDFRFI---------GSL 2304 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCCccee------------------ccccCCccccceeee---------ehh
Confidence            77899999999999999999999999998732110                  112234455566552         124


Q ss_pred             EEEe---cCCCcEEEEECCCCeeeE-EEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672          141 FAST---TRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       141 l~s~---~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      ++++   +.++.+.+||..-..... .-..|..     .++++++-|..+.+++| .+|.|++||++..    +....+ 
T Consensus      2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~-----gaT~l~~~P~~qllisggr~G~v~l~D~rqr----ql~h~~- 2374 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG-----GATVLAYAPKHQLLISGGRKGEVCLFDIRQR----QLRHTF- 2374 (2439)
T ss_pred             hhccccCCCCCcccchhcccCcccceeeeecCC-----CceEEEEcCcceEEEecCCcCcEEEeehHHH----HHHHHh-
Confidence            5554   456789999975432211 1144444     88999999999999976 9999999999972    111122 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                              +.    +.  ...++++|+..|.|+||++..-.++.+++
T Consensus      2375 --------~~----~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 --------QA----LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             --------hh----hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence                    11    32  35689999999999999999887777665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.8e-07  Score=67.98  Aligned_cols=82  Identities=23%  Similarity=0.437  Sum_probs=64.8

Q ss_pred             eeecCCCceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  191 (279)
                      +...++..|.+++|       +|..+ ++..++.+.+|+|.|+++...+..+..+.      .+++++|.-+. ++|++|
T Consensus       188 ~lp~~g~~Irdlaf-------Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAF-------SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             cccccchhhhhhcc-------CccccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEe
Confidence            33445556777665       55554 78899999999999999999888888775      89999999876 556689


Q ss_pred             -cCCeEEEEEccCCCCce
Q 023672          192 -YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~  208 (279)
                       ..|.|.+||++.+..++
T Consensus       255 l~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             ccCceEEEEEccCCCchH
Confidence             99999999999864443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.65  E-value=1.1e-07  Score=78.58  Aligned_cols=184  Identities=11%  Similarity=0.130  Sum_probs=113.6

Q ss_pred             ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.||..+|+.+-|+|.. ..|++++.|-.+..||++....               +.......+ .....+.|+-.   
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------------p~ys~~~w~-s~asqVkwnyk---  169 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------------PFYSTSSWR-SAASQVKWNYK---  169 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------------ceeeeeccc-ccCceeeeccc---
Confidence            577999999999999954 5889999999999999985421               111122222 23445666322   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCC--CCEEEEecCCeEEEEEccCCCCceee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAGYNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~d~~i~~~d~~~~~~~~~~  210 (279)
                         ++ .+.+.+..+.|++||++.| .++..++.+..     .|+.+.|..-  +..+.++.|++|+.||........+.
T Consensus       170 ---~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-----~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  170 ---DP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-----SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             ---Cc-chhhhccCCceEEEeccCCCcceEEecccce-----eeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence               33 3444556778999999876 56677776554     8888888764  23333559999999999864332222


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeC----------CCcEEEEecCC-CeEEEEEeecCCCEEEEEE
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDN-MELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~----------dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~  273 (279)
                      ..       ....+|..-++-|.+..+.+.-..          +.....|+..+ ..++.++.+|.+.|....|
T Consensus       241 ~v-------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW  307 (1081)
T KOG0309|consen  241 TV-------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW  307 (1081)
T ss_pred             ec-------cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence            11       223456666666633333332221          22223344433 3578999999886654433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.64  E-value=4.7e-07  Score=65.75  Aligned_cols=75  Identities=13%  Similarity=0.312  Sum_probs=59.1

Q ss_pred             CceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      +.|.+++-+|. ...+++|+.||.+.+||.+....                ...+...|..+++.+.|+|.      ++.
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----------------p~S~l~ahk~~i~eV~FHpk------~p~  237 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----------------PVSLLKAHKAEIWEVHFHPK------NPE  237 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccc----------------hHHHHHHhhhhhhheeccCC------Cch
Confidence            34999999994 45677899999999999986522                11244556778999999887      556


Q ss_pred             EEEEecCCCcEEEEECCC
Q 023672          140 VFASTTRDHPIHLWDATT  157 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~  157 (279)
                      .|++++.||.+-.||..+
T Consensus       238 ~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             heeEecCCCcEEEEcCCC
Confidence            899999999999999765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=5.2e-06  Score=66.74  Aligned_cols=161  Identities=12%  Similarity=0.159  Sum_probs=102.8

Q ss_pred             EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  143 (279)
                      +-+.|||.|.+|+|-..-| |.+|--..-..                  ...+.|. .|.-+       .|||+.++|++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r------------------~~RF~Hp-~Vq~i-------dfSP~EkYLVT  266 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR------------------IQRFYHP-GVQFI-------DFSPNEKYLVT  266 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHH------------------HHhccCC-Cceee-------ecCCccceEEE
Confidence            5689999999999988766 78885443211                  1122232 23333       45788888887


Q ss_pred             ecC-----------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          144 TTR-----------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       144 ~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      =+.           ...+.|||+++|...+.+........  .-.-..||.|++++|.-....|.||+...-    ..  
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP~frWS~DdKy~Arm~~~sisIyEtpsf----~l--  338 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWPIFRWSHDDKYFARMTGNSISIYETPSF----ML--  338 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccceEEeccCCceeEEeccceEEEEecCce----ee--
Confidence            542           25799999999999988887532111  112368999999999655578899887641    11  


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCeEEEEEe
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYVLH  262 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~  262 (279)
                        .....-.-..|....|+| .+.+||-=...     ..+.|-.+.+++.+.+..
T Consensus       339 --ld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n  390 (698)
T KOG2314|consen  339 --LDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN  390 (698)
T ss_pred             --ecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence              111122234688899999 78888754322     236666666666555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=4.2e-06  Score=64.63  Aligned_cols=80  Identities=13%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             ccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+|...|..++|+|..+ ++..++.+.+|+|.|+++....                  ........+++++|.-+   
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v------------------ssy~a~~~~wSC~wDld---  246 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV------------------SSYIAYNQIWSCCWDLD---  246 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceee------------------eheeccCCceeeeeccC---
Confidence            6778889999999999777 7789999999999999864321                  11222368999999433   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCC
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTG  158 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~  158 (279)
                         +.++|+.|...|.|.+||++..
T Consensus       247 ---e~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  247 ---ERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ---CcceeEEeccCceEEEEEccCC
Confidence               4668899999999999999864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.56  E-value=4.8e-06  Score=66.17  Aligned_cols=184  Identities=11%  Similarity=0.120  Sum_probs=115.6

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ..-++..++|||.|.+|++.... -|.+|.-.....                  .....+ ..|..+.       |+|++
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~------------------l~~~~~-~~V~~~~-------fSP~~   83 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAK------------------LVRFRH-PDVKYLD-------FSPNE   83 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhh------------------eeeeec-CCceecc-------cCccc
Confidence            44568899999999999987765 488898764321                  122222 2455554       47788


Q ss_pred             cEEEEecCC---------------CcEEEEECCCCeeeEEEeccCcccccccee-eEEECCCCCEEEEecCCeEEEEEcc
Q 023672          139 CVFASTTRD---------------HPIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVH  202 (279)
Q Consensus       139 ~~l~s~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~~~d~~  202 (279)
                      .+|.+=+..               ..+.+||+.++..+..+.......   ..+ -+.|+-+.++++--....++++++ 
T Consensus        84 kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-  159 (561)
T COG5354          84 KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFSIDDKYVARVVGSSLYIHEI-  159 (561)
T ss_pred             ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeeeecchhhhhhccCeEEEEec-
Confidence            888876543               359999999999998888765421   123 578888888877335667999997 


Q ss_pred             CCCCceeeeeecccccCCCCCceEEEEEccC-CCcEEEE-----EeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAI-----GSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ++.-.......+      ....+....|+|. ++..|+.     .+.++.+++|.+..+..+.+-.-..-.=..+.|++.
T Consensus       160 t~n~~~~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~  233 (561)
T COG5354         160 TDNIEEHPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL  233 (561)
T ss_pred             CCccccCchhhc------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence            322111111111      1246888899993 2333443     356778999999877655433222211234777777


Q ss_pred             CCC
Q 023672          277 AYT  279 (279)
Q Consensus       277 g~~  279 (279)
                      |.|
T Consensus       234 g~~  236 (561)
T COG5354         234 GKY  236 (561)
T ss_pred             Cce
Confidence            654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=2.8e-06  Score=68.89  Aligned_cols=76  Identities=12%  Similarity=0.195  Sum_probs=60.5

Q ss_pred             CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      ......|.|++++|+...|+.|+.||+|.+||...+..                          ......+.|..++++|
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------------------------~~~ka~~~P~~iaWHp  309 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------------------------LLAKAEFIPTLIAWHP  309 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--------------------------eeeeecccceEEEEcC
Confidence            35677899999999999999999999999999875421                          1112234455566688


Q ss_pred             CCcEEEEecCCCcEEEEECCCC
Q 023672          137 TSCVFASTTRDHPIHLWDATTG  158 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~  158 (279)
                      +|.++++|+..|.+.+||+.-+
T Consensus       310 ~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  310 DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999999654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=3.4e-05  Score=67.81  Aligned_cols=113  Identities=17%  Similarity=0.250  Sum_probs=70.9

Q ss_pred             cccCCCCcEEEEe-----cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE----ecCCeEEEEEcc
Q 023672          132 SASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GYNKSVRVFDVH  202 (279)
Q Consensus       132 ~~~~~~~~~l~s~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~d~~i~~~d~~  202 (279)
                      +.|--||.++|+.     ..-+.|++||-+ |..-..-.....     .=.+++|-|.|..+++    +.|+.|.+|.-+
T Consensus       201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~-----l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG-----LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc-----cccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence            3456788888884     223789999976 443222111111     2247999999999984    256778888765


Q ss_pred             CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEE---EeCCCcEEEEecCCCe
Q 023672          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI---GSYSQTSAIYREDNME  256 (279)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~---~~~dg~i~~wd~~~~~  256 (279)
                      .- +.    ..+.-........+..++|+. ++.+|++   ......|++|-+.+-.
T Consensus       275 GL-~h----g~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  275 GL-RH----GEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             Cc-cc----cccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE
Confidence            31 11    111111122233489999999 8999988   5555569999887653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.49  E-value=3.8e-08  Score=79.88  Aligned_cols=172  Identities=15%  Similarity=0.229  Sum_probs=109.7

Q ss_pred             eccCCCCCceEEEEEcc-CCCeEEEee----CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672           54 RTSSIPNNFLKGIKWSP-DGSSFLTSS----EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~-~~~~l~t~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (279)
                      ....+|....++++|++ |.+.||.|-    .|-.+.|||+.++-...... ..           +.........++|| 
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-~~-----------fs~~~l~gqns~cw-  162 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-PL-----------FSSSTLDGQNSVCW-  162 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-cc-----------cccccccCcccccc-
Confidence            36677888999999998 667787764    36779999998753211000 00           11112233446777 


Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEecCCeEEEEE-ccCCCC
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFD-VHRPGR  206 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~~~d-~~~~~~  206 (279)
                            ..+.+.+.+|.....+.++|++.... ........     .+..+...| .+.++++..|+.|.+|| .+.-..
T Consensus       163 ------lrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk-----~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnien  230 (783)
T KOG1008|consen  163 ------LRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTK-----YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIEN  230 (783)
T ss_pred             ------ccCcchhhcccccchhhhhhhhhhhh-hhhhhhhh-----hcccceecCCCCCceeccccCceeeccchhhhcc
Confidence                  45778899999999999999984322 11112222     456788888 67787777899999999 444222


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYRED  253 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~  253 (279)
                      ++..+   ..........+..++|.|.....+++... .++|+++|+.
T Consensus       231 pl~~i---~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  231 PLQII---LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHHHH---hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            22222   11111122358899999965556666654 4679999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.48  E-value=4e-05  Score=62.40  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=56.0

Q ss_pred             ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .|.+++++|+...++.| .||.|.+||...+-...          ....-.++.++|+| +|.++++|+..|.+.+||+.
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence            78899999999888866 99999999998731111          11233578899999 99999999999999999985


Q ss_pred             C
Q 023672          254 N  254 (279)
Q Consensus       254 ~  254 (279)
                      -
T Consensus       330 L  330 (545)
T PF11768_consen  330 L  330 (545)
T ss_pred             c
Confidence            4

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.47  E-value=4.4e-05  Score=68.09  Aligned_cols=183  Identities=15%  Similarity=0.166  Sum_probs=115.9

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEE----eCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIF----SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+...                  .+...-...|.+.+|       
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~------------------E~VG~vd~GI~a~~W-------  128 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI------------------EIVGSVDSGILAASW-------  128 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee------------------EEEEEEcCcEEEEEE-------
Confidence            44679999999999999999999999999    4443211                  122233356888888       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEe----------------------ccCccc---------------------
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYR----------------------AYDAVD---------------------  171 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~----------------------~~~~~~---------------------  171 (279)
                      |||+..|+..+.+++|.+..- +..++....                      .++..+                     
T Consensus       129 SPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s  207 (928)
T PF04762_consen  129 SPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS  207 (928)
T ss_pred             CCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc
Confidence            778999999988888876542 222211110                      000000                     


Q ss_pred             cccceeeEEECCCCCEEEEe-c---C---CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-
Q 023672          172 EITAAFSVAFNPTGTKIFAG-Y---N---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-  243 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-  243 (279)
                      ....-..|+|-.||.+++++ .   .   ..++||+-..     ....+.    +.-.+--.+++|.| .|.++|+... 
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-----~L~stS----E~v~gLe~~l~WrP-sG~lIA~~q~~  277 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-----ELQSTS----EPVDGLEGALSWRP-SGNLIASSQRL  277 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-----eEEecc----ccCCCccCCccCCC-CCCEEEEEEEc
Confidence            00123478999999999943 2   2   5789998872     111111    12223344789999 9999998764 


Q ss_pred             --CCcEEEEecCCCeEEEEEee----cCCCEEEEEEccCCC
Q 023672          244 --SQTSAIYREDNMELLYVLHG----QEGGVTHVSKLSSAY  278 (279)
Q Consensus       244 --dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~spdg~  278 (279)
                        ...|.+|. ++|-....|.-    ....|..|+|++|+.
T Consensus       278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence              33466676 56654444432    345899999999974

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.45  E-value=1.7e-05  Score=68.32  Aligned_cols=132  Identities=14%  Similarity=0.168  Sum_probs=89.2

Q ss_pred             CCcEEEEe-cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-------CEEEEe-cCCeEEEEEccCCCCc
Q 023672          137 TSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-------TKIFAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       137 ~~~~l~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~-~d~~i~~~d~~~~~~~  207 (279)
                      +..+|+.. .....|+-.|++.|+.+.....+...    +|  ..|.|+.       ...+.| .+..+..||.|-.+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~----~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k  565 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI----PV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK  565 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc----ce--eEecccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence            34444443 34678999999999999999987741    23  3444532       234456 8899999999975422


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..  ...... -.......|++-+. +| +||.|+.+|.||+||--..+....|++...+|.+|..+.||+|
T Consensus       566 ~v--~~~~k~-Y~~~~~Fs~~aTt~-~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  566 LV--DSQSKQ-YSSKNNFSCFATTE-DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             ee--eccccc-cccCCCceEEEecC-Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence            21  111001 12344567777766 44 7999999999999995433444567777889999999999986

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.44  E-value=0.00028  Score=52.53  Aligned_cols=153  Identities=14%  Similarity=0.219  Sum_probs=86.3

Q ss_pred             EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC-ceEEEEeeCcccccCCCCcEEEEe
Q 023672           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDPTSCVFAST  144 (279)
Q Consensus        66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~s~  144 (279)
                      ++.+.+|+.||..- |..|.|-..+..-. .....+.            ...... .=..++|       |||+.+||.+
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~-si~~kcq------------VpkD~~PQWRkl~W-------SpD~tlLa~a   61 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFS-SIIGKCQ------------VPKDPNPQWRKLAW-------SPDCTLLAYA   61 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCch-heeEEEe------------cCCCCCchheEEEE-------CCCCcEEEEE
Confidence            56678898777554 66777766543211 0001111            011111 1233444       8899999999


Q ss_pred             cCCCcEEEEECCCCeeeEEEeccCc--cccccceeeEEECCCC-------CEEEEecCCeEEEEEccCC-CCceeeeeec
Q 023672          145 TRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTG-------TKIFAGYNKSVRVFDVHRP-GRDFEKYSTL  214 (279)
Q Consensus       145 ~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-------~~l~~~~d~~i~~~d~~~~-~~~~~~~~~~  214 (279)
                      ...|+|+++|+.... +..+.....  ......|..+.|-+-.       .+|+...+|.++=|-+..+ .+.+.....+
T Consensus        62 ~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf  140 (282)
T PF15492_consen   62 ESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF  140 (282)
T ss_pred             cCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE
Confidence            999999999997543 334333221  1112356677775432       3445668888887776331 2333333333


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      .-. ..+...|.++.++| ..++|+.|+
T Consensus       141 sf~-~~yp~Gi~~~vy~p-~h~LLlVgG  166 (282)
T PF15492_consen  141 SFS-SHYPHGINSAVYHP-KHRLLLVGG  166 (282)
T ss_pred             Eec-ccCCCceeEEEEcC-CCCEEEEec
Confidence            211 23466899999999 767766664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.41  E-value=0.00037  Score=52.84  Aligned_cols=174  Identities=20%  Similarity=0.226  Sum_probs=99.3

Q ss_pred             EEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC-CCCcEEE
Q 023672           65 GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFA  142 (279)
Q Consensus        65 ~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~  142 (279)
                      ++.|.+ ++.++++-...+.|..|+..++...                   ...... ...+.       +. +++.++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------------~~~~~~-~~G~~-------~~~~~g~l~-   55 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------------VIDLPG-PNGMA-------FDRPDGRLY-   55 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------------EEESSS-EEEEE-------EECTTSEEE-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------------EEecCC-CceEE-------EEccCCEEE-
Confidence            578888 6777777777899999999865331                   111111 22332       34 455444 


Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC--------CeEEEEEccCCCCceeeeee
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN--------KSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d--------~~i~~~d~~~~~~~~~~~~~  213 (279)
                      .+...+ +.++|+.+++................++.+++.|+|++.++. ..        +.|..++..  +. ....  
T Consensus        56 v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~--  129 (246)
T PF08450_consen   56 VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVV--  129 (246)
T ss_dssp             EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEE--
T ss_pred             EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEE--
Confidence            444444 556699998765555442221122378899999999977753 22        345555555  11 1111  


Q ss_pred             cccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCC-e-E--EEEE---eecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNM-E-L--LYVL---HGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~-~-~--~~~~---~~~~~~v~~~~~spdg~  278 (279)
                      .     ..-...+.++|+| ++. ++++-+..+.|..+++... . .  ...+   ....+..-++++..+|+
T Consensus       130 ~-----~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  130 A-----DGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             E-----EEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             e-----cCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence            1     1123478999999 665 5556777888999998632 1 1  1222   22222367788887775

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.40  E-value=6.6e-05  Score=57.23  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=93.8

Q ss_pred             ccCC-CCcEEEEecCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-----CCeEEEEEccCC
Q 023672          133 ASDP-TSCVFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-----NKSVRVFDVHRP  204 (279)
Q Consensus       133 ~~~~-~~~~l~s~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----d~~i~~~d~~~~  204 (279)
                      +.+| ....++.+-.-|+ ..+||.++++....+.......   .--.-.|++||++|++. .     .|.|-|||....
T Consensus        11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH---FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen   11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH---FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE---EecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3355 4556777777765 5689999999888776654422   12257899999999975 3     478999999842


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe------------------CCCcEEEEecCCCeEEEE--E--e
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS------------------YSQTSAIYREDNMELLYV--L--H  262 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~------------------~dg~i~~wd~~~~~~~~~--~--~  262 (279)
                         +..+.++    ..|.-....+.+.| ++..|+.+.                  .+-++.+-|..+|+++..  +  .
T Consensus        88 ---~~ri~E~----~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   88 ---YRRIGEF----PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             ---cEEEeEe----cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence               2333333    45555567788999 776666552                  123566778889998876  4  2


Q ss_pred             ecCCCEEEEEEccCCC
Q 023672          263 GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       263 ~~~~~v~~~~~spdg~  278 (279)
                      .|.-.|+.|++.+||.
T Consensus       160 ~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGT  175 (305)
T ss_pred             ccccceeeEEecCCCc
Confidence            3667899999999985

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.40  E-value=5.4e-05  Score=60.44  Aligned_cols=175  Identities=15%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             CceEEEEEccCC--CeEE-----EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           61 NFLKGIKWSPDG--SSFL-----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        61 ~~v~~~~~~~~~--~~l~-----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..|....|+|.+  ..||     ....++.++||.+..+......+...                 ..-..+.|      
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-----------------~~~~qLkW------  230 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-----------------VSGVQLKW------  230 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-----------------ecccEEEE------
Confidence            457778888853  3344     24567888888887433211110000                 01122334      


Q ss_pred             cCCCCcEEEEec-----------CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEEE
Q 023672          134 SDPTSCVFASTT-----------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVF  199 (279)
Q Consensus       134 ~~~~~~~l~s~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~~  199 (279)
                       ++.|.+++.--           ....+.|+++....+.... .-..     +|...+|.|.++.++  +| .+..+.++
T Consensus       231 -~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~-----pVhdf~W~p~S~~F~vi~g~~pa~~s~~  303 (561)
T COG5354         231 -QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD-----PVHDFTWEPLSSRFAVISGYMPASVSVF  303 (561)
T ss_pred             -ecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccc-----cceeeeecccCCceeEEecccccceeec
Confidence             44455443321           1245778887643322222 2222     899999999987776  56 88999999


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeE-EEEEeecCCCEEEEEEcc
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL-LYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~sp  275 (279)
                      |++.+     ....      .....-..+-|+| .+++++.++-|   |.|-+||....-. +..+.+.+  .+-+.|+|
T Consensus       304 ~lr~N-----l~~~------~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp  369 (561)
T COG5354         304 DLRGN-----LRFY------FPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP  369 (561)
T ss_pred             ccccc-----eEEe------cCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccC
Confidence            99973     1111      1223345678999 88888887655   4699999876543 33666543  45678999


Q ss_pred             CCCC
Q 023672          276 SAYT  279 (279)
Q Consensus       276 dg~~  279 (279)
                      ||+|
T Consensus       370 d~qF  373 (561)
T COG5354         370 DGQF  373 (561)
T ss_pred             CceE
Confidence            9975

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.37  E-value=4.4e-05  Score=63.65  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             CCCCcEEEEecCCCcEEEEECCC-----CeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672          135 DPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~  207 (279)
                      .++|++...  .++.|.+.|.++     .+.+..+....      .+..+.++|||++++ ++ .+.++.|+|+.+....
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK------sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK------NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC------CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence            445555544  256799999988     35555565554      678999999999998 55 8999999999873211


Q ss_pred             e----eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          208 F----EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       208 ~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      +    +....+.....- .......+|.+ +|..+.+--.|..|..||+.+
T Consensus       357 ~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence            1    111111111111 22345678999 788888888899999999876

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.36  E-value=3.2e-05  Score=62.81  Aligned_cols=179  Identities=17%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             CCceEEEEEccCCCeEEEe---eCC-CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           60 NNFLKGIKWSPDGSSFLTS---SED-KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~---~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ...+..-+|+|+++.++..   ... ..+.+++++++....                         +..........+|+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-------------------------i~~~~g~~~~P~fs  246 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-------------------------ILNFNGNNGAPAFS  246 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-------------------------eeccCCccCCccCC
Confidence            3456667888888866533   222 357888887654321                         11111111223679


Q ss_pred             CCCcEEEEe-cCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceee
Q 023672          136 PTSCVFAST-TRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       136 ~~~~~l~s~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                      |||+.|+.+ ..|+  .|.++|+.+++..+ +.....     .-..-.|+|+|+.++ ++ ..|.-.||-....+.....
T Consensus       247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r  320 (425)
T COG0823         247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-----INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR  320 (425)
T ss_pred             CCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-----cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence            999887766 4455  46777888776433 332222     223678999999988 55 6665555544433332222


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCc--EEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQT--SAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      + +.    .  .+.-..-.|+| +|.+|+..+. +|.  |.+.|+.++.....+. .........|.|+|+
T Consensus       321 i-T~----~--~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~  382 (425)
T COG0823         321 L-TF----S--GGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR  382 (425)
T ss_pred             e-ec----c--CCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence            2 11    1  11122678999 7777776654 344  6777776665443333 222233444555553

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=1.4e-05  Score=66.99  Aligned_cols=123  Identities=13%  Similarity=0.124  Sum_probs=95.1

Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe----c------CCeEEEEEccCCCCcee
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----Y------NKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~------d~~i~~~d~~~~~~~~~  209 (279)
                      ++|.|...|+|.++|+.++.....+..|..     .|.++.|-....++..+    .      -+.+.+-|++++-.   
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~-----~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls---  510 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTS-----LVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS---  510 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhccccc-----ceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc---
Confidence            578899999999999999998888888887     89999998887776522    1      24577889998421   


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC-EEEEEEc
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVSKL  274 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s  274 (279)
                        ..+....+....+|..+..|. .+.+|+..-.+.-+.+||+++..++..... .-+ ++.+.|+
T Consensus       511 --k~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS~-a~P~it~leWs  572 (1062)
T KOG1912|consen  511 --KRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMSL-ALPLITVLEWS  572 (1062)
T ss_pred             --cccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHhh-cCCcEEEEeec
Confidence              122222245567899999999 999999999999999999998877654442 334 8888888

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.35  E-value=1.6e-07  Score=76.40  Aligned_cols=184  Identities=15%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             CCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           60 NNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        60 ~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ...+.|+++.-+.  ..+++|..+|.|.+-.+....-.               ...+...+....++++|++.      |
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------s~E~tp~~ar~Ct~lAwneL------D  114 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------SAEVTPGYARPCTSLAWNEL------D  114 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------cceecccccccccccccccc------c
Confidence            3557888886643  47789999999999887743211               11233445567778888553      5


Q ss_pred             CcEEEEec----CCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          138 SCVFASTT----RDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       138 ~~~l~s~~----~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                      .++||.|-    .|..+.|||+.++  .+.........  ......+++|..+.+++.+| ....+.++|++........
T Consensus       115 tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s  192 (783)
T KOG1008|consen  115 TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS  192 (783)
T ss_pred             HHHHHhhhhhhcccCCccceecccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh
Confidence            66777763    3668999999887  22222211111  11145588999888888888 7789999999952111111


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe-cCCCe-EEEEEeecCC----CEEEEEEccC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME-LLYVLHGQEG----GVTHVSKLSS  276 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd-~~~~~-~~~~~~~~~~----~v~~~~~spd  276 (279)
                               -.+..+..+..+|-.+.++++-. ||.|.+|| .++-+ ++..+.....    .+..++|+|.
T Consensus       193 ---------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  193 ---------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             ---------hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence                     11224566777776667777665 99999999 44433 2222221122    3788888884

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.35  E-value=0.00018  Score=58.30  Aligned_cols=110  Identities=13%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +..++.++.++.+..+|..+++.+.......       ......  .+..++ ...+|.+..+|..++. .......+  
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-------~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~--  308 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS-------YQGPAV--DDNRLYVTDADGVVVALDRRSGS-ELWKNDEL--  308 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCC-------ccCceE--eCCEEEEECCCCeEEEEECCCCc-EEEccccc--
Confidence            4467778889999999999998776655221       112222  344555 4489999999998742 21111011  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  266 (279)
                        ..  ....+...   .+..|++++.+|.|+++|..+++.+..++.+..
T Consensus       309 --~~--~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       309 --KY--RQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             --cC--CccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence              11  11122222   245788889999999999999999988876553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00011  Score=61.97  Aligned_cols=166  Identities=14%  Similarity=0.096  Sum_probs=99.5

Q ss_pred             ccCCCCCceEEEEEcc-------------CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCc
Q 023672           55 TSSIPNNFLKGIKWSP-------------DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES  121 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-------------~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (279)
                      .+..|.+.|.-..+.-             +|.+++|||.||+|.|-.+-+....                  ....-..+
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~------------------~~~df~rp  114 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI------------------TQYDFKRP  114 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc------------------eeEecCCc
Confidence            4555666655555433             4999999999999999888754321                  11222357


Q ss_pred             eEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-CeeeE-EEeccCccccccceeeEEECCCCCEEEEecCCeEEEE
Q 023672          122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF  199 (279)
Q Consensus       122 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~  199 (279)
                      +.+++++|+-.  -...+.+++|+.-| +.++.-+= |.... .+....     ++|.++.|.  |++++-..|-.|++|
T Consensus       115 iksial~Pd~~--~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e-----G~I~~i~W~--g~lIAWand~Gv~vy  184 (846)
T KOG2066|consen  115 IKSIALHPDFS--RQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE-----GPIHSIKWR--GNLIAWANDDGVKVY  184 (846)
T ss_pred             ceeEEeccchh--hhhhhheeecCcce-EEEehhhhhcCccceeeecCc-----cceEEEEec--CcEEEEecCCCcEEE
Confidence            77787766521  12356788999888 76665321 11111 222222     289999996  678887888889999


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      |..+. +.+..+... ............+.|.+ +. .|+.|=. .+|+|..++
T Consensus       185 d~~~~-~~l~~i~~p-~~~~R~e~fpphl~W~~-~~-~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  185 DTPTR-QRLTNIPPP-SQSVRPELFPPHLHWQD-ED-RLVIGWG-DSVKICSIK  233 (846)
T ss_pred             ecccc-ceeeccCCC-CCCCCcccCCCceEecC-CC-eEEEecC-CeEEEEEEe
Confidence            99873 222111111 01112233456788987 44 4555543 458888776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.25  E-value=0.00013  Score=54.97  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=74.4

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccc
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ++..+++++.++.|..||..+|+.+..+.....      +...-...++..++...++.++.+|..++....+...... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC------GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc------ccceeeecccccccccceeeeEecccCCcceeeeeccccc-
Confidence            455777778999999999999999888887442      1111222344444455788999999888533222111110 


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                        .... ......... .+..++.+..++.|..+|+++|+.+.......
T Consensus       108 --~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  108 --PPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             --CTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             --cccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence              1111 122223333 35677778879999999999999988776643

...

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.24  E-value=2e-05  Score=58.52  Aligned_cols=170  Identities=15%  Similarity=0.138  Sum_probs=97.8

Q ss_pred             EEccCCCeEEEeeCC-----CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           67 KWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        67 ~~~~~~~~l~t~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .|||||.+|+..-.|     |.|-|||...+-                       .+.+........|+.+.+.+||+.+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-----------------------qrvgE~~t~GiGpHev~lm~DGrtl  176 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-----------------------QRVGEFSTHGIGPHEVTLMADGRTL  176 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----------------------ceecccccCCcCcceeEEecCCcEE
Confidence            589999988865443     779999988431                       1112222223344445567888888


Q ss_pred             EEecC------------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC----eEEE
Q 023672          142 ASTTR------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVRV  198 (279)
Q Consensus       142 ~s~~~------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~----~i~~  198 (279)
                      +.+..                  .-++.+.|..+|+.+.+...+... ....+..++..++|..++.+ ..|    .--+
T Consensus       177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l-~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL  255 (366)
T COG3490         177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL-RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL  255 (366)
T ss_pred             EEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh-hhcceeeeeeCCCCcEEEEEEeeCCCccCCcc
Confidence            77642                  123555565666655444333211 12268889999999888743 222    2222


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV  260 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~  260 (279)
                      .-...++++++.+.........-...|-+++.+..++-..+|.-..+...+||..+|..+..
T Consensus       256 vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         256 VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            22223344444443322222333456888999884555555555566688999999987643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.23  E-value=4.8e-05  Score=65.01  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=88.0

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec---------CCeEEEEEccCCCC
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---------NKSVRVFDVHRPGR  206 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---------d~~i~~~d~~~~~~  206 (279)
                      +++++.+|...|+|.+-|.++.+.+.++..|..     .+.  +|+-.|+.|+ +|.         |..|+|||+|+-  
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-----siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm--  256 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-----SIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM--  256 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeecccc-----cee--eeeccCCeEEEeecccccccccccchhhhhhhhhh--
Confidence            778999999999999999999999999999886     554  5566677777 552         567999999983  


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eE---EEEEeecCCCEEEEEEccCCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-EL---LYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~---~~~~~~~~~~v~~~~~spdg~  278 (279)
                        +.+..+    .-+.+ ..-+.|.|.=...++.++..|...+-|..+. .+   +..+......+.++.+|++|.
T Consensus       257 --ral~PI----~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~  325 (1118)
T KOG1275|consen  257 --RALSPI----QFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD  325 (1118)
T ss_pred             --hccCCc----ccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc
Confidence              222122    11122 2456788855667888888999999884322 22   222333344588899998875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.2e-05  Score=63.18  Aligned_cols=182  Identities=12%  Similarity=0.059  Sum_probs=115.3

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      -...|-+.|.+++.+-++..++|++. |..++++|+++-....-.....                  .-..++|...  .
T Consensus        48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~------------------lPg~a~wv~s--k  107 (558)
T KOG0882|consen   48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD------------------LPGFAEWVTS--K  107 (558)
T ss_pred             hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc------------------CCCceEEecC--C
Confidence            34567788889999999999999777 9999999998643321110000                  0001111000  0


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                      -.+-...-++.-.++.+.++|-....+  ...-..|..     +|.++.+.+.+..+.+. ..|.|.-|....+-+..+.
T Consensus       108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-----PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~  182 (558)
T KOG0882|consen  108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-----PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT  182 (558)
T ss_pred             CCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-----ceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence            001112334455688999999875432  222233443     89999999999988877 7899999988731110000


Q ss_pred             --e-----eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          211 --Y-----STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       211 --~-----~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                        .     .+....+........++.|+| ++..+.+-+.|..|++++.+++++++.+.
T Consensus       183 ~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  183 NLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhh
Confidence              0     011111123355678999999 88999999999999999999998766554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00019  Score=61.05  Aligned_cols=182  Identities=15%  Similarity=0.137  Sum_probs=105.6

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .|.|  |++.+..++.|+.+|.|.+++-.-.-. .                ...... ..+...-|      ......+|
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~-~----------------~fqa~~-~siv~~L~------~~~~~~~L   80 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLI-R----------------GFQAYE-QSIVQFLY------ILNKQNFL   80 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecccceee-e----------------hheecc-hhhhhHhh------cccCceEE
Confidence            4544  678888999999999988887541100 0                011111 11111111      11223466


Q ss_pred             EEecCCC-----cEEEEECCCC------eeeEEEe--ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC-CC
Q 023672          142 ASTTRDH-----PIHLWDATTG------LLRCTYR--AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP-GR  206 (279)
Q Consensus       142 ~s~~~d~-----~i~i~d~~~~------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~-~~  206 (279)
                      ++.+.|+     .|++|+++..      ++....+  .+..+....++.+++.+.+-+.+++| .+|.|..+.-+-. .+
T Consensus        81 ~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr  160 (933)
T KOG2114|consen   81 FSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR  160 (933)
T ss_pred             EEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence            6666554     4899999743      2231112  21222234478899999998899999 9999998854321 11


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEeCCCcEEEEecCCCeE-EEEEeecCCCEEEEEEccC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~spd  276 (279)
                      ..+.  .+.   .....+|+.+.+.. ++.. ++++. -..|.+|.+....+ +..+..|..++.+-+|++.
T Consensus       161 gsr~--~~~---~~~~~pITgL~~~~-d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~  225 (933)
T KOG2114|consen  161 GSRQ--DYS---HRGKEPITGLALRS-DGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG  225 (933)
T ss_pred             ccce--eee---ccCCCCceeeEEec-CCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCC
Confidence            1111  111   23357899999988 5554 34333 35689999874443 4457777778888887763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.8e-05  Score=59.91  Aligned_cols=188  Identities=11%  Similarity=0.029  Sum_probs=118.0

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      -|++.|+-+.-+ ..+++.+++.||.++.|--..-..      ..       ++. ....|-..+.++       +.+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------vE-------fVK-hFraHL~~I~sl-------~~S~d   64 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------VE-------FVK-HFRAHLGVILSL-------AVSYD   64 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------ee-------ehh-hhHHHHHHHHhh-------hcccc
Confidence            377777766544 457899999999999997653100      00       000 001111223333       44778


Q ss_pred             CcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe--cCCeEEEEEccCCCCceeeee
Q 023672          138 SCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG--YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       138 ~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~--~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      +..+.+.+. |..++++|+++-....-++...-++   .+ ++..++..  ..++++  .++.+.++|-+....+.    
T Consensus        65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg---~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~----  136 (558)
T KOG0882|consen   65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG---FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD----  136 (558)
T ss_pred             ceeEeeccCcccceeEEEeeccchhhhcccccCCC---ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc----
Confidence            888999777 9999999998766554444333211   11 22223321  245544  78999999988642211    


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC------CeE---------EEEEeecCCCEEEEEEccCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MEL---------LYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~------~~~---------~~~~~~~~~~v~~~~~spdg  277 (279)
                        .....-|..+|..+.+++ -+..+++....|.|.-|....      .+.         +..+........++.|+|+|
T Consensus       137 --~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g  213 (558)
T KOG0882|consen  137 --GYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG  213 (558)
T ss_pred             --ceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence              111257889999999999 889999999999999998762      111         22223334567899999998


Q ss_pred             C
Q 023672          278 Y  278 (279)
Q Consensus       278 ~  278 (279)
                      .
T Consensus       214 ~  214 (558)
T KOG0882|consen  214 A  214 (558)
T ss_pred             C
Confidence            5

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.19  E-value=0.0013  Score=49.58  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=85.9

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      ++..+++++.|+.+..+|..+++..........           ...........         ...+..++.+..++.|
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~---------~~~~~~~~~~~~~g~l  134 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-----------PPAGVRSSSSP---------AVDGDRLYVGTSSGKL  134 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-----------CTCSTB--SEE---------EEETTEEEEEETCSEE
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccc-----------cccccccccCc---------eEecCEEEEEeccCcE
Confidence            345566677788899999887765332100000           00000000011         1135677888889999


Q ss_pred             EEEECCCCeeeEEEeccCccccc-----cceeeEEECCCCCEEEEecCCe-EEEEEccCCCCceeeeeecccccCCCCCc
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEI-----TAAFSVAFNPTGTKIFAGYNKS-VRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (279)
                      ..+|+++|+.+............     ..+..-....++..+++..++. +.+ |+.++.    .....    .  ...
T Consensus       135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~----~~w~~----~--~~~  203 (238)
T PF13360_consen  135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE----KLWSK----P--ISG  203 (238)
T ss_dssp             EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE----EEEEE----C--SS-
T ss_pred             EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC----EEEEe----c--CCC
Confidence            99999999998888764321110     0111222223443344556775 555 998852    11111    1  111


Q ss_pred             eEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672          225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (279)
Q Consensus       225 v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~  259 (279)
                      +..+ ..+ .+..|+.++.++.|..||+++++.+-
T Consensus       204 ~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  204 IYSL-PSV-DGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ECEC-EEC-CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             ccCC-cee-eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            2221 345 55667777789999999999998764

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.0002  Score=58.31  Aligned_cols=193  Identities=17%  Similarity=0.174  Sum_probs=100.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEE--eCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIF--SLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .++.+++.+++.....    ...   +.-..-+|+|||++|+ +...||...||  |+..+....               
T Consensus       219 ~i~~~~l~~g~~~~i~----~~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---------------  276 (425)
T COG0823         219 RIYYLDLNTGKRPVIL----NFN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---------------  276 (425)
T ss_pred             eEEEEeccCCccceee----ccC---CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---------------
Confidence            4555566555543321    122   2344568999999876 55667765554  555433111               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCC-C--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                          ..+...+..   +   ..++|+|+.++..+.. |  .|.+++++.+..........      .-..-.|+|+|+++
T Consensus       277 ----Lt~~~gi~~---~---Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~------~~~~p~~SpdG~~i  340 (425)
T COG0823         277 ----LTNGFGINT---S---PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG------GNSNPVWSPDGDKI  340 (425)
T ss_pred             ----cccCCcccc---C---ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC------CCcCccCCCCCCEE
Confidence                111111111   2   2569999998877543 3  57777887666533322222      11267899999999


Q ss_pred             E-Ee-cCCe--EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEec-CCCeEEEEEe
Q 023672          189 F-AG-YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYRE-DNMELLYVLH  262 (279)
Q Consensus       189 ~-~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~-~~~~~~~~~~  262 (279)
                      + .+ .+|.  |.+.|+.++.. ..   .+     ........-.|.| ++..+...+..+ .=.++.+ .+++....+.
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~-~~---~l-----t~~~~~e~ps~~~-ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~  410 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGK-IR---IL-----TSTYLNESPSWAP-NGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP  410 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCc-EE---Ec-----cccccCCCCCcCC-CCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence            8 44 3455  66666665321 11   11     1122333457778 666555443322 2223322 3444444555


Q ss_pred             ecCCCEEEEEEcc
Q 023672          263 GQEGGVTHVSKLS  275 (279)
Q Consensus       263 ~~~~~v~~~~~sp  275 (279)
                      ...+.+...+|+|
T Consensus       411 ~~~~~~~~p~w~~  423 (425)
T COG0823         411 LADGDVRVPAWSP  423 (425)
T ss_pred             ccCcceecccccC
Confidence            4445666666655

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00013  Score=58.91  Aligned_cols=130  Identities=16%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC--EE-----EEe-cCCeEEEEEccCCCCceeee
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KI-----FAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l-----~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                      ++.++.....|+-.|++.|+.+.....+.      .|.-+.+.|+.+  .+     +.| .+..|.-||.|-.+..  .+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl  419 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KL  419 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--ee
Confidence            34455566778889999999999998877      466677777643  12     246 8899999999964432  11


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ......--.......|++-..  ..+++.||.+|.|++||--.......+++...+|..+..+.||++
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKw  485 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKW  485 (644)
T ss_pred             eeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcE
Confidence            111100011123455555544  458999999999999997333445567888889999999999974

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0012  Score=53.53  Aligned_cols=180  Identities=16%  Similarity=0.184  Sum_probs=114.9

Q ss_pred             EEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           64 KGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        64 ~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      .+++.++.+..++ +...+..|.+.|..+.....                         ...+...|..+++++++..++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-------------------------~~~vG~~P~~~~~~~~~~~vY  131 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-------------------------SIPVGLGPVGLAVDPDGKYVY  131 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceee-------------------------EeeeccCCceEEECCCCCEEE
Confidence            4677888777444 44456889999865432210                         011112566677899998877


Q ss_pred             EecC---CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecccc
Q 023672          143 STTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       143 s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      .+..   ++++.+.|..+++..........     + ..++++|+|..++..  .++.|.++|.... ....  ......
T Consensus       132 V~n~~~~~~~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~--~~~~~~  202 (381)
T COG3391         132 VANAGNGNNTVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVR--GSVGSL  202 (381)
T ss_pred             EEecccCCceEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceec--cccccc
Confidence            7755   68899999998888877554432     3 789999999987744  6899999997762 1110  010000


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~~  279 (279)
                       -.-......+.++| ++..+......   +.+...|..++..... +..-......+..+|+|++
T Consensus       203 -~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~  266 (381)
T COG3391         203 -VGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA  266 (381)
T ss_pred             -cccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence             12223456789999 66654444333   5899999998887655 2221114667889998863

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.12  E-value=0.00041  Score=56.77  Aligned_cols=165  Identities=10%  Similarity=0.131  Sum_probs=83.9

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .-....++++|+|+++++++ ||...||.....+.                      ...+.-..+.|       .+.+ 
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~----------------------k~~G~g~~~vw-------~~~n-   80 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN----------------------KAFGSGLSFVW-------SSRN-   80 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE----------------------EEEEE-SEEEE--------TSS-
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc----------------------cccCceeEEEE-------ecCc-
Confidence            34467899999999988855 78888887432211                      11123334455       4444 


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      .+|+-...++|.++.--+......+....      .+..|-.   |.+|....++.|.+||+.+.    +.+..+    .
T Consensus        81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~~~~i~~yDw~~~----~~i~~i----~  143 (443)
T PF04053_consen   81 RYAVLESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKSSDFICFYDWETG----KLIRRI----D  143 (443)
T ss_dssp             EEEEE-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEETTEEEEE-TTT------EEEEE----S
T ss_pred             cEEEEECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEECCCCEEEEEhhHc----ceeeEE----e
Confidence            46666668889986332333333444332      2233322   88888776779999999983    333333    1


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----------eEEEEEeecCCCEEEEEEccC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------ELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----------~~~~~~~~~~~~v~~~~~spd  276 (279)
                        -.+|..+.|++ ++.+++..+.+ .+.|++....           ..+..+..-...|.+..|.-|
T Consensus       144 --v~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  144 --VSAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             --S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             --cCCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence              12378999999 88888888755 5777664322           023333332445666666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=98.10  E-value=9.3e-06  Score=41.36  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEe
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS   88 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd   88 (279)
                      .+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4557888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=5.3e-05  Score=62.89  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      ++..+.+++.|+.-|.+.+|+-..++... ++...   ....+..+..+++..++++| ..|.|.++-+... .+.....
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~---~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~  115 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEG---ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDY  115 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhc-ccccC---ccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCccee
Confidence            36678899999999999999977665433 22211   11256677889988888876 8899999998873 3222221


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                       +......|...|++++|++ ++..+++|...|+|.+-.+.+
T Consensus       116 -~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 -VTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             -eccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence             1111245788999999999 999999999999998887766

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.08  E-value=0.00073  Score=43.22  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      +.|++|+.|..|++|+-.  +.+..+....      .|.+++-...+++.++-.+|+|-+|+-..     +. ...+   
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~------~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-----Rl-WRiK---   78 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITETD------KVTSLCSLGGGRFAYALANGTVGVYDRSQ-----RL-WRIK---   78 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEeccc------ceEEEEEcCCCEEEEEecCCEEEEEeCcc-----ee-eeec---
Confidence            579999999999999854  5666666555      67788877776655566999999998754     11 2221   


Q ss_pred             CCCCCceEEEEEcc---CCCcEEEEEeCCCcEE
Q 023672          219 EGQAGIMSAIAFSP---THTGMLAIGSYSQTSA  248 (279)
Q Consensus       219 ~~~~~~v~~~~~sp---~~~~~l~~~~~dg~i~  248 (279)
                      .  ...+.++++..   ++-.-|++|-.+|.|-
T Consensus        79 S--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   79 S--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            1  22355555543   2234688888888764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.08  E-value=0.001  Score=53.76  Aligned_cols=207  Identities=12%  Similarity=0.087  Sum_probs=103.2

Q ss_pred             eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672           49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (279)
Q Consensus        49 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (279)
                      .+.....+....+.|++++.|.=| ++|.|..+|.+.|.|++............         ..........++++.|.
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~---------~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE---------SFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------T-SS----EEEEEEE
T ss_pred             ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc---------cccccccccCeeEEEEE
Confidence            344444566668999999998544 99999999999999998765533211111         00112233456677775


Q ss_pred             CcccccCCCC---cEEEEecCCCcEEEEECC-C--CeeeEEEeccCccccccceeeEE-ECCC-C---------------
Q 023672          129 PHMSASDPTS---CVFASTTRDHPIHLWDAT-T--GLLRCTYRAYDAVDEITAAFSVA-FNPT-G---------------  185 (279)
Q Consensus       129 ~~~~~~~~~~---~~l~s~~~d~~i~i~d~~-~--~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~---------------  185 (279)
                      .-  ....|+   -.+++|...|.+.+|.+. .  +.....+.... .....+|..|. |+.+ |               
T Consensus       145 vm--~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  145 VM--TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EE--E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred             EE--ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence            42  222333   467888889999998774 1  21111111111 00111333333 2211 1               


Q ss_pred             -----CEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE-----ccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          186 -----TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF-----SPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       186 -----~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                           .++++..+..++++..-+.. ....  .+     ...-....+++     .. .+..|++-..+|.|++|.+...
T Consensus       222 g~~i~g~vVvvSe~~irv~~~~~~k-~~~K--~~-----~~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  222 GISIPGYVVVVSESDIRVFKPPKSK-GAHK--SF-----DDPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             T----EEEEEE-SSEEEEE-TT----EEEE--E------SS-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT-
T ss_pred             CCCcCcEEEEEcccceEEEeCCCCc-ccce--ee-----ccccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCc
Confidence                 14445578889999887631 1111  11     11112333444     23 5678888899999999999998


Q ss_pred             eEEEEEeecCC----CEEEEEEccCC
Q 023672          256 ELLYVLHGQEG----GVTHVSKLSSA  277 (279)
Q Consensus       256 ~~~~~~~~~~~----~v~~~~~spdg  277 (279)
                      +.+..+..+..    .+....++++|
T Consensus       293 kei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  293 KEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             -EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             hHhhcccCCCccccccccccEECCCC
Confidence            88877765321    23345556655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.00085  Score=57.51  Aligned_cols=212  Identities=13%  Similarity=0.127  Sum_probs=108.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc------------cccccCCC----CcccceeeecC
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------------ACSLAKDQ----DSYEASLVVTE  118 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~----~~~~~~~~~~~  118 (279)
                      ....|+.+|..+.|||+|..|+|+..-|.|.+|....-...+..+            .|..++..    -+.......+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD  175 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD  175 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence            566799999999999999999999999999999987322111000            00000000    00000000111


Q ss_pred             CCceE-EEEeeCcc------cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-
Q 023672          119 GESVY-DFCWFPHM------SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-  190 (279)
Q Consensus       119 ~~~v~-~~~~~~~~------~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-  190 (279)
                      ...+. -+.|.|..      -.-.|+|..++.+..+|+|...|- .|+.....+....      | .+-|.+...-+.+ 
T Consensus       176 e~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~------v-QmLf~~~~eai~~i  247 (1416)
T KOG3617|consen  176 ESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE------V-QMLFMGYCEAISII  247 (1416)
T ss_pred             hhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch------H-HHHHhcccceEEEE
Confidence            11111 12233221      123678888999999999987773 4555444443321      1 1223332211111 


Q ss_pred             ecCCeEEEEEccC----------------CCCce--------eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672          191 GYNKSVRVFDVHR----------------PGRDF--------EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (279)
Q Consensus       191 ~~d~~i~~~d~~~----------------~~~~~--------~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~  246 (279)
                      -.+-.+.++-...                +++..        ..+..-..-.......+.|+|++. -+..|+.|...|.
T Consensus       248 ~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gn  326 (1416)
T KOG3617|consen  248 IEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGN  326 (1416)
T ss_pred             eeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec-cceEEEecccCCc
Confidence            1222222221111                11100        000000000011245689999999 8889999999999


Q ss_pred             EEEEecC-C---CeE---EEEEee---cCCCEEEEEEcc
Q 023672          247 SAIYRED-N---MEL---LYVLHG---QEGGVTHVSKLS  275 (279)
Q Consensus       247 i~~wd~~-~---~~~---~~~~~~---~~~~v~~~~~sp  275 (279)
                      +.+|--- .   |.+   ...+.+   ..+.|+.+.|.|
T Consensus       327 v~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~  365 (1416)
T KOG3617|consen  327 VTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP  365 (1416)
T ss_pred             EEEeeecCccccCCCCcceEEecCchhhccceEEEEecc
Confidence            9999532 2   112   223332   346789999987

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.0012  Score=53.06  Aligned_cols=51  Identities=24%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG   93 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~   93 (279)
                      ..+++|+.++....       +......+....|+|+|+.++... ++.|.+++..++.
T Consensus        24 ~y~i~d~~~~~~~~-------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen   24 DYYIYDIETGEITP-------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             EEEEEETTTTEEEE-------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred             eEEEEecCCCceEE-------CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence            56788888876643       222256788999999999998776 5789999886653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.97  E-value=0.001  Score=42.63  Aligned_cols=99  Identities=22%  Similarity=0.342  Sum_probs=62.8

Q ss_pred             eEEEEEcc---CC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           63 LKGIKWSP---DG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        63 v~~~~~~~---~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      |++|++..   || +.|++||.|..|++|+-++-                    .........|..++..        .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------------------~~Ei~e~~~v~~L~~~--------~~   53 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------------------VAEITETDKVTSLCSL--------GG   53 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------------------EEEEecccceEEEEEc--------CC
Confidence            66777655   33 58999999999999987631                    1234455567776542        23


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC---CC-CEEEEe-cCCeEE
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP---TG-TKIFAG-YNKSVR  197 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~-~d~~i~  197 (279)
                      ..++.+..+|+|-+|+-.  ..+...+...      .+.++.+..   +| ..|++| .+|.|-
T Consensus        54 ~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~------~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   54 GRFAYALANGTVGVYDRS--QRLWRIKSKN------QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CEEEEEecCCEEEEEeCc--ceeeeeccCC------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            478889999999999853  2333333322      344554433   33 356677 888764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.96  E-value=0.00088  Score=54.30  Aligned_cols=151  Identities=11%  Similarity=0.061  Sum_probs=87.1

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      .+..+++++.+|.|.-+|..+++........                  ..+.   -.|     ..++..++.++.++.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~------------------~~~~---~~p-----~v~~~~v~v~~~~g~l  117 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLD------------------ERLS---GGV-----GADGGLVFVGTEKGEV  117 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCC------------------CCcc---cce-----EEcCCEEEEEcCCCEE
Confidence            3567888889999999999887653221111                  0000   001     1135577788889999


Q ss_pred             EEEECCCCeeeEEEeccCccccccceee-EEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEE
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA  229 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  229 (279)
                      ..+|..+|+.+........      +.+ ... .++..++...++.+..||.+++....+.. ...... .... ..+..
T Consensus       118 ~ald~~tG~~~W~~~~~~~------~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~-~~~~-~~sp~  187 (377)
T TIGR03300       118 IALDAEDGKELWRAKLSSE------VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPAL-TLRG-SASPV  187 (377)
T ss_pred             EEEECCCCcEeeeeccCce------eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCce-eecC-CCCCE
Confidence            9999999998877665432      111 111 23333334589999999998853222111 100000 0000 01112


Q ss_pred             EccCCCcEEEEEeCCCcEEEEecCCCeEEEE
Q 023672          230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYV  260 (279)
Q Consensus       230 ~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~  260 (279)
                      ..  + ..++.+..++.+..+|.++|+.+..
T Consensus       188 ~~--~-~~v~~~~~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       188 IA--D-GGVLVGFAGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             EE--C-CEEEEECCCCEEEEEEccCCCEeee
Confidence            21  2 3567778889999999988876643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=2.4e-05  Score=66.37  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             cCCCCcEEEEecC----CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce
Q 023672          134 SDPTSCVFASTTR----DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       134 ~~~~~~~l~s~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~  208 (279)
                      ++|...++++++.    .|.|.||- ++|++......+-      .+.+++|+|..-.|+.| .-|.+.+|...+.    
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~------hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~----   91 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV------HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT----   91 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce------ehhhhccChHHHHHhhccccceeEEEecCCc----
Confidence            3556667777653    56787774 6676544333222      45689999998888888 8899999998872    


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                       ...+..   ..|..+|..+.||| +|..|+++..-|.+.+|...
T Consensus        92 -e~htv~---~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 -ETHTVV---ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -eeeeec---cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence             222322   57889999999999 99999999999999999876

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.0055  Score=47.74  Aligned_cols=96  Identities=13%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             ceeeEEECCCCCEEEEe--cCCeEEEEEccC-CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEE
Q 023672          175 AAFSVAFNPTGTKIFAG--YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIY  250 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~w  250 (279)
                      ..+.|+||||++.++..  ..+.|.-|++.. .+.........  ......+..-.++... +|.+.+++..+| .|..|
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~--~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE--EccCCCCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence            55789999999888855  558888888762 11111110001  0122345566778887 777775555454 89999


Q ss_pred             ecCCCeEEEEEeecCCCEEEEEEc
Q 023672          251 REDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      +.. ++++..+..+...+++++|-
T Consensus       241 ~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         241 NPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             CCC-CcEEEEEECCCCCCccceEe
Confidence            987 99988888776677777774

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=8.3e-05  Score=61.06  Aligned_cols=93  Identities=24%  Similarity=0.355  Sum_probs=69.1

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec-CCCceE-EEEeeCcccccCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVY-DFCWFPHMSASDPTS  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~~~~~~  138 (279)
                      -.|.-+.|+|.-..+|++..+|.|.+..++-.+.                   .... ++..+. +++|       .|||
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl-------------------wtip~p~~~v~~sL~W-------~~DG   74 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL-------------------WTIPIPGENVTASLCW-------RPDG   74 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecccee-------------------EeccCCCCccceeeee-------cCCC
Confidence            3477899999999999999999988887762211                   2222 445555 8888       7789


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP  183 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (279)
                      +.||.|-.||+|++.|+.++..+........    ..|.++.|++
T Consensus        75 kllaVg~kdG~I~L~Dve~~~~l~~~~~s~e----~~is~~~w~~  115 (665)
T KOG4640|consen   75 KLLAVGFKDGTIRLHDVEKGGRLVSFLFSVE----TDISKGIWDR  115 (665)
T ss_pred             CEEEEEecCCeEEEEEccCCCceeccccccc----cchheeeccc
Confidence            9999999999999999999987766322111    1677888864

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00012  Score=60.25  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=69.4

Q ss_pred             ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceE-EEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .+.-+.|+|.-.++|.+ .+|.+.+..+.-     +.+.++    .-+...++ +++|.| +|.+|+.|-.||+|++.|+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----qRlwti----p~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW-----QRLWTI----PIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEecc-----ceeEec----cCCCCccceeeeecC-CCCEEEEEecCCeEEEEEc
Confidence            67789999999999966 888888887763     334444    22334455 999999 8999999999999999999


Q ss_pred             CCCeEEEEE-eecCCCEEEEEEcc
Q 023672          253 DNMELLYVL-HGQEGGVTHVSKLS  275 (279)
Q Consensus       253 ~~~~~~~~~-~~~~~~v~~~~~sp  275 (279)
                      .++..+... ......|..+-|.|
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             cCCCceeccccccccchheeeccc
Confidence            999877652 22456777777763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.87  E-value=0.0064  Score=49.25  Aligned_cols=188  Identities=11%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccc--ccccc---------------cc------c-CC-CCcccceee-
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY--DVNAC---------------SL------A-KD-QDSYEASLV-  115 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~---------------~~------~-~~-~~~~~~~~~-  115 (279)
                      .|+.+.|+++..-|++|...|.|.||.+...+...  .....               .+      . .. ...+..... 
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48899999998899999999999999886543221  00000               00      0 00 111221111 


Q ss_pred             ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC---ccccccceeeEEECC-----CC--
Q 023672          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFNP-----TG--  185 (279)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~-----~~--  185 (279)
                      ....++|..++.       | |=.+++.|+.+|.+.|.|+|....+..-....   .......++++.|..     |+  
T Consensus        83 ~~~~g~vtal~~-------S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   83 DAKQGPVTALKN-------S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             ---S-SEEEEEE---------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             eccCCcEeEEec-------C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            122456777654       2 44589999999999999999888777644333   111223577777762     32  


Q ss_pred             -CEEEEe-cCCeEEEEEccC-CCCceeeeeecccccCCCCCceEEEE-EccCC--------------------CcEEEEE
Q 023672          186 -TKIFAG-YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIA-FSPTH--------------------TGMLAIG  241 (279)
Q Consensus       186 -~~l~~~-~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~--------------------~~~l~~~  241 (279)
                       -.+++| ..|.+.+|.+.- .+..+..  .+......+.++|..+. ++.+.                    ..+++.+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence             345577 889999998862 1111211  11111124455555554 32211                    1134444


Q ss_pred             eCCCcEEEEecCCCeEEEE
Q 023672          242 SYSQTSAIYREDNMELLYV  260 (279)
Q Consensus       242 ~~dg~i~~wd~~~~~~~~~  260 (279)
                      + +..++++...+.+...+
T Consensus       233 S-e~~irv~~~~~~k~~~K  250 (395)
T PF08596_consen  233 S-ESDIRVFKPPKSKGAHK  250 (395)
T ss_dssp             --SSEEEEE-TT---EEEE
T ss_pred             c-ccceEEEeCCCCcccce
Confidence            4 66799999887765443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0016  Score=52.93  Aligned_cols=137  Identities=14%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCC--eE-----EEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGS--SF-----LTSSEDKTLRIFSLPENGISYDVNACSLAKDQD  108 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l-----~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  108 (279)
                      ++-.|++.++.+..|..      |.+ |+-+.+.|+.+  .|     +.|-.|..|.-||.+-....    ...      
T Consensus       358 l~klDIE~GKIVeEWk~------~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~------  420 (644)
T KOG2395|consen  358 LYKLDIERGKIVEEWKF------EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLA------  420 (644)
T ss_pred             ceeeecccceeeeEeec------cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eee------
Confidence            44556677776654432      333 77777887653  22     35666888999998732110    000      


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                       .........+....+++       .. ...+|++|+.+|.|++||--..+....++.-+.     +|..+..+.+|++|
T Consensus       421 -~~q~kqy~~k~nFsc~a-------TT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-----~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  421 -VVQSKQYSTKNNFSCFA-------TT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-----AIKHVDVTADGKWI  486 (644)
T ss_pred             -eeeccccccccccceee-------ec-CCceEEEeecCCcEEeehhhhhhhhhcccccCC-----ceeeEEeeccCcEE
Confidence             00001111122222222       12 334899999999999999733344445555555     89999999999999


Q ss_pred             EEecCCeEEEEEccC
Q 023672          189 FAGYNKSVRVFDVHR  203 (279)
Q Consensus       189 ~~~~d~~i~~~d~~~  203 (279)
                      ++..+..+.+.++.-
T Consensus       487 l~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  487 LATCKTYLLLIDTLI  501 (644)
T ss_pred             EEecccEEEEEEEec
Confidence            988888998888753

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00038  Score=58.07  Aligned_cols=122  Identities=8%  Similarity=0.065  Sum_probs=83.3

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      |...|.--+++..+++++.|+.-|.+.+|+-..+.....                 .......+.+++      .++++.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-----------------~~~~~~~~~~~~------~vs~~e   88 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-----------------KNEGATGITCVR------SVSSVE   88 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-----------------cccCccceEEEE------Eecchh
Confidence            334455455667788999999999999999876644211                 111122222222      347788


Q ss_pred             cEEEEecCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccC
Q 023672          139 CVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR  203 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~  203 (279)
                      .++|.|+..|.|.++-+..+.+ ...+..+.+..+...|++++|++++..+++| ..|.|.+-.+..
T Consensus        89 ~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   89 YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            8999999999999998876432 2222223333344589999999999999999 889988887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.77  E-value=0.012  Score=46.58  Aligned_cols=149  Identities=12%  Similarity=0.117  Sum_probs=84.8

Q ss_pred             CCeEEEeeC----------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           72 GSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        72 ~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      ..+|++|+.          .|.|.++++.+....           ..+..........++|++++-.        ++. |
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-----------~~~l~~i~~~~~~g~V~ai~~~--------~~~-l  101 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-----------NFKLKLIHSTEVKGPVTAICSF--------NGR-L  101 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEEEEESS-EEEEEEE--------TTE-E
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEccccc-----------ceEEEEEEEEeecCcceEhhhh--------CCE-E
Confidence            457776643          289999999864000           0011111223345678888641        344 4


Q ss_pred             EEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccC
Q 023672          142 ASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      +.+. ++.|.+|++...+ ....-..+..    ..+.++..  .++++++| ....+.++..+.....+..+..     .
T Consensus       102 v~~~-g~~l~v~~l~~~~~l~~~~~~~~~----~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-----d  169 (321)
T PF03178_consen  102 VVAV-GNKLYVYDLDNSKTLLKKAFYDSP----FYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVAR-----D  169 (321)
T ss_dssp             EEEE-TTEEEEEEEETTSSEEEEEEE-BS----SSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEE-----E
T ss_pred             EEee-cCEEEEEEccCcccchhhheecce----EEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEe-----c
Confidence            4433 5789999998877 4433332221    13444444  45688877 6777887766542332333322     2


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .....++++++-+ ++..++.+..+|.+.++...
T Consensus       170 ~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  170 YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred             CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEEC
Confidence            2345688999986 44689999999999998875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.76  E-value=0.0022  Score=55.82  Aligned_cols=101  Identities=10%  Similarity=0.027  Sum_probs=66.6

Q ss_pred             EEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccc
Q 023672          140 VFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      ..+.|-.+..+..||.|-..  .+.. ..+ .........|++-+.+|.+.+++.+|.||+||--.  .      ..+..
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~-~~k-~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g--~------~AKT~  613 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDS-QSK-QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG--K------RAKTA  613 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeec-ccc-ccccCCCceEEEecCCceEEEEeCCCcEEeecccc--h------hhhhc
Confidence            34556667889999998643  2211 111 11111257788888888777777999999999431  1      12222


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      +.+-..+|..|+.+. +|.++++.+ +..|.|++.
T Consensus       614 lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  614 LPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             CCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence            356678999999999 888888777 455777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0014  Score=56.19  Aligned_cols=137  Identities=12%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccc-eeeEEECCCCCEEE-EecC-C----eEEEEEccCC--C
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA-AFSVAFNPTGTKIF-AGYN-K----SVRVFDVHRP--G  205 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~-~~~d-~----~i~~~d~~~~--~  205 (279)
                      ++.+..++.|+.+|.|.+++- +-+....+..+..     . |..+.......+|+ .|.| +    .+++||+...  .
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             cCCCceEEEeeccccEEEecc-cceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            678889999999999988773 3444466666554     3 44443333445666 4533 3    6999999863  1


Q ss_pred             Cceeee---eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC---C-CeEEEEEeecCCCEEEEEEccCCC
Q 023672          206 RDFEKY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---N-MELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       206 ~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~---~-~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+..++   ............++.+++.+. +-..+|+|-.+|.|..+.-.   . +....-......+|+++++..||+
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence            223333   222222233467889999999 78899999999999888532   1 111111222356899999988875

>smart00320 WD40 WD40 repeats

Probab=97.70  E-value=0.00013  Score=36.81  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=28.5

Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      ..|...|.++.|++ ++.++++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            46677899999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.69  E-value=0.0028  Score=52.31  Aligned_cols=128  Identities=13%  Similarity=0.199  Sum_probs=73.2

Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-----CeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                      ..+.-+.|..+.|.|.+.+-.|   -+++......|.+|.+.-     ++.+.....+-...-.--...+.|+|....|+
T Consensus        52 viGqFEhV~GlsW~P~~~~~~p---aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~  128 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTP---ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILT  128 (671)
T ss_pred             EeeccceeeeeeecCcccCCCC---ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEE
Confidence            3455578999999987544333   444555677899998852     23222221111100001234688999998888


Q ss_pred             Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecC
Q 023672          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED  253 (279)
Q Consensus       190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~  253 (279)
                      +- ....-.+++++......+.  .+     ...+.|.|.||.+ +|+.|+.+ +..=.-++||-.
T Consensus       129 VLT~~dvSV~~sV~~d~srVka--Di-----~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  129 VLTARDVSVLPSVHCDSSRVKA--DI-----KTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEecCceeEeeeeeeCCceEEE--ec-----cCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence            53 3333345666653322221  22     2356799999999 66655554 444446889854

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.69  E-value=0.015  Score=45.37  Aligned_cols=186  Identities=11%  Similarity=0.096  Sum_probs=107.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      +++++|..+++.+....        .+..-.+..+|+++.+++++          +.-.|.+||..+.....+.      
T Consensus        18 rv~viD~d~~k~lGmi~--------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI------   83 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMID--------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI------   83 (342)
T ss_dssp             EEEEEETTTTEEEEEEE--------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE------
T ss_pred             eEEEEECCCCcEEEEee--------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE------
Confidence            67888888888665321        12234467899999888643          3457999999976443321      


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (279)
                                ....+.....+ -.+...+++.++++++....  ...|.|-|+..++.+..+..++.       ..+-=+
T Consensus        84 ----------~iP~k~R~~~~-~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-------~~iyP~  145 (342)
T PF06433_consen   84 ----------EIPPKPRAQVV-PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-------WLIYPS  145 (342)
T ss_dssp             ----------EETTS-B--BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-------EEEEEE
T ss_pred             ----------ecCCcchheec-ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-------EEEEec
Confidence                      22211111111 13334566888988877643  45799999999999988887652       222222


Q ss_pred             CCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCC-ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       183 ~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      ++..+...|.||.+.-..+...++.......   .+..... .+..-++.. .+..++--+.+|.|+--|+....
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTK---VFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEEE---ESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSS
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeecc---ccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCc
Confidence            2334444679999999999876665433222   2222222 233445555 44444446788888888776543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.015  Score=43.98  Aligned_cols=183  Identities=10%  Similarity=0.149  Sum_probs=104.6

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      +.|-...|.++.|+|+.+.|++......-.|+=-.+|..........             .+..+.|          +..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------------~~DpE~I----------eyi  137 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------------FSDPETI----------EYI  137 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------------cCChhHe----------EEe
Confidence            34555669999999999988877776666665444444322211110             1111122          224


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeE-----EEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                      .+++++++--.++.+.++.+.......     .+......+.......++|.|....++.. .-.-+.||..........
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence            466677776777888777766542211     22322222224478899999998877766 666677776664222221


Q ss_pred             eeeeccc--ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          210 KYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       210 ~~~~~~~--~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .......  ...-.-..+.++.|++..+.+|+-+.+++.+.-.|. .|+++..+.
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~ls  271 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLS  271 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEE
Confidence            1111100  000012357889999867788888888888877775 444444443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.57  E-value=3.5e-05  Score=65.85  Aligned_cols=130  Identities=13%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCc
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~  207 (279)
                      +++|+.+.++|+.|+..|.|+++++.+|........|..     .|+.+.-+.+|..++ ++  ...-..+|++...+  
T Consensus      1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-----avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~-- 1178 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-----AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG-- 1178 (1516)
T ss_pred             eEEeecCCceEEeeeccceEEEEEccCcccccccccccc-----ccccccccCCcceeeeeccccCchHHHhcccccc--
Confidence            567899999999999999999999999999888888887     899999899998776 33  34467899997522  


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-Eee---cCCCEEEEEEccCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHG---QEGGVTHVSKLSSA  277 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~---~~~~v~~~~~spdg  277 (279)
                       .....+        ..-.++.|+. ..+.-+.|+......+||+.++.++.+ +.+   .+-.-....|||+.
T Consensus      1179 -~~~Hsf--------~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1179 -GPRHSF--------DEDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             -Cccccc--------cccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence             111122        2345789988 566666666667789999999987655 322   11122567788864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.56  E-value=0.002  Score=52.88  Aligned_cols=127  Identities=10%  Similarity=0.120  Sum_probs=68.9

Q ss_pred             EEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEE-EccC
Q 023672          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF-DVHR  203 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~-d~~~  203 (279)
                      +...|..+..+|+|++++.++ ||...++.....+...  .+        ......|.+++++.+.-.++.|.++ ++..
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~G--------~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--FG--------SGLSFVWSSRNRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--EE--------E-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--cC--------ceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence            334466677799999999855 7777777744333322  11        3347889997665554468889996 3322


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       . ..+   .+.     ....+..+-  +  |.+|+..+. +.|.+||+.+++.+..+...  +|..+.|+++|.+
T Consensus       100 -~-~~k---~i~-----~~~~~~~If--~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~  158 (443)
T PF04053_consen  100 -E-VVK---SIK-----LPFSVEKIF--G--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL  158 (443)
T ss_dssp             ---TT-------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE
T ss_pred             -c-cce---EEc-----CCcccceEE--c--CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE
Confidence             1 000   110     011122222  2  566666654 48999999999999998843  4899999999863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.55  E-value=0.00039  Score=37.19  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=30.0

Q ss_pred             CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                      ...|.+++|+| ...+||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45699999999 8999999999999999998 5554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.49  E-value=0.04  Score=45.08  Aligned_cols=107  Identities=14%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +..++.++.++.+..+|+.+|+.+.......       ...+..  .+..++ .+.++.+..+|..++..... ....  
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~-~~~~--  323 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS-QSDL--  323 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc-cccc--
Confidence            4456677788999999999998776654321       111222  234454 55899999999987421111 1011  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                         .+ ....+....   +..|+.++.+|.|+..|..+|+.+...+.
T Consensus       324 ---~~-~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        324 ---LH-RLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             ---CC-CcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence               00 111222221   34677888999999999999998877654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.48  E-value=0.028  Score=48.14  Aligned_cols=74  Identities=8%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccC--CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHR--PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .|..+.|+|||..++.-.++.|.+--+..  ++. .. +........+-...+.++.|.+ ++.++ .+..++...+|.+
T Consensus       449 ~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        449 PISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-ee-ecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence            68999999999998855467777733222  121 11 1111111122233467899999 77755 5455554445554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.47  E-value=0.0073  Score=53.95  Aligned_cols=114  Identities=18%  Similarity=0.334  Sum_probs=70.8

Q ss_pred             eEEEEEccCCCeEEEe-----eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           63 LKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      =+.|.|--||+++|+.     ..-..|+|||.+ +.+..                 ......+.-.+++|       -|.
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-----------------~se~~~~l~~~LsW-------kPs  252 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-----------------TSEPVEGLQHSLSW-------KPS  252 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-----------------ccCcccccccceee-------cCC
Confidence            3568999999999873     323799999988 33211                 11111122234555       566


Q ss_pred             CcEEEEe---cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE---e-cCCeEEEEEccC
Q 023672          138 SCVFAST---TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA---G-YNKSVRVFDVHR  203 (279)
Q Consensus       138 ~~~l~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~-~d~~i~~~d~~~  203 (279)
                      |..+++-   ..|+.|.++.- +|-....+......+.. .|..++|+.++..|++   . ....|++|-+.+
T Consensus       253 gs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  253 GSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CCeEeeeeecCCCCcEEEEec-CCccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecC
Confidence            7777775   34557888884 44433333332221111 4889999999999984   3 445599998876

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.46  E-value=0.053  Score=46.04  Aligned_cols=133  Identities=14%  Similarity=0.023  Sum_probs=77.8

Q ss_pred             ccCCCCcEEEE-ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c------------------
Q 023672          133 ASDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y------------------  192 (279)
Q Consensus       133 ~~~~~~~~l~s-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------------------  192 (279)
                      -++|+|+.+.. .-..+.+.+.|..+.+....+....      ....+.++|+|+++++. .                  
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~  272 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW  272 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence            45778876543 3345678888998888777776655      33467788888877633 1                  


Q ss_pred             ----------------------CCeEEEEEccCCC-CceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEeCCCcEE
Q 023672          193 ----------------------NKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGSYSQTSA  248 (279)
Q Consensus       193 ----------------------d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~~dg~i~  248 (279)
                                            ++.|.++|.++.. ........+.     -......+.++| +|.+ ++++..+.++.
T Consensus       273 ~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-----VGKsPHGV~vSP-DGkylyVanklS~tVS  346 (635)
T PRK02888        273 VVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-----VPKNPHGVNTSP-DGKYFIANGKLSPTVT  346 (635)
T ss_pred             EEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-----CCCCccceEECC-CCCEEEEeCCCCCcEE
Confidence                                  1335555554400 0001111121     123466889999 5555 55556689999


Q ss_pred             EEecCCCeE------------EEEEeecCCCEEEEEEccCCC
Q 023672          249 IYREDNMEL------------LYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       249 ~wd~~~~~~------------~~~~~~~~~~v~~~~~spdg~  278 (279)
                      |.|+.+.+.            +.+...-. .....+|.++|.
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~  387 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN  387 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCC
Confidence            999987542            33333322 345577777763

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.43  E-value=0.012  Score=43.72  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=76.1

Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ..+++.|+..+.+.--|..+|+.........      .+.+-+.- -|++++.| ..|.+++.+.+++ .......... 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~~-   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVILE-   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecch-hheeeeeehh-
Confidence            3478888999999999999998877655443      22222221 36677766 9999999999994 3333332221 


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                            .--......+ ++.++..|+.|+..+..|.++..++.+.+
T Consensus        94 ------~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   94 ------TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ------hhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence                  1112345667 88899999999999999999988887755

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.43  E-value=0.00078  Score=36.02  Aligned_cols=31  Identities=16%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP   90 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~   90 (279)
                      ...|.+++|+|...+||.|+.||.|.+|.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3569999999999999999999999999984

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.056  Score=43.94  Aligned_cols=181  Identities=14%  Similarity=0.153  Sum_probs=110.0

Q ss_pred             ceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           62 FLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .-..++++|+++.+.++..   ++++.+.|..+......                  ..-+.       .|..++++|++
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~------------------~~vG~-------~P~~~a~~p~g  171 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT------------------IPVGN-------TPTGVAVDPDG  171 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE------------------EecCC-------CcceEEECCCC
Confidence            4567899999987776655   67888888776543211                  11110       23345678999


Q ss_pred             cEEEEec-CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cC--CeEEEEEccCCCCceeeeee
Q 023672          139 CVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YN--KSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       139 ~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d--~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ..++.+. .++.|.+.|........ -..............+.++|++..+++.  .+  +.+...|..++ ........
T Consensus       172 ~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~  249 (381)
T COG3391         172 NKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLP  249 (381)
T ss_pred             CeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccc
Confidence            9766665 78899999977665543 1111011111145689999999977743  33  58888888873 11111001


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecCCCeEEEEEeecCC---CEEEEEEccC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEG---GVTHVSKLSS  276 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~spd  276 (279)
                           .+-. ....+..+| .+..+... +..+.+.+.|..+......+.....   .+..+++.+.
T Consensus       250 -----~~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         250 -----VGSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             -----cccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence                 1111 455689999 77766666 4458899999988877766554332   3555555553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.36  E-value=0.018  Score=47.13  Aligned_cols=137  Identities=11%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEE
Q 023672           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (279)
Q Consensus        72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (279)
                      +..++.++.+|.+..+|..+++......                .   .....+         ...+..++.++.++.+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~----------------~---~~~~~~---------~~~~~~vy~~~~~g~l~  307 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKRE----------------Y---GSVNDF---------AVDGGRIYLVDQNDRVY  307 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeec----------------C---CCccCc---------EEECCEEEEEcCCCeEE
Confidence            4456667778888888888765422110                0   000000         11345777788899999


Q ss_pred             EEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceE-EEEE
Q 023672          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS-AIAF  230 (279)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~  230 (279)
                      .+|..+|+.+.........    ...+..+. ++.+++...+|.+.++|..++ +.......      . ...+. ...+
T Consensus       308 ald~~tG~~~W~~~~~~~~----~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~------~-~~~~~s~P~~  374 (394)
T PRK11138        308 ALDTRGGVELWSQSDLLHR----LLTAPVLY-NGYLVVGDSEGYLHWINREDG-RFVAQQKV------D-SSGFLSEPVV  374 (394)
T ss_pred             EEECCCCcEEEcccccCCC----cccCCEEE-CCEEEEEeCCCEEEEEECCCC-CEEEEEEc------C-CCcceeCCEE
Confidence            9999999876654321110    11122221 344444558999999999884 32221111      1 11121 2222


Q ss_pred             ccCCCcEEEEEeCCCcEEEEec
Q 023672          231 SPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       231 sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                       . ++ .|+.++.||.|+.+++
T Consensus       375 -~-~~-~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        375 -A-DD-KLLIQARDGTVYAITR  393 (394)
T ss_pred             -E-CC-EEEEEeCCceEEEEeC
Confidence             2 33 6777788999887764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.36  E-value=0.018  Score=46.50  Aligned_cols=142  Identities=13%  Similarity=0.040  Sum_probs=72.8

Q ss_pred             CcccccCCCCcEEEEec-----------CCC-cEEEEECCC--Ceee--EEEeccCccccccceeeEEECCCCCEEEEec
Q 023672          129 PHMSASDPTSCVFASTT-----------RDH-PIHLWDATT--GLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFAGY  192 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~-----------~d~-~i~i~d~~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (279)
                      |..+++.++|+++++-.           ..+ .|.+++-.+  |+..  ..+...-.     ....+++.+++ ++++..
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~-----~p~Gi~~~~~G-lyV~~~   89 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS-----MVTGLAVAVGG-VYVATP   89 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC-----CccceeEecCC-EEEeCC
Confidence            44456688888777643           223 676665433  3322  22221111     45789999998 444444


Q ss_pred             CCeEEEEEccCCCCc---eeee-eecccccCCCCCceEEEEEccCCCcEEEEEeCC-------------------CcEEE
Q 023672          193 NKSVRVFDVHRPGRD---FEKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------------------QTSAI  249 (279)
Q Consensus       193 d~~i~~~d~~~~~~~---~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-------------------g~i~~  249 (279)
                      ....++.|....+..   .+.+ ..+......+......++|.| +|.+.++-+..                   |.|.-
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            433334455432111   1111 112111011234577899999 77766654421                   34555


Q ss_pred             EecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          250 YREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       250 wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +|..+++. ..+...-....+++|+|+|+
T Consensus       169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~  196 (367)
T TIGR02604       169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGD  196 (367)
T ss_pred             EecCCCeE-EEEecCcCCCccceECCCCC
Confidence            56555443 23322223457899999885

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.35  E-value=0.043  Score=42.35  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=85.4

Q ss_pred             cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCc
Q 023672           70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP  149 (279)
Q Consensus        70 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~  149 (279)
                      ..++.|+.|+.+| +.+++.......                  ....+..+|..+..       -++-+.+++-+ |+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~------------------~~i~~~~~I~ql~v-------l~~~~~llvLs-d~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKP------------------TRILKLSSITQLSV-------LPELNLLLVLS-DGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccc------------------eeEeecceEEEEEE-------ecccCEEEEEc-CCc
Confidence            3578899999999 899988321110                  11112223666654       33334444444 599


Q ss_pred             EEEEECCCCeeeEEEe---c------cCccccccceeeEE---ECCCCCEEEEecCCeEEEEEccCCCCce-eeeeeccc
Q 023672          150 IHLWDATTGLLRCTYR---A------YDAVDEITAAFSVA---FNPTGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKG  216 (279)
Q Consensus       150 i~i~d~~~~~~~~~~~---~------~~~~~~~~~v~~~~---~~~~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~  216 (279)
                      +.++++..-.......   .      .........+...+   -......++++....|.+|....+...+ .....+  
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--  135 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--  135 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--
Confidence            9999997654333110   0      00011111333333   1223345556677799999998743333 333333  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~  259 (279)
                         .-...+.+++|.+   ..++.|..++ ..+.|+.++....
T Consensus       136 ---~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~  171 (275)
T PF00780_consen  136 ---SLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSE  171 (275)
T ss_pred             ---EcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceE
Confidence               2236788999985   4666666444 7788988776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.22  E-value=0.038  Score=40.53  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             eeEEECCCCCEEE-E-ecCCeEEEEEc--cCCCC-ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          177 FSVAFNPTGTKIF-A-GYNKSVRVFDV--HRPGR-DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       177 ~~~~~~~~~~~l~-~-~~d~~i~~~d~--~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      ..++|+.+.+.++ . +.+-.|.-||.  .++.. ..+.+..++.......-..-.++... +|.+.++.-..++|.-.|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            5789998877776 4 37778877884  33211 11111112111011111233456666 788888888888999999


Q ss_pred             cCCCeEEEEEeecCCCEEEEEEc
Q 023672          252 EDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      ..+|+.+.++.-....|++++|-
T Consensus       240 p~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEec
Confidence            99999999999888899999985

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.20  E-value=0.054  Score=40.40  Aligned_cols=102  Identities=13%  Similarity=0.029  Sum_probs=66.3

Q ss_pred             CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEE
Q 023672           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (279)
Q Consensus        72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (279)
                      |++++.|...|.+.+.+..++........+                  +.|..-      ....+++..+..++.|+...
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------------------~~vk~~------a~~d~~~glIycgshd~~~y  118 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------------------ETVKVR------AQCDFDGGLIYCGSHDGNFY  118 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh------------------hhhccc------eEEcCCCceEEEecCCCcEE
Confidence            567888999999999998887442221111                  111111      12366889999999999999


Q ss_pred             EEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEecCCeEEEEEcc
Q 023672          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDVH  202 (279)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~~~d~~  202 (279)
                      ..|.++..++.+.+..+.     -..+-++.| ++.+.++...|.+.--..+
T Consensus       119 alD~~~~~cVykskcgG~-----~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  119 ALDPKTYGCVYKSKCGGG-----TFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             EecccccceEEecccCCc-----eeccceecCCCceEEEEeccceEEEEccC
Confidence            999999988888776654     333455666 4555555555555444444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.0024  Score=56.19  Aligned_cols=103  Identities=19%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +..++.|+..|.+-..|.... ...   .+.......+|++++|+.+|..++.| .+|.|.+||+.+ +...+.+...  
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~--  171 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-LGP---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEH--  171 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-cch---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeeec--
Confidence            336888888888988887653 111   12222223489999999999999999 999999999998 3444333222  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                       ...+.+ |.-+.+.. ++..++++...|.  +|.+
T Consensus       172 -~ap~t~-vi~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 -GAPVTG-VIFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             -CCccce-EEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence             122233 33444444 4457888877775  5543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.13  E-value=0.081  Score=44.61  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE------------------ecCCeEEEEEc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA------------------GYNKSVRVFDV  201 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~------------------~~d~~i~~~d~  201 (279)
                      .++.++.+|.+...|.++|+.+........        .+..+| +..++.                  ..+|.+.-.|+
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeecc--------ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence            577888899999999999998887654211        122333 211111                  13577888888


Q ss_pred             cCCCCceeeeeecccccC-CCCCce--EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          202 HRPGRDFEKYSTLKGNKE-GQAGIM--SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~-~~~~~v--~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .++....+.. ....... .-..+.  ..+..   .+..|+.++.||.|+.+|..+|+.+-+.+.
T Consensus       374 ~tG~~~W~~~-~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         374 KTGKVVWEKR-EGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCCcEeeEee-CCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8753222111 0000000 000011  11222   446788888999999999999998877664

The alignment model contains an 8-bladed beta-propeller.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.13  E-value=0.073  Score=40.56  Aligned_cols=154  Identities=17%  Similarity=0.165  Sum_probs=84.8

Q ss_pred             ceEEEEEccCCCeEEEee---CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           62 FLKGIKWSPDGSSFLTSS---EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .+...+++++++.+|...   ....+.++.......                    ....+..+..-.|       ++++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~--------------------~~~~g~~l~~PS~-------d~~g   77 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR--------------------PVLTGGSLTRPSW-------DPDG   77 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce--------------------eeccCCccccccc-------cCCC
Confidence            688999999999877555   233444444332110                    0112224444444       7777


Q ss_pred             cEEEEecCCCcEEEEE-CCCCeeeE-EEeccCccccccceeeEEECCCCCEEE-Ee---cCCeEEEEEccCCCCc-eeee
Q 023672          139 CVFASTTRDHPIHLWD-ATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRD-FEKY  211 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d-~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~~~d~~~~~~~-~~~~  211 (279)
                      ...+....+...+++. ..++.... .........   .|..+.++|||..++ ..   .++.|.+--+...... ...+
T Consensus        78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~---~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l  154 (253)
T PF10647_consen   78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRG---RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL  154 (253)
T ss_pred             CEEEEEcCCCceEEEEecCCCcceeEEecccccCC---ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence            6666666666666663 33333221 222221101   689999999998887 32   3677877766542222 1111


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~  246 (279)
                      .............+..+.|.+ ++.+++.+...+.
T Consensus       155 ~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~~~~  188 (253)
T PF10647_consen  155 TGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRSAGG  188 (253)
T ss_pred             ccceEecccccCcceeeeecC-CCEEEEEeCCCCC
Confidence            111111123346789999999 7777776655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.12  E-value=0.095  Score=43.20  Aligned_cols=112  Identities=15%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             ccCCCCcEEEEe-cCCC----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--c---------CCe
Q 023672          133 ASDPTSCVFAST-TRDH----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--Y---------NKS  195 (279)
Q Consensus       133 ~~~~~~~~l~s~-~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~---------d~~  195 (279)
                      .++|+++++|.+ +..|    .|+++|+.+++.+...-...      ....+.|.++++.++ +.  .         ...
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            458999988865 3334    59999999997664321111      223499999988776 43  2         224


Q ss_pred             EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-C---CcEEEEecCCC
Q 023672          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S---QTSAIYREDNM  255 (279)
Q Consensus       196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-d---g~i~~wd~~~~  255 (279)
                      |+.|.+.++...-..+..-    .........+..++ ++.+|+..+. .   ..+++.|+..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~----~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEE----PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEECCCChHhCeeEEee----cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEecccc
Confidence            7788887642221222111    11122366888999 6776664332 2   34788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=97.11  E-value=0.0024  Score=33.06  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=27.2

Q ss_pred             CceEEEEEccCCC--cEEEEEeCCCcEEEEecCC
Q 023672          223 GIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       223 ~~v~~~~~sp~~~--~~l~~~~~dg~i~~wd~~~  254 (279)
                      +++.++.|+|.++  .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998555  6899988889999999995

It contains a characteristic DLL sequence motif.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.03  E-value=0.14  Score=42.12  Aligned_cols=30  Identities=10%  Similarity=0.297  Sum_probs=22.0

Q ss_pred             CceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC
Q 023672          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT  157 (279)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~  157 (279)
                      +.+..+.|       +.+. .|+....||.++++|+..
T Consensus        81 ~~iv~~~w-------t~~e-~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   81 GRIVGMGW-------TDDE-ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             CCEEEEEE-------CCCC-eEEEEEcCCEEEEEeCCC
Confidence            57777777       4443 555667899999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.99  E-value=0.06  Score=40.77  Aligned_cols=128  Identities=12%  Similarity=0.129  Sum_probs=82.2

Q ss_pred             EEEEecCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-----CeEEEEEccCCCCceeeee
Q 023672          140 VFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       140 ~l~s~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~~~d~~~~~~~~~~~~  212 (279)
                      -++.+-.-|+ ..++|..+.+...++.......   ..-.=.|||||.+|++. .|     |.|-|||.+..   +....
T Consensus        82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~---fqrvg  155 (366)
T COG3490          82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG---FQRVG  155 (366)
T ss_pred             eEEEEecCCceEEEECCCCCcCcEEEecccCce---eecccccCCCCcEEEeecCCCCCCCceEEEEecccc---cceec
Confidence            4566666665 4578998888777766554322   22245799999999965 33     78999999853   23323


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeC------------------CCcEEEEecCCCeEEEE--Ee--ecCCCEEE
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------------------SQTSAIYREDNMELLYV--LH--GQEGGVTH  270 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------------------dg~i~~wd~~~~~~~~~--~~--~~~~~v~~  270 (279)
                      .+    ..|.-....+.|.+ +|..|+.+..                  .-++.+.|..+|+++.+  +.  .+.-.|+.
T Consensus       156 E~----~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         156 EF----STHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cc----ccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence            33    56666777899999 7887776632                  11344556566665543  22  23346788


Q ss_pred             EEEccCCC
Q 023672          271 VSKLSSAY  278 (279)
Q Consensus       271 ~~~spdg~  278 (279)
                      ++.-+||+
T Consensus       231 ld~g~dgt  238 (366)
T COG3490         231 LDIGRDGT  238 (366)
T ss_pred             eeeCCCCc
Confidence            88888875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.0027  Score=55.94  Aligned_cols=83  Identities=19%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       184 ~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .+..++.| ..|.+...|+..+-.+      + .....-.++|++++|+. +|.+++.|-.+|.|.+||+..++++..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~------~-~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP------L-HQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch------h-hcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeee
Confidence            34566666 7788988888763111      1 11133467899999999 99999999999999999999999888888


Q ss_pred             ecCCCEEEEEEc
Q 023672          263 GQEGGVTHVSKL  274 (279)
Q Consensus       263 ~~~~~v~~~~~s  274 (279)
                      .|..+.+++-++
T Consensus       170 e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  170 EHGAPVTGVIFV  181 (1206)
T ss_pred             ecCCccceEEEE
Confidence            777766665443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.97  E-value=0.0082  Score=48.23  Aligned_cols=63  Identities=13%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             CCCCcEEEEe---------cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672          135 DPTSCVFAST---------TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       135 ~~~~~~l~s~---------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~  203 (279)
                      |||+++++..         +..+.+.++|+.+++....... ..     .+....|+|+|+.++-..++.|.++++.+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~-----~~~~~~~sP~g~~~~~v~~~nly~~~~~~   72 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PP-----KLQDAKWSPDGKYIAFVRDNNLYLRDLAT   72 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ET-----TBSEEEE-SSSTEEEEEETTEEEEESSTT
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-cc-----ccccceeecCCCeeEEEecCceEEEECCC
Confidence            4566666653         2245789999999765443333 22     67789999999999988889999998876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.95  E-value=0.13  Score=40.92  Aligned_cols=168  Identities=18%  Similarity=0.243  Sum_probs=90.0

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCe------EEEEeCCCCcc-ccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKT------LRIFSLPENGI-SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~------i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      -+.+.++.+.+++..+++.+.+|.      +..+++..... ........        ...+....+.+...-...+..+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~L~~~~G~~~~~~~~D~Egi   90 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD--------MIPLRDPDGQPFPKNGLDPEGI   90 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc--------ceeccCCCCCcCCcCCCChhHe
Confidence            467899999976666777777777      65555543100 00000000        0001111122222122234445


Q ss_pred             ccCCCCcEEEEecCC------CcEEEEECCCCeeeEEEeccC----------ccccccceeeEEECCCCCEEEEe-----
Q 023672          133 ASDPTSCVFASTTRD------HPIHLWDATTGLLRCTYRAYD----------AVDEITAAFSVAFNPTGTKIFAG-----  191 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d------~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~-----  191 (279)
                      ++.+++.++++.-.+      ..|..++.. |+....+..+.          .......+.+|+++|+|+.|++.     
T Consensus        91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l  169 (326)
T PF13449_consen   91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL  169 (326)
T ss_pred             EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence            566778788877667      788888876 76655553222          12234478899999999955422     


Q ss_pred             -cCC--e-------EEEEEcc--CCCCceeeeeecccccCC-----CCCceEEEEEccCCCcEEEE
Q 023672          192 -YNK--S-------VRVFDVH--RPGRDFEKYSTLKGNKEG-----QAGIMSAIAFSPTHTGMLAI  240 (279)
Q Consensus       192 -~d~--~-------i~~~d~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~~l~~  240 (279)
                       .|+  .       ++++...  +.+.....+   ......     ....+..+.+-+ ++.+|+.
T Consensus       170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~---~y~ld~~~~~~~~~~isd~~al~-d~~lLvL  231 (326)
T PF13449_consen  170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEY---AYPLDPPPTAPGDNGISDIAALP-DGRLLVL  231 (326)
T ss_pred             cCCCcccccccCceEEEEEecCCCCCccceEE---EEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence             122  1       5555444  322222222   111121     456788899999 7777664

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.93  E-value=0.11  Score=39.26  Aligned_cols=122  Identities=11%  Similarity=0.170  Sum_probs=73.0

Q ss_pred             ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEE
Q 023672          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF  199 (279)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~  199 (279)
                      .+..+.|.|.      ++.++++....+.|..++. +|+.+..+.....    .....|++..++.++++. .++.+.++
T Consensus        23 e~SGLTy~pd------~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   23 ELSGLTYNPD------TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----GDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             -EEEEEEETT------TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             CccccEEcCC------CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            4778877443      3557777788888988886 5788888776542    156789998888888877 79999999


Q ss_pred             EccCCCCce--eeeeeccccc-CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          200 DVHRPGRDF--EKYSTLKGNK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       200 d~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      ++.......  .....+.-.. ..+...+-.++|+| .+..|+.+-+..-..||.++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEES
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEcc
Confidence            995433222  1112222111 23456689999999 666666667766666776653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.92  E-value=0.21  Score=43.39  Aligned_cols=105  Identities=12%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             CCcEEEEecCCCcEEEEECCC-------C----e---------eeEEEeccCccccccceeeEEEC--CCCCEEEEe-cC
Q 023672          137 TSCVFASTTRDHPIHLWDATT-------G----L---------LRCTYRAYDAVDEITAAFSVAFN--PTGTKIFAG-YN  193 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~-------~----~---------~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~-~d  193 (279)
                      +...|+.|..||.|.+|.+++       .    .         +...+...      ..+++++++  ...++||+| ..
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~------~SaWGLdIh~~~~~rlIAVSsNs  186 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG------ASAWGLDIHDYKKSRLIAVSSNS  186 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC------CceeEEEEEecCcceEEEEecCC
Confidence            455789999999999997632       0    0         11111111      278999998  888899977 77


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC----Cc-EEEEEeCCCcEEEEec
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH----TG-MLAIGSYSQTSAIYRE  252 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~-~l~~~~~dg~i~~wd~  252 (279)
                      ..|.||-+............     ..+...|.+|+|-+++    |. .+++++-.|.+.+|++
T Consensus       187 ~~VTVFaf~l~~~r~~~~~s-----~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  187 QEVTVFAFALVDERFYHVPS-----HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ceEEEEEEeccccccccccc-----cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            78888766542111111101     2355678899998732    22 7888899999888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.92  E-value=0.18  Score=41.59  Aligned_cols=114  Identities=23%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             ceEEEEEccCCCeEEEe-eCC----CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           62 FLKGIKWSPDGSSFLTS-SED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~-~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      .+...+++|++++||.+ +..    ..++++|+.+++.....               +..   .....+.|       .+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---------------i~~---~~~~~~~W-------~~  179 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---------------IEN---PKFSSVSW-------SD  179 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---------------EEE---EESEEEEE-------CT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---------------ccc---cccceEEE-------eC
Confidence            34467899999988843 333    45999999987442110               000   01112555       66


Q ss_pred             CCcEEEEecCC-----------CcEEEEECCCCeee--EEEeccCccccccceeeEEECCCCCEEEE--e--cC-CeEEE
Q 023672          137 TSCVFASTTRD-----------HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G--YN-KSVRV  198 (279)
Q Consensus       137 ~~~~l~s~~~d-----------~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~--~d-~~i~~  198 (279)
                      ++..|+....+           ..|..|.+.+....  ..+.....  .. ....+..++++++++.  .  .+ ..+.+
T Consensus       180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~--~~-~~~~~~~s~d~~~l~i~~~~~~~~s~v~~  256 (414)
T PF02897_consen  180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE--PF-WFVSVSRSKDGRYLFISSSSGTSESEVYL  256 (414)
T ss_dssp             TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC--TT-SEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred             CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC--Cc-EEEEEEecCcccEEEEEEEccccCCeEEE
Confidence            76665554322           24788888776443  33333322  10 1457889999999873  2  33 56888


Q ss_pred             EEccC
Q 023672          199 FDVHR  203 (279)
Q Consensus       199 ~d~~~  203 (279)
                      .|+..
T Consensus       257 ~d~~~  261 (414)
T PF02897_consen  257 LDLDD  261 (414)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            88876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.014  Score=52.12  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             ceEEEEEccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           62 FLKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .|..+...+|+...++  .+.+-.|..||+++-..........+      ..............++.|+|..    |.  
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl------~~s~ts~ek~vf~~~~~wnP~v----p~--  169 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPL------KNSATSFEKPVFQLKNVWNPLV----PL--  169 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccc------ccccchhccccccccccccCCc----cc--
Confidence            4556666778765443  34455788999975432110000000      0001222333455667776652    11  


Q ss_pred             EEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          140 VFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      ..+.+..|+.|++..+.... ....+....      ..++++|+|.|+.+++| ..|++.-|-..-     +....+...
T Consensus       170 n~av~l~dlsl~V~~~~~~~~~v~s~p~t~------~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-----eik~~ip~P  238 (1405)
T KOG3630|consen  170 NSAVDLSDLSLRVKSTKQLAQNVTSFPVTN------SQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-----EIKSEIPEP  238 (1405)
T ss_pred             hhhhhccccchhhhhhhhhhhhhcccCccc------ceeeEEeccccceeeEecCCCeEEEeeccc-----ceeecccCC
Confidence            45667778888887765432 222223222      67899999999999999 889888876653     111122211


Q ss_pred             cCCCCCceEEEEEccCCCcEEEE
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAI  240 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~  240 (279)
                      -......|.+++|-. ...+|+.
T Consensus       239 p~~e~yrvl~v~Wl~-t~eflvv  260 (1405)
T KOG3630|consen  239 PVEENYRVLSVTWLS-TQEFLVV  260 (1405)
T ss_pred             CcCCCcceeEEEEec-ceeEEEE
Confidence            112257899999977 5555554

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.81  E-value=0.073  Score=45.72  Aligned_cols=138  Identities=10%  Similarity=0.039  Sum_probs=69.8

Q ss_pred             ccccCCCCcEEEEec------CCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecC--CeEEEEE
Q 023672          131 MSASDPTSCVFASTT------RDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN--KSVRVFD  200 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~~~d  200 (279)
                      ..+++|+|+.++...      .|.  .|.+++. .+.. ..+.. ..     ....-.|+|+|..+....|  ..+++.+
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GH-----SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CC-----CCCCceECCCCCceEEEecCcceEEEec
Confidence            346789999887665      243  4555554 2222 22221 11     3567899999877663322  2233332


Q ss_pred             ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEE---EecCCCeE-E---EEEe-ecCCCEEEEE
Q 023672          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI---YREDNMEL-L---YVLH-GQEGGVTHVS  272 (279)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~---wd~~~~~~-~---~~~~-~~~~~v~~~~  272 (279)
                      -...+........-........+.|..+.||| +|..++... +|.|++   -....|+. +   ..+. .-...+.++.
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            22111110000000000002245699999999 777766655 477776   44344431 1   1122 2233468889


Q ss_pred             EccCCC
Q 023672          273 KLSSAY  278 (279)
Q Consensus       273 ~spdg~  278 (279)
                      |.+++.
T Consensus       504 W~~~~~  509 (591)
T PRK13616        504 WRTGDS  509 (591)
T ss_pred             EecCCE
Confidence            988874

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.77  E-value=0.026  Score=41.32  Aligned_cols=106  Identities=15%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             EEEEEccCCCeEE-EeeCCCeEEEEe--CCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           64 KGIKWSPDGSSFL-TSSEDKTLRIFS--LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        64 ~~~~~~~~~~~l~-t~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      +.++|+.+.+.+. +-+.+-+|.-||  ..++........             +......+.-  ...|+.+++..+|.+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i-------------~dlrk~~~~e--~~~PDGm~ID~eG~L  225 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI-------------FDLRKSQPFE--SLEPDGMTIDTEGNL  225 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCccee-------------EEeccCCCcC--CCCCCcceEccCCcE
Confidence            4578887776554 556677787787  555543221110             1111111110  113556677788888


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEEE
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF  189 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~  189 (279)
                      .+++-..++|...|..+|+.+..+..+..     .+++++|-.. -..++
T Consensus       226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~-----qitsccFgGkn~d~~y  270 (310)
T KOG4499|consen  226 YVATFNGGTVQKVDPTTGKILLEIKLPTP-----QITSCCFGGKNLDILY  270 (310)
T ss_pred             EEEEecCcEEEEECCCCCcEEEEEEcCCC-----ceEEEEecCCCccEEE
Confidence            89888899999999999999999998876     8999999644 23444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.74  E-value=0.19  Score=39.23  Aligned_cols=159  Identities=14%  Similarity=0.147  Sum_probs=78.1

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .-.+.+..+.-++||+++++++.-....-||--....                 ..........|..+.|       +|+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-----------------~~~~r~~~~riq~~gf-------~~~  197 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-----------------QPHNRNSSRRIQSMGF-------SPD  197 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------------------EEEE--SSS-EEEEEE--------TT
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-----------------eEEccCccceehhcee-------cCC
Confidence            3446788888899999998887766666776542111                 0012223457777776       667


Q ss_pred             CcEEEEecCCCcEEEEEC-CCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +.+.+.+ ..|.|+.=+. ...+.-.. .........-.+..++|.+++...++|..|.+.+  -..+++..+.....  
T Consensus       198 ~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~--S~DgGktW~~~~~~--  271 (302)
T PF14870_consen  198 GNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV--STDGGKTWQKDRVG--  271 (302)
T ss_dssp             S-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE--ESSTTSS-EE-GGG--
T ss_pred             CCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccEEE--eCCCCccceECccc--
Confidence            6665544 7888887762 22221111 1011101111478899999988888887775432  33335555544332  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                        ..-...++.+.|.+ ...-++.| .+|.|.-|
T Consensus       272 --~~~~~n~~~i~f~~-~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  272 --ENVPSNLYRIVFVN-PDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             --TTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred             --cCCCCceEEEEEcC-CCceEEEC-CCcEEEEe
Confidence              23345688899977 55555554 57776544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.68  E-value=0.2  Score=38.70  Aligned_cols=132  Identities=12%  Similarity=0.055  Sum_probs=75.3

Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee-ec
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS-TL  214 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~-~~  214 (279)
                      ..++.|+.|..+| |.++++.............      .|..+...|+-+.+++-.|+.++++++..-........ ..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~------~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS------SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecc------eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccc
Confidence            3567889998888 8999983322222222111      58889999988888877779999999986321111000 00


Q ss_pred             -c----cccCCCCCceEEEE--EccCCCcEEEEEeCCCcEEEEecCCC-----eEEEEEeecCCCEEEEEEccC
Q 023672          215 -K----GNKEGQAGIMSAIA--FSPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       215 -~----~~~~~~~~~v~~~~--~sp~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~spd  276 (279)
                       .    ...-.....+..++  -...+...|+.+ ...+|.+|.....     .....+.. ...+.+++|.++
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~  149 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGN  149 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCC
Confidence             0    00011223344444  122133444444 4558888877653     34555553 467788888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.61  E-value=0.015  Score=42.27  Aligned_cols=106  Identities=11%  Similarity=0.100  Sum_probs=60.0

Q ss_pred             CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEE
Q 023672           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (279)
Q Consensus        72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (279)
                      +..+++|+.+|.|.+|.........+                ......+.+.+.      +....++.+..+++.|+.|+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d----------------~~~s~~e~i~~~------Ip~~~~~~~~c~~~~dg~ir  127 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSD----------------RVCSGEESIDLG------IPNGRDSSLGCVGAQDGRIR  127 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHH----------------hhhcccccceec------cccccccceeEEeccCCcee
Confidence            45688999999999999873221111                111111122111      11234556888999999999


Q ss_pred             EEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-E--ecCCeEEEEEccC
Q 023672          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A--GYNKSVRVFDVHR  203 (279)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~--~~d~~i~~~d~~~  203 (279)
                      .|++.-.+.+.....+...    ++.....+..++++. +  +.|..++.|++..
T Consensus       128 ~~n~~p~k~~g~~g~h~~~----~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  128 ACNIKPNKVLGYVGQHNFE----SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccCceeeeeccccCC----CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9999877665554444310    233333344444444 3  4666666776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.54  E-value=0.18  Score=43.32  Aligned_cols=116  Identities=16%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  143 (279)
                      .-+.-+.-++.-++-+....+.|||...+.....                -.....+.|.++.|     ...|+++.+++
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~----------------~~f~~~~~I~dLDW-----tst~d~qsiLa   91 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE----------------ESFSEDDPIRDLDW-----TSTPDGQSILA   91 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe----------------eeecCCCceeecee-----eecCCCCEEEE
Confidence            3344444444333444455799999987653221                22345678999999     55899999999


Q ss_pred             ecCCCcEEEEECC-----C----CeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672          144 TTRDHPIHLWDAT-----T----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       144 ~~~d~~i~i~d~~-----~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~  203 (279)
                      .+..+.|.+|--.     .    -..+..+.......  .+|.+..|.++|.+++ |.++.+.|+|-.-
T Consensus        92 VGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~  157 (631)
T PF12234_consen   92 VGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDKWL  157 (631)
T ss_pred             EEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECCCc
Confidence            9999999988542     1    12333333222111  1678899999986655 4456777776543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.51  E-value=0.29  Score=38.51  Aligned_cols=165  Identities=12%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEE
Q 023672           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (279)
Q Consensus        73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (279)
                      +.|.+-+.||++.-..+.............            ......++..-      .+....+..++.-+..|.|+-
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~------------F~~~~dp~f~~------~~~~~~~~~~~F~Sy~G~v~~  209 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKV------------FDPDDDPLFEH------PAYSRDGGRLYFVSYEGNVYS  209 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEE------------SSTTTS-B-S--------EEETTTTEEEEEBTTSEEEE
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccc------------cCCCCcccccc------cceECCCCeEEEEecCCEEEE
Confidence            457778889999888887433221111111            11111111111      011223445555778888888


Q ss_pred             EECCCCee--eEEEeccCccc-----cccceeeEEECCCCCEEEE----ec-----CC--eEEEEEccCCCCceeeeeec
Q 023672          153 WDATTGLL--RCTYRAYDAVD-----EITAAFSVAFNPTGTKIFA----GY-----NK--SVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       153 ~d~~~~~~--~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~----~~-----d~--~i~~~d~~~~~~~~~~~~~~  214 (279)
                      -|+.....  ...+......+     .++.-.-+++++..+.|++    +.     |+  .|.++|+.+.    +.+..+
T Consensus       210 ~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri  285 (342)
T PF06433_consen  210 ADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARI  285 (342)
T ss_dssp             EEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEE
T ss_pred             EeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEE
Confidence            88865532  22222211100     0113345788877665553    21     22  4777788774    333333


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecCCCeEEEEEeec
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      .     -..++.++..+.++..+|++. ..++.+.+||..+|+++.++..-
T Consensus       286 ~-----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  286 P-----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             E-----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             e-----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            1     123577999999666677665 45789999999999999988854

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.50  E-value=0.1  Score=44.69  Aligned_cols=107  Identities=10%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC--CCCCEEE-EecCCeEEEEEcc-----CCCCce
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIF-AGYNKSVRVFDVH-----RPGRDF  208 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~-~~~d~~i~~~d~~-----~~~~~~  208 (279)
                      -++..++-+....+.|||.+.+.....-..    .....|.++.|.  |+++.++ +|..+.|.+|--.     ..+..+
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w  115 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF----SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW  115 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeee----cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence            343444444455799999998875444333    111278899885  6777666 7889999888542     212222


Q ss_pred             eeeeecccccCCCC-CceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          209 EKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       209 ~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      ..+..+..  ..++ .+|.+..|.+ +|.+++.+  ++.+.|+|-
T Consensus       116 ~~i~~i~i--~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  116 APIRKIDI--SSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             ceeEEEEe--ecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence            22222211  2333 5789999999 87665544  356888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.47  E-value=0.0048  Score=53.52  Aligned_cols=181  Identities=10%  Similarity=0.038  Sum_probs=98.0

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCC--CccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .++|..+.|-.++|.. +...++  -.-|.+.|||++-  |++..            ..........+..+.-+.|+|. 
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~------------~l~v~~~~p~gs~~~~V~wcp~-  191 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP------------QLEVTPITPYGSDPQLVSWCPI-  191 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc------------ceEEeecCcCCCCcceeeeccc-
Confidence            4667788888888854 322333  3336788998863  22111            1112233345566677888775 


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc------cccceeeEEECCCCCEEEE-ecCCeEEEEEccCC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD------EITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRP  204 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~  204 (279)
                         -++..++..+-.++.|++.+..+... ..+..|....      ..+.+.--..+|||..++. ..||.++.|.+.-.
T Consensus       192 ---~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  192 ---AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             ---ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence               34556788888899999887765432 2222232200      0001111237899999985 49999998887532


Q ss_pred             C-CceeeeeecccccCCCCC-ceEEEEEccC------CC--cEEEEEeC-CCcEEEEecCCCeEE
Q 023672          205 G-RDFEKYSTLKGNKEGQAG-IMSAIAFSPT------HT--GMLAIGSY-SQTSAIYREDNMELL  258 (279)
Q Consensus       205 ~-~~~~~~~~~~~~~~~~~~-~v~~~~~sp~------~~--~~l~~~~~-dg~i~~wd~~~~~~~  258 (279)
                      + ....+....    +.|.. +-.|.-|..+      -+  .++++++. +..+++|.-..++|+
T Consensus       268 g~~~~rclhew----kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  268 GKIVHRCLHEW----KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccccHhhhhcc----CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            2 122232222    34442 2222223220      11  13444443 445999998877776

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.46  E-value=0.34  Score=38.84  Aligned_cols=174  Identities=16%  Similarity=0.171  Sum_probs=79.1

Q ss_pred             EEccCCCeEEEeeC-CC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672           67 KWSPDGSSFLTSSE-DK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (279)
Q Consensus        67 ~~~~~~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  143 (279)
                      +|.+||+.|+.++. ||  .+.+.|+.+++..+...                 ..+......       .++|+++.++-
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-----------------g~g~~~~g~-------~~s~~~~~~~Y   97 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-----------------GPGDNTFGG-------FLSPDDRALYY   97 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE--------------------SS-B-TTT--------EE-TTSSEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-----------------CCCCCccce-------EEecCCCeEEE
Confidence            56788977665444 55  45666777765432211                 111111111       22566677665


Q ss_pred             ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEE--CCCCCEEEEe----cC-------------------CeEEE
Q 023672          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----YN-------------------KSVRV  198 (279)
Q Consensus       144 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~----~d-------------------~~i~~  198 (279)
                      ......|+-.|+++.+....+..+..     .+-...|  +.++..++..    .|                   ..|.-
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~-----~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~  172 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDD-----WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT  172 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TT-----EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcc-----cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence            55566888899999887766666654     3333444  4456665521    11                   23555


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CC-cEEEEecCC-CeEEEEEeecC--CCEEEE
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQ-TSAIYREDN-MELLYVLHGQE--GGVTHV  271 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg-~i~~wd~~~-~~~~~~~~~~~--~~v~~~  271 (279)
                      .|+.++ +. +.+  +     .....+..+.|+|.+..+|+-|-+   +. .-+||-+++ +.....+..+.  ..+..=
T Consensus       173 idl~tG-~~-~~v--~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  173 IDLKTG-ER-KVV--F-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             EETTT---E-EEE--E-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred             EECCCC-ce-eEE--E-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence            566652 11 111  1     124467789999977766666543   11 125665543 22222222222  234444


Q ss_pred             EEccCCC
Q 023672          272 SKLSSAY  278 (279)
Q Consensus       272 ~~spdg~  278 (279)
                      -|.|||.
T Consensus       244 fw~~DG~  250 (386)
T PF14583_consen  244 FWVPDGS  250 (386)
T ss_dssp             EE-TTSS
T ss_pred             cccCCCC
Confidence            5777775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.44  E-value=0.27  Score=37.46  Aligned_cols=133  Identities=15%  Similarity=0.051  Sum_probs=73.2

Q ss_pred             cccCCCCcEEEEec---CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEE-ccCCCC
Q 023672          132 SASDPTSCVFASTT---RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFD-VHRPGR  206 (279)
Q Consensus       132 ~~~~~~~~~l~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d-~~~~~~  206 (279)
                      .++++++..++...   ....+.++..  +........ ..     .+...+|++++...+.. .+...+++. ...+..
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-g~-----~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-GG-----SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-CC-----ccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            35688888776655   2334555443  333333221 11     56778999998887765 556666663 222111


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe---CCCcEEEEecC---CC------eEEEEEeecCCCEEEEEEc
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYRED---NM------ELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~---~~------~~~~~~~~~~~~v~~~~~s  274 (279)
                      ..... ..    ..-...|.++.+|| +|..++...   .++.|.+--+.   .+      .++.........+.+++|.
T Consensus       101 ~~~~v-~~----~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  101 EPVEV-DW----PGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             eeEEe-cc----cccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            11111 11    11112799999999 777666554   34666666442   23      1122222334578999999


Q ss_pred             cCCC
Q 023672          275 SSAY  278 (279)
Q Consensus       275 pdg~  278 (279)
                      +++.
T Consensus       175 ~~~~  178 (253)
T PF10647_consen  175 DDST  178 (253)
T ss_pred             CCCE
Confidence            9874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.33  Score=38.09  Aligned_cols=150  Identities=15%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             EEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672           66 IKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (279)
Q Consensus        66 ~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  144 (279)
                      -.|.++.. ++.+--..+.|.-|+..++..                   ........+....      .++..+ .|+++
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------------------~~~~~p~~~~~~~------~~d~~g-~Lv~~   83 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-------------------RVFPSPGGFSSGA------LIDAGG-RLIAC   83 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-------------------EEEECCCCcccce------eecCCC-eEEEE
Confidence            34667666 444556677888888875532                   1111122222221      223344 34433


Q ss_pred             cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-----------CCeEEEEEccCCCCceeeee
Q 023672          145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-----------NKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----------d~~i~~~d~~~~~~~~~~~~  212 (279)
                        +.-+.+++.+++..+..+............+.+...|+|.+.+.. .           -|.++.+|. . +...+.. 
T Consensus        84 --~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~-  158 (307)
T COG3386          84 --EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLL-  158 (307)
T ss_pred             --ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEee-
Confidence              234666777666553333322222222366788999999988854 3           133444443 1 2222211 


Q ss_pred             ecccccCCCCCceEEEEEccCCC-cEEEEEeCCCcEEEEecC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHT-GMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~-~~l~~~~~dg~i~~wd~~  253 (279)
                            ..+-...+.++||| ++ .++++=+..+.|.-|++.
T Consensus       159 ------~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         159 ------DDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ------cCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecC
Confidence                  23334567899999 56 455555556778877764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.41  E-value=0.42  Score=39.33  Aligned_cols=54  Identities=19%  Similarity=0.153  Sum_probs=41.1

Q ss_pred             CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec-CCCEEEEEEccC
Q 023672          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-EGGVTHVSKLSS  276 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~spd  276 (279)
                      .+++..++.|| ++.++|.-..+|.+.+.+..-.+.+..+... ......|.|.-+
T Consensus       216 ~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  216 DGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             CCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            35799999999 9999999999999999887666666665543 345677777654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.40  E-value=0.36  Score=38.33  Aligned_cols=146  Identities=11%  Similarity=0.126  Sum_probs=78.8

Q ss_pred             eeecCCCceEEEEeeCcccccCC----CCcEEEEecC----------CCcEEEEECCCC----eeeEEEeccCccccccc
Q 023672          114 LVVTEGESVYDFCWFPHMSASDP----TSCVFASTTR----------DHPIHLWDATTG----LLRCTYRAYDAVDEITA  175 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~l~s~~~----------d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~  175 (279)
                      +.....+.+.+++..    .+..    ...+|+.|..          .|.|.++++...    ..+..+....   ...+
T Consensus        18 ~~l~~~E~~~s~~~~----~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~   90 (321)
T PF03178_consen   18 FELEPNEHVTSLCSV----KLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE---VKGP   90 (321)
T ss_dssp             EEEETTEEEEEEEEE----EETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE---ESS-
T ss_pred             EECCCCceEEEEEEE----EEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe---ecCc
Confidence            444455566655431    2222    2457777642          288999999884    1122111111   1127


Q ss_pred             eeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-
Q 023672          176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-  254 (279)
Q Consensus       176 v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-  254 (279)
                      |++++--  +..++++.++.|.+|++.... .+......     .....+.++....   .+++.|..-..+.++..+. 
T Consensus        91 V~ai~~~--~~~lv~~~g~~l~v~~l~~~~-~l~~~~~~-----~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   91 VTAICSF--NGRLVVAVGNKLYVYDLDNSK-TLLKKAFY-----DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEE  159 (321)
T ss_dssp             EEEEEEE--TTEEEEEETTEEEEEEEETTS-SEEEEEEE------BSSSEEEEEEET---TEEEEEESSSSEEEEEEETT
T ss_pred             ceEhhhh--CCEEEEeecCEEEEEEccCcc-cchhhhee-----cceEEEEEEeccc---cEEEEEEcccCEEEEEEEcc
Confidence            7777766  344777888999999999743 22222222     1122566666544   5888888878888775443 


Q ss_pred             CeEEEEEee--cCCCEEEEEEccCC
Q 023672          255 MELLYVLHG--QEGGVTHVSKLSSA  277 (279)
Q Consensus       255 ~~~~~~~~~--~~~~v~~~~~spdg  277 (279)
                      ...+..+..  ...+++++.|-+|+
T Consensus       160 ~~~l~~va~d~~~~~v~~~~~l~d~  184 (321)
T PF03178_consen  160 NNKLILVARDYQPRWVTAAEFLVDE  184 (321)
T ss_dssp             TE-EEEEEEESS-BEEEEEEEE-SS
T ss_pred             CCEEEEEEecCCCccEEEEEEecCC
Confidence            332333322  23357777776554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.37  E-value=0.29  Score=37.05  Aligned_cols=181  Identities=9%  Similarity=0.099  Sum_probs=104.9

Q ss_pred             CceEEEEEccCCCeEEEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ..--++.|..++.++-+.+.-|  .|+.+|+.+++..........           .++.  .++.+           ++
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-----------~FgE--Git~~-----------~d  100 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-----------YFGE--GITIL-----------GD  100 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------------EE--EEEEE-----------TT
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----------ccce--eEEEE-----------CC
Confidence            3455788877888777777766  688999998765322211110           0000  01100           22


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      ++....-.++...+||..+-+.+..+....      .=+.++  .+++.|+.+ ....++.+|..+- +....+..... 
T Consensus       101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~-  170 (264)
T PF05096_consen  101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDN-  170 (264)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EET-
T ss_pred             EEEEEEecCCeEEEEccccceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEEC-
Confidence            233333457888999999998888887654      335666  456666655 7889999998762 22222211100 


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee------------c---CCCEEEEEEccCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG------------Q---EGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------------~---~~~v~~~~~spdg~  278 (279)
                       ...-..++-+.|-  +|.+.|-.=....|...|..+|+.+..+..            +   .+-.+++|+.|.+.
T Consensus       171 -g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~  243 (264)
T PF05096_consen  171 -GRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD  243 (264)
T ss_dssp             -TEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred             -CEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence             1112346667775  567777776777888999999998876631            0   23578999988653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.35  E-value=0.42  Score=39.56  Aligned_cols=127  Identities=15%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-------EEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-------KIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      +..|.....+.-.|++.|+.+.....+..      + -+.|.|..+       .-++| .+..|.-.|.+..+..+....
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~dd------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDD------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCc------c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            34456667788889999999999888874      4 578888632       12245 788888888887553333221


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .-.   -.......+..-.  ...+++.|+..|.|++||.-.-+....+++....|..+..+.+|++
T Consensus       556 sKd---Y~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~  617 (776)
T COG5167         556 SKD---YKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH  617 (776)
T ss_pred             ehh---ccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE
Confidence            110   0111223333322  4568999999999999996554555566777777888888888763

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.33  E-value=0.021  Score=29.58  Aligned_cols=31  Identities=13%  Similarity=0.208  Sum_probs=25.9

Q ss_pred             CceEEEEEccCC---CeEEEeeCCCeEEEEeCCC
Q 023672           61 NFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPE   91 (279)
Q Consensus        61 ~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~   91 (279)
                      ++|.++.|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999844   5888888889999999984

It contains a characteristic DLL sequence motif.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.28  E-value=0.00045  Score=55.45  Aligned_cols=128  Identities=16%  Similarity=0.240  Sum_probs=90.2

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      .+.+.-++.++.+..+..||- .++.........      ....++|..++..++ .. ..+.+.+||+.+.     ...
T Consensus        43 ~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg------~aldm~wDkegdvlavlAek~~piylwd~n~e-----ytq  110 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDK-AGQVILELNPTG------KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE-----YTQ  110 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhh-hcceecccCCch------hHhhhhhccccchhhhhhhcCCCeeechhhhh-----hHH
Confidence            455666888888888999994 444444444333      455788988887776 34 8899999999862     111


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+... ..|...  -+.|++ +...++.|...|.+.|++..+.+.+-..-.|...+++++|.+.++
T Consensus       111 qLE~g-g~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  111 QLESG-GTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             HHhcc-CcchHH--HHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce
Confidence            22111 112222  278999 999999999999999999998887666655888889999988764

>PHA02713 hypothetical protein; Provisional

Probab=96.28  E-value=0.38  Score=41.36  Aligned_cols=104  Identities=9%  Similarity=0.128  Sum_probs=52.5

Q ss_pred             cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC------CeEEEEEccCCCCceeeeeecccccCCC
Q 023672          149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN------KSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (279)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~  221 (279)
                      .+..||..+.+-...-.......   . .+++.. ++++.+ .|.+      ..+..||..+ ...+.....+    ...
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~---~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~-~~~W~~~~~m----~~~  502 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTI---R-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNT-YNGWELITTT----ESR  502 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccc---c-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCC-CCCeeEcccc----Ccc
Confidence            47778887765432222211100   1 122222 344444 3433      2467888876 1123333233    222


Q ss_pred             CCceEEEEEccCCCcEEEEEeCCC--cEEEEecCCCeEEEEEeecC
Q 023672          222 AGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~  265 (279)
                      ......+.+   ++.+.++|+.++  .+..||..+.+-....+.|.
T Consensus       503 r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        503 LSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             cccceeEEE---CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            222333333   678999999888  78889988776444444443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.12  Score=46.64  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=74.9

Q ss_pred             CCCCcEE--EEecCCCcEEEEECCCCeeeE-----EEeccC-ccccccceeeEEECCCCC--EEEEecCCeEEEEEccCC
Q 023672          135 DPTSCVF--ASTTRDHPIHLWDATTGLLRC-----TYRAYD-AVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHRP  204 (279)
Q Consensus       135 ~~~~~~l--~s~~~d~~i~i~d~~~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~--~l~~~~d~~i~~~d~~~~  204 (279)
                      .+|+...  +..+.+-.|..||+++-..-.     .+..+. .........++.|+|.-.  .+++..|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            4454433  333444478899997532111     111111 111122456788998743  233448999999887642


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec----CCCEEEEEEc
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVSKL  274 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s  274 (279)
                      ....   ..     .......++++|+| .|..++.|-..|++.-|-. +++....+...    ...|.++.|-
T Consensus       189 ~~~v---~s-----~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  189 AQNV---TS-----FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhh---cc-----cCcccceeeEEecc-ccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence            1111   11     12245689999999 9999999999999988864 34433333322    2467787774

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.19  E-value=0.66  Score=39.27  Aligned_cols=168  Identities=11%  Similarity=0.115  Sum_probs=86.4

Q ss_pred             CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-------
Q 023672           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-------  145 (279)
Q Consensus        73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-------  145 (279)
                      ..++.++.++.|.-+|.++++...........               ..-..+.-.|.   +. + ..++.++       
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~---------------~~~~~i~ssP~---v~-~-~~v~vg~~~~~~~~  170 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV---------------PPGYTMTGAPT---IV-K-KLVIIGSSGAEFFA  170 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc---------------CcceEecCCCE---EE-C-CEEEEecccccccc
Confidence            57778888999999999988664332111000               00000111110   01 1 2333433       


Q ss_pred             --CCCcEEEEECCCCeeeEEEeccCccccc---------------cce-eeEEECCCCCEEEEe-cCC------------
Q 023672          146 --RDHPIHLWDATTGLLRCTYRAYDAVDEI---------------TAA-FSVAFNPTGTKIFAG-YNK------------  194 (279)
Q Consensus       146 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~-~d~------------  194 (279)
                        .++.|.-+|..+|+.+..+.........               ..+ ...++.+.+..++.+ .++            
T Consensus       171 ~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~  250 (488)
T cd00216         171 CGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPG  250 (488)
T ss_pred             CCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCC
Confidence              4678899999999988877653210000               001 124455555555544 443            


Q ss_pred             ------eEEEEEccCCCCceeeeeecccc---cCCCCCceEEEEEccCCC---cEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          195 ------SVRVFDVHRPGRDFEKYSTLKGN---KEGQAGIMSAIAFSPTHT---GMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       195 ------~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                            .|.-+|..++....+ .......   ......++. ......++   ..++.++.+|.+...|.++|+.+-...
T Consensus       251 ~~~~~~~l~Ald~~tG~~~W~-~~~~~~~~~~~~~~s~p~~-~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         251 DNLYTDSIVALDADTGKVKWF-YQTTPHDLWDYDGPNQPSL-ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCceeeEEEEcCCCCCEEEE-eeCCCCCCcccccCCCCeE-EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence                  688889988532222 1111000   001111111 01111123   267788889999999999999876543

The alignment model contains an 8-bladed beta-propeller.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.18  E-value=0.84  Score=40.39  Aligned_cols=91  Identities=15%  Similarity=0.273  Sum_probs=57.0

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCC-ccc------cccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-GIS------YDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .-.|..|.++|+|++|+..+..| |.|-.+... ...      .....|....-...   .........|..+.|+|.  
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~~~~~~~~i~qv~WhP~--  157 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FFTSNSSLEIKQVRWHPW--  157 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---hccCCCCceEEEEEEcCC--
Confidence            34688899999999999888765 445454321 100      00111111110000   011233457899999997  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCC
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTG  158 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~  158 (279)
                        ++++.+|+.-..|+++++||+...
T Consensus       158 --s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  158 --SESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             --CCCCCeEEEEecCCEEEEEecCCC
Confidence              667888999999999999999764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.97  E-value=0.32  Score=35.51  Aligned_cols=105  Identities=11%  Similarity=0.189  Sum_probs=62.2

Q ss_pred             EEEEecCCCcEEEEECCC--CeeeEEEeccCccccccceeeEEECCCCCEEEEe----cCC---eEEEE-EccCC---CC
Q 023672          140 VFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNK---SVRVF-DVHRP---GR  206 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~---~i~~~-d~~~~---~~  206 (279)
                      .|..+.....|.+|++.+  .+....+..-+      .|..+.++..|+++++-    ...   .+|+| +.+..   ..
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~  103 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVG------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS  103 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchh------heeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence            444446677899999983  35566666554      88899999999999963    123   56665 22221   11


Q ss_pred             ceeeeeeccc-----cc------------CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          207 DFEKYSTLKG-----NK------------EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       207 ~~~~~~~~~~-----~~------------~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      +...  .+.+     ..            -.-..++.+++..|..|++|+. + ++++.||.+..
T Consensus       104 ~v~v--RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~  164 (215)
T PF14761_consen  104 PVRV--RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKY  164 (215)
T ss_pred             cEEE--EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEE
Confidence            1110  0000     00            0113467788888866666654 3 56788888753

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.88  E-value=0.62  Score=37.97  Aligned_cols=67  Identities=13%  Similarity=0.128  Sum_probs=31.5

Q ss_pred             ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeeccccc-----------CCCCCceEEEEEccCCCcEE-EE
Q 023672          175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK-----------EGQAGIMSAIAFSPTHTGML-AI  240 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~sp~~~~~l-~~  240 (279)
                      -|+.|.+|.|.++|+ +. ..|.|+.||+..+..+...-+......           ..-.+...-+..|. +|..| +|
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~-DGkRlYvT  391 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL-DGKRLYVT  391 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T-TSSEEEEE
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc-CCeEEEEE
Confidence            578999999999999 55 899999999998655443332221110           01123456788888 55544 44


Q ss_pred             Ee
Q 023672          241 GS  242 (279)
Q Consensus       241 ~~  242 (279)
                      .|
T Consensus       392 nS  393 (461)
T PF05694_consen  392 NS  393 (461)
T ss_dssp             --
T ss_pred             ee
Confidence            43

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.68  E-value=0.062  Score=39.23  Aligned_cols=103  Identities=8%  Similarity=0.012  Sum_probs=55.8

Q ss_pred             CcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEE-ECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeec
Q 023672          138 SCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVA-FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +..++.|+.+|.|.+|+...- ...........     .+-++. --.++.+..++ .|+.|+.|+.... +   .....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-----~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k---~~g~~  140 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-----SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-K---VLGYV  140 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccc-----cceeccccccccceeEEeccCCceeeeccccC-c---eeeee
Confidence            447889999999999987621 11111111111     222221 12233344555 9999999999863 1   11111


Q ss_pred             ccccCCCC-CceEEEEEccCCCcEEEEE--eCCCcEEEEecCC
Q 023672          215 KGNKEGQA-GIMSAIAFSPTHTGMLAIG--SYSQTSAIYREDN  254 (279)
Q Consensus       215 ~~~~~~~~-~~v~~~~~sp~~~~~l~~~--~~dg~i~~wd~~~  254 (279)
                          ..|. .++..+..+. .+.+++.+  |.|..++.|++..
T Consensus       141 ----g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  141 ----GQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ----ccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence                3343 3444444444 55566666  6677777777653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.67  E-value=0.94  Score=38.29  Aligned_cols=126  Identities=11%  Similarity=0.194  Sum_probs=70.7

Q ss_pred             CCCCceEEEEEccC----CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           58 IPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        58 ~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      |.-..|.++.|.|-    ...|+.......|.||.+.......           .+....-...-+++.   ...|....
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~-----------~K~l~sQtcEi~e~~---pvLpQGCV  119 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTER-----------NKLLMSQTCEIREPF---PVLPQGCV  119 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccc-----------ccceeeeeeeccCCc---ccCCCccc
Confidence            34456999999984    2245555557789999986322111           011111111111111   11233344


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccC
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR  203 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~  203 (279)
                      |+|....|+.-.....-.++++...  +....++..+      .|.|.+|.+||+.|+++  ..-.-++||-..
T Consensus       120 WHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G------~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  120 WHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSG------LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCc------eEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            5666777776655544345666543  3334444333      79999999999888754  555667888654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.63  E-value=0.55  Score=37.47  Aligned_cols=102  Identities=15%  Similarity=0.067  Sum_probs=56.5

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC---CCcEEEEEeCC-------
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS-------  244 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~l~~~~~d-------  244 (279)
                      ..+.|+|.|+|+++++-..|.|++++...  .....+..+.............++++|+   ++.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g--~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDG--SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTT--EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCC--cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            45789999999888877899999999322  2112222222223344567899999992   35555555432       


Q ss_pred             -CcEEEEecCCC-------eE-EEEEee---cCCCEEEEEEccCCC
Q 023672          245 -QTSAIYREDNM-------EL-LYVLHG---QEGGVTHVSKLSSAY  278 (279)
Q Consensus       245 -g~i~~wd~~~~-------~~-~~~~~~---~~~~v~~~~~spdg~  278 (279)
                       ..|.-|....+       +. +..+..   ....-..|+|.|||+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~  126 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK  126 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc
Confidence             23433443332       11 222232   234567799999984

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.56  E-value=0.85  Score=37.23  Aligned_cols=130  Identities=17%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             CCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC--CCCCEEEE--ecCCeEEEEEc-cCCCCceeeeeecccc---
Q 023672          146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIFA--GYNKSVRVFDV-HRPGRDFEKYSTLKGN---  217 (279)
Q Consensus       146 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~--~~d~~i~~~d~-~~~~~~~~~~~~~~~~---  217 (279)
                      ...++.+||+.+.+.++++.......   .+.-+.|.  |+..+-++  ...++|..|-- ..+.-..+....+...   
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~---~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQ---MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEE---EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCC---ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence            35689999999999999998765311   34455664  55555443  35555555544 3322222222222111   


Q ss_pred             ----------cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC---eEEEEEee----------------cCCCE
Q 023672          218 ----------KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLHG----------------QEGGV  268 (279)
Q Consensus       218 ----------~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~----------------~~~~v  268 (279)
                                +..-..-|+.|.+|.|+..+.++.=.+|.|+.||+...   +++.++.-                -.+..
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP  376 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP  376 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence                      01113457899999955555556667999999999753   33333321                11234


Q ss_pred             EEEEEccCCC
Q 023672          269 THVSKLSSAY  278 (279)
Q Consensus       269 ~~~~~spdg~  278 (279)
                      .-|..|-||+
T Consensus       377 qMvqlS~DGk  386 (461)
T PF05694_consen  377 QMVQLSLDGK  386 (461)
T ss_dssp             --EEE-TTSS
T ss_pred             CeEEEccCCe
Confidence            6688888886

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.52  E-value=1.4  Score=37.75  Aligned_cols=31  Identities=10%  Similarity=0.123  Sum_probs=25.6

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      .+.+++.++.+|.++.+|.++|+.+..++..
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            3457777888999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.50  E-value=0.19  Score=37.27  Aligned_cols=68  Identities=10%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEE-eccCcc--------ccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAV--------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~  203 (279)
                      .++.++++.+.+|.+++||+.+++.+..- ....-.        .....|..+.++.+|.-+++-.+|..+.|+..-
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            36778999999999999999988764332 100000        122367888899888877765778889998875

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.42  E-value=0.41  Score=39.15  Aligned_cols=106  Identities=11%  Similarity=0.033  Sum_probs=60.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCce-EEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~  133 (279)
                      .+......+.++..+|++++.|+...-|.|.++|+.++....-.+.....     ....+.......- ......+   .
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-----qc~wi~~~~~~~~~~~~~~~~---~  373 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-----QCGWIEVPEEGDRDRSNSNSP---K  373 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-----eEEEEEeeccccccccccccc---C
Confidence            44455667899999999998888888899999999987553322222110     0000000000000 0000000   0


Q ss_pred             cCC--CCcEEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672          134 SDP--TSCVFASTTRDHPIHLWDATTGLLRCTYRAYD  168 (279)
Q Consensus       134 ~~~--~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~  168 (279)
                      ..+  .--+++-+-.-|.|.||.+++|..+..+....
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k  410 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVGK  410 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence            000  01145556778999999999998887776543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=0.89  Score=34.92  Aligned_cols=121  Identities=10%  Similarity=0.105  Sum_probs=79.8

Q ss_pred             ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEE
Q 023672          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF  199 (279)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~  199 (279)
                      .+.++.|       +|+.+.|++......-.++=-..|+.+.+++...-.    ....|.+..++++.++- .++.+.++
T Consensus        87 nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          87 NVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             cccceee-------CCCcceEEEecCCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEEehhcceEEEE
Confidence            3666666       778888888777776667766779999888765532    34578888888888887 89999999


Q ss_pred             EccCCCCceeeee-ecccccCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          200 DVHRPGRDFEKYS-TLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       200 d~~~~~~~~~~~~-~~~~~~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .+........... .+.-....+ ....-.++|+| ....|..+-+-.-+.||.+.
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEe
Confidence            8876432211111 111111122 45678899999 56666666666666666554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.31  E-value=2.1  Score=38.57  Aligned_cols=180  Identities=13%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC-CCeEEEeeC----------CCeEEEEeCCCCcccccccccc
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSE----------DKTLRIFSLPENGISYDVNACS  102 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~  102 (279)
                      .-++++|..+-+.++.++...-  --.-.|.++.|..| +.++++|..          .|.|.||.+.+......     
T Consensus       750 s~l~vlD~nTf~vl~~hef~~~--E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~-----  822 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVLSSHEFERN--ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL-----  822 (1096)
T ss_pred             EEEEEecCCceeEEeecccccc--ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee-----
Confidence            3567778777776654322110  01124666678877 677877753          46677776664211110     


Q ss_pred             ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (279)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (279)
                                .....-.+.++++.-        -+|+++|  +....|++|+..+.+.++.-..+..     ++..+...
T Consensus       823 ----------v~e~~v~Gav~aL~~--------fngkllA--~In~~vrLye~t~~~eLr~e~~~~~-----~~~aL~l~  877 (1096)
T KOG1897|consen  823 ----------VAETVVKGAVYALVE--------FNGKLLA--GINQSVRLYEWTTERELRIECNISN-----PIIALDLQ  877 (1096)
T ss_pred             ----------eeeeeeccceeehhh--------hCCeEEE--ecCcEEEEEEccccceehhhhcccC-----CeEEEEEE
Confidence                      011111234444431        1565555  4567899999988755544433333     77888888


Q ss_pred             CCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       183 ~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      -.+..+++| .-+++.+...+.....+.....     .-+..+.+++.+-. + ..++.+..+|.+.+-..
T Consensus       878 v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-----D~~p~Wmtaveil~-~-d~ylgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  878 VKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-----DYNPNWMTAVEILD-D-DTYLGAENSGNLFTVRK  941 (1096)
T ss_pred             ecCcEEEEeeccceEEEEEEeccCCceEEeeh-----hhCccceeeEEEec-C-ceEEeecccccEEEEEe
Confidence            899999988 6777777766653323333322     34566778888765 3 34455556776666543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.14  E-value=1.2  Score=34.87  Aligned_cols=111  Identities=18%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeec
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +++|.++++++....+.-||.-...-...-+....     .|..|.|.|++.+.+.+..|.|+.=+.....   ......
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~---~~w~~~  224 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLARGGQIQFSDDPDDG---ETWSEP  224 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEETTTEEEEEE-TTEE---EEE---
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccCccc-----eehhceecCCCCEEEEeCCcEEEEccCCCCc---cccccc
Confidence            78999999888777777888643322222222222     8899999999988887799999988732211   221111


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      ..........+..++|.+ ++.+.++|+ .|.+ +.....|+
T Consensus       225 ~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTS
T ss_pred             cCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCc
Confidence            111112234588999999 777777665 4443 33444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.12  E-value=2.2  Score=37.84  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             ceeeEEECCCCCEEE-EecCCeEEEEEccC-CC---------Cceeeeeecc-c--ccCCCCCceEEEEEccC--CCcEE
Q 023672          175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHR-PG---------RDFEKYSTLK-G--NKEGQAGIMSAIAFSPT--HTGML  238 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~-~~---------~~~~~~~~~~-~--~~~~~~~~v~~~~~sp~--~~~~l  238 (279)
                      .|..+.++|+|.+++ +|. ..|.|..+-. .+         ....+..... .  ....+...|..+.|+|.  ++..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            688999999999998 555 4444444432 11         1112211111 0  11234567899999993  24678


Q ss_pred             EEEeCCCcEEEEecCCC
Q 023672          239 AIGSYSQTSAIYREDNM  255 (279)
Q Consensus       239 ~~~~~dg~i~~wd~~~~  255 (279)
                      +.-..|+++++||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            88888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.10  E-value=1.5  Score=35.85  Aligned_cols=114  Identities=13%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             CceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE--EEeccCccccccceeeEEECCCCCEEEEecCCeEE
Q 023672          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVR  197 (279)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~  197 (279)
                      ..+..+.+       .+++..++++ .+|.+. +....++.-.  .+...........+..+.|.+++..+++|.+|.+.
T Consensus       281 ~~l~~v~~-------~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~  351 (398)
T PLN00033        281 RRIQNMGW-------RADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILL  351 (398)
T ss_pred             cceeeeeE-------cCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            45555655       5677766655 455553 3344443110  12111110011257889999999998899888776


Q ss_pred             EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                      .-.  .+++.++.....    ..-....+.+.|.+ ++..+++| .+|.|.-|
T Consensus       352 ~s~--D~G~tW~~~~~~----~~~~~~ly~v~f~~-~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        352 RST--DGGKSWKRDKGA----DNIAANLYSVKFFD-DKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             EeC--CCCcceeEcccc----CCCCcceeEEEEcC-CCceEEEe-CCcEEEEe
Confidence            653  234444332211    22245678999977 66666655 57776544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.04  E-value=0.2  Score=25.75  Aligned_cols=40  Identities=15%  Similarity=0.047  Sum_probs=28.3

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      +..++++...++.|.++|..+++.+..+... .....++|+
T Consensus         3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~   42 (42)
T TIGR02276         3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS   42 (42)
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence            3344555556889999999999988888763 444666664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.00  E-value=0.49  Score=38.74  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             cceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEc-------------cCCCc-EE
Q 023672          174 TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS-------------PTHTG-ML  238 (279)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------------p~~~~-~l  238 (279)
                      ..+.+++.+|++++.++. .-|.|.++|+.++ .   .+...+.-..+.-+.+....-.             +.... ++
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~---vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-I---VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-h---hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            367899999999888876 6699999999873 2   2222211111111111111110             00011 33


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          239 AIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       239 ~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      +-+-.-|.|.||++++|..+..+...
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEEeC
Confidence            34566889999999999988877653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.97  E-value=1.2  Score=33.90  Aligned_cols=104  Identities=12%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee--ee
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY--ST  213 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~--~~  213 (279)
                      ++..|+.+.....|.++|..+.+....+...........++-+.|- +|...+-- ....|...|..++ .....+  ..
T Consensus       138 dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~  215 (264)
T PF05096_consen  138 DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSG  215 (264)
T ss_dssp             CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HH
T ss_pred             CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhH
Confidence            6778888877889999999988877777665443334456666665 45555533 6677777787773 222111  01


Q ss_pred             cccc------cCCCCCceEEEEEccCCCcEEEEEe
Q 023672          214 LKGN------KEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       214 ~~~~------~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      +...      .....+-.+.+++.|..+.+++||-
T Consensus       216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             hhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            1100      0111456889999996777788774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.85  E-value=1.6  Score=34.88  Aligned_cols=158  Identities=14%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .+.+.++.+.|++.+++++. .|.+..- .+.+..              .+.. ........++.+.+       .+++.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~--------------tW~~-~~~~~~~~l~~i~~-------~~~g~  227 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQT--------------AWTP-HQRNSSRRLQSMGF-------QPDGN  227 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCC--------------eEEE-eeCCCcccceeeeE-------cCCCC
Confidence            45678888888876665554 4544321 111100              0000 11122234555544       56676


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      .++.+ ..|.+.+=..+.+..-.....+.. .....+..+.+.|++..++++.+|.+.. .... ++..+.....    .
T Consensus       228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~-G~tW~~~~~~----~  299 (334)
T PRK13684        228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEI-TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDG-GKTWEKDPVG----E  299 (334)
T ss_pred             EEEEe-cCCEEEEccCCCCCccccccCCcc-ccccceeeEEEcCCCCEEEEcCCCeEEE-eCCC-CCCCeECCcC----C
Confidence            66654 456554322344432222221100 0111567899999888888888886653 3332 3333332111    1


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      .-....+.+.|.. ++..+++ +..|.|.-|+
T Consensus       300 ~~~~~~~~~~~~~-~~~~~~~-G~~G~il~~~  329 (334)
T PRK13684        300 EVPSNFYKIVFLD-PEKGFVL-GQRGVLLRYV  329 (334)
T ss_pred             CCCcceEEEEEeC-CCceEEE-CCCceEEEec
Confidence            1223577777776 5555554 5578877665

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.82  E-value=0.97  Score=36.08  Aligned_cols=113  Identities=17%  Similarity=0.180  Sum_probs=54.4

Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECCC---CCEEE-Ee-cC-------
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPT---GTKIF-AG-YN-------  193 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~-~~-~d-------  193 (279)
                      |..+++.|+++++++ ...|.|++++ ..+..   +..+. .-..........++++|+   ..+|+ +. ..       
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            334566888877665 5599999999 44443   22221 111122236789999995   23444 22 21       


Q ss_pred             -CeEEEEEccCCCCceeeeeecc---cccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          194 -KSVRVFDVHRPGRDFEKYSTLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       194 -~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                       ..|.-|.+............+.   ............+.|.| ++.++++.+..+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCC
Confidence             2344455543211222111111   11011223456799999 777777665433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.66  E-value=2  Score=34.94  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=33.1

Q ss_pred             ceeeEEECCCCCEEEE-ecC-------------------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC
Q 023672          175 AAFSVAFNPTGTKIFA-GYN-------------------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH  234 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~-~~d-------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  234 (279)
                      ....+.|.|+|.+.++ |..                   +.|.-+|...  ...+.+.      .++ .....++|+| .
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg--~~~e~~a------~G~-rnp~Gl~~d~-~  194 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG--GKLRVVA------HGF-QNPYGHSVDS-W  194 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC--CeEEEEe------cCc-CCCccceECC-C
Confidence            4678999999987663 311                   2333344432  2222211      232 3356899999 8


Q ss_pred             CcEEEEEe
Q 023672          235 TGMLAIGS  242 (279)
Q Consensus       235 ~~~l~~~~  242 (279)
                      +.++++-.
T Consensus       195 G~l~~tdn  202 (367)
T TIGR02604       195 GDVFFCDN  202 (367)
T ss_pred             CCEEEEcc
Confidence            88877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.65  E-value=1.9  Score=34.78  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=66.5

Q ss_pred             ccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCC
Q 023672          131 MSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~  206 (279)
                      .-+|.++|+.|+.++. ||  .+.+.|+.+++..+.......     ......++|+++.++ .-.+..++-.|+.+.. 
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-  113 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-  113 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEEETTT---
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCCeEEEEECCcCc-
Confidence            3466888876665544 44  678889999987665554332     233567788888876 5567789999998832 


Q ss_pred             ceeeeeecccccCCCCCceEEEEEcc-CCCcEEEEEeC----------------------CCcEEEEecCCCeEEEEEee
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSY----------------------SQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~~l~~~~~----------------------dg~i~~wd~~~~~~~~~~~~  263 (279)
                       ...+..+.      ...+-...|.. .++..++..-.                      ...|.--|+.+|+....+. 
T Consensus       114 -~~~vy~~p------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-  185 (386)
T PF14583_consen  114 -ERVVYEVP------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-  185 (386)
T ss_dssp             -EEEEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-
T ss_pred             -EEEEEECC------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-
Confidence             12222332      23343345542 14444433211                      1246666888887655544 


Q ss_pred             cCCCEEEEEEccC
Q 023672          264 QEGGVTHVSKLSS  276 (279)
Q Consensus       264 ~~~~v~~~~~spd  276 (279)
                      -..++..+.|||.
T Consensus       186 ~~~wlgH~~fsP~  198 (386)
T PF14583_consen  186 DTDWLGHVQFSPT  198 (386)
T ss_dssp             ESS-EEEEEEETT
T ss_pred             cCccccCcccCCC
Confidence            3456777777774

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.62  E-value=2.1  Score=35.71  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=34.7

Q ss_pred             eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc--cccccceeeEEECCCC
Q 023672          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTG  185 (279)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~  185 (279)
                      .|..++|.|++++|++--..|.|++++..++...........  .........|+++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345566788998777665569999998665432221111100  0012367899999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.57  E-value=2.8  Score=36.31  Aligned_cols=106  Identities=13%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             CCcEEEEecCCC------cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC-----eEEEEEccCC
Q 023672          137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-----SVRVFDVHRP  204 (279)
Q Consensus       137 ~~~~l~s~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-----~i~~~d~~~~  204 (279)
                      +|.+.++|+.++      ++..||..+++....-+......    -..++.- ++.+.++| .|+     +|..||..+.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----GFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----cceEEEE-CCEEEEECCccCCCccceEEEEcCCCC
Confidence            667777777554      57788988876543333222211    1123332 34444444 554     3778888873


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-----EEEEecCCCe
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNME  256 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-----i~~wd~~~~~  256 (279)
                      .  +..+...    ......+..+.+   ++.+.+.|+.||.     |..||..+.+
T Consensus       502 ~--W~~v~~m----~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  502 Q--WTMVAPM----TSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             c--eeEcccC----ccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc
Confidence            1  2222111    222222322333   6788888888874     7788876554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.56  E-value=0.068  Score=46.89  Aligned_cols=109  Identities=14%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             CcEEEEECC--CCeeeEEEeccCccccccceeeEEECC---CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672          148 HPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (279)
Q Consensus       148 ~~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  221 (279)
                      |.+.+||+.  .|+....+..+........+.-+.|.|   +..++.++ .++.+++..+.+...     ..+    .+|
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~----rsH  223 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLF----RSH  223 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-----HHH----Hhc
Confidence            568889886  354443333222111111344555555   44555567 788999888875211     111    235


Q ss_pred             CCceEEE-----------EEccCCCcEEEEEeCCCcEEEEec-----CCCeEEEEEeecCC
Q 023672          222 AGIMSAI-----------AFSPTHTGMLAIGSYSQTSAIYRE-----DNMELLYVLHGQEG  266 (279)
Q Consensus       222 ~~~v~~~-----------~~sp~~~~~l~~~~~dg~i~~wd~-----~~~~~~~~~~~~~~  266 (279)
                      ...+..+           ..|| ||..++.++.||.+++|.+     +.-.|+...+.|++
T Consensus       224 s~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  224 SQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            4433332           4789 9999999999999887765     33345666666763

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.52  E-value=0.95  Score=37.70  Aligned_cols=29  Identities=10%  Similarity=-0.110  Sum_probs=19.9

Q ss_pred             EEeeCcccccCCCCcEEEEecCCCcEEEE
Q 023672          125 FCWFPHMSASDPTSCVFASTTRDHPIHLW  153 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  153 (279)
                      +.|.-..+..++.|..++.++.+|.+.++
T Consensus       102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  102 VLFEVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             ceEEEEEEEecCCCceEEEecCCeeEEEE
Confidence            34444445668889999988888866544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.47  E-value=0.34  Score=36.02  Aligned_cols=72  Identities=10%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             ECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccC-------CCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          181 FNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE-------GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       181 ~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      +..++.++++ ..+|.+++||+.+........ .+.....       .....|..+.++. +|.-+++-+ +|..+.||.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence            4456667764 599999999999853222221 1111111       3456788999998 777777665 578899986


Q ss_pred             CCC
Q 023672          253 DNM  255 (279)
Q Consensus       253 ~~~  255 (279)
                      .-+
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.42  E-value=0.67  Score=38.42  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~  203 (279)
                      .+.++|.++..|-|++||--..+....++.-+.     .|..+..+.+|+++++.....+.+.|++-
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~-----aIk~idvta~Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-----AIKHIDVTANGKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCccccc-----ceeeeEeecCCcEEEEeecceEEEEeccc
Confidence            455899999999999999765555555555554     78899999999999988888888888863

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.38  E-value=1.2  Score=31.70  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=27.8

Q ss_pred             ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC
Q 023672          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT  157 (279)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~  157 (279)
                      .+..++|+|..+.- ..+.+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~-~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGP-NGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCC-CCceEEEEEcCCCeEEEEecCC
Confidence            68889999976532 2356788889999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=1.9  Score=40.00  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCC-CCcee--------------eeeecccccCCCCCceEEEEEccCCCcEEE
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRP-GRDFE--------------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLA  239 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~-~~~~~--------------~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~  239 (279)
                      .|.++....+|+.+++|.||.++=.-.... +.-.+              ....+......+..+|..+.... ...+|.
T Consensus       180 ~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY  258 (1311)
T KOG1900|consen  180 SVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILY  258 (1311)
T ss_pred             eEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceee
Confidence            788999889999999998885442222211 00000              01111111135677999999988 888999


Q ss_pred             EEeCCCcEEEEecCC
Q 023672          240 IGSYSQTSAIYREDN  254 (279)
Q Consensus       240 ~~~~dg~i~~wd~~~  254 (279)
                      +-++.|+|.+||+..
T Consensus       259 ~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  259 VLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeccCceEEEEEccC
Confidence            999999999999975

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.22  E-value=2.8  Score=34.94  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=24.2

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN   92 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~   92 (279)
                      ..-+.|+|.||+++|++--..|.|++++..++
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            34688999999987766654699999976543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.05  E-value=0.4  Score=24.56  Aligned_cols=33  Identities=12%  Similarity=0.143  Sum_probs=24.0

Q ss_pred             CCCcEEEE-ecCCCcEEEEECCCCeeeEEEeccC
Q 023672          136 PTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYD  168 (279)
Q Consensus       136 ~~~~~l~s-~~~d~~i~i~d~~~~~~~~~~~~~~  168 (279)
                      |+++.|++ ...++.|.++|..+++.+..+....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence            35555554 4457899999999998888877643

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=3  Score=34.36  Aligned_cols=124  Identities=8%  Similarity=0.129  Sum_probs=71.0

Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEec
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY  192 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (279)
                      .+.....++|.++.|       ++|.+.+|.--.+.+|.+++....+....+. +........|....|+.+ .-++.-.
T Consensus        60 Sfdm~d~G~I~SIkF-------SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i~  130 (657)
T KOG2377|consen   60 SFDMDDKGEIKSIKF-------SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFIT  130 (657)
T ss_pred             eeeecCCCceeEEEe-------ccCcceEEEEecCceEEEEecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEEe
Confidence            344555569999987       7889999999999999999974333222211 111112225788888876 4444335


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEe-CCCcEEEEecC
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGS-YSQTSAIYRED  253 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~-~dg~i~~wd~~  253 (279)
                      +..+-+|-.....+..+..       +.|...|.=..|.+ +... |++.+ ..+++.=+.++
T Consensus       131 ~~G~e~y~v~pekrslRlV-------ks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~  185 (657)
T KOG2377|consen  131 DQGIEFYQVLPEKRSLRLV-------KSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFR  185 (657)
T ss_pred             cCCeEEEEEchhhhhhhhh-------hhcccCccEEEEcc-ccceEeeeccccccccccEEEe
Confidence            5556777665432222222       34555666677777 4443 33333 33433334333

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.87  E-value=1.3  Score=29.75  Aligned_cols=111  Identities=13%  Similarity=0.169  Sum_probs=66.9

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCC--------eeeEEEeccCccccccceeeEE---ECC--CCCEEEEecCCeEEEEEc
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVA---FNP--TGTKIFAGYNKSVRVFDV  201 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~d~~i~~~d~  201 (279)
                      ......|+.++..++|.|++....        ..+..+....      .|++++   |.|  ....|+.|....+..||+
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------EITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC------ceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            334446788888899999987633        2344555444      555654   433  346777899999999999


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEcc---CCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP---THTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                      ..+...+.         +.-.+.|.++.+-.   ....+++.| .+..|.-||..-.+...+.
T Consensus        81 ~~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCchhhh---------hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence            87422111         12234577776632   123344444 4677888887655554443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.74  E-value=0.8  Score=32.64  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             ceEEEEEccC-----CCcEEEEEeCCCcEEEEecC
Q 023672          224 IMSAIAFSPT-----HTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       224 ~v~~~~~sp~-----~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .+.+++|||.     .+.+|++-+.++.|.||...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            7889999992     34578899999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.73  E-value=2.6  Score=32.87  Aligned_cols=54  Identities=11%  Similarity=0.087  Sum_probs=36.9

Q ss_pred             ceEEEEEccCCCcEEEEEeCCCcEEEEecCCC---eEEEEEe-ec--CCCEEEEEEcc--CCC
Q 023672          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLH-GQ--EGGVTHVSKLS--SAY  278 (279)
Q Consensus       224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~-~~--~~~v~~~~~sp--dg~  278 (279)
                      ....+++++ +|.++++--..+.|..|+..+.   +....+. ..  -.++.++.+.+  +|.
T Consensus       187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence            456788999 8999999999999999998762   1122222 12  24788898888  653

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.73  E-value=0.39  Score=24.27  Aligned_cols=29  Identities=24%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             CCCceEEEEEccCCCeEEE-eeCC--CeEEEE
Q 023672           59 PNNFLKGIKWSPDGSSFLT-SSED--KTLRIF   87 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t-~~~d--g~i~iw   87 (279)
                      ..+.-....|+|||+.|+- +..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3456778999999998874 4445  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.28  E-value=0.96  Score=38.96  Aligned_cols=40  Identities=18%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             ceEEEEEcc---CCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          224 IMSAIAFSP---THTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       224 ~v~~~~~sp---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .+.+++.++   ++..+|++.+.|+.+|+||+.+++++.+...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            344455544   2567899999999999999999999776643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.20  E-value=3.7  Score=32.91  Aligned_cols=96  Identities=14%  Similarity=0.031  Sum_probs=51.1

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      .++++.+.++++.++++..|.+++=.... +..........   ......+.++.+.| ++.++++| .+|.+. .....
T Consensus       216 ~l~~i~~~~~g~~~~vg~~G~~~~~s~d~-G~sW~~~~~~~---~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~  288 (334)
T PRK13684        216 RLQSMGFQPDGNLWMLARGGQIRFNDPDD-LESWSKPIIPE---ITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDG  288 (334)
T ss_pred             cceeeeEcCCCCEEEEecCCEEEEccCCC-CCccccccCCc---cccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCC
Confidence            78899999999988888778765322222 33333211100   01123578889998 77666554 567554 33333


Q ss_pred             CeEEEEEe---ecCCCEEEEEEccCC
Q 023672          255 MELLYVLH---GQEGGVTHVSKLSSA  277 (279)
Q Consensus       255 ~~~~~~~~---~~~~~v~~~~~spdg  277 (279)
                      ++.-....   .-......+.|..++
T Consensus       289 G~tW~~~~~~~~~~~~~~~~~~~~~~  314 (334)
T PRK13684        289 GKTWEKDPVGEEVPSNFYKIVFLDPE  314 (334)
T ss_pred             CCCCeECCcCCCCCcceEEEEEeCCC
Confidence            33222221   112245556655443

>PHA03098 kelch-like protein; Provisional

Probab=93.17  E-value=5.1  Score=34.48  Aligned_cols=106  Identities=8%  Similarity=0.059  Sum_probs=50.8

Q ss_pred             CCcEEEEecCC------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC--------CeEEEEEc
Q 023672          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN--------KSVRVFDV  201 (279)
Q Consensus       137 ~~~~l~s~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d--------~~i~~~d~  201 (279)
                      ++.+.+.|+.+      ..+..||+.+.+-...-......    .-.++.. -++.+++. |.+        ..+.+||.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~  463 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNP  463 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEE-ECCEEEEECCccCCCCCcccceEEEecC
Confidence            45566666632      35788998876543322111110    1112222 23444443 332        23888888


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~  256 (279)
                      .+..  +.......    ........+.  . ++.+++.|+.+     +.+.+||..+.+
T Consensus       464 ~~~~--W~~~~~~~----~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        464 VTNK--WTELSSLN----FPRINASLCI--F-NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCc--eeeCCCCC----cccccceEEE--E-CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            7631  22221111    1111112222  2 56777777754     468889887654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.12  E-value=1.6  Score=35.82  Aligned_cols=95  Identities=9%  Similarity=0.054  Sum_probs=57.3

Q ss_pred             ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      +|.++.|++|.+.+++- .+..|.+++............+.    +.....|...+|+. + .-++.-+..| +-+|-..
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c----k~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC----KTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh----ccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence            89999999999999987 89999999985421111111111    22344588999987 5 3444444344 5555543


Q ss_pred             C-CeEEEEEeecCCCEEEEEEccC
Q 023672          254 N-MELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       254 ~-~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      . .+.+...+.|.-.|.-..|.|+
T Consensus       141 pekrslRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccc
Confidence            2 2233444455555655556554

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.66  E-value=3.9  Score=31.77  Aligned_cols=117  Identities=12%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-------cCCeEEEEEccCCCCceeeeeeccccc-CC
Q 023672          149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------YNKSVRVFDVHRPGRDFEKYSTLKGNK-EG  220 (279)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~  220 (279)
                      .|.+||..+.+-...-..-.     ..|..+.|..+.+++++|       ....+..||+.+.     .+..+.... ..
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~-----G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-----~w~~~~~~~s~~   86 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGIS-----GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-----TWSSLGGGSSNS   86 (281)
T ss_pred             EEEEEECCCCEeecCCCCce-----EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-----eeeecCCccccc
Confidence            58899988776544332222     279999998766666654       2346888999862     222332211 12


Q ss_pred             CCCceEEEEEccCCC-cEEEEEe-CCC--cEEEEecCCCeEEEE-EeecCCCEEEEEEcc
Q 023672          221 QAGIMSAIAFSPTHT-GMLAIGS-YSQ--TSAIYREDNMELLYV-LHGQEGGVTHVSKLS  275 (279)
Q Consensus       221 ~~~~v~~~~~sp~~~-~~l~~~~-~dg--~i~~wd~~~~~~~~~-~~~~~~~v~~~~~sp  275 (279)
                      -.++|..+.+...+. .+.+.|. .+|  .|..||=.++..+.. .-.....|.++.+-|
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            346788888754344 4554544 333  377777666555443 222234556655443

>PHA02713 hypothetical protein; Provisional

Probab=91.91  E-value=7.8  Score=33.60  Aligned_cols=25  Identities=8%  Similarity=0.191  Sum_probs=17.0

Q ss_pred             CCcEEEEecCCC-----cEEEEECCCCeee
Q 023672          137 TSCVFASTTRDH-----PIHLWDATTGLLR  161 (279)
Q Consensus       137 ~~~~l~s~~~d~-----~i~i~d~~~~~~~  161 (279)
                      ++.+.+.|+.++     .+..||..+.+-.
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            566777777654     4788998876543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.83  E-value=4.7  Score=30.92  Aligned_cols=99  Identities=15%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      +-.|||..-+++...+.|--.|..+|+....--....     ....|..-|||...++-....|.-+|-++.  .++   
T Consensus        68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-----~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt---  137 (353)
T COG4257          68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-----SPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVT---  137 (353)
T ss_pred             ccCCCCceEEecCccccceecCCCCCceEEEecCCCC-----CCceEEECCCCCeeEecCcceeEEecCccc--ceE---
Confidence            4478888888888888898899999986554443333     556788899987766542225666666552  111   


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      ++.-..+..........|.+ .|.+.+++.
T Consensus       138 ~f~lp~~~a~~nlet~vfD~-~G~lWFt~q  166 (353)
T COG4257         138 RFPLPLEHADANLETAVFDP-WGNLWFTGQ  166 (353)
T ss_pred             EeecccccCCCcccceeeCC-CccEEEeec
Confidence            22222233345677889999 888888875

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.53  E-value=6.9  Score=32.21  Aligned_cols=96  Identities=9%  Similarity=-0.008  Sum_probs=54.0

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCcee--eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .+..+.|.+++..++++.+|.+..= ... +....  .+.....  ......+.++.|.+ ++..+++| .+|.+.... 
T Consensus       282 ~l~~v~~~~dg~l~l~g~~G~l~~S-~d~-G~~~~~~~f~~~~~--~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-  354 (398)
T PLN00033        282 RIQNMGWRADGGLWLLTRGGGLYVS-KGT-GLTEEDFDFEEADI--KSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-  354 (398)
T ss_pred             ceeeeeEcCCCCEEEEeCCceEEEe-cCC-CCcccccceeeccc--CCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-
Confidence            6789999999999988877776543 222 22111  1111110  11223588899988 77666555 567665543 


Q ss_pred             CCCeEEEEE---eecCCCEEEEEEccCC
Q 023672          253 DNMELLYVL---HGQEGGVTHVSKLSSA  277 (279)
Q Consensus       253 ~~~~~~~~~---~~~~~~v~~~~~spdg  277 (279)
                      ..|+.=...   ..-....+.+.|.+++
T Consensus       355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~  382 (398)
T PLN00033        355 DGGKSWKRDKGADNIAANLYSVKFFDDK  382 (398)
T ss_pred             CCCcceeEccccCCCCcceeEEEEcCCC
Confidence            333322222   2223467788877654

>PRK10115 protease 2; Provisional

Probab=91.45  E-value=5.9  Score=35.32  Aligned_cols=71  Identities=7%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             ceeeEEECCCCCEEEEe--cC----CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC----
Q 023672          175 AAFSVAFNPTGTKIFAG--YN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----  244 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~--~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d----  244 (279)
                      .+..+.++|++++|+.+  .+    ..|++.|+.++ ..+  ...+    .+   .-..++|++++..++++...+    
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg-~~l--~~~i----~~---~~~~~~w~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG-NWY--PELL----DN---VEPSFVWANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC-CCC--Cccc----cC---cceEEEEeeCCCEEEEEEecCCCCC
Confidence            45678899999998843  22    35888898763 111  0011    11   114689999444455554322    


Q ss_pred             -CcEEEEecCCC
Q 023672          245 -QTSAIYREDNM  255 (279)
Q Consensus       245 -g~i~~wd~~~~  255 (279)
                       ..|+.+++.++
T Consensus       198 ~~~v~~h~lgt~  209 (686)
T PRK10115        198 PYQVWRHTIGTP  209 (686)
T ss_pred             CCEEEEEECCCC
Confidence             35888888887

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.25  E-value=5.2  Score=30.29  Aligned_cols=127  Identities=13%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             ccCCCCcEEEEecC-C--CcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCC
Q 023672          133 ASDPTSCVFASTTR-D--HPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPG  205 (279)
Q Consensus       133 ~~~~~~~~l~s~~~-d--~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~  205 (279)
                      ++-+||++|.+|+. +  ..+++++..+.  .+... .........+.--....-|||+.|+.|  ......+|.-....
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~-e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~  151 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWT-ESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG  151 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCce-ECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence            45789999998865 2  35788876541  11110 000001111133355667899988854  43455566553211


Q ss_pred             Cceeeeeeccccc-CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          206 RDFEKYSTLKGNK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       206 ~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      ........+.... ......-..+...| +|++++.+..+.  .|||..+.+.+..+..
T Consensus       152 ~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s--~i~d~~~n~v~~~lP~  207 (243)
T PF07250_consen  152 PGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGS--IIYDYKTNTVVRTLPD  207 (243)
T ss_pred             CCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence            1111111111000 11122233567789 899998887654  4678888877666654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.13  E-value=9.2  Score=32.91  Aligned_cols=164  Identities=15%  Similarity=0.094  Sum_probs=85.9

Q ss_pred             CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec------C
Q 023672           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------R  146 (279)
Q Consensus        73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------~  146 (279)
                      ..++.++.|+.+.-+|..+++..........             .....+   .-.|.   +. ++ .++.+.      .
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~-------------~~~~~~---tssP~---v~-~g-~Vivg~~~~~~~~  179 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDY-------------KAGYTI---TAAPL---VV-KG-KVITGISGGEFGV  179 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccc-------------cccccc---cCCcE---EE-CC-EEEEeecccccCC
Confidence            4577788899999999988876443221100             000000   00010   00 23 333332      3


Q ss_pred             CCcEEEEECCCCeeeEEEeccCccc--------------------------ccccee-eEEECCCCCEEEEe--c----C
Q 023672          147 DHPIHLWDATTGLLRCTYRAYDAVD--------------------------EITAAF-SVAFNPTGTKIFAG--Y----N  193 (279)
Q Consensus       147 d~~i~i~d~~~~~~~~~~~~~~~~~--------------------------~~~~v~-~~~~~~~~~~l~~~--~----d  193 (279)
                      +|.|.-+|.++|+.+..+.......                          ....++ .+++.|...+++.+  .    +
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            6889999999998887765432110                          000111 34677766666633  2    2


Q ss_pred             C-----------eEEEEEccCCCCceeeeeecccccCCCC--CceEEEEEccCCCc---EEEEEeCCCcEEEEecCCCeE
Q 023672          194 K-----------SVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTG---MLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       194 ~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~---~l~~~~~dg~i~~wd~~~~~~  257 (279)
                      +           .|.-.|+++++ ..-.++......-...  ....-+.... ++.   .++.+..+|.+++.|.++|++
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGK-IKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCC-EEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence            2           56667777742 2222222211000001  1122233334 444   788999999999999999998


Q ss_pred             EE
Q 023672          258 LY  259 (279)
Q Consensus       258 ~~  259 (279)
                      +.
T Consensus       338 i~  339 (527)
T TIGR03075       338 LS  339 (527)
T ss_pred             ec
Confidence            63

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.12  E-value=9.6  Score=33.14  Aligned_cols=106  Identities=12%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             CCcEEEEecCCC-----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC------CeEEEEEccCC
Q 023672          137 TSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRP  204 (279)
Q Consensus       137 ~~~~l~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~~~d~~~~  204 (279)
                      +|.+.|+|+.||     ++-.||..+.+....-.......   .+-...+  +|++.++| .+      .++..||..++
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~---~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS---GHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCccee---eeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            677888888886     47788887765332221111100   1111222  45555543 33      45788888873


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-----EEEEecCCCe
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNME  256 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-----i~~wd~~~~~  256 (279)
                      .  +...........++    ....  - ++.+++.|+.|+.     |..||..+.+
T Consensus       455 ~--W~~~~~M~~~R~~~----g~a~--~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  455 T--WTLIAPMNTRRSGF----GVAV--L-NGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             c--eeecCCcccccccc----eEEE--E-CCEEEEECCccCCCccceEEEEcCCCCc
Confidence            2  22222222111222    1222  2 6788889988773     7778887654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.93  E-value=3.5  Score=27.75  Aligned_cols=120  Identities=13%  Similarity=0.048  Sum_probs=69.6

Q ss_pred             EEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (279)
Q Consensus        65 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  144 (279)
                      .-.|......|++++.-|+|.|++..........        ....+  ....-+..|++++-.+-..  +.....|+.|
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------~~~~i--~~LNin~~italaaG~l~~--~~~~D~LliG   70 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------QDSDI--SFLNINQEITALAAGRLKP--DDGRDCLLIG   70 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCcccccccc--------ccCce--eEEECCCceEEEEEEecCC--CCCcCEEEEe
Confidence            3456666668888999999999987654221110        11111  1222334666665433211  2334467777


Q ss_pred             cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC----CCCEEEEecCCeEEEEEccC
Q 023672          145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~d~~i~~~d~~~  203 (279)
                      +. ..|..||+.....+.....+.      .|.++.+-.    ...++++|.+-.|.-||..-
T Consensus        71 t~-t~llaYDV~~N~d~Fyke~~D------Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   71 TQ-TSLLAYDVENNSDLFYKEVPD------GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             cc-ceEEEEEcccCchhhhhhCcc------ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            64 468899998776554433333      566666632    24566677878888888764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.86  E-value=2.7  Score=34.55  Aligned_cols=169  Identities=12%  Similarity=0.104  Sum_probs=86.8

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+......|..+-..|||+.|+.-+. ..+.|+++.+....... ..             ....++.+..+.   .....
T Consensus       215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk-l~-------------~dspg~~~~~Vt---e~l~l  276 (733)
T COG4590         215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK-LV-------------DDSPGDSRHQVT---EQLYL  276 (733)
T ss_pred             hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh-hh-------------hcCCCchHHHHH---HHHHH
Confidence            35555677888999999998876655 67889998865442210 00             000110000000   00011


Q ss_pred             CCCCcEEEEecCCCcEEEE-ECCCCee-----eEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCc
Q 023672          135 DPTSCVFASTTRDHPIHLW-DATTGLL-----RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD  207 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~-d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~  207 (279)
                      -..|..+..++.||.|.-| |++.+..     ++.++....     ++..+.-..+.+-+++ ...|.+.++..... +.
T Consensus       277 L~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa-----~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~-~~  350 (733)
T COG4590         277 LSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPA-----EVQFLLPETNRKGFYSLYRNGTLQSFYSTSE-KL  350 (733)
T ss_pred             HhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcc-----cceeeccccccceEEEEcCCCceeeeecccC-cc
Confidence            2245567888889988755 6654321     111111111     2222211112233333 26677776655431 11


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                       -   -+    ...-..+.-+++|| ++.+|++-. .|.|+++.+.+..+
T Consensus       351 -l---L~----~~~~~~~~~~~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         351 -L---LF----ERAYQAPQLVAMSP-NQAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             -e---eh----hhhhcCcceeeeCc-ccchheeec-CCceEEEEecCCCC
Confidence             0   01    11122466789999 888887653 56799998876543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.51  E-value=6.5  Score=34.94  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             eEEECCCCCEEEE-ecCC-----eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          178 SVAFNPTGTKIFA-GYNK-----SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       178 ~~~~~~~~~~l~~-~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      .++|-|.|..+++ +.||     .|.++..+.  ..-.....    ..+....+..++|+- ....++.+ ..+.|++|-
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNG--LrHGef~l----r~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwt  322 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNG--LRHGEFDL----RVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWT  322 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCC--cccCCccc----cCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEE
Confidence            4899999999884 3333     344444332  11000000    013344567788887 66666554 456799998


Q ss_pred             cCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          252 EDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ..+-.---...-.-..+.-+.|+|.-
T Consensus       323 tkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         323 TKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             ccceEEEEEEeecCCCcceeeecccc
Confidence            76654332222233345667777753

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.41  E-value=13  Score=33.55  Aligned_cols=123  Identities=13%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCcccc---ccceeeEEECC----------------CCCEEE-EecCCeEE
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE---ITAAFSVAFNP----------------TGTKIF-AGYNKSVR  197 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~----------------~~~~l~-~~~d~~i~  197 (279)
                      +..++.++.++.|.-.|..+|+.+..+........   ...+..+.+..                .+..++ ...|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            44677788889999999999999888765432111   00122233321                223555 44899999


Q ss_pred             EEEccCCCCceeeeee-----cccccCCCCCceEEEEEcc--CCCcEEEEEeC----------CCcEEEEecCCCeEEEE
Q 023672          198 VFDVHRPGRDFEKYST-----LKGNKEGQAGIMSAIAFSP--THTGMLAIGSY----------SQTSAIYREDNMELLYV  260 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp--~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~  260 (279)
                      -.|.+++ +....+..     +...+......-..+.-.|  .++ .++.|+.          +|.|+-+|.++|+++-.
T Consensus       274 ALDA~TG-k~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTG-KLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCC-CEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999885 22211100     1000000000000111111  133 4445532          68899999999998876


Q ss_pred             Ee
Q 023672          261 LH  262 (279)
Q Consensus       261 ~~  262 (279)
                      +.
T Consensus       352 ~~  353 (764)
T TIGR03074       352 WD  353 (764)
T ss_pred             Ee
Confidence            65

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=90.41  E-value=10  Score=32.21  Aligned_cols=104  Identities=8%  Similarity=0.073  Sum_probs=50.3

Q ss_pred             CCcEEEEecCCC---cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeee
Q 023672          137 TSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       137 ~~~~l~s~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ++++.+.|+.++   .+..||.++.+-...-.......   .. +++ .-++++.+.|  |.+.+||.+++  .+.....
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~---~~-~~~-~~~~~IYv~G--G~~e~ydp~~~--~W~~~~~  432 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY---KS-CAL-VFGRRLFLVG--RNAEFYCESSN--TWTLIDD  432 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc---cc-eEE-EECCEEEEEC--CceEEecCCCC--cEeEcCC
Confidence            566667766543   46788887765433211111100   11 121 2234454555  34678888763  2222222


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~  256 (279)
                      +    .........+.+   ++.+.+.|+.+     ..+..||..+.+
T Consensus       433 m----~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        433 P----IYPRDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             C----CCCccccEEEEE---CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            2    111112222222   66788888754     346677766544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.39  E-value=7.9  Score=30.91  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=59.1

Q ss_pred             ceeeEEECCCCCEEEEe-cC------CeEEEEEccCCCCceeeeeeccc--------ccCCCCCceEEEEEccCCCcEEE
Q 023672          175 AAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLA  239 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~d------~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~~l~  239 (279)
                      ...+|++.+++.++++. .+      ..|+.++..  +.....+.....        .........-+++++| ++..|+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF  162 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence            34578887888888877 67      788888866  333222211110        1123355788999999 777555


Q ss_pred             EEeC-----CC--c-------EEE--EecCC-CeE----EEEEee-----cCCCEEEEEEccCCC
Q 023672          240 IGSY-----SQ--T-------SAI--YREDN-MEL----LYVLHG-----QEGGVTHVSKLSSAY  278 (279)
Q Consensus       240 ~~~~-----dg--~-------i~~--wd~~~-~~~----~~~~~~-----~~~~v~~~~~spdg~  278 (279)
                      ++.+     |+  .       ++|  ||..+ ++.    .+.+..     ....|..+.+-+|++
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~  227 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR  227 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence            5543     22  1       344  55544 322    233332     345788999998886

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.36  E-value=0.05  Score=44.31  Aligned_cols=136  Identities=13%  Similarity=0.268  Sum_probs=82.5

Q ss_pred             EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE-EE
Q 023672           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV-FA  142 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~  142 (279)
                      ....|-|.+.-++.++.+..+..||-.....                   ......+...+++|       +-++.. ++
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~-------------------le~n~tg~aldm~w-------Dkegdvlav   91 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVI-------------------LELNPTGKALDMAW-------DKEGDVLAV   91 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhccee-------------------cccCCchhHhhhhh-------ccccchhhh
Confidence            3456777666688888888899998764322                   11111223334444       334443 44


Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  221 (279)
                      .+-..+.+.+||+.+.... .+.....  +  .-.-+.|++.+..++.+ ..+.+.+++..+..    .....    ..|
T Consensus        92 lAek~~piylwd~n~eytq-qLE~gg~--~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR----~iiv~----Gkh  158 (615)
T KOG2247|consen   92 LAEKTGPIYLWDVNSEYTQ-QLESGGT--S--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR----RIIVM----GKH  158 (615)
T ss_pred             hhhcCCCeeechhhhhhHH-HHhccCc--c--hHHHHhhccCCccccccccccceEEEeccchh----hhhhh----ccc
Confidence            4566789999999764321 1211111  0  11227889988888888 88999999998731    11111    338


Q ss_pred             CCceEEEEEccCCCcEEE
Q 023672          222 AGIMSAIAFSPTHTGMLA  239 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~  239 (279)
                      ...++++++.+ .+..+.
T Consensus       159 ~RRgtq~av~l-Ed~vil  175 (615)
T KOG2247|consen  159 QRRGTQIAVTL-EDYVIL  175 (615)
T ss_pred             ccceeEEEecc-cceeee
Confidence            88899999999 554433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.15  E-value=5.4  Score=33.59  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcc---ccc---cccccccCCCCcccceeeec-CCCceEEEEeeCccccc
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGI---SYD---VNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSAS  134 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  134 (279)
                      .|..+..++.|..++-++.+|.+.++=....+.   ..+   .-.|....-.    ..+... ..-.+...+|+|+++  
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~----~~~ftss~~ltl~Qa~WHP~S~--  178 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA----ERFFTSSTSLTLKQAAWHPSSI--  178 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc----ceeeccCCceeeeeccccCCcc--
Confidence            467788899999999888898765543221111   000   0111111000    001111 112466778888743  


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLR  161 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~  161 (279)
                        ....+..-+.|..|++||+.....+
T Consensus       179 --~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  179 --LDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             --CCceEEEEecCcEEEEEecCCcchh
Confidence              2346667777999999999866544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.95  E-value=4.5  Score=34.96  Aligned_cols=31  Identities=23%  Similarity=0.444  Sum_probs=26.1

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEecc
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAY  167 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~  167 (279)
                      +..++++.+.|+++|+||+.+++++......
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence            5568999999999999999999997766443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.90  E-value=1.2  Score=27.66  Aligned_cols=43  Identities=12%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      .+..+|.+.-||..+++....+..-.      ..+.+++++++.+++.+
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~------fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLY------FPNGVALSPDESFVLVA   74 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEES------SEEEEEE-TTSSEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCC------ccCeEEEcCCCCEEEEE
Confidence            34456778889999987655554433      56789999999988865

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.71  E-value=14  Score=32.71  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       223 ~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      ..+..+..|| +..+|+-=...|.|.+-+....+.+..+.
T Consensus       217 ~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccC
Confidence            4577899999 89999999999999998887776655554

>PRK10115 protease 2; Provisional

Probab=89.63  E-value=15  Score=32.91  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             ceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           62 FLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      .+..+.++||+++|+.+..     .-.|++.|+.++.....                 .... .. ..++|       .+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-----------------~i~~-~~-~~~~w-------~~  181 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-----------------LLDN-VE-PSFVW-------AN  181 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-----------------cccC-cc-eEEEE-------ee
Confidence            4677889999998875432     33578888876532100                 0000 01 33556       55


Q ss_pred             CCcEEEEecCC------CcEEEEECCCC--eeeEEEeccCcccccccee-eEEECCCCCEEE--E-e-cCCeEEEEEccC
Q 023672          137 TSCVFASTTRD------HPIHLWDATTG--LLRCTYRAYDAVDEITAAF-SVAFNPTGTKIF--A-G-YNKSVRVFDVHR  203 (279)
Q Consensus       137 ~~~~l~s~~~d------~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~--~-~-~d~~i~~~d~~~  203 (279)
                      +++.|+....+      ..|..+++.++  +....+.....     ... .+..+.++++++  + + .++.+.+++...
T Consensus       182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-----~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-----TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-----CEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            66655544322      36788888887  33334442221     122 334455777665  2 2 457899998643

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.09  E-value=12  Score=31.06  Aligned_cols=111  Identities=8%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CCcEEEEecCCCcEEEEECCCCe-----eeEEEeccCccccccceeeEEEC---C--CCCEEEEecCCeEEEEEccCCCC
Q 023672          137 TSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDAVDEITAAFSVAFN---P--TGTKIFAGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~~~d~~~~~~  206 (279)
                      +...|++|+..|.++||+.....     .+.......      +|..+..-   +  +...|++-.-..+.+|.+.....
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~------PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKD------PILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCC------cEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence            45689999999999999986543     122222221      55555543   2  22455555888899998853211


Q ss_pred             ------ceeeeeecccccCCCCCceEEEEEccCC----CcEEEEEeCCCcEEEEecCCCe
Q 023672          207 ------DFEKYSTLKGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       207 ------~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                            ...........+   ......+++-|.+    ..+++.=+.||.+.+|+-+.-.
T Consensus       110 ~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~  166 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA  166 (418)
T ss_pred             CcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence                  122211222111   2234445554422    4678888999999999976544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.39  E-value=13  Score=30.77  Aligned_cols=153  Identities=14%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      +...+++||..|.++||+.........             ...+...-+.+|..+....-  .-..+...||. =.-..+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-------------~lllE~~l~~PILqv~~G~F--~s~~~~~~LaV-LhP~kl   99 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-------------DLLLETQLKDPILQVECGKF--VSGSEDLQLAV-LHPRKL   99 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-------------cEEEEEecCCcEEEEEeccc--cCCCCcceEEE-ecCCEE
Confidence            345899999999999999865432111             11234445567777765321  00112234443 335567


Q ss_pred             EEEECCC--Ce-------eeEEEeccCccccccceeeEEECCC----C-CEEEE-ecCCeEEEEEccCCCCceeeeeecc
Q 023672          151 HLWDATT--GL-------LRCTYRAYDAVDEITAAFSVAFNPT----G-TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       151 ~i~d~~~--~~-------~~~~~~~~~~~~~~~~v~~~~~~~~----~-~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .+|.+..  |.       .+..+..|.-   ....+.+++-|-    + .++.+ +.||.+.+|+-+.     ..+..+.
T Consensus       100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----~~f~~~l  171 (418)
T PF14727_consen  100 SVYSVSLVDGTVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----FAFSRFL  171 (418)
T ss_pred             EEEEEEecCCCcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----EEEEEEc
Confidence            7777631  11       1111111111   012334444332    2 34443 5999999999876     1111111


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                         .+ ---...++|.+ ..+.+++++.+..+.-|..
T Consensus       172 ---p~-~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  172 ---PD-FLLPGPLCYCP-RTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ---CC-CCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence               11 11233467888 7777888887777777754

>smart00564 PQQ beta-propeller repeat

Probab=88.27  E-value=1.5  Score=20.91  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEE
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTY  164 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~  164 (279)
                      .++.++.++.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999876653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.93  E-value=21  Score=32.49  Aligned_cols=131  Identities=13%  Similarity=0.126  Sum_probs=71.3

Q ss_pred             CceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .+...++|+| +.+.||.....|.-.||++....... ...........+.+ ......-..-..+.|       .++..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~-~~~~~~~~~~~gsi-~~d~~e~s~w~rI~W-------~~~~~  216 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK-SSNLRLSRNISGSI-IFDPEELSNWKRILW-------VSDSN  216 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccC-CcceeeccCCCccc-cCCCcccCcceeeEe-------cCCCC
Confidence            3567899999 56689999999999999993221110 00111000000000 001111123345556       45555


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEecCCeEEEEEccCC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAGYNKSVRVFDVHRP  204 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~~~d~~~~  204 (279)
                      .|+.++. ..+.++|+++......+.....   ...|..+.-+|.. .+++.-....|...|+...
T Consensus       217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~---~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~  278 (765)
T PF10214_consen  217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKT---WSWILDVKRSPDNPSHVFILTSKEIIWLDVKSS  278 (765)
T ss_pred             EEEEEcC-CceEEEECCCCCccchhccCCC---hhheeeEEecCCccceEEEEecCeEEEEEccCC
Confidence            6776664 4588899987765332222211   1267777777762 3333334467888888764

These proteins are found in fungi.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.75  E-value=19  Score=30.66  Aligned_cols=124  Identities=9%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEec--------------CCeEEEE
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------NKSVRVF  199 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------d~~i~~~  199 (279)
                      ..++|.+++...  ..+..+|+. |+.+..........  ..=..+...|+|++|+.+.              ...|..+
T Consensus       155 ~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~--~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  155 QLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY--DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             E-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE---B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             EcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc--ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            356787776655  778888875 66666655444210  0113577788888877322              1223333


Q ss_pred             EccCCCCceeeeeeccccc---------------------CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE
Q 023672          200 DVHRPGRDFEKYSTLKGNK---------------------EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~  258 (279)
                      | .+ ++....+... ..+                     ...=-.+.++.+.+.++.+|+++-.-..|...|.++++..
T Consensus       230 d-~t-G~vv~~wd~~-d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~  306 (477)
T PF05935_consen  230 D-PT-GEVVWEWDFF-DHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK  306 (477)
T ss_dssp             --TT-S-EEEEEEGG-GTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred             C-CC-CCEEEEEehH-HhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence            4 33 2221111100 000                     0001248899999856667777665667888998888887


Q ss_pred             EEEeecC
Q 023672          259 YVLHGQE  265 (279)
Q Consensus       259 ~~~~~~~  265 (279)
                      ..+-.+.
T Consensus       307 Wilg~~~  313 (477)
T PF05935_consen  307 WILGPPG  313 (477)
T ss_dssp             EEES-ST
T ss_pred             EEeCCCC
Confidence            7776554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.43  E-value=2.8  Score=20.98  Aligned_cols=29  Identities=21%  Similarity=0.114  Sum_probs=24.3

Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYD  168 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~  168 (279)
                      .++.++.+|.|.-.|.++|+.+..+....
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            35566899999999999999998887654

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.39  E-value=5.9  Score=24.61  Aligned_cols=37  Identities=14%  Similarity=-0.038  Sum_probs=25.0

Q ss_pred             eCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       242 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..+|.+.-||..+++..-.+.+-. -.++++++||+.+
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~   70 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESF   70 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCE
Confidence            346789999999988655555433 5689999999863

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PHA03098 kelch-like protein; Provisional

Probab=86.35  E-value=21  Score=30.82  Aligned_cols=106  Identities=14%  Similarity=0.101  Sum_probs=50.0

Q ss_pred             CCcEEEEecCC-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec-C-----CeEEEEEccCC
Q 023672          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-N-----KSVRVFDVHRP  204 (279)
Q Consensus       137 ~~~~l~s~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d-----~~i~~~d~~~~  204 (279)
                      ++.+++.|+.+     ..+..||..+.+-...-..+...    .-.+++. -++++++ .|. .     ..+..||..+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----YNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----ccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            45566777654     34777888776543221111110    1112222 2344444 342 1     45888998763


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC--------cEEEEecCCCe
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--------TSAIYREDNME  256 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg--------~i~~wd~~~~~  256 (279)
                      .  +...........+    . ++ ... ++.+++.|+.++        .+.+||..+.+
T Consensus       417 ~--W~~~~~~p~~r~~----~-~~-~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        417 K--WSKGSPLPISHYG----G-CA-IYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             e--eeecCCCCccccC----c-eE-EEE-CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            1  2222122111111    1 22 223 566777776432        37888887653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.71  E-value=6.7  Score=34.67  Aligned_cols=79  Identities=9%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             CceEEEEEc--cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           61 NFLKGIKWS--PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        61 ~~v~~~~~~--~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ..++++++.  ...++||+++....|.||-......              +....-...+...|.+++|.+..  .+++|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~--------------r~~~~~s~~~~hNIP~VSFl~~~--~d~~G  227 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDE--------------RFYHVPSHQHSHNIPNVSFLDDD--LDPNG  227 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEecccc--------------ccccccccccccCCCeeEeecCC--CCCcc
Confidence            478999998  7888899999888888886653210              00000112256678888887662  24455


Q ss_pred             c-EEEEecCCCcEEEEEC
Q 023672          139 C-VFASTTRDHPIHLWDA  155 (279)
Q Consensus       139 ~-~l~s~~~d~~i~i~d~  155 (279)
                      . .+++++..|.+.+|++
T Consensus       228 ~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  228 HVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ceEEEEEeccCcEEEEEE
Confidence            4 7888999999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=85.32  E-value=15  Score=33.47  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=45.4

Q ss_pred             CCcEEEEECCCCeeeEE-EeccCccccccceeeEEECCCCCEEE--EecC-----CeEEEEEccCCCCceeeeeeccccc
Q 023672          147 DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIF--AGYN-----KSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       147 d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      .+.|.+-|......... +....      ++.+-.|||||+.|+  ++..     ..|++-|+++.+..+..+.      
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~~~~------~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~------  395 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIEDTI------SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP------  395 (912)
T ss_pred             CCeEEEEecCCCCceEEEecCCC------ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee------
Confidence            35777888776555443 33322      788999999999988  3432     2588999988654433331      


Q ss_pred             CCCCCceEEEEEcc
Q 023672          219 EGQAGIMSAIAFSP  232 (279)
Q Consensus       219 ~~~~~~v~~~~~sp  232 (279)
                       -....|..-...+
T Consensus       396 -ve~aaiprwrv~e  408 (912)
T TIGR02171       396 -VENAAIPRWRVLE  408 (912)
T ss_pred             -cccccccceEecC
Confidence             1234455555556

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.11  E-value=16  Score=28.54  Aligned_cols=158  Identities=14%  Similarity=0.166  Sum_probs=83.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC-----CeE-EEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG-----SSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQD  108 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  108 (279)
                      .+..||+.+.+.++.+..........+.+..+.+....     .+. ++=+..+-|.|+|+.+++......... .....
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~-~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF-SPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC-TTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc-ceecc
Confidence            46789999999888766555444456789999987622     222 233445689999999876533322211 11110


Q ss_pred             cccc---eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-----e---------eeEEEeccCccc
Q 023672          109 SYEA---SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-----L---------LRCTYRAYDAVD  171 (279)
Q Consensus       109 ~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-----~---------~~~~~~~~~~~~  171 (279)
                      ....   .........+..++..|    .+++++.|+.+...+ -++|-+.+.     .         .+..+-...   
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~----~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~---  185 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSP----ISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG---  185 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-T----TSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----
T ss_pred             ccceeccCceEecCCCccccccCC----CCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccC---
Confidence            0000   00111112244444433    255777777665443 223333211     1         011111000   


Q ss_pred             cccceeeEEECCCCCEEEEe-cCCeEEEEEccC
Q 023672          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR  203 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~  203 (279)
                        .....++++++|.++++- ..+.|..|+..+
T Consensus       186 --~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  186 --SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             ---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             --CCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence              144578889988888876 889999999986

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=82.70  E-value=38  Score=30.84  Aligned_cols=73  Identities=14%  Similarity=-0.038  Sum_probs=43.6

Q ss_pred             ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee---------eeeccc-cc-CCCCCceEEEEEccCCCcEEEEEe
Q 023672          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK---------YSTLKG-NK-EGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~---------~~~~~~-~~-~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      .|.++....-+.+++.. .||+|.++|-.+-......         +..+.. .+ -..-..+..++||| ++..++.-.
T Consensus       261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~~  339 (753)
T PF11635_consen  261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQID  339 (753)
T ss_pred             eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEEe
Confidence            56666666667777755 9999999998763111111         101100 00 00111344588999 888888888


Q ss_pred             CCCcEE
Q 023672          243 YSQTSA  248 (279)
Q Consensus       243 ~dg~i~  248 (279)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.29  E-value=4.7  Score=20.16  Aligned_cols=27  Identities=7%  Similarity=0.091  Sum_probs=22.2

Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          237 MLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .++.++.+|.|+-.|.++|+.+-.++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355668999999999999999877763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=82.27  E-value=9.4  Score=23.57  Aligned_cols=29  Identities=24%  Similarity=0.482  Sum_probs=24.0

Q ss_pred             ceeeEEECCCCCEEE-Ee-cCCeEEEEEccC
Q 023672          175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHR  203 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~  203 (279)
                      ....|.++|++++|+ ++ ..+.|++|..+.
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            557899999999998 44 889999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=81.75  E-value=24  Score=27.92  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=0.0

Q ss_pred             eEecCCCCcccceeeeeeccCCCCCceEEEEE--cc---CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW--SP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        37 ~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~---~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+.|+.+++.+               +..+++  +|   +|++.++=+..|.+.-+|.+++..                 
T Consensus       188 ~vidv~s~evl---------------~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~-----------------  235 (335)
T TIGR03032       188 CVIDIPSGEVV---------------ASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKF-----------------  235 (335)
T ss_pred             EEEEeCCCCEE---------------EcCccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcE-----------------


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEe--------------------cCCCcEEEEECCCCeeeEEEeccCccc
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFAST--------------------TRDHPIHLWDATTGLLRCTYRAYDAVD  171 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~--------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~  171 (279)
                              ..|..+.-.|..++|.  |.+++++                    ....-|.+.|+++|..+..++......
T Consensus       236 --------e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~  305 (335)
T TIGR03032       236 --------QPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIE  305 (335)
T ss_pred             --------EEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCcee


Q ss_pred             cccceeeEEECCC
Q 023672          172 EITAAFSVAFNPT  184 (279)
Q Consensus       172 ~~~~v~~~~~~~~  184 (279)
                         .+++++.-|.
T Consensus       306 ---EifdV~vLPg  315 (335)
T TIGR03032       306 ---EIYDVAVLPG  315 (335)
T ss_pred             ---EEEEEEEecC

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.74  E-value=19  Score=26.63  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=16.6

Q ss_pred             CCCCceEEEEEccCCCcEEEEEe
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      .+.+-.+.+++.|+.+.++++|-
T Consensus       226 ~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         226 SNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cccccccceeecCcCCeEEEecC
Confidence            44556788999995557777763

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.86  E-value=44  Score=30.41  Aligned_cols=26  Identities=8%  Similarity=-0.012  Sum_probs=22.9

Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          237 MLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       237 ~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .++.++.+|.+++.|.++|+++...+
T Consensus       461 ~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       461 ALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEEEECCCCEEEEEECCCCCEEeece
Confidence            78899999999999999999886544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.74  E-value=26  Score=27.66  Aligned_cols=73  Identities=14%  Similarity=0.116  Sum_probs=45.8

Q ss_pred             cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEcc
Q 023672          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH  202 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~  202 (279)
                      +++...++|.+|+|+-.-..|.+.|.++|+.+..+.......-...-...++.-+-+++-.+ .++.|.|+|-.
T Consensus       147 NsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  147 NSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             eeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            33455778899999988889999999999999988665220000001123333333444333 67778888773

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=80.64  E-value=29  Score=28.15  Aligned_cols=40  Identities=13%  Similarity=0.138  Sum_probs=23.6

Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~  241 (279)
                      .+|.+.-||..+     +....+.    ..-...+.++.|| ++.+++.+
T Consensus       197 ~~GRl~~YD~~t-----K~~~VLl----d~L~F~NGlaLS~-d~sfvl~~  236 (376)
T KOG1520|consen  197 PTGRLFRYDPST-----KVTKVLL----DGLYFPNGLALSP-DGSFVLVA  236 (376)
T ss_pred             CccceEEecCcc-----cchhhhh----hcccccccccCCC-CCCEEEEE
Confidence            456677777765     2222221    1123467899999 77777665

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=80.40  E-value=4.5  Score=18.66  Aligned_cols=25  Identities=8%  Similarity=0.177  Sum_probs=17.9

Q ss_pred             eEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          225 MSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       225 v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                      ...++.++ +|.++++=+....|+++
T Consensus         4 P~gvav~~-~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDS-DGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeC-CCCEEEEECCCCEEEEC
Confidence            45777877 78888777777766654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 42/251 (16%)
Query: 45  RTYHFYNQ----FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIF------------- 87
           +T   +N+     +T +  ++ ++G+ +SPDG +  ++S+DKT++++             
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 261
Query: 88  SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS-----ASDPTSCVFA 142
           S   NG+++  +  ++A   D     L    G+ +       H S     A  P     A
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIA 319
Query: 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDV 201
           S + D  + LW+      R            ++ + VAF+P G  I  A  +K+V++++ 
Sbjct: 320 SASDDKTVKLWN------RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 372
Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261
               R+ +   TL G+     G    +AFSP     +A  S  +T  ++   N +LL  L
Sbjct: 373 ----RNGQLLQTLTGHSSSVRG----VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTL 422
Query: 262 HGQEGGVTHVS 272
            G    V  V+
Sbjct: 423 TGHSSSVWGVA 433

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG+   T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
           + I  + Y+   R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I         +DV          S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG+   T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
           + I  + Y+   R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 38/155 (24%)
Query: 52  QFRTSSIPNN--FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
              TSS P++  +++ + +SPDG    T +ED+ +RI+ +    I               
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------------- 157
Query: 110 YEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
               +++ +G  + +Y   +FP             S + D  + +WD  TG    T    
Sbjct: 158 ----VMILQGHEQDIYSLDYFPSGDK-------LVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 168 DAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFD 200
           D V       +VA +P  G  I AG  +++VRV+D
Sbjct: 207 DGV------TTVAVSPGDGKYIAAGSLDRAVRVWD 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.59
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.55
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.39
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.36
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.12
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.06
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.98
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.98
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.95
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.95
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.91
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.84
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.55
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.53
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.44
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.39
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.37
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.36
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.34
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.31
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.31
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.25
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.21
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.14
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.13
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.06
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.99
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.94
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.92
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.87
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.82
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.82
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.79
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.67
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.61
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.39
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.37
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.34
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.33
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.23
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.12
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.83
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.68
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.48
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.24
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.07
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.03
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.0
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.48
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.74
3ott_A	758	Two-component system sensor histidine kinase; beta	92.72
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.42
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.39
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.98
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.74
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.73
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.47
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.39
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.82
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.69
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.39
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.92
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.71
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.68
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.77
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	87.99
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.89
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.32
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	87.26
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.99
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.05
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.29
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.13
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.85

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=240.18  Aligned_cols=207  Identities=15%  Similarity=0.164  Sum_probs=165.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++......  ....+|.+.|++++|+|++++|++|+.|++|++||+.++....                 .
T Consensus       104 ~v~lWd~~~~~~~~~~~--~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~-----------------~  164 (344)
T 4gqb_B          104 AVELWELDENETLIVSK--FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS-----------------S  164 (344)
T ss_dssp             EEEEEEECTTSSCEEEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------------E
T ss_pred             EEEEEeccCCCceeEee--ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------E
Confidence            57899998887654322  2456899999999999999999999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe-
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-  191 (279)
                      ...|...|.++.|       ++++ .+|++++.|++|++||+++++....+.....   ...+.+++|+|++ +++++| 
T Consensus       165 ~~~h~~~V~~~~~-------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          165 YRAHAAQVTCVAA-------SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP---GYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ECCCSSCEEEEEE-------CSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEE
T ss_pred             EcCcCCceEEEEe-------cCCCCCceeeeccccccccccccccceeeeeeccee---eccceeeeecCCCCcceEEec
Confidence            3456788999988       4555 4789999999999999999988877654322   1167899999964 667766 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  271 (279)
                      .|+.|++||++++    +.+..+    .+|...|++++|+|++..+|++|+.|++|+|||+++++++ .+.+|.+.|+++
T Consensus       235 ~dg~v~~wd~~~~----~~~~~~----~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v  305 (344)
T 4gqb_B          235 ENGTVSLVDTKST----SCVLSS----AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA  305 (344)
T ss_dssp             TTSEEEEEESCC------CCEEE----ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE
T ss_pred             cCCcEEEEECCCC----cEEEEE----cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE
Confidence            8999999999984    223333    6899999999999944478999999999999999998865 578899999999


Q ss_pred             EEccCCCC
Q 023672          272 SKLSSAYT  279 (279)
Q Consensus       272 ~~spdg~~  279 (279)
                      +|+|+|++
T Consensus       306 ~~sp~~~~  313 (344)
T 4gqb_B          306 TWSPLNHS  313 (344)
T ss_dssp             EECSSSTT
T ss_pred             EEeCCCCe
Confidence            99999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.8e-36  Score=233.34  Aligned_cols=200  Identities=18%  Similarity=0.259  Sum_probs=173.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++...      .+.+|...+.+++|+|++++|++|+.||.|++|+++++....                 .
T Consensus       103 ~i~lWd~~~~~~~~------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~-----------------~  159 (321)
T 3ow8_A          103 HIRLWDLENGKQIK------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY-----------------S  159 (321)
T ss_dssp             EEEEEETTTTEEEE------EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE-----------------E
T ss_pred             cEEEEECCCCCEEE------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE-----------------E
Confidence            56788888776654      566788889999999999999999999999999998754321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...+.+++|       +|++++|++|+.|+.|++||+++++.+..+..+..     .|.+++|+|++++|+++ .|
T Consensus       160 ~~~~~~~v~~~~~-------spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          160 LDTRGKFILSIAY-------SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-----PIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             EECSSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CCCEEEECTTSCEEEEECTT
T ss_pred             ecCCCceEEEEEE-------CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC-----ceeEEEEcCCCCEEEEEcCC
Confidence            2345567888877       77899999999999999999999999999887776     89999999999999976 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.|++||++..    .....+    .+|...|.+++|+| ++.+|++|+.|++|++||+++++++..+.+|...|.+++|
T Consensus       228 g~i~iwd~~~~----~~~~~~----~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          228 GYIKIYDVQHA----NLAGTL----SGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             SCEEEEETTTC----CEEEEE----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CeEEEEECCCc----ceeEEE----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE
Confidence            99999999874    222333    68999999999999 8999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 023672          274 LSSAY  278 (279)
Q Consensus       274 spdg~  278 (279)
                      +|+|+
T Consensus       299 s~~g~  303 (321)
T 3ow8_A          299 NGNGS  303 (321)
T ss_dssp             CTTSS
T ss_pred             CCCCC
Confidence            99986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-35  Score=237.38  Aligned_cols=202  Identities=20%  Similarity=0.225  Sum_probs=173.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.++....      .+.+|.+.|.+++|+|++++|++|+.|++|+|||+.++....                 .
T Consensus       131 ~i~vwd~~~~~~~~------~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-----------------~  187 (410)
T 1vyh_C          131 TIKVWDYETGDFER------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR-----------------T  187 (410)
T ss_dssp             CEEEEETTTCCCCE------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-----------------C
T ss_pred             eEEEEECCCCcEEE------EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----------------E
Confidence            46688888777654      678999999999999999999999999999999998654321                 1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...|...|.+++|       +|++.+|++|+.|++|++||++++.++..+..|..     .|.++.|+|++.+++++ .|
T Consensus       188 ~~~h~~~V~~v~~-------~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~g~~l~s~s~D  255 (410)
T 1vyh_C          188 MHGHDHNVSSVSI-------MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSND  255 (410)
T ss_dssp             CCCCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCCCEEEEEE-------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCC
Confidence            2346678999887       67889999999999999999999999999888776     89999999999999966 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC-------------------CcEEEEEeCCCcEEEEecCC
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-------------------TGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-------------------~~~l~~~~~dg~i~~wd~~~  254 (279)
                      +.|++||++++    .....+    .+|...|.+++|+|+.                   +.+|++|+.|+.|++||+++
T Consensus       256 ~~v~vwd~~~~----~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          256 QTVRVWVVATK----ECKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             SCEEEEETTTC----CEEEEE----CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             CeEEEEECCCC----ceeeEe----cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999874    222333    6888999999999931                   56899999999999999999


Q ss_pred             CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          255 MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +.++..+.+|...|++++|+|+|++
T Consensus       328 ~~~~~~~~~h~~~v~~v~~~~~g~~  352 (410)
T 1vyh_C          328 GMCLMTLVGHDNWVRGVLFHSGGKF  352 (410)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSC
T ss_pred             CceEEEEECCCCcEEEEEEcCCCCE
Confidence            9999999999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-34  Score=234.34  Aligned_cols=201  Identities=16%  Similarity=0.236  Sum_probs=171.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.+...+.      .+.+|.+.|.+++|+|++++|++|+.|++|++||+.++....                 .
T Consensus       173 ~i~iwd~~~~~~~~------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-----------------~  229 (410)
T 1vyh_C          173 TIKLWDFQGFECIR------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-----------------T  229 (410)
T ss_dssp             CCCEEETTSSCEEE------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-----------------E
T ss_pred             eEEEEeCCCCceeE------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------E
Confidence            34566666555443      788999999999999999999999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC----------
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----------  184 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------  184 (279)
                      ...|...|..+.+       +|++.+|++|+.|++|++||+++++....+..+..     .|.+++|+|+          
T Consensus       230 ~~~h~~~v~~~~~-------~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          230 FTGHREWVRMVRP-------NQDGTLIASCSNDQTVRVWVVATKECKAELREHRH-----VVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             EECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECCSCGGGGGGGCC
T ss_pred             EeCCCccEEEEEE-------CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc-----eEEEEEEcCcccccchhhhc
Confidence            3356667888876       77899999999999999999999999888887776     8999999996          


Q ss_pred             ----------CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          185 ----------GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       185 ----------~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                                +.++++| .|+.|++||++++    .....+    .+|...|.+++|+| ++.+|++|+.||.|++||++
T Consensus       298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~----~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTL----VGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTT----EEEEEE----ECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCT
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEE----ECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Confidence                      5678866 9999999999984    333444    68899999999999 99999999999999999999


Q ss_pred             CCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          254 NMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       254 ~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +++++..+.+|...|++++|+|+|.+
T Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          369 NKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             TSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             CCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            99999999999999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.2e-34  Score=225.21  Aligned_cols=220  Identities=18%  Similarity=0.325  Sum_probs=168.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc-----------ccc--
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-----------NAC--  101 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-----------~~~--  101 (279)
                      .+++||..++....      .+..|...|.+++|+|++++|++|+.|+.|++|++.+.......           ..+  
T Consensus        78 ~v~iWd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~  151 (340)
T 1got_B           78 KLIIWDSYTTNKVH------AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             EEEEEETTTCCEEE------EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred             cEEEEECCCCCcce------EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence            45567766665543      56779999999999999999999999999999999765311000           000  


Q ss_pred             -----cccCCCCcccc----------eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec
Q 023672          102 -----SLAKDQDSYEA----------SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA  166 (279)
Q Consensus       102 -----~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~  166 (279)
                           ......+..+.          .....|...|.+++|       +|++.++++|+.|+.|++||+++++....+..
T Consensus       152 ~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL-------APDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             CCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE-------CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence                 00001111111          111234445666655       78899999999999999999999999988888


Q ss_pred             cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                      |..     .|.+++|+|++++++++ .|+.|++||+++.    .....+.  ...+...|.+++|+| ++.+|++|+.|+
T Consensus       225 h~~-----~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~--~~~~~~~v~~~~~s~-~g~~l~~g~~d~  292 (340)
T 1got_B          225 HES-----DINAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTYS--HDNIICGITSVSFSK-SGRLLLAGYDDF  292 (340)
T ss_dssp             CSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEEC--CTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred             CcC-----CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----cEEEEEc--cCCcccceEEEEECC-CCCEEEEECCCC
Confidence            776     89999999999999966 9999999999873    2222221  134455799999999 999999999999


Q ss_pred             cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          246 TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       246 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .|++||+.+++.+..+.+|.++|.+++|+|||++
T Consensus       293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~  326 (340)
T 1got_B          293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCE
Confidence            9999999999999999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-34  Score=222.17  Aligned_cols=202  Identities=16%  Similarity=0.250  Sum_probs=168.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.++....      .+.+|...|.+++|+|++++|++|+.|++|++||+.+++...                 .
T Consensus        36 ~v~lWd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~-----------------~   92 (304)
T 2ynn_A           36 RVELWNYETQVEVR------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-----------------D   92 (304)
T ss_dssp             EEEEEETTTTEEEE------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------------E
T ss_pred             cEEEEECCCCceeE------EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-----------------E
Confidence            67899998877654      667899999999999999999999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECC-CCCEEEEe-
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-  191 (279)
                      ...|...|.+++|       +|++.+|++|+.|++|++||++++ .....+..|..     .|.+++|+| ++..+++| 
T Consensus        93 ~~~h~~~v~~~~~-------~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           93 FEAHPDYIRSIAV-------HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             EECCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-----CEEEEEECTTCTTEEEEEE
T ss_pred             EeCCCCcEEEEEE-------cCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-----cEEEEEECCCCCCEEEEEe
Confidence            3457778999987       678899999999999999999887 45566776665     899999999 56788866 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC-CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  270 (279)
                      .|+.|++||++.......    +.   .+|...+..++|+|. ++.+|++|+.|++|++||+++++++..+.+|...|.+
T Consensus       161 ~D~~v~iwd~~~~~~~~~----~~---~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~  233 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFT----LT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF  233 (304)
T ss_dssp             TTSEEEEEETTCSSCSEE----EE---CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CCCeEEEEECCCCCccce----ec---cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence            999999999987422211    11   356678999999862 5679999999999999999999999999999999999


Q ss_pred             EEEccCCC
Q 023672          271 VSKLSSAY  278 (279)
Q Consensus       271 ~~~spdg~  278 (279)
                      ++|+|+++
T Consensus       234 ~~~~p~~~  241 (304)
T 2ynn_A          234 AVFHPTLP  241 (304)
T ss_dssp             EEECSSSS
T ss_pred             EEECCCCC
Confidence            99999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-34  Score=242.52  Aligned_cols=224  Identities=13%  Similarity=0.161  Sum_probs=167.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc--c-------ccccccC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD--V-------NACSLAK  105 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~--~-------~~~~~~~  105 (279)
                      .+.+|++.++....      .+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.....  .       ....+.+
T Consensus        40 ~v~l~~~~~~~~~~------~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~  113 (611)
T 1nr0_A           40 SVYTVPVGSLTDTE------IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS  113 (611)
T ss_dssp             EEEEEETTCSSCCE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT
T ss_pred             EEEEecCCCcccCe------EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC
Confidence            56788887766554      6789999999999999999999999999999999965432100  0       0000000


Q ss_pred             CCCccc---------------------ceeeecCCCceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECCCCeeeEE
Q 023672          106 DQDSYE---------------------ASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCT  163 (279)
Q Consensus       106 ~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~~  163 (279)
                       .....                     ......|...|.+++|       +|++. .|++|+.|++|++||..+++....
T Consensus       114 -dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f-------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~  185 (611)
T 1nr0_A          114 -ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKST  185 (611)
T ss_dssp             -TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred             -CCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCeEeee
Confidence             00000                     0011234556777766       66765 599999999999999999998888


Q ss_pred             EeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          164 YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      +..|..     .|.+++|+|++++|+++ .|+.|++||+.++ .....+........+|...|.+++|+| ++.+|++++
T Consensus       186 l~~H~~-----~V~~v~fspdg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s  258 (611)
T 1nr0_A          186 FGEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASAS  258 (611)
T ss_dssp             ECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEE
T ss_pred             eccccC-----ceEEEEECCCCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECC-CCCEEEEEe
Confidence            888776     89999999999999966 9999999999874 222211110011127999999999999 899999999


Q ss_pred             CCCcEEEEecCCCeEEEE-------------------------------------------EeecCCCEEEEEEccCCCC
Q 023672          243 YSQTSAIYREDNMELLYV-------------------------------------------LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       243 ~dg~i~~wd~~~~~~~~~-------------------------------------------~~~~~~~v~~~~~spdg~~  279 (279)
                      .|++|++||+++++++..                                           +.+|...|++++|+|||++
T Consensus       259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~  338 (611)
T 1nr0_A          259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT  338 (611)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence            999999999998765543                                           3478889999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=224.84  Aligned_cols=203  Identities=18%  Similarity=0.214  Sum_probs=169.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|++......    ....+.+|...|.+++|++++.++++++.|++|++||+.++....                 .
T Consensus        59 ~v~vW~~~~~~~~----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~-----------------~  117 (321)
T 3ow8_A           59 LVKVWKWRDERLD----LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK-----------------S  117 (321)
T ss_dssp             CEEEEEEETTEEE----EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-----------------E
T ss_pred             CEEEEECCCCCee----eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE-----------------E
Confidence            4566776544321    223578999999999999999999999999999999998764321                 1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...+..++|       +|++++|++++.|+.|++||+++++....+..+..     .+.+++|+|++++|+++ .|
T Consensus       118 ~~~~~~~~~~~~~-------spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~lasg~~d  185 (321)
T 3ow8_A          118 IDAGPVDAWTLAF-------SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK-----FILSIAYSPDGKYLASGAID  185 (321)
T ss_dssp             EECCTTCCCCEEE-------CTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             EeCCCccEEEEEE-------CCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc-----eEEEEEECCCCCEEEEEcCC
Confidence            1223345666655       78999999999999999999999998888877665     89999999999999976 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.|++||++++    +....+    .+|..+|.+++|+| ++.+|++|+.|+.|++||+++++++..+.+|...|.+++|
T Consensus       186 g~i~iwd~~~~----~~~~~~----~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  256 (321)
T 3ow8_A          186 GIINIFDIATG----KLLHTL----EGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF  256 (321)
T ss_dssp             SCEEEEETTTT----EEEEEE----CCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CeEEEEECCCC----cEEEEE----cccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence            99999999874    333344    68899999999999 8999999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      +|+|++
T Consensus       257 sp~~~~  262 (321)
T 3ow8_A          257 CPDDTH  262 (321)
T ss_dssp             CTTSSE
T ss_pred             CCCCCE
Confidence            999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.6e-34  Score=222.70  Aligned_cols=204  Identities=15%  Similarity=0.219  Sum_probs=169.3

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      -.+++||+.+++...      .+.+|.+.|.+++|+|++++|++|+.|++|++||+.++...                ..
T Consensus        77 ~~i~vwd~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----------------~~  134 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVV------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL----------------EQ  134 (304)
T ss_dssp             SEEEEEETTTCCEEE------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE----------------EE
T ss_pred             CEEEEEECCCCcEEE------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch----------------hh
Confidence            367899998887665      67789999999999999999999999999999999754211                11


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC--CCCEEEEe
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP--TGTKIFAG  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~  191 (279)
                      ....|...|.+++|+|.      ++..|++|+.|++|++||++++.....+..+..    ..+..+.|+|  ++.+++++
T Consensus       135 ~~~~h~~~v~~v~~~p~------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~  204 (304)
T 2ynn_A          135 TFEGHEHFVMCVAFNPK------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPYMITA  204 (304)
T ss_dssp             EECCCCSCEEEEEECTT------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCT----TCEEEEEECCSTTCCEEEEE
T ss_pred             hhcccCCcEEEEEECCC------CCCEEEEEeCCCeEEEEECCCCCccceeccCCc----CcEEEEEEEEcCCCCEEEEE
Confidence            33457778999988442      578999999999999999988876666553321    2678889887  67788866


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEE
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  270 (279)
                       .|+.|++||++++    +....+    .+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+++
T Consensus       205 s~D~~i~iWd~~~~----~~~~~~----~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~  275 (304)
T 2ynn_A          205 SDDLTIKIWDYQTK----SCVATL----EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC  275 (304)
T ss_dssp             ETTSEEEEEETTTT----EEEEEE----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred             cCCCeEEEEeCCCC----ccceee----CCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEE
Confidence             9999999999974    344444    68999999999999 8999999999999999999999999999999999999


Q ss_pred             EEEccCCC
Q 023672          271 VSKLSSAY  278 (279)
Q Consensus       271 ~~~spdg~  278 (279)
                      ++|+|+|+
T Consensus       276 ~~~~~~~~  283 (304)
T 2ynn_A          276 IATHPTGR  283 (304)
T ss_dssp             EEECTTCG
T ss_pred             EEECCCCC
Confidence            99999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=227.00  Aligned_cols=189  Identities=14%  Similarity=0.210  Sum_probs=153.7

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.....             ......|...|.+++|       +|+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~-------------~~~~~~H~~~V~~v~~-------spd  138 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS-------------KFCKYEHDDIVSTVSV-------LSS  138 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE-------------EEEEECCSSCEEEEEE-------CTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe-------------eccccCCCCCEEEEEE-------CCC
Confidence            356789999999985 6889999999999999876432111             1123467789999987       778


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-EEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      +++|++|+.|++|++||+++++.+..+..|..     .|.+++|+|++. +++++ .|+.|++||++++ +....   +.
T Consensus       139 g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~---~~  209 (344)
T 4gqb_B          139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA-----QVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KPASQ---IG  209 (344)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SCEEE---CC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC-----ceEEEEecCCCCCceeeecccccccccccccc-ceeee---ee
Confidence            99999999999999999999999999988876     999999999985 55655 9999999999984 32222   21


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .  ..+...+.+++|+|+++.+|++|+.||.|++||+++++++..+.+|...|++++|+|||.
T Consensus       210 ~--~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          210 C--SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             ------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS
T ss_pred             c--ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence            1  345567999999997778999999999999999999999999999999999999999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6e-34  Score=225.95  Aligned_cols=191  Identities=19%  Similarity=0.284  Sum_probs=162.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|.+++|+|++..|++++.|++|++||++++....                 ....|...|.++.+.|     
T Consensus       149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-----------------~~~~h~~~v~~~~~~~-----  206 (354)
T 2pbi_B          149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-----------------SFHGHGADVLCLDLAP-----  206 (354)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-----------------EEECCSSCEEEEEECC-----
T ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-----------------EEcCCCCCeEEEEEEe-----
Confidence            556799999999999999999999999999999998764321                 2345667888888744     


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ++++.+|++|+.|+.|++||+++++++..+..|..     .|.+++|+|++.+++++ .|+.|++||++.. .   ....
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~---~~~~  277 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-----DVNSVRYYPSGDAFASGSDDATCRLYDLRAD-R---EVAI  277 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT-E---EEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-----CeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c---EEEE
Confidence            45678999999999999999999999998887776     89999999999999966 9999999999873 2   2222


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +.  ...+...+.+++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++
T Consensus       278 ~~--~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~  340 (354)
T 2pbi_B          278 YS--KESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA  340 (354)
T ss_dssp             EC--CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSC
T ss_pred             Ec--CCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCE
Confidence            21  123445789999999 9999999999999999999999999999999999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=226.22  Aligned_cols=196  Identities=21%  Similarity=0.338  Sum_probs=162.2

Q ss_pred             eeeccCCCCC-ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           52 QFRTSSIPNN-FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        52 ~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ....+.+|.+ .|.+++|+|++++||+|+.|++|+|||+.++.....              ......|...|.+++|   
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------~~~~~~h~~~v~~~~~---   69 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------SVLSEGHQRTVRKVAW---   69 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE--------------EEECSSCSSCEEEEEE---
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee--------------eeeccccCCcEEEEEE---
Confidence            3447788988 999999999999999999999999999976532100              0122457778999987   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCc
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~  207 (279)
                          +|++++|++|+.|++|++||+.++.  .+..+..|..     .|.+++|+|++++|+++ .|+.|++||++.. ..
T Consensus        70 ----sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~-~~  139 (345)
T 3fm0_A           70 ----SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DE  139 (345)
T ss_dssp             ----CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTT-SC
T ss_pred             ----CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCC-CC
Confidence                7789999999999999999998764  4566776665     89999999999999966 9999999999873 33


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe--EEEEEeecCCCEEEEEEccCCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ......+    .+|...|.+++|+| ++.+|++|+.|+.|++||.++++  +...+.+|...|++++|+|+|++
T Consensus       140 ~~~~~~~----~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~  208 (345)
T 3fm0_A          140 YECVSVL----NSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR  208 (345)
T ss_dssp             EEEEEEE----CCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEEEe----cCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE
Confidence            3333344    68899999999999 89999999999999999998875  45788899999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-33  Score=222.22  Aligned_cols=190  Identities=13%  Similarity=0.200  Sum_probs=160.5

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ....+.+|.+.|.+++|+|++++|++|+.||+|+|||+.++....                 ....+...|.+++|    
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-----------------~~~~~~~~v~~~~~----  105 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-----------------AIPLRSSWVMTCAY----  105 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------------EEECSSSCEEEEEE----
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-----------------EeecCCccEEEEEE----
Confidence            345788999999999999999999999999999999998654321                 22345667888877    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCe----eeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCc
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD  207 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~  207 (279)
                         +|++.+|++|+.|+.|++||+.++.    ....+..|..     .|.++.|++++.+++++.|+.|++||++++   
T Consensus       106 ---s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~---  174 (340)
T 1got_B          106 ---APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQIVTSSGDTTCALWDIETG---  174 (340)
T ss_dssp             ---CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS-----CEEEEEEEETTEEEEEETTSCEEEEETTTT---
T ss_pred             ---CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc-----cEEEEEECCCCcEEEEECCCcEEEEECCCC---
Confidence               7789999999999999999998753    4455555554     899999999887555669999999999874   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       .....+    .+|...|.+++|+| ++.+|++|+.|+.|++||++++.++..+.+|...|++++|+|+|++
T Consensus       175 -~~~~~~----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          175 -QQTTTF----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             -EEEEEE----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred             -cEEEEE----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence             333344    68999999999999 8999999999999999999999999999999999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.6e-34  Score=226.83  Aligned_cols=206  Identities=17%  Similarity=0.195  Sum_probs=156.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++......  ....+|.+.|++++|+|++++|++|+.|++|++||+.++....                 .
T Consensus       116 ~v~lWd~~~~~~~~~~~--~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~-----------------~  176 (357)
T 4g56_B          116 AVELWEILEKESLLVNK--FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK-----------------S  176 (357)
T ss_dssp             CEEEC--------CCCC--EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE-----------------E
T ss_pred             EEEEeeccccceeEEEe--eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------E
Confidence            57788887776543211  1355899999999999999999999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe-
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-  191 (279)
                      ...|...|.+++|       ++++ .++++++.|+.|++||+++++....+.....   ...+.+++|+|++ .++++| 
T Consensus       177 ~~~h~~~v~~v~~-------s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          177 YNAHSSEVNCVAA-------CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS---DTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             ECCCSSCEEEEEE-------CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC---CSCEEEEEECTTSTTEEEEEE
T ss_pred             EcCCCCCEEEEEE-------ccCCCceeeeeccCCceEEEECCCCceeeeeeeccc---cccccchhhhhcccceEEEee
Confidence            2346678999887       4455 4789999999999999999887665543322   1268899999985 567766 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  271 (279)
                      .|+.|++||++++    +....+    .+|...|.+++|+|+++.+|++|+.|++|+|||+++++++..+ +|.+.|+++
T Consensus       247 ~d~~i~~wd~~~~----~~~~~~----~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v  317 (357)
T 4g56_B          247 ETGNVSLVNIKNP----DSAQTS----AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV  317 (357)
T ss_dssp             SSSCEEEEESSCG----GGCEEE----CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred             cccceeEEECCCC----cEeEEE----eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence            8999999999874    222233    6888999999999955578999999999999999999887655 699999999


Q ss_pred             EEcc-CCC
Q 023672          272 SKLS-SAY  278 (279)
Q Consensus       272 ~~sp-dg~  278 (279)
                      +|+| ||+
T Consensus       318 afsP~d~~  325 (357)
T 4g56_B          318 AWSPLDHS  325 (357)
T ss_dssp             EECSSSTT
T ss_pred             EEeCCCCC
Confidence            9999 665

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.5e-33  Score=220.41  Aligned_cols=207  Identities=17%  Similarity=0.242  Sum_probs=161.3

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc-------cccC--------CCCc-------
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------SLAK--------DQDS-------  109 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~--------~~~~-------  109 (279)
                      ....+.+|.+.|++++|+|++++|++|+.||+|+|||..++.........       ...+        ..+.       
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            34578899999999999999999999999999999998776542211100       0000        0000       


Q ss_pred             ---------ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEE
Q 023672          110 ---------YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA  180 (279)
Q Consensus       110 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (279)
                               ........|...|..+.|       +|++..|++++.|++|++||+++++.+..+..|..     .|.+++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~~~  203 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSF-------TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA-----DVLCLD  203 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEE
T ss_pred             eccccccccccceeeeccCCcEEEEEE-------eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-----CeEEEE
Confidence                     011122245566777766       77888999999999999999999999999988776     889999


Q ss_pred             ECCC--CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672          181 FNPT--GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       181 ~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                      |+|+  ++++++| .|+.|++||++++    .....+    .+|...|.+++|+| ++.+|++|+.|++|++||+++++.
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~----~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~  274 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAF----ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADRE  274 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEE----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEe----cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            9874  6788866 9999999999984    233333    68899999999999 899999999999999999999988


Q ss_pred             EEEEeecC--CCEEEEEEccCCCC
Q 023672          258 LYVLHGQE--GGVTHVSKLSSAYT  279 (279)
Q Consensus       258 ~~~~~~~~--~~v~~~~~spdg~~  279 (279)
                      +..+..+.  ..+.+++|+|+|++
T Consensus       275 ~~~~~~~~~~~~~~~~~~s~~g~~  298 (354)
T 2pbi_B          275 VAIYSKESIIFGASSVDFSLSGRL  298 (354)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSE
T ss_pred             EEEEcCCCcccceeEEEEeCCCCE
Confidence            77776443  47899999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-33  Score=225.14  Aligned_cols=212  Identities=19%  Similarity=0.289  Sum_probs=157.1

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc-------ccccC--------CCCccc------
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-------CSLAK--------DQDSYE------  111 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~--------~~~~~~------  111 (279)
                      .+++.+|.+.|++++|+|++++|++|+.||+|+|||+.++........       +.+.+        ..+..+      
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            347899999999999999999999999999999999987654322110       00000        001100      


Q ss_pred             -----------ceeeecCCCceEEEEeeCcccccCCC-CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeE
Q 023672          112 -----------ASLVVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (279)
Q Consensus       112 -----------~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  179 (279)
                                 ......|...+.++.|       .|+ +..|++|+.|++|++||+++++.+..+......++...|.++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~-------~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQY-------VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBC-------CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred             CCccccCCccceeeccCCCcceEEEEE-------ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence                       0111233344444444       444 457999999999999999999988877433323344489999


Q ss_pred             EECC-CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672          180 AFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       180 ~~~~-~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                      +|++ ++.++++| .|+.|++||++......   ..+    .+|...|.+++|+| ++.+|++|+.||+|++||++++++
T Consensus       212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~---~~~----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          212 SINSLNANMFISGSCDTTVRLWDLRITSRAV---RTY----HGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             EECSSSCCEEEEEETTSCEEEEETTTTCCCC---EEE----CCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEE
T ss_pred             EeecCCCCEEEEEECCCeEEEEECCCCCcce---EEE----CCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcE
Confidence            9987 77888866 99999999998533322   223    68999999999999 899999999999999999999999


Q ss_pred             EEEEeecCC-------CEEEEEEccCCCC
Q 023672          258 LYVLHGQEG-------GVTHVSKLSSAYT  279 (279)
Q Consensus       258 ~~~~~~~~~-------~v~~~~~spdg~~  279 (279)
                      +..+..+..       .|++++|+|+|++
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  312 (380)
T 3iz6_a          284 LQVYNREPDRNDNELPIVTSVAFSISGRL  312 (380)
T ss_dssp             EEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred             EEEecccccccccccCceEEEEECCCCCE
Confidence            888865432       4899999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.2e-33  Score=217.54  Aligned_cols=195  Identities=16%  Similarity=0.246  Sum_probs=163.0

Q ss_pred             eeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ...++.+|.+.|++++|+|++ ++|++|+.|++|++|++.......            .........|...|.+++|   
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~---   73 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF------------GVPVRSFKGHSHIVQDCTL---   73 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE------------EEEEEEEECCSSCEEEEEE---
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc------------cccceEEeCCcccEEEEEE---
Confidence            334788999999999999965 899999999999999986422100            0001133467788998877   


Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                          +|++.+|++|+.|++|++||+.+++.+..+..|..     .|.+++|+|++.+++++ .|+.|++||++.     .
T Consensus        74 ----s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----~  139 (319)
T 3frx_A           74 ----TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIKG-----Q  139 (319)
T ss_dssp             ----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSCEEEEETTS-----C
T ss_pred             ----CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----C
Confidence                77899999999999999999999999999988876     89999999999999966 999999999975     2


Q ss_pred             eeeecccccCCCCCceEEEEEccC-----CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPT-----HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~-----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ....+    .+|...|.+++|+|.     ++..|++++.|+.|++||+++++....+.+|...|.+++|+|||++
T Consensus       140 ~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~  210 (319)
T 3frx_A          140 CLATL----LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL  210 (319)
T ss_dssp             EEEEE----CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred             eEEEE----eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE
Confidence            33333    688999999999992     2348999999999999999999999999999999999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.9e-33  Score=215.97  Aligned_cols=204  Identities=18%  Similarity=0.258  Sum_probs=164.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|++...... .......+.+|...|.+++|+|++++|++|+.|++|+|||+.+++...                 .
T Consensus        41 ~v~~W~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~-----------------~  102 (319)
T 3frx_A           41 TLISWKLTGDDQK-FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------------R  102 (319)
T ss_dssp             EEEEEEEEEETTE-EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----------------E
T ss_pred             cEEEecCCCCCcc-ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE-----------------E
Confidence            5667776543221 112334678999999999999999999999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC------CEE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG------TKI  188 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l  188 (279)
                      ...|...|.++.|       +|++.+|++|+.|++|++||++ ++.+..+..+..     .|.++.|+|.+      ..+
T Consensus       103 ~~~h~~~v~~~~~-------~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A          103 FVGHKSDVMSVDI-------DKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND-----WVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             EECCSSCEEEEEE-------CTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS-----CEEEEEECCC------CCEE
T ss_pred             EccCCCcEEEEEE-------cCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC-----cEEEEEEccCCCCCCCccEE
Confidence            3456778999877       7789999999999999999997 456667766665     89999999854      467


Q ss_pred             EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC
Q 023672          189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG  267 (279)
Q Consensus       189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  267 (279)
                      +++ .|+.|++||+++.    .....+    .+|...|.+++|+| ++.+|++|+.||.|++||+++++++..+..+ ..
T Consensus       170 ~s~~~d~~i~~wd~~~~----~~~~~~----~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  239 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQF----QIEADF----IGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE  239 (319)
T ss_dssp             EEEETTSCEEEEETTTT----EEEEEE----CCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECC-SC
T ss_pred             EEEeCCCEEEEEECCcc----hhheee----cCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCC-Cc
Confidence            755 9999999999873    222333    68999999999999 9999999999999999999999999988854 68


Q ss_pred             EEEEEEccCCCC
Q 023672          268 VTHVSKLSSAYT  279 (279)
Q Consensus       268 v~~~~~spdg~~  279 (279)
                      |.+++|+|+|++
T Consensus       240 v~~~~~sp~~~~  251 (319)
T 3frx_A          240 VFSLAFSPNRYW  251 (319)
T ss_dssp             EEEEEECSSSSE
T ss_pred             EEEEEEcCCCCE
Confidence            999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=216.29  Aligned_cols=191  Identities=19%  Similarity=0.336  Sum_probs=153.7

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec-CCCceEEEEeeCcc
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHM  131 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  131 (279)
                      ...+.+|.+.|.+++|+|+  +|++|+.|++|++||+..+...              ....+... |...|.+++|    
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~--------------~~~~~~~~~h~~~v~~v~~----   66 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT--------------LIDVLDETAHKKAIRSVAW----   66 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE--------------EEEEECTTCCCSCEEEEEE----
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE--------------EEEEEecCCccCCEEEEEE----
Confidence            4467899999999999987  9999999999999999854210              00112122 7778999988    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCC-------CeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATT-------GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR  203 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~  203 (279)
                         +|++.+|++|+.|++|++||+..       .+.+..+..|..     .|.+++|+|++++|+++ .|+.|++||++.
T Consensus        67 ---sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X           67 ---RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             ---CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             ---CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence               67899999999999999999853       345566666665     89999999999999966 999999999965


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC--eEEEEEeecCCCEEEEEEccC
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .+...+....+    .+|...|.+++|+| ++.+|++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+
T Consensus       139 ~~~~~~~~~~~----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          139 SGEEYECISVL----QEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             TCCCCEEEEEE----CCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             CCCCeEEEEEe----ccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            44444444444    68999999999999 8999999999999999999876  678899999999999999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-32  Score=216.05  Aligned_cols=198  Identities=19%  Similarity=0.319  Sum_probs=161.0

Q ss_pred             eeeccCCCCCceEEEEE-----cc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEE
Q 023672           52 QFRTSSIPNNFLKGIKW-----SP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF  125 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~-----~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  125 (279)
                      ....+.+|.+.|++++|     ++ ++++|++|+.|++|++||+.+........          ........|...|.++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~----------~~~~~l~~h~~~V~~~   82 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG----------IPHKALTGHNHFVSDL   82 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE----------EEEEEECCCSSCEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc----------cccchhccCCCceEEE
Confidence            34478899999999999     77 89999999999999999997543211000          0111334577789999


Q ss_pred             EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       126 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      +|       +|++.++++++.|++|++||+++++.+..+..|..     .|.+++|+|++++|+++ .|+.|++||+...
T Consensus        83 ~~-------~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           83 AL-------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             EE-------CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             EE-------CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            87       67889999999999999999999999998888776     89999999999999965 9999999999741


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCC----------cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT----------GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                           ..... ....+|...|.+++|+| ++          .+|++++.|+.|++|| ...+....+.+|...|.+++|+
T Consensus       151 -----~~~~~-~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          151 -----CKFSS-AEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             -----EEEEC-CTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC
T ss_pred             -----ceeee-ecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEEC
Confidence                 11111 11247888999999999 55          6899999999999999 5667788899999999999999


Q ss_pred             cCCCC
Q 023672          275 SSAYT  279 (279)
Q Consensus       275 pdg~~  279 (279)
                      |||++
T Consensus       223 ~~g~~  227 (343)
T 2xzm_R          223 PNGKY  227 (343)
T ss_dssp             TTSSE
T ss_pred             CCCCE
Confidence            99974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.9e-32  Score=212.01  Aligned_cols=188  Identities=22%  Similarity=0.375  Sum_probs=162.1

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|++.++....                 ....|...|.+++|      
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-----------------~~~~h~~~v~~~~~------   73 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-----------------TISGHKLGISDVAW------   73 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE------
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch-----------------hhccCCCceEEEEE------
Confidence            3788999999999999999999999999999999998654321                 23346678888887      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                       +|++++|++++.|+.|++||+++++.+..+..+..     .|.+++|+|++++++++ .|+.|++||++++    +...
T Consensus        74 -~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~  143 (312)
T 4ery_A           74 -SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLK  143 (312)
T ss_dssp             -CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTC----CEEE
T ss_pred             -cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----EEEE
Confidence             77899999999999999999999999998888776     89999999999999966 9999999999874    2223


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~~  279 (279)
                      .+    ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.. +..++..++|+|+|++
T Consensus       144 ~~----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (312)
T 4ery_A          144 TL----PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  206 (312)
T ss_dssp             EE----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred             Ee----cCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE
Confidence            33    57888999999999 899999999999999999999998877654 5668999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-32  Score=218.89  Aligned_cols=210  Identities=18%  Similarity=0.329  Sum_probs=164.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++...      .+.+|.+.|.+++|+|++++|++|+.|++|++||+.++...                  .
T Consensus       146 ~i~iwd~~~~~~~~------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------------------~  201 (393)
T 1erj_A          146 LIRIWDIENRKIVM------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------------------L  201 (393)
T ss_dssp             CEEEEETTTTEEEE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------------------E
T ss_pred             eEEEEECCCCcEEE------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE------------------E
Confidence            57788988776554      67899999999999999999999999999999999876431                  1


Q ss_pred             eecCCCceEEEEeeCcccccCC-CCcEEEEecCCCcEEEEECCCCeeeEEEeccCc--cccccceeeEEECCCCCEEEEe
Q 023672          115 VVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      ...+...+..++|       +| ++.+|++|+.|+.|++||+++++.+..+.....  .++...|.+++|+|++++|+++
T Consensus       202 ~~~~~~~v~~~~~-------~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          202 TLSIEDGVTTVAV-------SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             EEECSSCEEEEEE-------CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEcCCCcEEEEE-------ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence            2234456777777       55 788999999999999999999988776632111  1223389999999999999976


Q ss_pred             -cCCeEEEEEccCCCCceee----eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672          192 -YNKSVRVFDVHRPGRDFEK----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  266 (279)
                       .|+.|++||++........    .......+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++++..+.+|..
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence             9999999999863211100    0011112258899999999999 899999999999999999999999999999999


Q ss_pred             CEEEEEEccC
Q 023672          267 GVTHVSKLSS  276 (279)
Q Consensus       267 ~v~~~~~spd  276 (279)
                      .|.+++|+|+
T Consensus       354 ~v~~v~~~~~  363 (393)
T 1erj_A          354 SVISVAVANG  363 (393)
T ss_dssp             CEEEEEECSS
T ss_pred             CEEEEEecCC
Confidence            9999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-32  Score=210.39  Aligned_cols=212  Identities=18%  Similarity=0.217  Sum_probs=159.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+++||+.....    .....+.+|.+.|++++|+|  ++++|++|+.|++|+|||+.++....               .
T Consensus        32 ~v~iw~~~~~~~----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~---------------~   92 (297)
T 2pm7_B           32 TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ---------------I   92 (297)
T ss_dssp             CEEEEEBCSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC---------------C
T ss_pred             EEEEEecCCCCc----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE---------------E
Confidence            577888764321    11236789999999999986  48999999999999999998653210               0


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECCC------
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPT------  184 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~------  184 (279)
                      .....|...|.+++|+|.     .++.+|++++.|+.|++||++++..  ...+..|..     .|.+++|+|+      
T Consensus        93 ~~~~~h~~~v~~v~~~p~-----~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           93 AVHAVHSASVNSVQWAPH-----EYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDG  162 (297)
T ss_dssp             EEECCCSSCEEEEEECCG-----GGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-----CEEEEEECCCC-----
T ss_pred             EEeecCCCceeEEEeCcC-----CCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-----ccceEeecCCcccccc
Confidence            122346678999988442     1278999999999999999987632  344555554     8999999997      


Q ss_pred             -------CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC--CcEEEEEeCCCcEEEEecCC
Q 023672          185 -------GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       185 -------~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~l~~~~~dg~i~~wd~~~  254 (279)
                             +++|+++ .|+.|++||++++.........+    .+|...|.+++|+|+.  +.+|++++.|++|+|||+++
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                   4678865 99999999998743333333344    6899999999999932  58999999999999999987


Q ss_pred             Ce---EEEEE--eecCCCEEEEEEccCCCC
Q 023672          255 ME---LLYVL--HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       255 ~~---~~~~~--~~~~~~v~~~~~spdg~~  279 (279)
                      ..   ....+  ..|...|.+++|+|+|++
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  268 (297)
T 2pm7_B          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNV  268 (297)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             CCCccceeeeecccCCCcEEEEEECCCCCE
Confidence            43   12233  457889999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-33  Score=224.43  Aligned_cols=226  Identities=19%  Similarity=0.296  Sum_probs=164.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc--------------ccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD--------------VNA  100 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~--------------~~~  100 (279)
                      .+++||..++....      .+.+|...|.+++|+|++++|++|+.|+.|++|++.+......              ...
T Consensus        89 ~v~iWd~~~~~~~~------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a           89 RLIVWNALTSQKTH------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             EEEEEETTTTEEEE------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred             eEEEEECCCCccce------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence            45677777666544      6778999999999999999999999999999999875321000              000


Q ss_pred             ccc---------cCCCCcccceee---------------ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC
Q 023672          101 CSL---------AKDQDSYEASLV---------------VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT  156 (279)
Q Consensus       101 ~~~---------~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~  156 (279)
                      +..         ....+..+....               ..|...|.++.|+      ++++.+|++|+.|++|++||++
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~~l~sgs~D~~v~~wd~~  236 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN------SLNANMFISGSCDTTVRLWDLR  236 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC------SSSCCEEEEEETTSCEEEEETT
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee------cCCCCEEEEEECCCeEEEEECC
Confidence            000         001111111111               2234456666553      2378899999999999999998


Q ss_pred             -CCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC
Q 023672          157 -TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH  234 (279)
Q Consensus       157 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  234 (279)
                       .++.+..+..|..     .|.+++|+|++++|+++ .|+.|++||++++ .....+.........+...|.+++|+| +
T Consensus       237 ~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~-~  309 (380)
T 3iz6_a          237 ITSRAVRTYHGHEG-----DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFSI-S  309 (380)
T ss_dssp             TTCCCCEEECCCSS-----CCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEECS-S
T ss_pred             CCCcceEEECCcCC-----CeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEECC-C
Confidence             4567777877776     89999999999999976 9999999999984 222222111111123344689999999 9


Q ss_pred             CcEEEEEeCCCcEEEEecCCCeEEEEE----eecCCCEEEEEEccCCCC
Q 023672          235 TGMLAIGSYSQTSAIYREDNMELLYVL----HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       235 ~~~l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~~v~~~~~spdg~~  279 (279)
                      +.+|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|||++
T Consensus       310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred             CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence            999999999999999999999988877    679999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-32  Score=218.40  Aligned_cols=205  Identities=13%  Similarity=0.181  Sum_probs=154.4

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeC------CCeEEEEeCCCCcccccccc-----------c-------cccCCCCccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSE------DKTLRIFSLPENGISYDVNA-----------C-------SLAKDQDSYE  111 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~------dg~i~iwd~~~~~~~~~~~~-----------~-------~~~~~~~~~~  111 (279)
                      +.+|.+.|++++|+|||++|++|+.      |+.|++|+..++........           .       .+....++.+
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v  117 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV  117 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence            4569999999999999999999997      78899999876543111100           0       0000111111


Q ss_pred             c--------------eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccccccee
Q 023672          112 A--------------SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF  177 (279)
Q Consensus       112 ~--------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  177 (279)
                      .              .....|...|.+++|       +|++++|++|+.|+.|++||+++++.+..+..|..     .|.
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~-------spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-----~v~  185 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSV-------FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-----EVN  185 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC-----CEE
Confidence            1              011134445666655       88999999999999999999999999999988776     899


Q ss_pred             eEEECCCCC-EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          178 SVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       178 ~~~~~~~~~-~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      +++|+|++. +++++ .|+.|++||++++ +.....     ....+...+.+++|+|+++.+|++|+.|+.|++||++++
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~-----~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRI-----DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBC-----CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCC-ceeeee-----eeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence            999999875 55554 9999999999874 222211     114567789999999966789999999999999999999


Q ss_pred             eEEEEEeecCCCEEEEEEccCCC
Q 023672          256 ELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +++..+.+|...|++++|+|+|.
T Consensus       260 ~~~~~~~~~~~~v~~l~~sp~~~  282 (357)
T 4g56_B          260 DSAQTSAVHSQNITGLAYSYHSS  282 (357)
T ss_dssp             GGCEEECCCSSCEEEEEECSSSS
T ss_pred             cEeEEEeccceeEEEEEEcCCCC
Confidence            99999999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.9e-32  Score=211.25  Aligned_cols=192  Identities=17%  Similarity=0.263  Sum_probs=153.9

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+...              . .......|..+|.+++|+|.    
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--------------~-~~~~l~gH~~~V~~v~~s~~----   64 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--------------K-LIDTLTGHEGPVWRVDWAHP----   64 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--------------C-CCEEECCCSSCEEEEEECCG----
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--------------E-EEEEEccccCCeEEEEecCC----
Confidence            5778999999999999999999999999999999974311              0 01133467789999988431    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                       .++.+|++|+.|++|++||+++++  .+..+..|..     .|.+++|+|+  +.+|+++ .|+.|++||++.+... .
T Consensus        65 -~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~  137 (297)
T 2pm7_B           65 -KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-S  137 (297)
T ss_dssp             -GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-C
T ss_pred             -CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC-----ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-e
Confidence             147899999999999999999874  4455555554     8999999997  7888865 9999999999874211 1


Q ss_pred             eeeecccccCCCCCceEEEEEccCC------------CcEEEEEeCCCcEEEEecCCCe----EEEEEeecCCCEEEEEE
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTH------------TGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~------------~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~  273 (279)
                       ...+    .+|...|.+++|+|+.            +.+|++|+.|++|++||+++++    ++..+.+|...|.+++|
T Consensus       138 -~~~~----~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          138 -PIII----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             -CEEE----ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             -eeee----ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence             1122    5888999999999931            5699999999999999998765    66788999999999999


Q ss_pred             ccCC
Q 023672          274 LSSA  277 (279)
Q Consensus       274 spdg  277 (279)
                      +|++
T Consensus       213 sp~~  216 (297)
T 2pm7_B          213 SPTV  216 (297)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.6e-32  Score=217.22  Aligned_cols=213  Identities=20%  Similarity=0.320  Sum_probs=161.6

Q ss_pred             eeeEecCCCCcccceeeeee------------ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFR------------TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  102 (279)
                      .+.+|++.++.....+....            ....+...|.+++|+|++++|++|+.|++|+|||+.+++...      
T Consensus        86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~------  159 (393)
T 1erj_A           86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM------  159 (393)
T ss_dssp             CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE------
T ss_pred             cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE------
Confidence            45677877766544221110            011233459999999999999999999999999998654311      


Q ss_pred             ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (279)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (279)
                                 ....|...|.+++|       +|++.+|++++.|++|++||+++++....+....      .+.+++|+
T Consensus       160 -----------~~~~h~~~v~~~~~-------~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~  215 (393)
T 1erj_A          160 -----------ILQGHEQDIYSLDY-------FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED------GVTTVAVS  215 (393)
T ss_dssp             -----------EECCCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEEC
T ss_pred             -----------EEccCCCCEEEEEE-------cCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC------CcEEEEEE
Confidence                       23456778999987       6789999999999999999999999887776544      78899999


Q ss_pred             C-CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----
Q 023672          183 P-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----  255 (279)
Q Consensus       183 ~-~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----  255 (279)
                      | ++++++++ .|+.|++||++++ .....+........+|...|.+++|+| ++.+|++|+.|+.|++||+++.     
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            9 88999866 9999999999873 322222111122257899999999999 8999999999999999999753     


Q ss_pred             -------eEEEEEeecCCCEEEEEEccCCCC
Q 023672          256 -------ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       256 -------~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                             .+...+.+|...|.+++|+|+|++
T Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  324 (393)
T 1erj_A          294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEY  324 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCE
T ss_pred             ccCCCCCcceEEEecccCcEEEEEECCCCCE
Confidence                   356678899999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.1e-32  Score=213.38  Aligned_cols=207  Identities=17%  Similarity=0.282  Sum_probs=161.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.......   ......+|.+.|.+++|+|++++|++|+.|++|+|||+..+....               ...
T Consensus        39 ~i~iw~~~~~~~~~---~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~---------------~~~  100 (345)
T 3fm0_A           39 RIRIWGTEGDSWIC---KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC---------------VTT  100 (345)
T ss_dssp             CEEEEEEETTEEEE---EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE---------------EEE
T ss_pred             eEEEEEcCCCccee---eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE---------------EEE
Confidence            56778776654321   112457899999999999999999999999999999987542110               012


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe---eeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      ...|...|.+++|       +|++++|++|+.|++|++||++++.   .+..+..+..     .|.+++|+|++.+|+++
T Consensus       101 ~~~h~~~v~~v~~-------sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~  168 (345)
T 3fm0_A          101 LEGHENEVKSVAW-------APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-----DVKHVVWHPSQELLASA  168 (345)
T ss_dssp             ECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-----CEEEEEECSSSSCEEEE
T ss_pred             ccCCCCCceEEEE-------eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-----CeEEEEECCCCCEEEEE
Confidence            3456778999988       7789999999999999999998764   3445555554     89999999999999966


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC---------------C
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---------------M  255 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~---------------~  255 (279)
                       .|+.|++||++.+.  ......+    .+|...|.+++|+| ++.+|++|+.|++|++||...               .
T Consensus       169 s~d~~i~~w~~~~~~--~~~~~~~----~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~  241 (345)
T 3fm0_A          169 SYDDTVKLYREEEDD--WVCCATL----EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW  241 (345)
T ss_dssp             ETTSCEEEEEEETTE--EEEEEEE----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred             eCCCcEEEEEecCCC--EEEEEEe----cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence             99999999998631  1222233    68999999999999 899999999999999999632               2


Q ss_pred             eEEEEEee-cCCCEEEEEEccCCC
Q 023672          256 ELLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       256 ~~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                      +++..+.+ |...|.+++|+|++.
T Consensus       242 ~~~~~~~~~h~~~v~~v~~~~~~~  265 (345)
T 3fm0_A          242 KCICTLSGFHSRTIYDIAWCQLTG  265 (345)
T ss_dssp             EEEEEECSSCSSCEEEEEECTTTC
T ss_pred             ceeEEecCCCCCcEEEEEEecCCC
Confidence            34556665 888999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-33  Score=223.20  Aligned_cols=213  Identities=15%  Similarity=0.207  Sum_probs=159.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.++..    .....+.+|.+.|.+++|+|++++|++++.|++|++||+.++....              ....
T Consensus        34 ~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~--------------~~~~   95 (377)
T 3dwl_C           34 QVELYEQDGNGW----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK--------------QTLV   95 (377)
T ss_dssp             CBCEEEEETTEE----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC--------------CEEE
T ss_pred             EEEEEEccCCce----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee--------------eeeE
Confidence            567788776521    1223678999999999999999999999999999999998754100              0012


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe---eeEEEec-cCccccccceeeEEECCCCCEEEE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRA-YDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      ...+...|.+++|       +|++.+|++++.|+.|++||+++++   ....+.. +..     .|.+++|+|+++++++
T Consensus        96 ~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           96 LLRLNRAATFVRW-------SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-----TILSLDWHPNNVLLAA  163 (377)
T ss_dssp             CCCCSSCEEEEEC-------CTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-----CEEEEEECTTSSEEEE
T ss_pred             ecccCCceEEEEE-------CCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-----CeEEEEEcCCCCEEEE
Confidence            3346678998877       7789999999999999999999886   3566665 544     8999999999999996


Q ss_pred             e-cCCeEEEEEccCCCCcee----------eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE--
Q 023672          191 G-YNKSVRVFDVHRPGRDFE----------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--  257 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~--  257 (279)
                      + .|+.|++||++.......          ........+ +|...|.+++|+| ++.+|++++.||.|++||+++++.  
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            6 999999999964211000          011222233 8889999999999 899999999999999999999987  


Q ss_pred             --EEEEeecCCCEEEEEEccCCCC
Q 023672          258 --LYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       258 --~~~~~~~~~~v~~~~~spdg~~  279 (279)
                        +..+.+|..+|.+++|+|||++
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~  265 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAI  265 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEE
T ss_pred             eeeEeecCCCCceEEEEEcCCCCE
Confidence              7889999999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=210.96  Aligned_cols=213  Identities=15%  Similarity=0.214  Sum_probs=156.6

Q ss_pred             eeeeeEecCCCCcccceeeeeecc-C-CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTS-S-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .-.+++||+..+...    ....+ . +|.+.|.+++|+|++++|++|+.|++|+|||+.........          ..
T Consensus        33 D~~i~lw~~~~~~~~----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~----------~~   98 (330)
T 2hes_X           33 DRKIKLVSVKYDDFT----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE----------MD   98 (330)
T ss_dssp             SSCEEEEECSSSCCE----EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CC----------CE
T ss_pred             CCEEEEEEecCCCeE----EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccc----------ce
Confidence            336778888764321    11122 3 49999999999999999999999999999998643210000          00


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC----eeeEEEeccCccccccceeeEEECCCCC
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                      .......|...|.+++|       +|++++|++|+.|++|++||++..    +.+..+..|..     .|.+++|+|++.
T Consensus        99 ~~~~~~~h~~~V~~v~~-------sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~  166 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAW-------SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-----DVKHVIWHPSEA  166 (330)
T ss_dssp             EEEEEC----CEEEEEE-------CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-----CEEEEEECSSSS
T ss_pred             eEEEEcCCCCcEEEEEE-------CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-----ceEEEEECCCCC
Confidence            01123457778999987       778999999999999999999532    45566766665     899999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC--CcEEEEEeCCCcEEEEecCCC--------
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNM--------  255 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~l~~~~~dg~i~~wd~~~~--------  255 (279)
                      +|+++ .|+.|++||...+  .......+    .+|...|.+++|+| +  +.+|++|+.|++|++||++++        
T Consensus       167 ~l~s~s~D~~i~iW~~~~~--~~~~~~~~----~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDD--DWECVAVL----NGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             EEEEEETTSCEEEEEEETT--EEEEEEEE----CCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             EEEEEcCCCeEEEEECCCC--CeeEEEEc----cCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            99966 9999999999763  12233334    68999999999999 6  668999999999999999765        


Q ss_pred             eEEEEEee-cCCCEEEEEEccCCC
Q 023672          256 ELLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       256 ~~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                      .+...+.. |...|.+++|+|++.
T Consensus       240 ~~~~~~~~~h~~~v~~v~~s~~~~  263 (330)
T 2hes_X          240 VCEAILPDVHKRQVYNVAWGFNGL  263 (330)
T ss_dssp             EEEEECCSCCSSCEEEEEECTTSC
T ss_pred             EEeeecccccccceEEEEEcCCCE
Confidence            34555555 889999999998763

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-31  Score=206.88  Aligned_cols=208  Identities=20%  Similarity=0.248  Sum_probs=157.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+|+..+++...      .+.+|...|.+++|+|++++|++|+.|+.|++||+.++....                 .
T Consensus        46 ~i~iw~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----------------~  102 (312)
T 4ery_A           46 LIKIWGAYDGKFEK------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK-----------------T  102 (312)
T ss_dssp             CEEEEETTTCCEEE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------E
T ss_pred             eEEEEeCCCcccch------hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE-----------------E
Confidence            56788887766544      677899999999999999999999999999999998754321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...|.++.|       +|++.+|++++.|+.|++||+++++.+..+..+..     .|.+++|+|++++++++ .|
T Consensus       103 ~~~~~~~v~~~~~-------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A          103 LKGHSNYVFCCNF-------NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EECCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCCCEEEEEE-------cCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCC
Confidence            2346678888877       67889999999999999999999999888887765     89999999999999966 99


Q ss_pred             CeEEEEEccCCCCceeeeee------------------------------------cccccCCCCCce--EEEEEccCCC
Q 023672          194 KSVRVFDVHRPGRDFEKYST------------------------------------LKGNKEGQAGIM--SAIAFSPTHT  235 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~v--~~~~~sp~~~  235 (279)
                      +.|++||++++. .......                                    ....+.+|....  ....+++.++
T Consensus       171 ~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          171 GLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             SCEEEEETTTCC-EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CcEEEEECCCCc-eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            999999998732 1111000                                    000011222211  1123332256


Q ss_pred             cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       236 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+|++|+.||.|++||+.+++++..+.+|...|.+++|+|+++
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  292 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN  292 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence            6777888888888888888888888899999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.1e-31  Score=209.58  Aligned_cols=207  Identities=14%  Similarity=0.200  Sum_probs=157.8

Q ss_pred             eeeEecCCCCcccc-eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYH-FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+++||+....... .......+.+|.+.|.+++|+|++.+|++|+.|++|++||+.++....                 
T Consensus        50 ~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~-----------------  112 (343)
T 2xzm_R           50 TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-----------------  112 (343)
T ss_dssp             CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE-----------------
T ss_pred             EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-----------------
Confidence            57788876544321 112344688999999999999999999999999999999998764321                 


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--------
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--------  185 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------  185 (279)
                      ....|...|.+++|       +|++++|++++.|++|++||+.... .....  ....+...|.+++|+|++        
T Consensus       113 ~~~~h~~~v~~v~~-------sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~  182 (343)
T 2xzm_R          113 RFVGHQSEVYSVAF-------SPDNRQILSAGAEREIKLWNILGEC-KFSSA--EKENHSDWVSCVRYSPIMKSANKVQP  182 (343)
T ss_dssp             EEECCCSCEEEEEE-------CSSTTEEEEEETTSCEEEEESSSCE-EEECC--TTTSCSSCEEEEEECCCCCSCSCCCS
T ss_pred             EEcCCCCcEEEEEE-------CCCCCEEEEEcCCCEEEEEeccCCc-eeeee--cccCCCceeeeeeeccccccccccCC
Confidence            23457778999987       7789999999999999999998433 22222  111222379999999987        


Q ss_pred             --CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEE
Q 023672          186 --TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVL  261 (279)
Q Consensus       186 --~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~  261 (279)
                        .+++++ .|+.|++||...     .....+    .+|...|.+++|+| ++.+|++|+.||.|++||+++ ..+...+
T Consensus       183 ~~~~l~s~~~d~~i~iwd~~~-----~~~~~~----~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~  252 (343)
T 2xzm_R          183 FAPYFASVGWDGRLKVWNTNF-----QIRYTF----KAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREF  252 (343)
T ss_dssp             SCCEEEEEETTSEEEEEETTT-----EEEEEE----ECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred             CCCEEEEEcCCCEEEEEcCCC-----ceeEEE----cCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceee
Confidence              577755 999999999543     222333    68889999999999 999999999999999999954 4444444


Q ss_pred             eecCCCEEEEEEccCCCC
Q 023672          262 HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       262 ~~~~~~v~~~~~spdg~~  279 (279)
                      . +...|.+++|+|++++
T Consensus       253 ~-~~~~v~~v~~sp~~~~  269 (343)
T 2xzm_R          253 D-AGSTINQIAFNPKLQW  269 (343)
T ss_dssp             E-CSSCEEEEEECSSSCE
T ss_pred             c-CCCcEEEEEECCCCCE
Confidence            3 5567999999999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-32  Score=214.30  Aligned_cols=192  Identities=16%  Similarity=0.251  Sum_probs=149.3

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++...               .......|...|.+++|+|.    
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---------------~~~~l~gH~~~V~~v~~~~~----   68 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---------------LIADLRGHEGPVWQVAWAHP----   68 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------EEEEEECCSSCEEEEEECCG----
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------EEEEEcCCCccEEEEEeCCC----
Confidence            56789999999999999999999999999999999764210               00123467789999988431    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                       .++.+|++|+.|++|++||+++++  ....+..|..     .|.+++|+|+  +.+|+++ .|+.|++||++.. ....
T Consensus        69 -~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~-~~~~  141 (316)
T 3bg1_A           69 -MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS-----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGE-GQWE  141 (316)
T ss_dssp             -GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS-----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSS-SCEE
T ss_pred             -CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC-----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC-CCcc
Confidence             147899999999999999999874  4455555654     8999999998  7788866 9999999999863 2121


Q ss_pred             eeeecccccCCCCCceEEEEEccCC-----------------CcEEEEEeCCCcEEEEecCCC---eEEEEEeecCCCEE
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTH-----------------TGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEGGVT  269 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~-----------------~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~  269 (279)
                      ..    ....+|...|.+++|+| +                 +.+|++|+.|+.|++||++..   +++..+.+|..+|+
T Consensus       142 ~~----~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~  216 (316)
T 3bg1_A          142 VK----KINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR  216 (316)
T ss_dssp             EC----CBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE
T ss_pred             ee----eeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE
Confidence            11    22368889999999999 5                 468999999999999999765   46778889999999


Q ss_pred             EEEEccCC
Q 023672          270 HVSKLSSA  277 (279)
Q Consensus       270 ~~~~spdg  277 (279)
                      +++|+|++
T Consensus       217 ~v~~sp~~  224 (316)
T 3bg1_A          217 DVAWAPSI  224 (316)
T ss_dssp             EEECCCCS
T ss_pred             EEEecCCC
Confidence            99999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-31  Score=211.12  Aligned_cols=190  Identities=12%  Similarity=0.153  Sum_probs=146.9

Q ss_pred             cCCCCCceEEEEEccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ...+...+.+++|+|||++|++  ++.|++|+|||+.++...                  ....+...|.+++|      
T Consensus       129 ~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~------------------~~~~~~~~V~~v~f------  184 (365)
T 4h5i_A          129 STNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK------------------FEIETRGEVKDLHF------  184 (365)
T ss_dssp             CCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE------------------EEEECSSCCCEEEE------
T ss_pred             cCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE------------------EEeCCCCceEEEEE------
Confidence            3456677999999999998764  557999999999876432                  22345667888877      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC----eEEEEEccCCCCce
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVRVFDVHRPGRDF  208 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~----~i~~~d~~~~~~~~  208 (279)
                       +|+++++++++.+ .+.+|+..+++.+.......   +...|.+++|+|++..++++ .|+    .+++||+.......
T Consensus       185 -spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~  259 (365)
T 4h5i_A          185 -STDGKVVAYITGS-SLEVISTVTGSCIARKTDFD---KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV  259 (365)
T ss_dssp             -CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCC---TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred             -ccCCceEEeccce-eEEEEEeccCcceeeeecCC---CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc
Confidence             7899999999855 56677777776554433221   11278999999999999854 665    68889987642222


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE-eecCCCEEEEEEccCCCC
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~spdg~~  279 (279)
                      .....+    .+|...|++++|+| ++.+|++|+.|++|+|||+++++++..+ .+|..+|++++|||||++
T Consensus       260 ~~~~~~----~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~  326 (365)
T 4h5i_A          260 LRSKQV----TNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY  326 (365)
T ss_dssp             EEEEEE----ESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred             eeeeee----cCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence            222223    68888999999999 9999999999999999999999999875 789999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.8e-31  Score=222.26  Aligned_cols=183  Identities=26%  Similarity=0.443  Sum_probs=156.6

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|...|.+++|+|++++|++++.|+.|++||.... ..                 .....+...|.+++|       
T Consensus       380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~-----------------~~~~~~~~~v~~~~~-------  434 (577)
T 2ymu_A          380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL-----------------QTLTGHSSSVWGVAF-------  434 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-EE-----------------EEEECCSSCEEEEEE-------
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-EE-----------------EEecCCCCCeEEEEE-------
Confidence            57789999999999999999999999999999996532 10                 123456678888876       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +|++++|++++.|+.|++||+ +++.+..+..+..     .|.+++|+|++++|+++ .|+.|++||...     +....
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~-----~v~~~~~spd~~~las~~~d~~i~iw~~~~-----~~~~~  503 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQT  503 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSEEEEEETTS-----CEEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-----CEEEE
Confidence            778999999999999999996 5667777777765     89999999999999966 999999999643     23334


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +    .+|...|++++|+| ++.+|++++.||.|++||. +++++..+.+|.+.|++++|+|||++
T Consensus       504 ~----~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~  563 (577)
T 2ymu_A          504 L----TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT  563 (577)
T ss_dssp             E----ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             E----eCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            4    68899999999999 8999999999999999995 78899999999999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.1e-32  Score=222.95  Aligned_cols=192  Identities=13%  Similarity=0.122  Sum_probs=150.6

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ...+|...|+||+|+| ++++||+|+.||+|+|||+.++....               ......|...|.+++|+|.   
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~---------------~~~~~gH~~~V~~l~f~p~---  175 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT---------------FIKGIGAGGSITGLKFNPL---  175 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE---------------EECCCSSSCCCCEEEECSS---
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee---------------EEEccCCCCCEEEEEEeCC---
Confidence            4567889999999999 56799999999999999998653211               0122357789999998543   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                         ++.+|++|+.|++|++||++++........+..   ...+.+++|+|++.+|++| .|+.|++||++.     +...
T Consensus       176 ---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-----~~~~  244 (435)
T 4e54_B          176 ---NTNQFYASSMEGTTRLQDFKGNILRVFASSDTI---NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-----KELW  244 (435)
T ss_dssp             ---CTTEEEEECSSSCEEEEETTSCEEEEEECCSSC---SCCCCCEEEETTTTEEEEECSSSBEEEEESSS-----CBCC
T ss_pred             ---CCCEEEEEeCCCEEEEeeccCCceeEEeccCCC---CccEEEEEECCCCCEEEEEeCCCcEeeeccCc-----ceeE
Confidence               678999999999999999987654433332221   1257889999999999977 999999999975     2222


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE---EEeecCCCEEEEEEccCCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY---VLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~spdg~~  279 (279)
                      .+    .+|...|.+++|+|++..+|++|+.|+.|++||+++.+...   ...+|..+|++++|+|||++
T Consensus       245 ~~----~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~  310 (435)
T 4e54_B          245 NL----RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR  310 (435)
T ss_dssp             CS----BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred             EE----ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence            33    68999999999999555689999999999999998876433   34578999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-31  Score=226.72  Aligned_cols=196  Identities=19%  Similarity=0.311  Sum_probs=163.9

Q ss_pred             eccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           54 RTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      ..+.+|.+.|++++|+|++ ++|+||+.|++|++|++.+.....            .........|...|.+++|     
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~v~~-----  438 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------GVAQRRLTGHSHFVEDVVL-----  438 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------CEEEEEEECCSSCEEEEEE-----
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------ccccceecCCCCcEEEEEE-----
Confidence            3678999999999999864 789999999999999998542210            0111234567788999987     


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                        +|++++|++|+.|++|++||+.+++....+..|..     .|.+++|+|++++|+++ .|+.|++||+...     ..
T Consensus       439 --s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-----~~  506 (694)
T 3dm0_A          439 --SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-----CK  506 (694)
T ss_dssp             --CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSC-----EE
T ss_pred             --CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-----cc
Confidence              77899999999999999999999999998888876     89999999999999966 9999999998752     22


Q ss_pred             eecccccCCCCCceEEEEEccCCC--cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..+.....+|...|.+++|+| ++  ..|++|+.|+.|++||++++++...+.+|.+.|++++|+|||++
T Consensus       507 ~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          507 YTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence            223333368899999999999 55  58999999999999999999999999999999999999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.3e-31  Score=207.96  Aligned_cols=201  Identities=19%  Similarity=0.315  Sum_probs=158.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|++++|++|+.||.|++||+.++.....             .......|...|.+++|+|.    
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~----   68 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE-------------LSDSWRAHDSSIVAIDWASP----   68 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE-------------EEEEEECCSSCEEEEEECCG----
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce-------------ecceeccCCCcEEEEEEcCC----
Confidence            5679999999999999999999999999999999986432100             01123457789999988431    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCC---------eeeEEEeccCccccccceeeEEECCC--CCEEEEe-cCCeEEEEEcc
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTG---------LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVH  202 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~  202 (279)
                       .++.+|++++.|+.|++||++++         +....+..+..     .|.+++|+|+  +.+++++ .|+.|++||++
T Consensus        69 -~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           69 -EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             -GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             -CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence             15889999999999999999887         45666666655     8999999999  9988865 99999999998


Q ss_pred             CCCCceeee----------------------------------------------------eecccccCCCCCceEEEEE
Q 023672          203 RPGRDFEKY----------------------------------------------------STLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       203 ~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~  230 (279)
                      ++.......                                                    ........+|...|.+++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            642110000                                                    0002223578999999999


Q ss_pred             ccCCC----cEEEEEeCCCcEEEEecCCC----------------------------------------------eEEEE
Q 023672          231 SPTHT----GMLAIGSYSQTSAIYREDNM----------------------------------------------ELLYV  260 (279)
Q Consensus       231 sp~~~----~~l~~~~~dg~i~~wd~~~~----------------------------------------------~~~~~  260 (279)
                      +| ++    .+|++|+.||.|++||++++                                              +++..
T Consensus       223 ~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          223 AP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             CC-CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             CC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence            99 76    89999999999999999875                                              66778


Q ss_pred             EeecCCCEEEEEEccCCCC
Q 023672          261 LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       261 ~~~~~~~v~~~~~spdg~~  279 (279)
                      +.+|...|++++|+|+|++
T Consensus       302 ~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          302 HDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             ECTTSSCEEEEEECSSSCC
T ss_pred             EecccccEEEEEEcCCCCE
Confidence            8889999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-31  Score=209.17  Aligned_cols=211  Identities=18%  Similarity=0.213  Sum_probs=157.5

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      -.+++||+.++...    ....+.+|.+.|.+++|+|  ++++|++|+.|++|++||++++....               
T Consensus        35 ~~v~lwd~~~~~~~----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~---------------   95 (316)
T 3bg1_A           35 RSVKIFDVRNGGQI----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK---------------   95 (316)
T ss_dssp             TEEEEEEEETTEEE----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE---------------
T ss_pred             CeEEEEEecCCCcE----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE---------------
Confidence            36788888765321    1236779999999999986  48999999999999999998642110               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeee---EEEeccCccccccceeeEEECCC----
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR---CTYRAYDAVDEITAAFSVAFNPT----  184 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~----  184 (279)
                      ......|...|.+++|+|.     .++.+|++|+.|+.|++||++++...   ..+..|.     ..|.+++|+|+    
T Consensus        96 ~~~~~~h~~~V~~v~~~p~-----~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           96 SHEHAGHDSSVNSVCWAPH-----DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT-----IGCNAVSWAPAVVPG  165 (316)
T ss_dssp             EEEECCCSSCCCEEEECCT-----TTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS-----SCBCCCEECCCCCC-
T ss_pred             EEEccCCCCceEEEEECCC-----CCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc-----CCcceEEEccccCCc
Confidence            0122346678999988442     12789999999999999999876322   2223333     37889999997    


Q ss_pred             -------------CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC----cEEEEEeCCCc
Q 023672          185 -------------GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT----GMLAIGSYSQT  246 (279)
Q Consensus       185 -------------~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~~l~~~~~dg~  246 (279)
                                   +++|+++ .|+.|++||++.. ........+    .+|...|.+++|+| ++    .+|++|+.|++
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l----~~h~~~V~~v~~sp-~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKL----EAHSDWVRDVAWAP-SIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECC----BCCSSCEEEEECCC-CSSCSCCEEEEEETTCE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCC-Cccceeeec----ccCCCceEEEEecC-CCCCCCceEEEEcCCCe
Confidence                         3677865 9999999999752 222233333    68999999999999 54    78999999999


Q ss_pred             EEEEecCCC---e-EEEEEeecCCCEEEEEEccCCCC
Q 023672          247 SAIYREDNM---E-LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       247 i~~wd~~~~---~-~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |++||+.+.   . ....+..|...|.+++|+|+|++
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI  276 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred             EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence            999999763   1 23456678999999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-30  Score=207.59  Aligned_cols=197  Identities=15%  Similarity=0.268  Sum_probs=158.1

Q ss_pred             eeccCCCCCceEEEEEccC---CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672           53 FRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (279)
                      ...+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+...               ........|...|.+++|  
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~--   94 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------TIPKAQQMHTGPVLDVCW--   94 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------EEEEEEEECSSCEEEEEE--
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------eeEEEeccccCCEEEEEE--
Confidence            3478899999999999998   69999999999999999986211               111234457788999988  


Q ss_pred             cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEE--CCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG-YNKSVRVFDVHRPGR  206 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~-~d~~i~~~d~~~~~~  206 (279)
                           +|++.+|++++.|+.|++||+++++..... .+..     .|.+++|  +|++.+++++ .|+.|++||++++. 
T Consensus        95 -----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-  162 (368)
T 3mmy_A           95 -----SDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDA-----PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-  162 (368)
T ss_dssp             -----CTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSS-----CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-
T ss_pred             -----CcCCCEEEEEcCCCcEEEEEcCCCCceeec-cccC-----ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-
Confidence                 778999999999999999999999876643 3444     8999999  8999988865 89999999998642 


Q ss_pred             ceeeee--------------------------------------------------------------------------
Q 023672          207 DFEKYS--------------------------------------------------------------------------  212 (279)
Q Consensus       207 ~~~~~~--------------------------------------------------------------------------  212 (279)
                      ....+.                                                                          
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            111000                                                                          


Q ss_pred             ---------ecccccCCCCC------------ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE
Q 023672          213 ---------TLKGNKEGQAG------------IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (279)
Q Consensus       213 ---------~~~~~~~~~~~------------~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  271 (279)
                               .....+.+|..            .|.+++|+| ++.+|++|+.||.|++||+++++++..+..|..+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC  321 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence                     00001123333            699999999 89999999999999999999999999999999999999


Q ss_pred             EEccCCCC
Q 023672          272 SKLSSAYT  279 (279)
Q Consensus       272 ~~spdg~~  279 (279)
                      +|+|||++
T Consensus       322 ~~s~~g~~  329 (368)
T 3mmy_A          322 CFNHNGNI  329 (368)
T ss_dssp             EECTTSSC
T ss_pred             EECCCCCe
Confidence            99999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-30  Score=220.55  Aligned_cols=198  Identities=17%  Similarity=0.236  Sum_probs=158.2

Q ss_pred             ccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+|.+.|++++|+|++. .|++|+.|++|++||..+++...                 ....|...|.+++|      
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-----------------~l~~H~~~V~~v~f------  198 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-----------------TFGEHTKFVHSVRY------  198 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-----------------EECCCSSCEEEEEE------
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-----------------eeccccCceEEEEE------
Confidence            6789999999999999987 59999999999999987543211                 23456778999987      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEecc--CccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                       +|++++|++++.|++|++||+.+++....+...  ...++...|.+++|+|++++|+++ .|+.|++||++++ +....
T Consensus       199 -spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~  276 (611)
T 1nr0_A          199 -NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKT  276 (611)
T ss_dssp             -CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             -CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeee
Confidence             778999999999999999999999888777420  001222389999999999999965 9999999999873 21111


Q ss_pred             ee------------------------------------ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          211 YS------------------------------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       211 ~~------------------------------------~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      +.                                    .......+|...|.+++|+| ++.+|++++.|+.|++||+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Confidence            10                                    00112358999999999999 999999999999999999999


Q ss_pred             CeEEEEE-eecCCCEEEEEEccCCC
Q 023672          255 MELLYVL-HGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       255 ~~~~~~~-~~~~~~v~~~~~spdg~  278 (279)
                      +++...+ .+|...|.+++|+++++
T Consensus       356 ~~~~~~~~~~h~~~v~~~~~s~~~~  380 (611)
T 1nr0_A          356 GISNRVFPDVHATMITGIKTTSKGD  380 (611)
T ss_dssp             CCEEECSSCSCSSCEEEEEECTTSC
T ss_pred             CceeeecccCCcceEEEEEECCCCc
Confidence            9887665 56889999999998874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.9e-30  Score=208.15  Aligned_cols=219  Identities=15%  Similarity=0.283  Sum_probs=158.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc------------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS------------  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~------------  102 (279)
                      .+++||..+++.....    .+.+|.+.|++|+|+|+|++|++|+.||+|+|||+.+++.........            
T Consensus       126 tV~lWd~~tg~~~~~~----~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~  201 (420)
T 4gga_A          126 SVYLWSASSGDILQLL----QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  201 (420)
T ss_dssp             EEEEEETTTCCEEEEE----ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE
T ss_pred             EEEEEECCCCCEEEEE----EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCE
Confidence            4678888888765421    356788999999999999999999999999999999876532211100            


Q ss_pred             c-cCCCCc-----------ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee----eEEEec
Q 023672          103 L-AKDQDS-----------YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL----RCTYRA  166 (279)
Q Consensus       103 ~-~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~----~~~~~~  166 (279)
                      + ....+.           ........|...+..+.       ++|++.++++++.|+.|++|+..+++.    +.....
T Consensus       202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~-------~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~  274 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  274 (420)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred             EEEEeCCCceeEeeecccceeeEEecccccceeeee-------ecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence            0 000000           00011122333444444       478899999999999999999987653    334444


Q ss_pred             cCccccccceeeEEECCCCC-EEEE--e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          167 YDAVDEITAAFSVAFNPTGT-KIFA--G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~-~l~~--~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      +..     .|.+++|+|.+. ++++  | .|+.|++||+.++    .....+     .+...+.++.|+| ++..+++++
T Consensus       275 ~~~-----~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~----~~~~~~-----~~~~~v~~~~~~~-~~~~lv~~s  339 (420)
T 4gga_A          275 HQG-----AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----ACLSAV-----DAHSQVCSILWSP-HYKELISGH  339 (420)
T ss_dssp             CSS-----CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT----EEEEEE-----ECSSCEEEEEEET-TTTEEEEEE
T ss_pred             cCC-----ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc----ccceee-----ccccceeeeeecC-CCCeEEEEE
Confidence            444     899999999764 4442  4 7999999999984    333333     2345689999999 666666654


Q ss_pred             --CCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          243 --YSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       243 --~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                        .|+.|+|||+++++++..+.+|.+.|++++|+|||++
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~  378 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence              7999999999999999999999999999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=1.5e-30  Score=207.50  Aligned_cols=209  Identities=14%  Similarity=0.180  Sum_probs=165.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.++..    .....+.+|.+.|.+++|+|++++|++++.||.|++||+.++.....               ..
T Consensus        31 ~v~i~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------~~   91 (372)
T 1k8k_C           31 EVHIYEKSGNKW----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT---------------LV   91 (372)
T ss_dssp             EEEEEEEETTEE----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE---------------EE
T ss_pred             EEEEEeCCCCcE----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee---------------EE
Confidence            577888877651    12236678999999999999999999999999999999976532111               01


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee---eEEE-eccCccccccceeeEEECCCCCEEEE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTY-RAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      ...+...|.+++|       +|++++|++++.|+.|++||++.+..   ...+ ..+..     .|.+++|+|+++++++
T Consensus        92 ~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           92 ILRINRAARCVRW-------APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-----TVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             CCCCSSCEEEEEE-------CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-----CEEEEEECTTSSEEEE
T ss_pred             eecCCCceeEEEE-------CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-----CeeEEEEcCCCCEEEE
Confidence            2345678888887       67899999999999999999988763   2222 22333     8999999999999997


Q ss_pred             e-cCCeEEEEEccCCCC--------------ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          191 G-YNKSVRVFDVHRPGR--------------DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      + .|+.|++||++....              .......+    .+|...|.+++|+| ++.+|++++.|+.|++||++++
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES----SSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC----CCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGT
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEec----CCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCC
Confidence            6 899999999753110              01222233    57888999999999 8899999999999999999999


Q ss_pred             eEEEEEeecCCCEEEEEEccCCCC
Q 023672          256 ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +++..+..|..+|.+++|+|+|++
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~~  258 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESSL  258 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEE
T ss_pred             ceeEEEccCCCCeEEEEEecCCCE
Confidence            999999999999999999999863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.5e-31  Score=216.98  Aligned_cols=220  Identities=10%  Similarity=0.045  Sum_probs=161.1

Q ss_pred             cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC------CCeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD------GSSFLTSSEDKTLRIFSLPENGISYDVNACSL  103 (279)
Q Consensus        30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  103 (279)
                      ....-.+.+||+.++....  .....+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++....... .. 
T Consensus       179 ~s~D~tI~iWd~~~~~~~~--~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~-  254 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHC--VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KM-  254 (524)
T ss_dssp             ---CEEEEEEEEETTTCCE--EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-EC-
T ss_pred             CCCCceEEEEEccCCCCCc--eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-ee-
Confidence            3444567889887765421  111245668899999999996      5799999999999999998653211000 00 


Q ss_pred             cCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeE--E
Q 023672          104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSV--A  180 (279)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~--~  180 (279)
                         .... ......+...|.+++|+       ++ ..|++|+.||+|++||++++. +...+..|..     .|.++  .
T Consensus       255 ---~~~p-~~~l~~h~~~v~sv~~s-------~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~-----~V~sv~~~  317 (524)
T 2j04_B          255 ---CEKP-SLTLSLADSLITTFDFL-------SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-----YILSVSTA  317 (524)
T ss_dssp             ---CCSC-SEEECCTTTCEEEEEES-------SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSS-----CEEEEEEE
T ss_pred             ---ecCc-eEEEEcCCCCEEEEEec-------CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccc-----cEEEEEEE
Confidence               0000 01223466789999884       43 379999999999999999764 4455677765     89999  5


Q ss_pred             ECCCC-CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCC--CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          181 FNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       181 ~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      |+|++ .+|+++ .|++|+|||++++    +....+    .+|.  ..|.+++|+| ++..+++++.|++|++||++++.
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~----~~~~~~----~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDI----ATTKTT----VSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGH----HHHCEE----EEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTT
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCC----Cccccc----ccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccc
Confidence            78887 788865 9999999999873    111122    2332  2478999999 88899999999999999999999


Q ss_pred             EEEEEeecCCCEEEEEEccCCCC
Q 023672          257 LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       257 ~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ++..+.+|.+.|++++|||+|++
T Consensus       389 ~~~~l~gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          389 AVHPLVSRETTITAIGVSRLHPM  411 (524)
T ss_dssp             CCEEEEECSSCEEEEECCSSCCB
T ss_pred             cceeeecCCCceEEEEeCCCCCe
Confidence            88889999999999999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=5.1e-30  Score=220.43  Aligned_cols=207  Identities=20%  Similarity=0.288  Sum_probs=162.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|++.+..... ......+.+|.+.|.+++|+|++++|++|+.||+|+|||+.++....                 .
T Consensus       406 ~i~~W~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-----------------~  467 (694)
T 3dm0_A          406 SIILWKLTKDDKAY-GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-----------------R  467 (694)
T ss_dssp             EEEEEECCCSTTCS-CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----------------E
T ss_pred             cEEEEEccCCCccc-ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-----------------E
Confidence            56777776543221 11233678999999999999999999999999999999998754321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe-
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-  191 (279)
                      ...|...|.+++|       +|++.+|++|+.|++|++||+..........  ...++...|.+++|+|++  ..++++ 
T Consensus       468 ~~~h~~~v~~~~~-------s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          468 FVGHTKDVLSVAF-------SLDNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             EECCSSCEEEEEE-------CTTSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeCCCCCEEEEEE-------eCCCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence            3457778999987       7789999999999999999987554332221  112233379999999987  466755 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  271 (279)
                      .|+.|++||+++.    +....+    .+|...|.+++|+| ++.+|++|+.||.|++||+++++++..+.. ...|.++
T Consensus       539 ~d~~v~vwd~~~~----~~~~~~----~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~  608 (694)
T 3dm0_A          539 WDKTVKVWNLSNC----KLRSTL----AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHAL  608 (694)
T ss_dssp             TTSCEEEEETTTC----CEEEEE----CCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEE
T ss_pred             CCCeEEEEECCCC----cEEEEE----cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEE
Confidence            9999999999873    222333    68999999999999 899999999999999999999999888764 5689999


Q ss_pred             EEccCCC
Q 023672          272 SKLSSAY  278 (279)
Q Consensus       272 ~~spdg~  278 (279)
                      +|+|+++
T Consensus       609 ~~sp~~~  615 (694)
T 3dm0_A          609 CFSPNRY  615 (694)
T ss_dssp             EECSSSS
T ss_pred             EEcCCCc
Confidence            9999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.1e-30  Score=205.38  Aligned_cols=209  Identities=18%  Similarity=0.222  Sum_probs=161.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC--CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||+.....    .....+.+|.+.|++++|+++  +++|++|+.||.|++||+.++....               .
T Consensus        34 ~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------------~   94 (379)
T 3jrp_A           34 TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ---------------I   94 (379)
T ss_dssp             CEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE---------------E
T ss_pred             cEEEEecCCCcc----eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE---------------e
Confidence            467777753221    223367889999999999987  8999999999999999998753110               0


Q ss_pred             eeeecCCCceEEEEeeCcccccCCC--CcEEEEecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECC-----
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPT--SCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNP-----  183 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-----  183 (279)
                      .....+...|.+++|       +|+  +.+|++++.|+.|++||++++..  ...+..+..     .|.+++|+|     
T Consensus        95 ~~~~~~~~~v~~~~~-------~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           95 AVHAVHSASVNSVQW-------APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEE  162 (379)
T ss_dssp             EEECCCSSCEEEEEE-------CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-----CEEEEEECCCC---
T ss_pred             eeecCCCcceEEEEe-------CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-----ceEEEEEcCccccc
Confidence            123346678999988       556  88999999999999999998743  333444444     899999999     


Q ss_pred             --------CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC---CcEEEEEeCCCcEEEEe
Q 023672          184 --------TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       184 --------~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~~l~~~~~dg~i~~wd  251 (279)
                              ++.+++++ .|+.|++||++.+.........+    .+|...|.+++|+| +   +.+|++++.||.|++||
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL----EGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE----CCCSSCEEEEEECC-CCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE----ecccCcEeEEEECC-CCCCCCeEEEEeCCCEEEEEe
Confidence                    68888866 99999999999754443444444    68899999999999 7   89999999999999999


Q ss_pred             cCCCe---EEEEE--eecCCCEEEEEEccCCCC
Q 023672          252 EDNME---LLYVL--HGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       252 ~~~~~---~~~~~--~~~~~~v~~~~~spdg~~  279 (279)
                      ++++.   ....+  ..|...|++++|+|||++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  270 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  270 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCE
Confidence            99874   22222  237889999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.2e-29  Score=204.64  Aligned_cols=213  Identities=18%  Similarity=0.266  Sum_probs=163.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+|++......  ......+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++.........          ..
T Consensus        58 ~i~v~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~----------~~  125 (402)
T 2aq5_A           58 AFLVLPLGKTGRV--DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP----------VI  125 (402)
T ss_dssp             CEEEEETTCCEEC--CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC----------SE
T ss_pred             EEEEEECccCCCC--CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCc----------eE
Confidence            4667776543211  012235778999999999999 9999999999999999999876432211111          11


Q ss_pred             eeecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEE--eccCccccccceeeEEECCCCCEEEE
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      ....|...|.+++|       +|++ .+|++++.|+.|++||+++++.+..+  ..+..     .|.+++|+|++++|++
T Consensus       126 ~~~~h~~~v~~~~~-------~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          126 TLEGHTKRVGIVAW-------HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALICT  193 (402)
T ss_dssp             EEECCSSCEEEEEE-------CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCEEE
T ss_pred             EecCCCCeEEEEEE-------CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEEEE
Confidence            33457789999988       5666 69999999999999999999998888  55554     8999999999999996


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCc-eEEEEEccCCCcEEEEE---eCCCcEEEEecCCCeE-EEEEe-e
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI-MSAIAFSPTHTGMLAIG---SYSQTSAIYREDNMEL-LYVLH-G  263 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~~l~~~---~~dg~i~~wd~~~~~~-~~~~~-~  263 (279)
                      + .|+.|++||++++    .....+.   .+|.+. +.+++|+| ++.+|++|   +.|+.|++||+++++. +.... .
T Consensus       194 ~~~d~~i~iwd~~~~----~~~~~~~---~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKG----TVVAEKD---RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             EETTSEEEEEETTTT----EEEEEEE---CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             EecCCcEEEEeCCCC----ceeeeec---cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence            6 9999999999974    2222221   355554 89999999 89999999   7899999999998764 33333 4


Q ss_pred             cCCCEEEEEEccCCCC
Q 023672          264 QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       264 ~~~~v~~~~~spdg~~  279 (279)
                      |...|.+++|+|||++
T Consensus       266 ~~~~v~~~~~s~~~~~  281 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNI  281 (402)
T ss_dssp             CCSSCEEEEEETTTTE
T ss_pred             CCCceeEEEEcCCCCE
Confidence            6778999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=200.30  Aligned_cols=217  Identities=9%  Similarity=0.053  Sum_probs=168.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc------ccccCCC-
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA------CSLAKDQ-  107 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~-  107 (279)
                      .+.+||+.+++...      .+.+|.+.|.+++|+|++++|++++.||.|++||+.++........      ....+.. 
T Consensus        55 ~i~vwd~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  128 (369)
T 3zwl_B           55 SASVWYSLNGERLG------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN  128 (369)
T ss_dssp             CEEEEETTTCCEEE------EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred             EEEEEeCCCchhhh------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCC
Confidence            57889988877655      6778999999999999999999999999999999988765322210      0000000 


Q ss_pred             -------C-----cccceeeecC---------------------CC--ceEEEEeeCcccccCCCCcEEEEecCCCcEEE
Q 023672          108 -------D-----SYEASLVVTE---------------------GE--SVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (279)
Q Consensus       108 -------~-----~~~~~~~~~~---------------------~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (279)
                             +     ..+.......                     ..  .+.++       +++|++++|++++.|+.|++
T Consensus       129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA-------GWSTKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE-------EECGGGCEEEEEETTSEEEE
T ss_pred             EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE-------EEcCCCCEEEEEcCCCEEEE
Confidence                   0     0000000000                     00  33444       45788999999999999999


Q ss_pred             EECCC-CeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672          153 WDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       153 ~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                      ||+++ ++....+..+..     .|.+++|+|++.+|+++ .|+.|++||+++. .   ....+     .+...+.+++|
T Consensus       202 ~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~---~~~~~-----~~~~~~~~~~~  267 (369)
T 3zwl_B          202 YDVSNNYEYVDSIDLHEK-----SISDMQFSPDLTYFITSSRDTNSFLVDVSTL-Q---VLKKY-----ETDCPLNTAVI  267 (369)
T ss_dssp             EETTTTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTC-C---EEEEE-----ECSSCEEEEEE
T ss_pred             EECCCCcEeEEEEecCCC-----ceeEEEECCCCCEEEEecCCceEEEEECCCC-c---eeeee-----cCCCCceeEEe
Confidence            99998 788888887765     89999999999999966 9999999999974 2   22222     25678999999


Q ss_pred             ccCCCcEEEEEeCCC--------------cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          231 SPTHTGMLAIGSYSQ--------------TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       231 sp~~~~~l~~~~~dg--------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +| ++.++++++.++              .+++||+.+++++..+.+|...|++++|+|||++
T Consensus       268 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  329 (369)
T 3zwl_B          268 TP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS  329 (369)
T ss_dssp             CS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             cC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence            99 899999999888              8999999999999999999999999999999873

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.5e-29  Score=198.10  Aligned_cols=195  Identities=19%  Similarity=0.297  Sum_probs=160.1

Q ss_pred             eccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .++.||++.|++|+|+|+ +++|+||+.|++|+|||+.+.......            .......|...|.+++|     
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------~~~~l~~h~~~V~~~~~-----   94 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------PQRALRGHSHFVSDVVI-----   94 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE------------EEEEECCCSSCEEEEEE-----
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce------------eeEEEeCCCCCEEEEEE-----
Confidence            378999999999999997 689999999999999999865321110            01123456778999987     


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                        +|++++|++++.|+.|++|+............+..     .+..+.+++++.+++++ .|+.+++||+....   .. 
T Consensus        95 --s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---~~-  163 (340)
T 4aow_A           95 --SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---KY-  163 (340)
T ss_dssp             --CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EE-
T ss_pred             --CCCCCEEEEEcccccceEEeecccceeeeecCCCC-----ceeEEEEeecCccceeecCCCeEEEEEeCCCc---eE-
Confidence              77899999999999999999999888777776665     77889999999999866 99999999997631   11 


Q ss_pred             eecccccCCCCCceEEEEEccCC-CcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                         .....+|...+..++|+++. ..++++++.|+.|++||+++++++..+.+|.++|++++|+|||++
T Consensus       164 ---~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~  229 (340)
T 4aow_A          164 ---TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL  229 (340)
T ss_dssp             ---EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ---EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE
Confidence               11226888999999999832 357889999999999999999999999999999999999999863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8.4e-30  Score=207.34  Aligned_cols=216  Identities=18%  Similarity=0.294  Sum_probs=163.8

Q ss_pred             eeeEecCCCCcccc----eeeeeeccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           35 PLIRFDVPPHRTYH----FYNQFRTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .+.+|++.+.....    .......+.+|.+.|.+++|+|++. +|++|+.||.|++|++.++.........        
T Consensus       152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------  223 (430)
T 2xyi_A          152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA--------  223 (430)
T ss_dssp             CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEEC--------
T ss_pred             cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecc--------
Confidence            46677776421000    0122235678999999999999988 9999999999999999864321110000        


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC---eeeEEEeccCccccccceeeEEECCCCC
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                        ......|...|.+++|+|.      ++.+|++++.|+.|++||++++   +....+..+..     .|.+++|+|++.
T Consensus       224 --~~~~~~h~~~v~~v~~~p~------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~  290 (430)
T 2xyi_A          224 --KNIFTGHTAVVEDVAWHLL------HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA-----EVNCLSFNPYSE  290 (430)
T ss_dssp             --SEEECCCSSCEEEEEECSS------CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS-----CEEEEEECSSCT
T ss_pred             --ceeecCCCCCEeeeEEeCC------CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC-----CeEEEEeCCCCC
Confidence              1123356778999988542      5779999999999999999987   46666666665     899999999987


Q ss_pred             -EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC----------
Q 023672          187 -KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----------  254 (279)
Q Consensus       187 -~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~----------  254 (279)
                       ++++| .|+.|++||++....+.   ..+    .+|...|.+++|+|++..+|++++.|+.|++||+..          
T Consensus       291 ~~l~tg~~dg~v~vwd~~~~~~~~---~~~----~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  363 (430)
T 2xyi_A          291 FILATGSADKTVALWDLRNLKLKL---HSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  363 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCTTSCS---EEE----ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred             CEEEEEeCCCeEEEEeCCCCCCCe---EEe----ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence             46665 99999999999743322   222    578889999999994446899999999999999987          


Q ss_pred             ----CeEEEEEeecCCCEEEEEEccCCC
Q 023672          255 ----MELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       255 ----~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                          .+++..+.+|...|++++|+|+|+
T Consensus       364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          364 EDGPPELLFIHGGHTAKISDFSWNPNEP  391 (430)
T ss_dssp             HHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred             ccCCcceEEEcCCCCCCceEEEECCCCC
Confidence                367778888999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4e-30  Score=208.13  Aligned_cols=219  Identities=13%  Similarity=0.183  Sum_probs=168.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.....-  ......+.+|.+.|.+++|+|+ +++|++++.||.|++||+.++.........        ....
T Consensus        90 ~v~vw~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~~~  159 (416)
T 2pm9_A           90 SLELYSTNEANNA--INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP--------LTPG  159 (416)
T ss_dssp             CEEEECCSSTTSC--CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC--------BCCC
T ss_pred             eEEEeeccccccc--ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc--------cccc
Confidence            5678887762110  0123367889999999999998 899999999999999999876411000000        0001


Q ss_pred             eeecCCCceEEEEeeCcccccCCC-CcEEEEecCCCcEEEEECCCCeeeEEEeccCcc-ccccceeeEEECCCC-CEEEE
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTG-TKIFA  190 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~  190 (279)
                      ....+...|.+++|       +|+ +.+|++++.|+.|++||+++++.+..+..+... ++...|.+++|+|++ .++++
T Consensus       160 ~~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          160 QSMSSVDEVISLAW-------NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CSCCSSCCCCEEEE-------CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             cccCCCCCeeEEEe-------CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            12346668888887       556 789999999999999999999988888765210 112389999999997 56776


Q ss_pred             e-cCC---eEEEEEccCCCCceeeeeecccccC-CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          191 G-YNK---SVRVFDVHRPGRDFEKYSTLKGNKE-GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       191 ~-~d~---~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      + .|+   .|++||++++.....   .+    . +|...|.+++|+|+++.+|++++.||.|++||+++++++..+..|.
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~~~---~~----~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTPLQ---TL----NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG  305 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSCSB---CC----CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred             EECCCCCceEEEEeCCCCCCCcE---Ee----ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence            5 777   999999997432222   22    4 7889999999999778899999999999999999999999999999


Q ss_pred             CCEEEEEEccCC
Q 023672          266 GGVTHVSKLSSA  277 (279)
Q Consensus       266 ~~v~~~~~spdg  277 (279)
                      ..|.+++|+|+|
T Consensus       306 ~~v~~~~~s~~~  317 (416)
T 2pm9_A          306 NWCFKTKFAPEA  317 (416)
T ss_dssp             SCCCCEEECTTC
T ss_pred             CceEEEEECCCC
Confidence            999999999998

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=4.8e-30  Score=208.06  Aligned_cols=205  Identities=15%  Similarity=0.177  Sum_probs=161.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.++....      .+.+|.+.|++++|+|++++|++|+.|+.|++||+.++....                 .
T Consensus       120 ~i~iwd~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-----------------~  176 (420)
T 3vl1_A          120 DIKVLDSNFNLQRE------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-----------------T  176 (420)
T ss_dssp             CEEEECTTSCEEEE------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-----------------E
T ss_pred             CEEEEeCCCcceee------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-----------------E
Confidence            56788877665543      567999999999999999999999999999999998654321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc-------------------cccc
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-------------------EITA  175 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------------------~~~~  175 (279)
                      ...|...|.+++|       +|++.+|++++.|+.|++||+++++.+..+..+....                   +...
T Consensus       177 ~~~h~~~v~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          177 LIGHRATVTDIAI-------IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             EECCSSCEEEEEE-------ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             EcCCCCcEEEEEE-------cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            3457778999988       5688899999999999999999999888887543110                   1125


Q ss_pred             eeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecC
Q 023672          176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYRED  253 (279)
Q Consensus       176 v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~  253 (279)
                      +.+++|+|++++++++ .|+.|++||++++.    ....+   ...|...|.+++|+| ++. +|++|+.||.|++||++
T Consensus       250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~---~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKE----QTIQL---PSKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             CCTTCSSCTTEEEEEEETTSCEEEEETTTCC----EEEEE---CCTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETT
T ss_pred             ccceEEcCCCCEEEEEcCCCeEEEEECCCCc----eeEEc---ccccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcC
Confidence            6667788999999976 99999999998742    11122   146788999999999 666 99999999999999999


Q ss_pred             CCe-EEEEEee-cCCCEEEEEEccCCC
Q 023672          254 NME-LLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       254 ~~~-~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                      +++ ++..+.. |...|.++.|+ +|+
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~-~~~  347 (420)
T 3vl1_A          322 SPECPVGEFLINEGTPINNVYFA-AGA  347 (420)
T ss_dssp             CTTSCSEEEEESTTSCEEEEEEE-TTE
T ss_pred             CCcCchhhhhccCCCCceEEEeC-CCC
Confidence            875 4777777 66788888554 553

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=2.4e-29  Score=211.85  Aligned_cols=196  Identities=23%  Similarity=0.399  Sum_probs=162.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||......       ..+.+|...|.+++|+|++++|++++.||.|++||.... ..                 ..
T Consensus       326 ~i~~w~~~~~~~-------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~-----------------~~  380 (577)
T 2ymu_A          326 TVKLWNRNGQHL-------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL-----------------QT  380 (577)
T ss_dssp             CEEEEETTSCEE-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EE-----------------EE
T ss_pred             eEEEEeCCCCee-------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EE-----------------EE
Confidence            356677654432       256789999999999999999999999999999996532 10                 12


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...|.+++|       +|++++|++++.|+.|++||. +++.+..+..+..     .|++++|+|++++++++ .|
T Consensus       381 ~~~~~~~v~~~~~-------s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          381 LTGHSSSVRGVAF-------SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-----SVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EECCSSCEEEEEE-------CTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             ecCCCCCeEEEEE-------CCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC-----CeEEEEECCCCCEEEEEcCC
Confidence            2346678888876       788999999999999999995 5677777777765     89999999999999965 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.|++||...     +....+    .+|...|.+++|+| ++.+|++++.|+.|++|| .+++++..+.+|...|++++|
T Consensus       448 ~~v~~w~~~~-----~~~~~~----~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~  516 (577)
T 2ymu_A          448 KTVKLWNRNG-----QLLQTL----TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF  516 (577)
T ss_dssp             SEEEEEETTS-----CEEEEE----ECCSSCEEEEEECT-TSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEECCC-----CEEEEE----cCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEE
Confidence            9999999753     233333    58889999999999 999999999999999999 478899999999999999999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      +|||++
T Consensus       517 s~dg~~  522 (577)
T 2ymu_A          517 SPDGQT  522 (577)
T ss_dssp             CTTSSC
T ss_pred             cCCCCE
Confidence            999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-29  Score=199.39  Aligned_cols=197  Identities=15%  Similarity=0.194  Sum_probs=161.1

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+.++....                 ....+...|.+++|    
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------------~~~~h~~~v~~~~~----   82 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-----------------TLDGHTGTIWSIDV----   82 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE----
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-----------------hhhhcCCcEEEEEE----
Confidence            334688999999999999999999999999999999998764321                 22346678999987    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-----CeEEEEEccCCC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPG  205 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~~~d~~~~~  205 (279)
                         +|++++|++++.|+.|++||+.+++.+..+. +..     .+.+++|+|++++++++ .+     +.|++||+....
T Consensus        83 ---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           83 ---DCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             ---CTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS-----CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             ---cCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC-----CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence               7789999999999999999999999888887 333     89999999999999966 77     999999998743


Q ss_pred             Cceeeeee---cccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          206 RDFEKYST---LKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       206 ~~~~~~~~---~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ........   .......|..  .+.+++|+| ++.+|++++.||.|++||+++ ++.+..+..|...|.+++|+|+|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  232 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY  232 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence            21111100   0111134444  899999999 899999999999999999998 7888999999999999999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.2e-30  Score=209.76  Aligned_cols=220  Identities=11%  Similarity=0.035  Sum_probs=149.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--------CCCeEEEeeCCCeEEEEeCCCCccccccccccccCC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--------DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD  106 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  106 (279)
                      .+++||..++.... ......+.||.+.|++++|+|        |+++||+|+.|++|+|||+.++...           
T Consensus       112 ~v~lw~~~~~~~~~-~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~-----------  179 (393)
T 4gq1_A          112 TVRLIITKNETIIT-QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI-----------  179 (393)
T ss_dssp             CEEEEEEETTEEEE-EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE-----------
T ss_pred             cEEEEECCCCccce-eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee-----------
Confidence            56788877765432 223447899999999999998        8899999999999999999754321           


Q ss_pred             CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC------------------
Q 023672          107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD------------------  168 (279)
Q Consensus       107 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~------------------  168 (279)
                            .....+..++.+++|+|.      +..+|++++.|++|++||+++++.........                  
T Consensus       180 ------~~~~~~~~~v~~v~~~p~------~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          180 ------LAGYPLSSPGISVQFRPS------NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             ------EEEEECSSCEEEEEEETT------EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             ------eeecCCCCCcEEEEECCC------CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence                  133456678999988553      23589999999999999999876543332111                  


Q ss_pred             --ccccccceeeEEEC-CCCCEEEEe-cCCeEEEEEccCCCCceeeeeec---------c---cccCCCCCceEEEEEcc
Q 023672          169 --AVDEITAAFSVAFN-PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL---------K---GNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       169 --~~~~~~~v~~~~~~-~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~---------~---~~~~~~~~~v~~~~~sp  232 (279)
                        ..++...+.++.|+ |+++.++++ .|+.+++||+..+. ....+...         .   .....+...+..+.+.+
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-CCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence              01233367788886 789999866 99999999998632 11111000         0   00011122233333333


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       233 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .++.++++|+.||.|++||+.+++++..+..|..+|++++|||||++
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~  373 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH  373 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence            34557788899999999999999998888889999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.2e-29  Score=199.71  Aligned_cols=211  Identities=11%  Similarity=0.170  Sum_probs=162.9

Q ss_pred             eeeEecCCCCc-ccceeeeeeccCCCCCceEEEE------EccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672           35 PLIRFDVPPHR-TYHFYNQFRTSSIPNNFLKGIK------WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        35 ~~~~~d~~~~~-~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      .+.+||+.++. ...      .+.+|.+.|.+++      |+|++++|++++.||.|++||+.++....           
T Consensus        91 ~i~iwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~-----------  153 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVY------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV-----------  153 (357)
T ss_dssp             CEEEECTTSCSSCSE------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS-----------
T ss_pred             eEEEEeCCCCCccEE------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc-----------
Confidence            57889988776 433      5778999999995      46899999999999999999998754110           


Q ss_pred             Ccccceeee---cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-
Q 023672          108 DSYEASLVV---TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-  183 (279)
Q Consensus       108 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  183 (279)
                          ..+..   .....+.++.|.+   +++|++.++++++.|+.|++||+++++...... +..     .|.+++|+| 
T Consensus       154 ----~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-----~v~~~~~~~~  220 (357)
T 3i2n_A          154 ----ANMEPVQGENKRDCWTVAFGN---AYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IKN-----GVCSLEFDRK  220 (357)
T ss_dssp             ----EEECCCTTSCCCCEEEEEEEC---CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CSS-----CEEEEEESCS
T ss_pred             ----eeccccCCCCCCceEEEEEEe---ccCCCCCEEEEEccCCeEEEEECccCceeeecC-CCC-----ceEEEEcCCC
Confidence                01111   1234788888654   468899999999999999999999988755433 333     899999999 


Q ss_pred             --CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCC----
Q 023672          184 --TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNM----  255 (279)
Q Consensus       184 --~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~----  255 (279)
                        ++.+++++ .|+.|++||+++. .........  ...+|...|.+++|+| ++. +|++|+.||.|++||++++    
T Consensus       221 ~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~  296 (357)
T 3i2n_A          221 DISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASV--SEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRS  296 (357)
T ss_dssp             SSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEE--EEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred             CCCCCEEEEECCCCeEEEEeCcCC-Ccccceeee--ccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccc
Confidence              88998866 9999999999873 211111100  1147889999999999 776 8999999999999999854    


Q ss_pred             ---------------eEEEEEeecCCCEEEEEEccCCCC
Q 023672          256 ---------------ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       256 ---------------~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                                     +++..+.+|..+|++++|+|+|++
T Consensus       297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          297 KKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             -CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             cccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence                           467788999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=1.1e-28  Score=193.98  Aligned_cols=206  Identities=19%  Similarity=0.293  Sum_probs=166.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.+.......... ...+|...|.+++|+|++++|++++.||.|++||+.++....               ...
T Consensus        73 ~i~iw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---------------~~~  136 (337)
T 1gxr_A           73 CVKVWDISHPGNKSPVSQL-DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI---------------KAE  136 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEE-ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE---------------EEE
T ss_pred             eEEEEECCCCCceeeeecc-cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce---------------eee
Confidence            5778888776544322211 233789999999999999999999999999999998653210               112


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...+.+++|       +|+++++++++.|+.|++||+++++....+..+..     .+.+++|+|++++++++ .|
T Consensus       137 ~~~~~~~i~~~~~-------~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          137 LTSSAPACYALAI-------SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             EECSSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCceEEEEE-------CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-----ceEEEEECCCCCEEEEEecC
Confidence            3345667888877       67899999999999999999999999888887765     89999999999999966 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.|++||++++    +....+     .+...+.+++|+| ++.+|++++.|+.|++||+++++.. .+..|...|.+++|
T Consensus       205 g~i~~~d~~~~----~~~~~~-----~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~  273 (337)
T 1gxr_A          205 NTVRSWDLREG----RQLQQH-----DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKF  273 (337)
T ss_dssp             SEEEEEETTTT----EEEEEE-----ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEE
T ss_pred             CcEEEEECCCC----ceEeee-----cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEE
Confidence            99999999874    222222     3567899999999 8999999999999999999988754 67789999999999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      +|+|++
T Consensus       274 ~~~~~~  279 (337)
T 1gxr_A          274 AYCGKW  279 (337)
T ss_dssp             CTTSSE
T ss_pred             CCCCCE
Confidence            999863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.7e-29  Score=201.16  Aligned_cols=200  Identities=15%  Similarity=0.244  Sum_probs=163.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.++.....     ....|.+.|.+++|+|++++|++|+.||.|++||+.++....                 .
T Consensus       114 ~v~lw~~~~~~~~~~-----~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~  171 (401)
T 4aez_A          114 NVYVWNADSGSVSAL-----AETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-----------------T  171 (401)
T ss_dssp             EEEEEETTTCCEEEE-----EECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------E
T ss_pred             eEEEeeCCCCcEeEe-----eecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-----------------E
Confidence            578888888776542     223388999999999999999999999999999998754321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC-CCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      ...+...|.++.|         ++.++++++.|+.|++||++ .+.....+..+..     .|.+++|+|++.+++++ .
T Consensus       172 ~~~~~~~v~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          172 MAGHQARVGCLSW---------NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             ECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEET
T ss_pred             ecCCCCceEEEEE---------CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeC
Confidence            2356678999988         34599999999999999999 4566777777765     89999999999999966 8


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe--CCCcEEEEecCCCeEEEEEeecCCCEEE
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTH  270 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~  270 (279)
                      |+.|++||+++.    .....+    ..|...|.+++|+|++..++++|+  .|+.|++||+++++++..+. +...|.+
T Consensus       238 d~~v~iwd~~~~----~~~~~~----~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~  308 (401)
T 4aez_A          238 DNVVQIWDARSS----IPKFTK----TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTS  308 (401)
T ss_dssp             TSCEEEEETTCS----SEEEEE----CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             CCeEEEccCCCC----CccEEe----cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence            999999999973    222233    578889999999995567777765  79999999999999998887 6678999


Q ss_pred             EEEccCCCC
Q 023672          271 VSKLSSAYT  279 (279)
Q Consensus       271 ~~~spdg~~  279 (279)
                      ++|+|+|++
T Consensus       309 ~~~s~~~~~  317 (401)
T 4aez_A          309 LIWSPHSKE  317 (401)
T ss_dssp             EEECSSSSE
T ss_pred             EEECCCCCe
Confidence            999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.4e-31  Score=211.25  Aligned_cols=188  Identities=15%  Similarity=0.170  Sum_probs=144.8

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .|.+.|++++|+|++++|++|+.|+.|+|||+.++....               ......|...|.+++|       +|+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~---------------~~~~~~h~~~v~~~~~-------s~~   66 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH---------------ARTFSDHDKIVTCVDW-------APK   66 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE---------------CCCBCCCSSCEEEEEE-------CTT
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE---------------EEEEecCCceEEEEEE-------eCC
Confidence            366789999999999999999999999999998652100               0022356778999987       678


Q ss_pred             CcEEEEecCCCcEEEEECCCCe---eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          138 SCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +++|++++.|+.|++||+.+++   ....+..+..     .|.+++|+|++++|+++ .|+.|++||++.+ ........
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~  140 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQE-NDWWVSKH  140 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCc-ccceeeeE
Confidence            8999999999999999999877   4555555554     89999999999999866 9999999999873 22112223


Q ss_pred             cccccCC-CCCceEEEEEccCCCcEEEEEeCCCcEEEEecC------------------CCeEEEEEeecCCCEEEEEEc
Q 023672          214 LKGNKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------NMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       214 ~~~~~~~-~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      +    .+ |...|.+++|+| ++.+|++++.|+.|++||++                  .++++..+ +|...|.+++|+
T Consensus       141 ~----~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s  214 (377)
T 3dwl_C          141 L----KRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS  214 (377)
T ss_dssp             E----CSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC
T ss_pred             e----ecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC
Confidence            3    34 899999999999 89999999999999999985                  35566667 899999999999


Q ss_pred             cCCCC
Q 023672          275 SSAYT  279 (279)
Q Consensus       275 pdg~~  279 (279)
                      |+|++
T Consensus       215 p~~~~  219 (377)
T 3dwl_C          215 PSGNA  219 (377)
T ss_dssp             TTSSC
T ss_pred             CCCCE
Confidence            99974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=7.9e-29  Score=194.87  Aligned_cols=200  Identities=13%  Similarity=0.144  Sum_probs=164.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.++...    ....+.+|...|.+++|+|++++|++++.||.|++||+.++....                 .
T Consensus       120 ~i~~~d~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~-----------------~  178 (337)
T 1gxr_A          120 TLSIWDLAAPTPR----IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR-----------------Q  178 (337)
T ss_dssp             EEEEEECCCC--E----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------------E
T ss_pred             cEEEEECCCCCcc----eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-----------------e
Confidence            5778888776521    122566799999999999999999999999999999998754321                 1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...+.+++|       +|++.+|++++.|+.|++||+++++.+..+....      .+.+++|+|++++++++ .+
T Consensus       179 ~~~~~~~i~~~~~-------~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          179 FQGHTDGASCIDI-------SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS------QIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             ECCCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECTTSSEEEEEETT
T ss_pred             eecccCceEEEEE-------CCCCCEEEEEecCCcEEEEECCCCceEeeecCCC------ceEEEEECCCCCEEEEEcCC
Confidence            2235668888877       6789999999999999999999998887775433      78999999999999976 89


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.|++||++++.    . ..+    ..|...|.+++|+| ++.+|++++.||.|++||+.+++.+... .|...|.+++|
T Consensus       246 ~~i~~~~~~~~~----~-~~~----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~  314 (337)
T 1gxr_A          246 SNVEVLHVNKPD----K-YQL----HLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDI  314 (337)
T ss_dssp             SCEEEEETTSSC----E-EEE----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEE
T ss_pred             CcEEEEECCCCC----e-EEE----cCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEE
Confidence            999999998731    1 122    57888999999999 8999999999999999999999888554 48889999999


Q ss_pred             ccCCCC
Q 023672          274 LSSAYT  279 (279)
Q Consensus       274 spdg~~  279 (279)
                      +|||++
T Consensus       315 s~~~~~  320 (337)
T 1gxr_A          315 SVDDKY  320 (337)
T ss_dssp             CTTSCE
T ss_pred             CCCCCE
Confidence            999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2e-29  Score=202.07  Aligned_cols=189  Identities=10%  Similarity=0.112  Sum_probs=153.2

Q ss_pred             ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCccc
Q 023672           55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMS  132 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  132 (279)
                      .+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++....                .+. ..+...|.+++|+|.  
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~~~~~h~~~v~~~~~~~~--  129 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS----------------FIQGMGPGDAITGMKFNQF--  129 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE----------------EECCCSTTCBEEEEEEETT--
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce----------------eeecCCcCCceeEEEeCCC--
Confidence            678999999999999999 899999999999999998654321                111 247789999988442  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                          ++.+|++++.|+.|++||+++ .....+..+..  +...|.+++|+|++++++++ .|+.|++||++.     ...
T Consensus       130 ----~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~  197 (383)
T 3ei3_B          130 ----NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEI  197 (383)
T ss_dssp             ----EEEEEEEEETTTEEEEEETTS-CEEEEEECCCC--SSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEE
T ss_pred             ----CCCEEEEEeCCCEEEEEECCC-CceEEEeccCC--CCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEE
Confidence                578999999999999999986 44445543331  12279999999999999976 999999999953     233


Q ss_pred             eecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCC----CeEEEEEeecCCCEEEEEEcc-CCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDN----MELLYVLHGQEGGVTHVSKLS-SAYT  279 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~sp-dg~~  279 (279)
                      ..+    .+|...|.+++|+| ++. +|++|+.|+.|++||+++    +.++..+ +|...|.+++|+| +|++
T Consensus       198 ~~~----~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~  265 (383)
T 3ei3_B          198 FKE----KLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK  265 (383)
T ss_dssp             EEE----ECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE
T ss_pred             EEe----ccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE
Confidence            333    57889999999999 676 999999999999999998    6677666 6999999999999 8863

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=215.24  Aligned_cols=185  Identities=11%  Similarity=0.060  Sum_probs=141.6

Q ss_pred             eeeEecCCCCccc-----ceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           35 PLIRFDVPPHRTY-----HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .+++||+......     ........+.+|.+.|++++|++++ .|++|+.||+|++||++++...              
T Consensus       236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~--------------  300 (524)
T 2j04_B          236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP--------------  300 (524)
T ss_dssp             CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC--------------
T ss_pred             eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc--------------
Confidence            5678888765432     1112223577899999999999864 8999999999999999854210              


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                        ......|...|.++++     ++++++ .+|++|+.|++|+|||+++++....+..+...   ..|.+++|+|++..+
T Consensus       301 --~~~~~~H~~~V~sv~~-----~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          301 --SFYDQVHDSYILSVST-----AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSY  370 (524)
T ss_dssp             --SEEEECSSSCEEEEEE-----ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEE
T ss_pred             --eEEeecccccEEEEEE-----EcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---CcccceEeCCCcCeE
Confidence              1123457788999853     346777 89999999999999999998877666554321   147889999999888


Q ss_pred             EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      +++ .|+.|++||++++ .   +...+    .+|.+.|++++|+| ++.+|++|+.||+|++||+.
T Consensus       371 ~s~~~d~tv~lwd~~~~-~---~~~~l----~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAA-F---AVHPL----VSRETTITAIGVSR-LHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EEECSSSEEEEEETTCT-T---CCEEE----EECSSCEEEEECCS-SCCBCEEEETTTEEECCBSC
T ss_pred             EEeCCCCcEEEEECccc-c---cceee----ecCCCceEEEEeCC-CCCeEEEEECCCEEEEEech
Confidence            866 8999999999974 2   22233    57899999999999 89999999999999999853

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=201.79  Aligned_cols=191  Identities=17%  Similarity=0.271  Sum_probs=154.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|++++|++|+.||.|+|||+......               .......|...|.+++|+|.    
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---------------~~~~~~~h~~~v~~~~~~~~----   66 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---------------LIDTLTGHEGPVWRVDWAHP----   66 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE---------------EEEEECCCSSCEEEEEECCG----
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce---------------eeeEecCCCCcEEEEEeCCC----
Confidence            67889999999999999999999999999999999742110               00123356778999988331    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                       .++.+|++++.|+.|++||+.+++  ....+..+..     .|.+++|+|+  +.+++++ .|+.|++||++..... .
T Consensus        67 -~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~  139 (379)
T 3jrp_A           67 -KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-S  139 (379)
T ss_dssp             -GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC-C
T ss_pred             -CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc-----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce-e
Confidence             238899999999999999999987  5556655554     8999999999  8888866 9999999999874221 1


Q ss_pred             eeeecccccCCCCCceEEEEEccC------------CCcEEEEEeCCCcEEEEecCCCe----EEEEEeecCCCEEEEEE
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~------------~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~  273 (279)
                      .. .+    .+|...|.+++|+|.            ++.+|++|+.||.|++||++++.    ++..+.+|...|.+++|
T Consensus       140 ~~-~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          140 PI-II----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             EE-EE----ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             eE-Ee----cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence            11 22    578889999999994            48899999999999999998764    55678889999999999


Q ss_pred             ccC
Q 023672          274 LSS  276 (279)
Q Consensus       274 spd  276 (279)
                      +|+
T Consensus       215 sp~  217 (379)
T 3jrp_A          215 SPT  217 (379)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            999

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.4e-29  Score=202.45  Aligned_cols=209  Identities=12%  Similarity=0.151  Sum_probs=162.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCC-----CCceEEEEEc----cCCCe-EEEeeCCCeEEEEeCCC------Ccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIP-----NNFLKGIKWS----PDGSS-FLTSSEDKTLRIFSLPE------NGISYDV   98 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~t~~~dg~i~iwd~~~------~~~~~~~   98 (279)
                      .+.+||+.+...... .....+.+|     .+.|.+++|+    |++++ |++++.||.|++||+.+      +....-.
T Consensus        92 ~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  170 (397)
T 1sq9_A           92 DLLFYRITREDETKK-VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  170 (397)
T ss_dssp             CEEEEEEEECTTTCC-EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CEEEEEccCCccccc-ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence            567777766654100 002256667     5899999999    99999 99999999999999986      3221100


Q ss_pred             ccccccCCCCcccceee------ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec---c--
Q 023672           99 NACSLAKDQDSYEASLV------VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA---Y--  167 (279)
Q Consensus        99 ~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~---~--  167 (279)
                                 ....+.      ..+...|.+++|       +|++ +|++++.|+.|++||+++++.+..+..   +  
T Consensus       171 -----------~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~  231 (397)
T 1sq9_A          171 -----------PTLELQGTVESPMTPSQFATSVDI-------SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN  231 (397)
T ss_dssp             -----------CEEEEEEEECCSSSSCCCCCEEEE-------CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             -----------CcceeeeeeccccCCCCCceEEEE-------CCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc
Confidence                       000111      235667888877       6788 999999999999999999999988887   5  


Q ss_pred             -CccccccceeeEEECCCCCEEEEe-cC---CeEEEEEccCCCCceeeeeecccccCC-------------CCCceEEEE
Q 023672          168 -DAVDEITAAFSVAFNPTGTKIFAG-YN---KSVRVFDVHRPGRDFEKYSTLKGNKEG-------------QAGIMSAIA  229 (279)
Q Consensus       168 -~~~~~~~~v~~~~~~~~~~~l~~~-~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~  229 (279)
                       ..     .|.+++|+|++++|+++ .|   +.|++||++++ .   ....+    .+             |...|.+++
T Consensus       232 ~~~-----~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~---~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          232 NSN-----SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-E---RIGSL----SVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             CCC-----CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-C---EEEEE----CBC--------CCBSBSSCEEEEE
T ss_pred             cCC-----ccceEEECCCCCEEEEEecCCCCceEEEEECCCC-c---cccee----ccCcccccccccccccCCcEEEEE
Confidence             44     89999999999999966 88   99999999874 2   22233    34             888999999


Q ss_pred             EccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe------ec---------------CCCEEEEEEccCC
Q 023672          230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------GQ---------------EGGVTHVSKLSSA  277 (279)
Q Consensus       230 ~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------~~---------------~~~v~~~~~spdg  277 (279)
                      |+| ++.+|++++.||.|++||+++++++..+.      .|               ..+|++++|+|+|
T Consensus       299 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          299 FND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             ECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             ECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            999 89999999999999999999999999999      88               8999999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.1e-28  Score=191.06  Aligned_cols=219  Identities=15%  Similarity=0.276  Sum_probs=158.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc-----------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL-----------  103 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-----------  103 (279)
                      .+++||+.+++....+    ...+|...|++++|+|++++|++|+.||+|++||+++++..........           
T Consensus        46 tV~iWd~~tg~~~~~~----~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~  121 (318)
T 4ggc_A           46 SVYLWSASSGDILQLL----QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  121 (318)
T ss_dssp             EEEEEETTTCCEEEEE----ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred             EEEEEECCCCCEEEEE----EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence            5889999998876532    3567889999999999999999999999999999998765322211000           


Q ss_pred             -c-CCCC-----------cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeee----EEEec
Q 023672          104 -A-KDQD-----------SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR----CTYRA  166 (279)
Q Consensus       104 -~-~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~----~~~~~  166 (279)
                       . ...+           .........+...+..+.       +++++.++++++.|+.|++||+++++..    .....
T Consensus       122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  194 (318)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred             EEEEecCCceEeeecCCCceeEEEEcCccCceEEEE-------EcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence             0 0000           000111122333444444       4788999999999999999999987532    22222


Q ss_pred             cCccccccceeeEEECCCCCEEE---Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-
Q 023672          167 YDAVDEITAAFSVAFNPTGTKIF---AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-  241 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~---~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-  241 (279)
                      +..     .|.++.++|++..++   ++ .++.|++||.+.. .   ....     ..+...+..+.|+| .+..++++ 
T Consensus       195 ~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~---~~~~-----~~~~~~v~~~~~~~-~~~~~~~~s  259 (318)
T 4ggc_A          195 HQG-----AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-A---CLSA-----VDAHSQVCSILWSP-HYKELISGH  259 (318)
T ss_dssp             CCS-----CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-C---EEEE-----EECSSCEEEEEEET-TTTEEEEEE
T ss_pred             cCC-----ceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-c---cccc-----ccceeeeeeeeecc-cccceEEEE
Confidence            332     788999999865443   44 7899999999873 1   1111     24566799999999 66666554 


Q ss_pred             -eCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          242 -SYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       242 -~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       +.|+.|++||+++++++.++.+|.+.|++++|+|||++
T Consensus       260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  298 (318)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence             47999999999999999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=9.3e-30  Score=207.93  Aligned_cols=203  Identities=16%  Similarity=0.239  Sum_probs=149.7

Q ss_pred             CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc-cceeeecCC------------CceE
Q 023672           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY-EASLVVTEG------------ESVY  123 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~v~  123 (279)
                      ..|.+.|++++|+|++++||+|+.||.|+|||+.++.......       ...+ .......|.            ..|.
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-------RGEYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-------CCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-------ccceeEecccccccccccccccccccCceE
Confidence            3467899999999999999999999999999998754210000       0000 011222344            6788


Q ss_pred             EEEeeCcccccCCCC--cEEEEecCCCcEEEEECCCCeeeE---------------------------------------
Q 023672          124 DFCWFPHMSASDPTS--CVFASTTRDHPIHLWDATTGLLRC---------------------------------------  162 (279)
Q Consensus       124 ~~~~~~~~~~~~~~~--~~l~s~~~d~~i~i~d~~~~~~~~---------------------------------------  162 (279)
                      +++|       +|++  ..|++++.|+.|++||+.++....                                       
T Consensus        98 ~l~~-------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (447)
T 3dw8_B           98 KIRW-------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR  170 (447)
T ss_dssp             EEEE-------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred             EEEE-------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence            8888       5565  789999999999999998654321                                       


Q ss_pred             EE-eccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC-cEEEE
Q 023672          163 TY-RAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT-GMLAI  240 (279)
Q Consensus       163 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~~l~~  240 (279)
                      .+ ..|     ...|.+++|+|++++|+++.|+.|++||+++.+..............+|...|.+++|+| ++ .+|++
T Consensus       171 ~~~~~h-----~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s  244 (447)
T 3dw8_B          171 IFANAH-----TYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVY  244 (447)
T ss_dssp             EECSCC-----SSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEE
T ss_pred             EeccCC-----CcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEE
Confidence            11 223     338999999999999997799999999998533222222111123468899999999999 66 99999


Q ss_pred             EeCCCcEEEEecCCCeE----EEEEeecCC------------CEEEEEEccCCCC
Q 023672          241 GSYSQTSAIYREDNMEL----LYVLHGQEG------------GVTHVSKLSSAYT  279 (279)
Q Consensus       241 ~~~dg~i~~wd~~~~~~----~~~~~~~~~------------~v~~~~~spdg~~  279 (279)
                      |+.||.|++||+++++.    +..+..|..            .|.+++|+|+|++
T Consensus       245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  299 (447)
T 3dw8_B          245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY  299 (447)
T ss_dssp             EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE
T ss_pred             EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE
Confidence            99999999999999887    788888876            8999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4e-29  Score=201.69  Aligned_cols=211  Identities=12%  Similarity=0.201  Sum_probs=163.6

Q ss_pred             eeeEecCCCCccccee-eeeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFY-NQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||+.++...... .....+.+|.+.|.+++|+|++ ++|++++.||.|++||+.++.....               
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------  169 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT---------------  169 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE---------------
T ss_pred             eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE---------------
Confidence            5788998877432211 2233677899999999999998 6999999999999999987643211               


Q ss_pred             eee-ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEE-eccCccccccceeeEEECCCCCEEEE
Q 023672          113 SLV-VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       113 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                       +. ..+...|.+++|       +|++.+|++++.|+.|++||+++++.+..+ ..+..    ..+.++.|+|++.++++
T Consensus       170 -~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~  237 (402)
T 2aq5_A          170 -LGPDVHPDTIYSVDW-------SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----TRPVHAVFVSEGKILTT  237 (402)
T ss_dssp             -ECTTTCCSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS----SSCCEEEECSTTEEEEE
T ss_pred             -EecCCCCCceEEEEE-------CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC----CcceEEEEcCCCcEEEE
Confidence             11 346678999988       678999999999999999999999988887 45543    13789999999999986


Q ss_pred             e----cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEE-EEeCCCcEEEEecCCCeE-EEEEeec
Q 023672          191 G----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA-IGSYSQTSAIYREDNMEL-LYVLHGQ  264 (279)
Q Consensus       191 ~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~-~~~~dg~i~~wd~~~~~~-~~~~~~~  264 (279)
                      |    .|+.|++||+++...+.... .     ..|...+.+++|+| ++.+|+ +|+.||.|++||+.++++ +..+..|
T Consensus       238 g~~~~~d~~i~iwd~~~~~~~~~~~-~-----~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          238 GFSRMSERQVALWDTKHLEEPLSLQ-E-----LDTSSGVLLPFFDP-DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             EECTTCCEEEEEEETTBCSSCSEEE-E-----CCCCSSCEEEEEET-TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             eccCCCCceEEEEcCccccCCceEE-e-----ccCCCceeEEEEcC-CCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence            5    78999999998743322221 1     24567799999999 777775 666899999999999874 5555554


Q ss_pred             --CCCEEEEEEccCCCC
Q 023672          265 --EGGVTHVSKLSSAYT  279 (279)
Q Consensus       265 --~~~v~~~~~spdg~~  279 (279)
                        ..+|.+++|+|+|++
T Consensus       311 ~~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGL  327 (402)
T ss_dssp             CCSSCCSEEEECCGGGS
T ss_pred             ccCCcccceEEeccccc
Confidence              589999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=4.3e-29  Score=200.14  Aligned_cols=206  Identities=12%  Similarity=0.101  Sum_probs=160.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+......    ....+|.+.|.+++|+| ++++|++++.|+.|++||+.+....                 .
T Consensus        97 ~i~iwd~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------------~  155 (383)
T 3ei3_B           97 DIILWDYDVQNKTSF----IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ-----------------V  155 (383)
T ss_dssp             CEEEEETTSTTCEEE----ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE-----------------E
T ss_pred             eEEEEeCCCccccee----eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE-----------------E
Confidence            567888876665431    13357999999999999 7899999999999999999853211                 0


Q ss_pred             ee--ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-EEEE
Q 023672          114 LV--VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA  190 (279)
Q Consensus       114 ~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  190 (279)
                      +.  ..+...|.+++|       +|++.+|++++.|+.|++||+ +++.+..+..+..     .|.+++|+|++. ++++
T Consensus       156 ~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          156 FAKTDSWDYWYCCVDV-------SVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-----KVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EECCCCSSCCEEEEEE-------ETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-----CEEEEEECSSCTTEEEE
T ss_pred             EeccCCCCCCeEEEEE-------CCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-----cEEEEEECCCCCCEEEE
Confidence            11  123357888887       668899999999999999999 5777788877765     899999999998 7776


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC----
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE----  265 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----  265 (279)
                      + .|+.|++||+++..........+     +|...|.+++|+|.++.+|++++.|+.|++||+++++.+..+..|.    
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            5 99999999999743222333332     5788999999999667899999999999999999988777776553    


Q ss_pred             -------------CCEEEEEEccCCCC
Q 023672          266 -------------GGVTHVSKLSSAYT  279 (279)
Q Consensus       266 -------------~~v~~~~~spdg~~  279 (279)
                                   +.+..++|+|||++
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~  324 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL  324 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT
T ss_pred             ccccceEEeccCCCCceEEEecCCccc
Confidence                         35566888888864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=4.3e-28  Score=191.02  Aligned_cols=223  Identities=17%  Similarity=0.208  Sum_probs=163.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc-------------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------------  101 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------  101 (279)
                      .+++||+.+..... ......+.+|.+.|.+++|+|++++|++++.|+.|++|+.............             
T Consensus        62 ~i~vWd~~~~~~~~-~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (340)
T 4aow_A           62 TIIMWKLTRDETNY-GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN  140 (340)
T ss_dssp             CEEEEEECCSSSCS-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             eEEEEECCCCCccc-ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC
Confidence            57888887665432 1233467899999999999999999999999999999999876542111000             


Q ss_pred             --cccCCCCccc-----------ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672          102 --SLAKDQDSYE-----------ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD  168 (279)
Q Consensus       102 --~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~  168 (279)
                        ......++.+           ......+...+..+.|.+     .+...++++++.|+.|++||+++++.+..+..+.
T Consensus       141 ~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~  215 (340)
T 4aow_A          141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-----NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT  215 (340)
T ss_dssp             SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS-----CSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc-----CCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence              0000011110           011123345566666633     3445678999999999999999999999888877


Q ss_pred             ccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcE
Q 023672          169 AVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (279)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i  247 (279)
                      .     .|.+++|+|++++|+++ .|+.|++||+++.    .....+     .+...+.+++|+| ++.+ ++++.|+.|
T Consensus       216 ~-----~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~----~~~~~~-----~~~~~v~~~~~~~-~~~~-~~~~~d~~i  279 (340)
T 4aow_A          216 G-----YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYTL-----DGGDIINALCFSP-NRYW-LCAATGPSI  279 (340)
T ss_dssp             S-----CEEEEEECTTSSEEEEEETTCEEEEEETTTT----EEEEEE-----ECSSCEEEEEECS-SSSE-EEEEETTEE
T ss_pred             C-----cEEEEEECCCCCEEEEEeCCCeEEEEEeccC----ceeeee-----cCCceEEeeecCC-CCce-eeccCCCEE
Confidence            6     89999999999999966 9999999999974    333333     2345799999999 7654 556679999


Q ss_pred             EEEecCCCeEEEEEe---------ecCCCEEEEEEccCCCC
Q 023672          248 AIYREDNMELLYVLH---------GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       248 ~~wd~~~~~~~~~~~---------~~~~~v~~~~~spdg~~  279 (279)
                      ++||++++..+..+.         +|...|++++|+|||++
T Consensus       280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence            999999887766553         57889999999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=7e-30  Score=208.11  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=145.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+.....    ...+.+|.+.|++|+|+| ++++|++|+.||+|++||++++....                 
T Consensus       143 ~i~lWd~~~~~~~~----~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~-----------------  201 (435)
T 4e54_B          143 DIMLWNFGIKDKPT----FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV-----------------  201 (435)
T ss_dssp             CEEEECSSCCSCCE----EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE-----------------
T ss_pred             EEEEEECCCCCcee----EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE-----------------
Confidence            56778876655322    225678999999999998 78899999999999999997542210                 


Q ss_pred             eeecC--CCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-EEEE
Q 023672          114 LVVTE--GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA  190 (279)
Q Consensus       114 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  190 (279)
                      +...+  ...+.++.|       +|++.+|++|+.||.|++||++. +.+..+..|..     .|.+++|+|++. ++++
T Consensus       202 ~~~~~~~~~~~~~~~~-------~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~-----~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          202 FASSDTINIWFCSLDV-------SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKK-----KVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EECCSSCSCCCCCEEE-------ETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSS-----CEEEEEECTTCSSEEEE
T ss_pred             EeccCCCCccEEEEEE-------CCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccc-----eEEeeeecCCCceEEEE
Confidence            11111  123445544       77899999999999999999864 45556666655     899999999986 5555


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      + .|+.|++||+++.... ..+..    ..+|...|.+++|+| ++.+|++++.||.|+|||++++++...+..|.
T Consensus       269 ~s~d~~v~iwd~~~~~~~-~~~~~----~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGK-ASFLY----SLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             EETTSBCCEEETTTCCSS-SCCSB----CCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             ecCcceeeEEeccccccc-ceEEE----eeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            5 8999999999874221 11111    157899999999999 89999999999999999999998877776554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=1.2e-28  Score=199.75  Aligned_cols=202  Identities=10%  Similarity=0.103  Sum_probs=159.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||..+.....      .+..| ..+....|+|++++|++|+.||.|++||+.++....                 .
T Consensus        79 ~v~i~d~~~~~~~~------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~  134 (420)
T 3vl1_A           79 HDFLFNTIIRDGSK------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-----------------I  134 (420)
T ss_dssp             EEEEEECCSEETTT------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-----------------E
T ss_pred             cEEEEEecccceee------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-----------------e
Confidence            56778877766544      44455 445566789999999999999999999998653311                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...|...|.+++|       +|++.+|++++.|+.|++||+++++.+..+..|..     .|.+++|+|++++|+++ .|
T Consensus       135 ~~~h~~~v~~~~~-------~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          135 DQAHVSEITKLKF-------FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             TTSSSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETT
T ss_pred             cccccCccEEEEE-------CCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCC
Confidence            2356778999988       67899999999999999999999999888887776     89999999999999966 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCC---------------------CceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQA---------------------GIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---------------------~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      +.|++||++++ +   ....+... ..+.                     ..+.+++|+| ++.+|++|+.||.|++||+
T Consensus       203 ~~v~iwd~~~~-~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          203 GTIRLWECGTG-T---TIHTFNRK-ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             SCEEEEETTTT-E---EEEEECBT-TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEET
T ss_pred             CcEEEeECCCC-c---eeEEeecC-CCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEEC
Confidence            99999999974 2   22222111 2233                     3445555678 8899999999999999999


Q ss_pred             CCCeEEEEEee-cCCCEEEEEEccCCC
Q 023672          253 DNMELLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       253 ~~~~~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                      ++++.+..+.. |...|.+++|+|+|+
T Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~  303 (420)
T 3vl1_A          277 FSKEQTIQLPSKFTCSCNSLTVDGNNA  303 (420)
T ss_dssp             TTCCEEEEECCTTSSCEEEEEECSSCT
T ss_pred             CCCceeEEcccccCCCceeEEEeCCCC
Confidence            99988777754 788999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.3e-29  Score=200.67  Aligned_cols=216  Identities=10%  Similarity=0.153  Sum_probs=166.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccccc----------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA----------  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~----------  104 (279)
                      .+.+|| .++....      .+.+|...|.+++|+|++++|++++.||.|++||+.++............          
T Consensus       131 ~i~i~~-~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (425)
T 1r5m_A          131 ELRLWN-KTGALLN------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS  203 (425)
T ss_dssp             CEEEEE-TTSCEEE------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred             eEEEEe-CCCCeee------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence            466777 3333332      57789999999999999999999999999999999877543221111000          


Q ss_pred             -------------------CCCCc----------ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEEC
Q 023672          105 -------------------KDQDS----------YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDA  155 (279)
Q Consensus       105 -------------------~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~  155 (279)
                                         ...+.          ........+...|.+++|       +|++.+|++++.|+.|++||+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          204 GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF-------NDTNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             --CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE-------ETTTTEEEEEETTSCEEEECS
T ss_pred             CCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE-------CCCCCEEEEEcCCCEEEEEEC
Confidence                               00000          001112234456666666       678889999999999999999


Q ss_pred             CCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC
Q 023672          156 TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH  234 (279)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  234 (279)
                      ++++....+..+..     .|.+++|+|++ .++++ .|+.|++||++++    .....+    ..|...|.+++|+| +
T Consensus       277 ~~~~~~~~~~~~~~-----~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----~~~~~~----~~~~~~i~~~~~s~-~  341 (425)
T 1r5m_A          277 GNGNSQNCFYGHSQ-----SIVSASWVGDD-KVISCSMDGSVRLWSLKQN----TLLALS----IVDGVPIFAGRISQ-D  341 (425)
T ss_dssp             SSBSCSEEECCCSS-----CEEEEEEETTT-EEEEEETTSEEEEEETTTT----EEEEEE----ECTTCCEEEEEECT-T
T ss_pred             CCCccceEecCCCc-----cEEEEEECCCC-EEEEEeCCCcEEEEECCCC----cEeEec----ccCCccEEEEEEcC-C
Confidence            99998888877665     89999999999 66655 9999999999874    333333    56788999999999 8


Q ss_pred             CcEEEEEeCCCcEEEEecCCCe--------------------EEEEEeecCC--CEEEEEEccCCCC
Q 023672          235 TGMLAIGSYSQTSAIYREDNME--------------------LLYVLHGQEG--GVTHVSKLSSAYT  279 (279)
Q Consensus       235 ~~~l~~~~~dg~i~~wd~~~~~--------------------~~~~~~~~~~--~v~~~~~spdg~~  279 (279)
                      +.+|++++.||.|++||+++++                    ++..+..|..  .|++++|+|+|++
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  408 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK  408 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence            9999999999999999999888                    8899999976  9999999999973

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.2e-29  Score=201.83  Aligned_cols=215  Identities=15%  Similarity=0.158  Sum_probs=163.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+++...      .+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.......              
T Consensus        96 ~i~v~d~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------  155 (366)
T 3k26_A           96 IIRIINPITMQCIK------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG--------------  155 (366)
T ss_dssp             EEEEECTTTCCEEE------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC--------------
T ss_pred             EEEEEEchhceEee------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec--------------
Confidence            67889988877654      5678999999999999 89999999999999999998764321110              


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEecc-----------------------Ccc
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-----------------------DAV  170 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~-----------------------~~~  170 (279)
                      ....+...|.+++|       +|++.+|++++.|+.|++||+++++....+...                       ...
T Consensus       156 ~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          156 GVEGHRDEVLSADY-------DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             STTSCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             ccccccCceeEEEE-------CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            00246678999987       678999999999999999999987654333220                       000


Q ss_pred             ccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee------eecccccCCCCCceEEEEEccCC--CcEEEEE
Q 023672          171 DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY------STLKGNKEGQAGIMSAIAFSPTH--TGMLAIG  241 (279)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~sp~~--~~~l~~~  241 (279)
                      .+...|.+++|+  +++++++ .|+.|++||+++........      ......+..|...|.+++|+| +  +.+|++|
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~  305 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALG  305 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEE
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEE
Confidence            022389999998  6677765 99999999998743211100      011122267888999999999 7  9999999


Q ss_pred             eCCCcEEEEecCCCe----EEEEEeec--CCCEEEEEEccCCCC
Q 023672          242 SYSQTSAIYREDNME----LLYVLHGQ--EGGVTHVSKLSSAYT  279 (279)
Q Consensus       242 ~~dg~i~~wd~~~~~----~~~~~~~~--~~~v~~~~~spdg~~  279 (279)
                      +.||.|++||+.+++    ....+..|  ...|++++|+|+|++
T Consensus       306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  349 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSI  349 (366)
T ss_dssp             CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCe
Confidence            999999999999875    44578877  689999999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.1e-28  Score=196.35  Aligned_cols=217  Identities=18%  Similarity=0.280  Sum_probs=170.3

Q ss_pred             eeeEecCCCCcccceeeeee-------ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCC
Q 023672           35 PLIRFDVPPHRTYHFYNQFR-------TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD  106 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  106 (279)
                      .+.+||+.+...........       ...+|.+.|.+++|+| ++++|++++.||.|++||+.++...           
T Consensus        67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----------  135 (408)
T 4a11_B           67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA-----------  135 (408)
T ss_dssp             CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE-----------
T ss_pred             eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc-----------
Confidence            57788888776654332111       2246999999999999 7789999999999999999875432           


Q ss_pred             CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672          107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       107 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                             ........+..+.|.|.    ++++.++++++.|+.|++||+++++.+..+..+..     .|.+++|+|++.
T Consensus       136 -------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~  199 (408)
T 4a11_B          136 -------DVFNFEETVYSHHMSPV----STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYD  199 (408)
T ss_dssp             -------EEEECSSCEEEEEECSS----CSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-----CEEEEEECSSCT
T ss_pred             -------eeccCCCceeeeEeecC----CCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-----cEEEEEECCCCC
Confidence                   22335567888888654    56777999999999999999999998888887765     899999999998


Q ss_pred             E-EEEe-cCCeEEEEEccCCCCceeee--------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-
Q 023672          187 K-IFAG-YNKSVRVFDVHRPGRDFEKY--------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-  255 (279)
Q Consensus       187 ~-l~~~-~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-  255 (279)
                      . ++++ .|+.|++||+++........        ........+|...|.+++|+| ++.+|++++.||.|++||++++ 
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCc
Confidence            4 6655 99999999998753222222        112222357889999999999 8999999999999999998653 


Q ss_pred             ----------------------------------------------eEEEEEeecCCCEEEEEEccCCCC
Q 023672          256 ----------------------------------------------ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       256 ----------------------------------------------~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                                                                    +++..+.+|...|++++|+|+|++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  348 (408)
T 4a11_B          279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE  348 (408)
T ss_dssp             BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTE
T ss_pred             cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCE
Confidence                                                          456677889999999999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-28  Score=197.35  Aligned_cols=186  Identities=12%  Similarity=0.204  Sum_probs=150.4

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      |.+.|++++|+|++++|++|+.||.|++||.. +...                 .....+...|.+++|       +|++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~-----------------~~~~~~~~~v~~~~~-------~~~~  161 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALL-----------------NVLNFHRAPIVSVKW-------NKDG  161 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEE-----------------EEECCCCSCEEEEEE-------CTTS
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCee-----------------eeccCCCccEEEEEE-------CCCC
Confidence            78899999999999999999999999999943 2211                 122346678888887       6788


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCcc------------------------------------------------
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------------------------------  170 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------------------------  170 (279)
                      .+|++++.|+.|++||+.+++.+..+..+...                                                
T Consensus       162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~  241 (425)
T 1r5m_A          162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG  241 (425)
T ss_dssp             SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE
T ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee
Confidence            89999999999999999888776655433221                                                


Q ss_pred             ---ccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672          171 ---DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (279)
Q Consensus       171 ---~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~  246 (279)
                         .+...|.+++|+|++++++++ .|+.|++||+++. .   ....+    .+|...|.+++|+| ++ +|++++.|+.
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~---~~~~~----~~~~~~i~~~~~~~-~~-~l~~~~~d~~  311 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-N---SQNCF----YGHSQSIVSASWVG-DD-KVISCSMDGS  311 (425)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-S---CSEEE----CCCSSCEEEEEEET-TT-EEEEEETTSE
T ss_pred             eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-c---cceEe----cCCCccEEEEEECC-CC-EEEEEeCCCc
Confidence               223478899999999999866 8999999999873 2   22222    57888999999999 77 9999999999


Q ss_pred             EEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          247 SAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       247 i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |++||+++++++..+..|..+|.+++|+|+|++
T Consensus       312 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          312 VRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEEEECTTSSE
T ss_pred             EEEEECCCCcEeEecccCCccEEEEEEcCCCCE
Confidence            999999999999999999999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2e-29  Score=202.85  Aligned_cols=215  Identities=16%  Similarity=0.125  Sum_probs=164.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC----C---CeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD----G---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      .+++||+.+............+.+|...|.+++|+|+    +   ++|++++.||.|++||+.++.....          
T Consensus        37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~----------  106 (397)
T 1sq9_A           37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK----------  106 (397)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC----------
T ss_pred             EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc----------
Confidence            6788999887732222233366789999999999999    9   9999999999999999986542100          


Q ss_pred             CcccceeeecC-----CCceEEEEeeCcccccCCCCcE-EEEecCCCcEEEEECCC------CeeeE-----EEec----
Q 023672          108 DSYEASLVVTE-----GESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHLWDATT------GLLRC-----TYRA----  166 (279)
Q Consensus       108 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~i~d~~~------~~~~~-----~~~~----  166 (279)
                        ........+     ...|.+++|++..   .|++.+ |++++.|+.|++||+++      ++.+.     .+..    
T Consensus       107 --~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (397)
T 1sq9_A          107 --VIFEKLDLLDSDMKKHSFWALKWGASN---DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES  181 (397)
T ss_dssp             --EEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred             --ccceeecccccccCCCcEEEEEEeecc---CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc
Confidence              000112223     4789999884210   067889 99999999999999998      66555     5532    


Q ss_pred             ---cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCC---C---CCceEEEEEccCCCc
Q 023672          167 ---YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG---Q---AGIMSAIAFSPTHTG  236 (279)
Q Consensus       167 ---~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~sp~~~~  236 (279)
                         +..     .|.+++|+|++ +++++ .|+.|++||+++.    +....+    ..   |   ...|.+++|+| ++.
T Consensus       182 ~~~~~~-----~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~----~~~~~~----~~~~~h~~~~~~i~~i~~~~-~~~  246 (397)
T 1sq9_A          182 PMTPSQ-----FATSVDISERG-LIATGFNNGTVQISELSTL----RPLYNF----ESQHSMINNSNSIRSVKFSP-QGS  246 (397)
T ss_dssp             SSSSCC-----CCCEEEECTTS-EEEEECTTSEEEEEETTTT----EEEEEE----ECCC---CCCCCEEEEEECS-STT
T ss_pred             ccCCCC-----CceEEEECCCc-eEEEEeCCCcEEEEECCCC----ceeEEE----eccccccccCCccceEEECC-CCC
Confidence               333     78999999999 88866 9999999999873    233333    34   7   88999999999 899


Q ss_pred             EEEEEeCC---CcEEEEecCCCeEEEEEee-------------cCCCEEEEEEccCCCC
Q 023672          237 MLAIGSYS---QTSAIYREDNMELLYVLHG-------------QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       237 ~l~~~~~d---g~i~~wd~~~~~~~~~~~~-------------~~~~v~~~~~spdg~~  279 (279)
                      +|++++.|   |.|++||+++++++..+..             |...|.+++|+|+|++
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  305 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET  305 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCE
Confidence            99999999   9999999999999999998             9999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1e-28  Score=196.89  Aligned_cols=190  Identities=16%  Similarity=0.229  Sum_probs=155.2

Q ss_pred             CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      ..|.+.|++++|+|++++|++++.|+.|++||+.++...               .......|...|.+++|       +|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------~~~~~~~h~~~v~~~~~-------~~   62 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------QVHELKEHNGQVTGVDW-------AP   62 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------EEEEEECCSSCEEEEEE-------ET
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------eeeeecCCCCcccEEEE-------eC
Confidence            448899999999999999999999999999999865310               00123356778999988       56


Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEe--ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYR--AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ++.+|++++.|+.|++||+.+++....+.  .+..     .|.+++|+|++++++++ .|+.|++||++.. ........
T Consensus        63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~  136 (372)
T 1k8k_C           63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR-----AARCVRWAPNEKKFAVGSGSRVISICYFEQE-NDWWVCKH  136 (372)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS-----CEEEEEECTTSSEEEEEETTSSEEEEEEETT-TTEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC-----ceeEEEECCCCCEEEEEeCCCEEEEEEecCC-Ccceeeee
Confidence            78999999999999999999887655543  2333     89999999999999966 8999999999974 22222222


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec------------------CCCeEEEEEeecCCCEEEEEEcc
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE------------------DNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~------------------~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      +   ..+|...|.+++|+| ++.+|++++.||.|++||+                  .+++++..+..|...|.+++|+|
T Consensus       137 ~---~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (372)
T 1k8k_C          137 I---KKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  212 (372)
T ss_dssp             E---CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             e---ecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence            2   157788999999999 8999999999999999995                  46788889989999999999999


Q ss_pred             CCC
Q 023672          276 SAY  278 (279)
Q Consensus       276 dg~  278 (279)
                      +|+
T Consensus       213 ~~~  215 (372)
T 1k8k_C          213 NGS  215 (372)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.5e-29  Score=218.09  Aligned_cols=189  Identities=10%  Similarity=0.063  Sum_probs=154.5

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+..+....                  ....+...|.+++|       +
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~------------------~~~~~~~~V~~l~f-------s   67 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV------------------IKLEDRSAIKEMRF-------V   67 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE------------------EECSSCCCEEEEEE-------E
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE------------------EEcCCCCCEEEEEE-------c
Confidence            4589999999999999999999999999999998754221                  22335668999988       5


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee-
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST-  213 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~-  213 (279)
                      | +++|++++.|++|++||+++++.+..+..+ .     .|++++|+|+++++++| .||.|++||+++. ... .... 
T Consensus        68 p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~-~-----~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~-~~~i~  138 (902)
T 2oaj_A           68 K-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP-G-----KITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLS-SFKLD  138 (902)
T ss_dssp             T-TTEEEEEETTCEEEEEETTTCSEEEEEECS-S-----CEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEE-EEEEC
T ss_pred             C-CCEEEEEECcCeEEEEECCCCcEEEEEcCC-C-----CEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccc-cceec
Confidence            5 669999999999999999999988887633 2     89999999999999977 9999999999873 211 1100 


Q ss_pred             -cc---cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec------------------CCCEEEE
Q 023672          214 -LK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------------EGGVTHV  271 (279)
Q Consensus       214 -~~---~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~  271 (279)
                       ..   ....+|...|.+++|+|+++..|++|+.||.| +||+++++++..+..|                  ...|+++
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence             00   23368899999999999556799999999999 9999999999888766                  4679999


Q ss_pred             EEccCCCC
Q 023672          272 SKLSSAYT  279 (279)
Q Consensus       272 ~~spdg~~  279 (279)
                      +|+|||++
T Consensus       218 ~fspdg~~  225 (902)
T 2oaj_A          218 LYHPNSLH  225 (902)
T ss_dssp             EECTTSSE
T ss_pred             EEcCCCCE
Confidence            99999963

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-28  Score=188.90  Aligned_cols=215  Identities=15%  Similarity=0.166  Sum_probs=159.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc-------------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------------  101 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------  101 (279)
                      .+++||+.+.....      .+..|.+.|.+++|+|++++|++++.||.|++|++............             
T Consensus        40 ~v~vw~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (313)
T 3odt_A           40 TVRLWSKDDQWLGT------VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ  113 (313)
T ss_dssp             EEEEEEESSSEEEE------EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE
T ss_pred             cEEEEECCCCEEEE------EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec
Confidence            57888887766544      56678999999999999999999999999999998764321110000             


Q ss_pred             ---cccCCCCccc--------ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec-cCc
Q 023672          102 ---SLAKDQDSYE--------ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-YDA  169 (279)
Q Consensus       102 ---~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~-~~~  169 (279)
                         ......+..+        ......+...+.++.|.|      +++..+++++.|+.|++||  .++....+.. +..
T Consensus       114 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~  185 (313)
T 3odt_A          114 DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS------FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND  185 (313)
T ss_dssp             TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEE------TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS
T ss_pred             CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEcc------CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc
Confidence               0000000000        011123444555555532      2788999999999999999  4555666655 443


Q ss_pred             cccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEE
Q 023672          170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI  249 (279)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~  249 (279)
                           .+.+++|+|++.+++++.|+.|++||++++    +....+    .+|...|.+++|+| ++ .|++++.||.|++
T Consensus       186 -----~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~----~~~~~~----~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~i  250 (313)
T 3odt_A          186 -----VVRHLAVVDDGHFISCSNDGLIKLVDMHTG----DVLRTY----EGHESFVYCIKLLP-NG-DIVSCGEDRTVRI  250 (313)
T ss_dssp             -----CEEEEEEEETTEEEEEETTSEEEEEETTTC----CEEEEE----ECCSSCEEEEEECT-TS-CEEEEETTSEEEE
T ss_pred             -----cEEEEEEcCCCeEEEccCCCeEEEEECCch----hhhhhh----hcCCceEEEEEEec-CC-CEEEEecCCEEEE
Confidence                 899999999998443559999999999974    233333    57889999999999 77 6889999999999


Q ss_pred             EecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          250 YREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       250 wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ||+++++++..+..|...|.+++|+|+|+
T Consensus       251 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          251 WSKENGSLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             ECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             EECCCCceeEEEeccCceEEEEEEccCCC
Confidence            99999999999999999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.5e-28  Score=214.88  Aligned_cols=218  Identities=14%  Similarity=0.197  Sum_probs=168.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc-------cccc---
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-------CSLA---  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-------~~~~---  104 (279)
                      .+.+||+.++....      .+.+|.+.|.+++|+|++++|++|+.||.|++||+.++........       ....   
T Consensus        36 ~v~iwd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           36 RVEIWNYETQVEVR------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEEEEETTTTEEEE------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EEEEEECCCCceEE------EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC
Confidence            57889988877655      5668999999999999999999999999999999988765321110       0000   


Q ss_pred             -----CCCCccc-----------ceeeecCCCceEEEEeeCcccccCC-CCcEEEEecCCCcEEEEECCCCeeeEEEecc
Q 023672          105 -----KDQDSYE-----------ASLVVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAY  167 (279)
Q Consensus       105 -----~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~  167 (279)
                           ...+..+           ......+...|.+++|       +| ++..|++++.|+.|++||+.++.....+..+
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  182 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF-------NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE-------ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE-------EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence                 0011111           1111223344555555       66 7789999999999999999888777776654


Q ss_pred             CccccccceeeEEECC--CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC
Q 023672          168 DAVDEITAAFSVAFNP--TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (279)
Q Consensus       168 ~~~~~~~~v~~~~~~~--~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d  244 (279)
                      ..    ..+.+++|+|  ++.+++++ .|+.|++||++++    .....+    .+|...|.+++|+| ++.+|++++.|
T Consensus       183 ~~----~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~~~d  249 (814)
T 3mkq_A          183 QE----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATL----EGHMSNVSFAVFHP-TLPIIISGSED  249 (814)
T ss_dssp             CT----TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEE----ECCSSCEEEEEECS-SSSEEEEEETT
T ss_pred             CC----CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEE----cCCCCCEEEEEEcC-CCCEEEEEeCC
Confidence            41    2788999999  89999876 9999999999874    333333    57888999999999 89999999999


Q ss_pred             CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          245 QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       245 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      |.|++||+.+++.+..+..|...+.+++|+|+|+
T Consensus       250 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR  283 (814)
T ss_dssp             SCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred             CeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence            9999999999999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=9.1e-29  Score=196.11  Aligned_cols=214  Identities=12%  Similarity=0.113  Sum_probs=166.2

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC---CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .-.+.+||+.+++....     ...+|.+.|.+++|+|+   +++|++|+.||.|++||+.++...              
T Consensus        43 d~~v~iw~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------  103 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLL-----REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP--------------  103 (357)
T ss_dssp             CEEEEEEEECSSSEEEE-----EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC--------------
T ss_pred             CcEEEEEeCCCCcccce-----eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc--------------
Confidence            34678899887765432     23368999999999998   699999999999999999865410              


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEE----ECCC
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVA----FNPT  184 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~  184 (279)
                        ......|...|.++.|.+. ++++|++.+|++++.|+.|++||+++++ ....+..+.... ...+.+++    |+|+
T Consensus       104 --~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          104 --VYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-KRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             --SEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-CCCEEEEEEECCCC-C
T ss_pred             --EEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-CCceEEEEEEeccCCC
Confidence              1123457778999998764 4679999999999999999999999886 666665543211 22677887    7889


Q ss_pred             CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC--CCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       185 ~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                      +++++++ .|+.|++||++++    .....     ..|...|.+++|+|.  ++.+|++++.||.|++||+++++++..+
T Consensus       180 ~~~l~~~~~d~~i~i~d~~~~----~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          180 ERVVCAGYDNGDIKLFDLRNM----ALRWE-----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             CCEEEEEETTSEEEEEETTTT----EEEEE-----EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             CCEEEEEccCCeEEEEECccC----ceeee-----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence            9999976 8999999999974    22111     366788999999994  4678999999999999999987765444


Q ss_pred             e-----ecCCCEEEEEEccCCC
Q 023672          262 H-----GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       262 ~-----~~~~~v~~~~~spdg~  278 (279)
                      .     +|...|++++|+|+|+
T Consensus       251 ~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          251 ASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             EEEEEECCSSCEEEEEEETTEE
T ss_pred             eeeccCCCcCCEEEEEECCCCC
Confidence            4     8999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=5.9e-28  Score=198.30  Aligned_cols=196  Identities=17%  Similarity=0.241  Sum_probs=159.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++...      .+.+|.+.|.+++|+|++ +|++|+.||+|++||+.++....                 .
T Consensus       143 ~i~vwd~~~~~~~~------~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-----------------~  198 (464)
T 3v7d_B          143 MIRVYDSINKKFLL------QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH-----------------V  198 (464)
T ss_dssp             CEEEEETTTTEEEE------EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE-----------------E
T ss_pred             cEEEEECCCCcEEE------EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE-----------------E
Confidence            46778887776554      677999999999999988 89999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeee-----------------------EEEeccCccc
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-----------------------CTYRAYDAVD  171 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~-----------------------~~~~~~~~~~  171 (279)
                      ...|...|.++.|.+     .+++.++++++.|+.|++||++++...                       ..+..+..  
T Consensus       199 ~~~h~~~v~~l~~~~-----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  271 (464)
T 3v7d_B          199 FEGHNSTVRCLDIVE-----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA--  271 (464)
T ss_dssp             ECCCSSCEEEEEEEE-----SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS--
T ss_pred             ECCCCCccEEEEEec-----CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc--
Confidence            334677899998854     467889999999999999999887533                       22333332  


Q ss_pred             cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                         .+.++  ++++.+++++ .|+.|++||++++    +....+    .+|...|.+++|+| ++.+|++|+.||.|++|
T Consensus       272 ---~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~----~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vw  337 (464)
T 3v7d_B          272 ---SVRTV--SGHGNIVVSGSYDNTLIVWDVAQM----KCLYIL----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIW  337 (464)
T ss_dssp             ---CEEEE--EEETTEEEEEETTSCEEEEETTTT----EEEEEE----CCCSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred             ---eEEEE--cCCCCEEEEEeCCCeEEEEECCCC----cEEEEe----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence               55554  6778888866 9999999999874    333344    68899999999999 89999999999999999


Q ss_pred             ecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          251 REDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      |+++++++..+.+|...|.+++|++
T Consensus       338 d~~~~~~~~~~~~h~~~v~~~~~~~  362 (464)
T 3v7d_B          338 DLENGELMYTLQGHTALVGLLRLSD  362 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcC
Confidence            9999999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.9e-28  Score=194.37  Aligned_cols=199  Identities=15%  Similarity=0.253  Sum_probs=160.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.+++...      .+.+|.+.|.+++|  ++++|++|+.||.|++||+......                ...
T Consensus       157 ~i~iwd~~~~~~~~------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~  212 (401)
T 4aez_A          157 LVDIYDVESQTKLR------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ----------------IGT  212 (401)
T ss_dssp             CEEEEETTTCCEEE------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE----------------EEE
T ss_pred             eEEEEECcCCeEEE------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce----------------eeE
Confidence            56788888776654      56789999999999  4679999999999999999843210                113


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--  191 (279)
                      ...+...|.++.|       +|++.+|++++.|+.|++||+++++....+..+..     .|.+++|+|++..++ ++  
T Consensus       213 ~~~~~~~v~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          213 LQGHSSEVCGLAW-------RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-----AVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-----CCCEEEECTTSTTEEEEECC
T ss_pred             EcCCCCCeeEEEE-------cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-----eEEEEEECCCCCCEEEEecC
Confidence            3456778999987       67899999999999999999999998888877765     899999999875444 43  


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEE--EeCCCcEEEEecCCCeEE--EEEeecCC
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI--GSYSQTSAIYREDNMELL--YVLHGQEG  266 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~--~~~dg~i~~wd~~~~~~~--~~~~~~~~  266 (279)
                       .|+.|++||++++ .   ....+     .+...|.+++|+| ++.+|++  |+.||.|++||+.+++..  ..+.+|..
T Consensus       281 s~d~~i~i~d~~~~-~---~~~~~-----~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~  350 (401)
T 4aez_A          281 TMDKQIHFWNAATG-A---RVNTV-----DAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT  350 (401)
T ss_dssp             TTTCEEEEEETTTC-C---EEEEE-----ECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS
T ss_pred             CCCCEEEEEECCCC-C---EEEEE-----eCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC
Confidence             5999999999974 2   22233     3456799999999 8888888  558999999999997654  45778999


Q ss_pred             CEEEEEEccCCCC
Q 023672          267 GVTHVSKLSSAYT  279 (279)
Q Consensus       267 ~v~~~~~spdg~~  279 (279)
                      .|.+++|+|||++
T Consensus       351 ~v~~~~~s~dg~~  363 (401)
T 4aez_A          351 RVLYSALSPDGRI  363 (401)
T ss_dssp             CCCEEEECTTSSE
T ss_pred             CEEEEEECCCCCE
Confidence            9999999999963

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.6e-28  Score=196.85  Aligned_cols=200  Identities=18%  Similarity=0.296  Sum_probs=154.3

Q ss_pred             ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.............    ........+...|.+++|+|.   
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~---  110 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS----IGRDHPDVHRYSVETVQWYPH---  110 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE----ECTTCTTCCSSCEEEEEECTT---
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc----ccccccccCCCcEEEEEEccC---
Confidence            6778999999999999 99999999999999999999765432211000000    000001236778999988432   


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC---CEEEEe-cCCeEEEEEccCCCCcee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                         ++.+|++++.|+.|++||+.+++....+....      .+.++.|+|.+   .+++++ .|+.|++||++++ .   
T Consensus       111 ---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~---  177 (408)
T 4a11_B          111 ---DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-S---  177 (408)
T ss_dssp             ---CTTCEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-C---
T ss_pred             ---CCcEEEEEeCCCeEEEeeCCCCccceeccCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-c---
Confidence               67799999999999999999999888877443      78899999854   477766 9999999999874 2   


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCCe-EEEEE---------------eecCCCEEEEE
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNME-LLYVL---------------HGQEGGVTHVS  272 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~~-~~~~~---------------~~~~~~v~~~~  272 (279)
                      ....+    .+|...|.+++|+| ++. +|++|+.||.|++||++++. ++..+               ..|...|.+++
T Consensus       178 ~~~~~----~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          178 CSHIL----QGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             CCEEE----CCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             eeeee----cCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            22233    57889999999999 665 69999999999999998875 44554               56888999999


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      |+|+|++
T Consensus       253 ~~~~~~~  259 (408)
T 4a11_B          253 FTSDGLH  259 (408)
T ss_dssp             ECTTSSE
T ss_pred             EcCCCCE
Confidence            9999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=6.6e-28  Score=219.44  Aligned_cols=209  Identities=16%  Similarity=0.168  Sum_probs=172.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||..++....      .+.+|.+.|.+++|+|++++|++|+.||+|+|||+.++....                 .
T Consensus       638 ~i~vw~~~~~~~~~------~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-----------------~  694 (1249)
T 3sfz_A          638 TLQVFKAETGEKLL------DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH-----------------T  694 (1249)
T ss_dssp             CEEEEETTTCCEEE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------------E
T ss_pred             eEEEEECCCCCEEE------EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE-----------------E
Confidence            46788888777654      677999999999999999999999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...|...|.++.|+|.     .++.++++|+.|+.|++||+++++....+..|..     .|.+++|+|++++++++ .|
T Consensus       695 ~~~~~~~v~~~~~~~~-----~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          695 YDEHSEQVNCCHFTNK-----SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-----SVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             EECCSSCEEEEEECSS-----SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-----CEEEEEECSSTTEEEEEESS
T ss_pred             EcCCCCcEEEEEEecC-----CCceEEEEEeCCCeEEEEECCCcchhheecCCCC-----CEEEEEEecCCCEEEEEECC
Confidence            3356778999988542     2566899999999999999999999998888776     89999999999999966 99


Q ss_pred             CeEEEEEccCCCCceeeee------------------------------------------------ecccccCCCCCce
Q 023672          194 KSVRVFDVHRPGRDFEKYS------------------------------------------------TLKGNKEGQAGIM  225 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~v  225 (279)
                      +.|++||++++. ......                                                .......+|...+
T Consensus       765 g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          765 GTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SEEEEEEGGGTE-EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CeEEEEeCCCCc-ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999998631 111100                                                0000113778899


Q ss_pred             EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       226 ~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .+++|+| ++.++++++.||.|++||+.++..+..+.+|.+.|.+++|+|+|+
T Consensus       844 ~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          844 QYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS  895 (1249)
T ss_dssp             CEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC
Confidence            9999999 899999999999999999999999999999999999999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.3e-29  Score=215.57  Aligned_cols=209  Identities=18%  Similarity=0.220  Sum_probs=163.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC--CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||+.....    .....+.+|.+.|++++|+|+  +++|++|+.||.|++||+.++....               .
T Consensus        32 ~I~vwd~~~~~~----~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~---------------~   92 (753)
T 3jro_A           32 TIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ---------------I   92 (753)
T ss_dssp             EEEEEEEETTEE----EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE---------------E
T ss_pred             cEEEEecCCCCC----ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc---------------c
Confidence            567787663221    223367899999999999987  9999999999999999998653110               0


Q ss_pred             eeeecCCCceEEEEeeCcccccCCC--CcEEEEecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECC-----
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPT--SCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNP-----  183 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-----  183 (279)
                      .....+...|.++.|       +|+  +..+++|+.||.|++||++++..  ...+..+..     .|.+++|+|     
T Consensus        93 ~~~~~h~~~V~~v~~-------sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-----~v~~l~~~p~~~~~  160 (753)
T 3jro_A           93 AVHAVHSASVNSVQW-------APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEE  160 (753)
T ss_dssp             EEECCCSSCEEEEEE-------CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-----CEEEEEECCCC---
T ss_pred             ccccCCCCCeEEEEE-------CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-----ceEEEEecCccccc
Confidence            123446778999988       556  88999999999999999988733  334444444     899999999     


Q ss_pred             --------CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC---CcEEEEEeCCCcEEEEe
Q 023672          184 --------TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       184 --------~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~~l~~~~~dg~i~~wd  251 (279)
                              ++.++++| .||.|++||++++.........+    .+|...|.+++|+| +   +.+|++|+.||.|++||
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL----EGHSDWVRDVAWSP-TVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE----CCCSSCEEEEEECC-CCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee----cCCCCcEEEEEecc-CCCCCCEEEEEecCCEEEEec
Confidence                    47888866 99999999999854443444444    68999999999999 6   89999999999999999


Q ss_pred             cCCCe-----EEEEEeecCCCEEEEEEccCCCC
Q 023672          252 EDNME-----LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       252 ~~~~~-----~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +++++     .+.....|.+.|++++|+|+|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  268 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  268 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCE
Confidence            99874     33334458889999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.2e-28  Score=195.96  Aligned_cols=211  Identities=11%  Similarity=0.229  Sum_probs=165.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC----CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+.+||..++......... ....|...|.+++|+|+    +++|++|+.||.|++||+.+++...              
T Consensus        45 ~v~vw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--------------  109 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSY-VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--------------  109 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEE-ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--------------
T ss_pred             EEEEEEcCCCcEEEeeeec-cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--------------
Confidence            5788998877766544433 23347889999999998    6799999999999999998754321              


Q ss_pred             cceeeecCCCceEEEEeeCcccccCC-CCcEEEEecCCCcEEEEECCCCeeeEEE---eccCccccccceeeEEECCCCC
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTY---RAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                         ....+...|.+++|       +| ++.+|++++.|+.|++||+++++.+..+   ..+..     .|.+++|+|++.
T Consensus       110 ---~~~~~~~~i~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~  174 (366)
T 3k26_A          110 ---HYVGHGNAINELKF-------HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-----EVLSADYDLLGE  174 (366)
T ss_dssp             ---EEESCCSCEEEEEE-------CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-----CEEEEEECTTSS
T ss_pred             ---eecCCCCcEEEEEE-------CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-----ceeEEEECCCCC
Confidence               22346778999988       55 7889999999999999999999988887   44444     899999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeee---------------------ecccccCCCCCceEEEEEccCCCcEEEEEeCC
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYS---------------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d  244 (279)
                      +++++ .|+.|++||++++ .....+.                     .......+|...|.+++|++   .+|++++.|
T Consensus       175 ~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d  250 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLILSKSCE  250 (366)
T ss_dssp             EEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET---TEEEEECSS
T ss_pred             EEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC---CEEEEEecC
Confidence            99966 9999999999863 1110000                     00011134889999999984   599999999


Q ss_pred             CcEEEEecCCCe--------------EEEEEeecCCCEEEEEEccC--CCC
Q 023672          245 QTSAIYREDNME--------------LLYVLHGQEGGVTHVSKLSS--AYT  279 (279)
Q Consensus       245 g~i~~wd~~~~~--------------~~~~~~~~~~~v~~~~~spd--g~~  279 (279)
                      +.|++||++++.              .+..+..|...|++++|+|+  |++
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence            999999998764              37888899999999999999  763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=200.84  Aligned_cols=195  Identities=18%  Similarity=0.194  Sum_probs=147.8

Q ss_pred             cc-CCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           55 TS-SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        55 ~~-~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+.....            .........|...|.+++|     
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------------~~~~~~~~~h~~~v~~~~~-----  119 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------------VYSSSLTYDCSSTVTQITM-----  119 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------------CCSCSEEEECSSCEEEEEE-----
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------------ccceeeeccCCCCEEEEEE-----
Confidence            44 88999999999999 99999999999999999987521100            0011133457889999988     


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECC---CCeeeEEEeccCcc-----c--cccceeeEE--ECCCCCEEEEe-cCCeEEEE
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDAT---TGLLRCTYRAYDAV-----D--EITAAFSVA--FNPTGTKIFAG-YNKSVRVF  199 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~---~~~~~~~~~~~~~~-----~--~~~~v~~~~--~~~~~~~l~~~-~d~~i~~~  199 (279)
                        +|++.+|++++.|+.|++||+.   +++....+..+...     .  ....+.++.  +++++.+++++ .|+.|++|
T Consensus       120 --~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          120 --IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             --CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             --eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence              6788999999999999999995   45444433322100     0  112556666  66889899866 99999999


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEcc
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLS  275 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~sp  275 (279)
                      |++++ .   ....+..  ..|...|.+++|+| ++.+|++|+.||.|++||+++++++..+. .|..+|.+++|+|
T Consensus       198 d~~~~-~---~~~~~~~--~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          198 DIRTL-E---RLQIIEN--SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             ETTTC-C---EEEEEEC--CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             eCCCC-e---eeEEEcc--CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            99884 2   2233311  12788999999999 89999999999999999999999999886 6778999996665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=3e-28  Score=193.31  Aligned_cols=191  Identities=9%  Similarity=0.096  Sum_probs=133.5

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ...+|.+.|++++|+|||++|++|+.|+ ++||++.++...                   ...+...+..+.+       
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------------~~~~~~~~~~~~~-------   66 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------------MSQEMRHLSKVRM-------   66 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------------EEEECSCCCEEEE-------
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------------eeeecCCeEEEEE-------
Confidence            4578999999999999999999998775 789998754321                   1111113444444       


Q ss_pred             CCCCcEE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC----------------------------
Q 023672          135 DPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG----------------------------  185 (279)
Q Consensus       135 ~~~~~~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------  185 (279)
                      .++++.+ ++++.|++|++||+.+++.+..+....      .|.++.|+++.                            
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~  140 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG  140 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred             cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence            4455555 567888999999999999888776433      67777777642                            


Q ss_pred             -------CEEE-E-e-cCCeEEEEEccCCCCcee----e----eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-
Q 023672          186 -------TKIF-A-G-YNKSVRVFDVHRPGRDFE----K----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-  246 (279)
Q Consensus       186 -------~~l~-~-~-~d~~i~~~d~~~~~~~~~----~----~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-  246 (279)
                             .+++ + | .||.|++||++++.....    .    .......+.+|...|.+++|+| ++.+|++|+.|++ 
T Consensus       141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSE
T ss_pred             ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCE
Confidence                   1222 2 3 566666666665210000    0    0000122378999999999999 9999999999998 


Q ss_pred             EEEEecCCCeEEEEEe-e-cCCCEEEEEEccCCCC
Q 023672          247 SAIYREDNMELLYVLH-G-QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       247 i~~wd~~~~~~~~~~~-~-~~~~v~~~~~spdg~~  279 (279)
                      |++||+++++++..+. + |...|.+++|+|||++
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~  254 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK  254 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE
Confidence            9999999999999998 5 9999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-28  Score=210.95  Aligned_cols=191  Identities=17%  Similarity=0.266  Sum_probs=152.6

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|++++|++|+.||+|+|||+.++...               .......|..+|.+++|+|.    
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~---------------~~~~l~~h~~~V~~l~~s~~----   64 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---------------LIDTLTGHEGPVWRVDWAHP----   64 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE---------------EEEEECCCSSCEEEEEECCT----
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc---------------cceeccCCcCceEEEEecCC----
Confidence            67899999999999999999999999999999998743210               01123456789999988431    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~  209 (279)
                       .++++|++|+.||.|++||+.+++  ....+..+..     .|.+++|+|+  +..++++ .||.|++||++.+... .
T Consensus        65 -~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~-----~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-~  137 (753)
T 3jro_A           65 -KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-S  137 (753)
T ss_dssp             -TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-C
T ss_pred             -CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC-----CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-c
Confidence             238899999999999999999987  5556655655     8999999999  8899866 9999999999874221 1


Q ss_pred             eeeecccccCCCCCceEEEEEccC------------CCcEEEEEeCCCcEEEEecCCC----eEEEEEeecCCCEEEEEE
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~------------~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~  273 (279)
                      . ..+    .+|...|.+++|+|.            ++.+|++|+.||.|++||++++    .++..+.+|..+|++++|
T Consensus       138 ~-~~~----~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  212 (753)
T 3jro_A          138 P-III----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (753)
T ss_dssp             C-EEE----ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             e-eEe----ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe
Confidence            1 122    578889999999994            3889999999999999999887    566788899999999999


Q ss_pred             ccC
Q 023672          274 LSS  276 (279)
Q Consensus       274 spd  276 (279)
                      +|+
T Consensus       213 sp~  215 (753)
T 3jro_A          213 SPT  215 (753)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            999

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.7e-28  Score=196.32  Aligned_cols=186  Identities=9%  Similarity=0.008  Sum_probs=149.3

Q ss_pred             CCCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCC--CCccccccccccccCCCCcccceee-ecCCCceEEEEeeCccc
Q 023672           57 SIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMS  132 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  132 (279)
                      .+|.+.|.+++|+|++++| ++|+.||.|+|||+.  ++.....                +. ..+...|.+++|     
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~----------------~~~~~~~~~v~~~~~-----  157 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL----------------RKRFCFSKRPNAISI-----  157 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE----------------EEEEECSSCEEEEEE-----
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee----------------eecccCCCCceEEEE-----
Confidence            3677789999999999996 899999999999998  5432111                11 134567888877     


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeE----EEeccCccccccceeeEEECCC---CCEEEEe-cCCeEEEEEccCC
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC----TYRAYDAVDEITAAFSVAFNPT---GTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~-~d~~i~~~d~~~~  204 (279)
                        +|++.+|++++.++.|++|++.+++...    .+..+..     .|.+++|+|+   +++|+++ .|+.|++||++++
T Consensus       158 --sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          158 --AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS-----MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             --CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS-----CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             --cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC-----ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence              7789999999999999999998876543    4555554     8999999999   8888866 9999999999874


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec--------------------
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--------------------  264 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--------------------  264 (279)
                       ..   ...+   ..+|...|.+++|+  ++.+|++|+.|+.|++||+++++++..+..+                    
T Consensus       231 -~~---~~~~---~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          231 -FI---VDKW---LFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             -TC---EEEE---CCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             -ce---eeee---ecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence             22   1121   15889999999999  6789999999999999999999998888733                    


Q ss_pred             -----CCCEEEEEEccCCCC
Q 023672          265 -----EGGVTHVSKLSSAYT  279 (279)
Q Consensus       265 -----~~~v~~~~~spdg~~  279 (279)
                           ...|.+++|+|+|++
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~  321 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPF  321 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSE
T ss_pred             ccccceEEEEEEEEeCCCCE
Confidence                 357999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=3.7e-28  Score=193.36  Aligned_cols=178  Identities=11%  Similarity=0.065  Sum_probs=135.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+.....      .+ .|.+.|.+++|+|||++|++++.| .+.+|+..++.....               ..
T Consensus       158 ~i~iwd~~~~~~~~------~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~---------------~~  214 (365)
T 4h5i_A          158 IMRIIDPSDLTEKF------EI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIAR---------------KT  214 (365)
T ss_dssp             EEEEEETTTTEEEE------EE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEE---------------EC
T ss_pred             EEEEeECCCCcEEE------Ee-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceee---------------ee
Confidence            57889988877654      22 377889999999999999999865 566666655432111               12


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCC----cEEEEECCCCeee----EEEeccCccccccceeeEEECCCCC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH----PIHLWDATTGLLR----CTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~i~d~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                      ...+...|..++|       +|++..+++++.|+    .+++|++......    ..+..+..     .|++++|+|+|+
T Consensus       215 ~~~~~~~v~~v~f-------spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~V~~~~~Spdg~  282 (365)
T 4h5i_A          215 DFDKNWSLSKINF-------IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-----GITSMDVDMKGE  282 (365)
T ss_dssp             CCCTTEEEEEEEE-------EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-----CEEEEEECTTSC
T ss_pred             cCCCCCCEEEEEE-------cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC-----CeEeEEECCCCC
Confidence            2345567888877       67899999998887    6888998776532    23334443     899999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      +|++| .|+.|+|||++++    +.+..+   ..+|...|++++|+| ++.+|++|+.|++|+|||+...
T Consensus       283 ~lasgs~D~~V~iwd~~~~----~~~~~~---~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          283 LAVLASNDNSIALVKLKDL----SMSKIF---KQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEETTSCEEEEETTTT----EEEEEE---TTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred             ceEEEcCCCEEEEEECCCC----cEEEEe---cCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence            99976 9999999999984    333332   268999999999999 9999999999999999999643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.6e-29  Score=201.77  Aligned_cols=195  Identities=11%  Similarity=0.075  Sum_probs=147.6

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCC---CCccccccccccccCCCCcccceeeec---CCCceEEEEeeCcc
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP---ENGISYDVNACSLAKDQDSYEASLVVT---EGESVYDFCWFPHM  131 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~  131 (279)
                      +|.+.|.+++|+|++++|++|+.||+|++||+.   ++........        ..+..+...   +...+.++.+    
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~----  176 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC--------ECIRKINLKNFGKNEYAVRMRA----  176 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE--------EEEEEEEGGGGSSCCCEEEEEE----
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc--------ceeEEEEccCcccccCceEEEE----
Confidence            589999999999999999999999999999995   2222110000        000111111   3445555554    


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec--cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~  208 (279)
                       .+++++.+|++++.|+.|++||+++++.+..+..  +..     .|.+++|+|++++++++ .|+.|++||++++    
T Consensus       177 -~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----  246 (437)
T 3gre_A          177 -FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-----AVSSICIDEECCVLILGTTRGIIDIWDIRFN----  246 (437)
T ss_dssp             -EECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC-----CEEEEEECTTSCEEEEEETTSCEEEEETTTT----
T ss_pred             -EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC-----ceEEEEECCCCCEEEEEcCCCeEEEEEcCCc----
Confidence             2478899999999999999999999999988887  444     89999999999999966 9999999999973    


Q ss_pred             eeeeecccccCCCCCceEEEEEccC---CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      .....+.   ..|...|.+++|+|.   ++.+|++|+.||.|++||+++++++..+.+|...+..+.|+|++
T Consensus       247 ~~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (437)
T 3gre_A          247 VLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE  315 (437)
T ss_dssp             EEEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred             cEEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence            3333321   256678999976651   57799999999999999999999999998776655555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=4e-28  Score=212.17  Aligned_cols=189  Identities=18%  Similarity=0.219  Sum_probs=160.8

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      +.+.+|.+.|++++|+|++++|++|+.||.|+|||+.++....                 ....+..+|.++.|      
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-----------------~~~~~~~~v~~~~~------   63 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-----------------SIQVTETPVRAGKF------   63 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-----------------EEECCSSCEEEEEE------
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-----------------EEecCCCcEEEEEE------
Confidence            3678899999999999999999999999999999998764321                 22346678999988      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                       +|++++|++++.|+.|++||+.+++.+..+..+..     .|.+++|+|++.+++++ .|+.|++||+.++..   ...
T Consensus        64 -s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---~~~  134 (814)
T 3mkq_A           64 -IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---LEQ  134 (814)
T ss_dssp             -EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE---EEE
T ss_pred             -eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce---EEE
Confidence             56788999999999999999999999998887776     89999999999999866 899999999987321   222


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-CCEEEEEEcc--CCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVSKLS--SAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~sp--dg~  278 (279)
                      .+    .+|...|.+++|+|.++..|++++.||.|++||+.++.....+..+. ..+..++|+|  +|.
T Consensus       135 ~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (814)
T 3mkq_A          135 TF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP  199 (814)
T ss_dssp             EE----ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC
T ss_pred             EE----cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC
Confidence            23    57888999999999667899999999999999999988887777655 8899999999  765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=8.2e-28  Score=195.62  Aligned_cols=200  Identities=15%  Similarity=0.223  Sum_probs=151.2

Q ss_pred             ccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ...+|.+.|++++|+|+ +.+|++++.||.|++|++.+......       .............|...+.+++|      
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~------  189 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------PSGECQPDLRLRGHQKEGYGLSW------  189 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------TTCCCCCSEEEECCSSCCCCEEE------
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------ccccCCCcEEecCCCCCeEEEEe------
Confidence            45679999999999997 67999999999999999975311100       00000111133456778888888      


Q ss_pred             cCCCCc-EEEEecCCCcEEEEECCCCee-------eEEEeccCccccccceeeEEECC-CCCEEEEe-cCCeEEEEEccC
Q 023672          134 SDPTSC-VFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHR  203 (279)
Q Consensus       134 ~~~~~~-~l~s~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~~~d~~~  203 (279)
                       +|++. +|++|+.||.|++||+.++..       ...+..+..     .|.+++|+| ++.+++++ .|+.|++||+++
T Consensus       190 -~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          190 -NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-----VVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             -CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-----CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             -CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-----CEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence             56666 999999999999999987422       334444444     899999999 56777765 999999999997


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEeecCCCEEEEEEccCCC
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ... ......+    ..|...|.+++|+|++..+|++|+.||.|++||+++ ..++..+..|...|.+++|+|+|+
T Consensus       264 ~~~-~~~~~~~----~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          264 NNT-SKPSHTV----DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  334 (430)
T ss_dssp             SCS-SSCSEEE----ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred             CCC-CcceeEe----ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence            421 1122222    478889999999994444799999999999999998 567889999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.7e-28  Score=192.74  Aligned_cols=207  Identities=9%  Similarity=-0.013  Sum_probs=149.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++....+.        ...|.++.|+|+   +++++.|++|++|+...........       ........
T Consensus        59 ~v~iwd~~~~~~~~~~~--------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~-------~~~~~~~~  120 (343)
T 3lrv_A           59 ALHFTQLKDSKTITTIT--------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK-------TNKVLREI  120 (343)
T ss_dssp             EEEEEEESSSSCEEEEE--------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-------TCCEEEEE
T ss_pred             cEEEEECCCCcEEEEEe--------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-------CcceeEEe
Confidence            67888988887765332        355778888887   8999999999999887432111100       01111223


Q ss_pred             eecCCCceEEEEeeCcccccCC--CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          115 VVTEGESVYDFCWFPHMSASDP--TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                      ...+...|.+++|       +|  ++.++++++.|++|++||+++++.......+..    ..+.+++|+|++.++++| 
T Consensus       121 ~~~~~~~v~~~~~-------~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          121 EVDSANEIIYMYG-------HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD----VEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             ECCCSSCEEEEEC-------CC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS----CCCCEEEECTTSCEEEEEC
T ss_pred             ecCCCCCEEEEEc-------CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC----CceEEEEECCCCCEEEEEc
Confidence            3345567888877       66  889999999999999999999988665543321    268999999999999976 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCC-CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee---cCCC
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGG  267 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~  267 (279)
                      .|+.|++||++++....   ..+    .. |...|.+++|+| ++.+|++++ |+.|++||+++++.+..+..   |...
T Consensus       190 ~dg~i~iwd~~~~~~~~---~~~----~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~  260 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQAS---SRF----PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFK  260 (343)
T ss_dssp             TTSCEEEEESSCTTSCC---EEC----CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC----
T ss_pred             CCCEEEEEECCCCCCCc---cEE----eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccc
Confidence            99999999999842211   122    44 889999999999 899999999 55999999999876544443   3333


Q ss_pred             E--EEEEEccCCCC
Q 023672          268 V--THVSKLSSAYT  279 (279)
Q Consensus       268 v--~~~~~spdg~~  279 (279)
                      +  .+++|+|+|++
T Consensus       261 ~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          261 TGTVTYDIDDSGKN  274 (343)
T ss_dssp             -CCEEEEECTTSSE
T ss_pred             ccceEEEECCCCCE
Confidence            4  36999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=194.76  Aligned_cols=185  Identities=11%  Similarity=0.094  Sum_probs=141.2

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecC----CCceEEEEeeCcccc
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE----GESVYDFCWFPHMSA  133 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~  133 (279)
                      +|.+.|.+++|+|+|++||+++.||.|+|||..+  .                ...+. ++    ...+.+++|      
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~----------------l~~l~-~~~~~~~~sv~svaf------  137 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M----------------LTNLD-SKGNLSSRTYHCFEW------  137 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E----------------EEECC-CSSCSTTTCEEEEEE------
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e----------------eeecc-CCCccccccEEEEEE------
Confidence            5688999999999999999999999999999642  0                00011 11    125888877      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCee-------eEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCC
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~  206 (279)
                       ||+|++|++|+.||+|++||+.++..       +.++..+.. ++...|.+++|+|+| +++++.|+.|++||+..+. 
T Consensus       138 -SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~-gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~-  213 (588)
T 2j04_A          138 -NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA-GSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS-  213 (588)
T ss_dssp             -CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT-TCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS-
T ss_pred             -cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc-cccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc-
Confidence             88999999999999999999998753       455543331 233489999999999 5556699999999998732 


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE--ccCCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK--LSSAY  278 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--spdg~  278 (279)
                      ......++.   .+|...|.+++|+   +..|++++ +++|++||+.+++......+|.+.|.+++|  +|||+
T Consensus       214 ~~~~~~tL~---~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          214 HQPVSRMIQ---NASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST  280 (588)
T ss_dssp             SCCCEEEEE---CCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE
T ss_pred             cccceeeec---ccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC
Confidence            111111221   3677899999998   37888887 699999999988875444479999999999  99985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.4e-28  Score=195.19  Aligned_cols=215  Identities=15%  Similarity=0.226  Sum_probs=159.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.++.....    .....|...|.+++|+|++++|++|+.||.|++||+.+.....             .....
T Consensus        46 ~v~iw~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~-------------~~~~~  108 (416)
T 2pm9_A           46 SLELWSLLAADSEKP----IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI-------------NSMAR  108 (416)
T ss_dssp             CCEEEESSSGGGCSC----SCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCC-------------CEEEE
T ss_pred             eEEEEEccCCCCCcE----EEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccc-------------cchhh
Confidence            578898887653211    1234588999999999999999999999999999998621100             01112


Q ss_pred             eecCCCceEEEEeeCcccccCCC-CcEEEEecCCCcEEEEECCCCe------eeEEEeccCccccccceeeEEECCC-CC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPT-GT  186 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~-~~  186 (279)
                      ...|...|.+++|       +|+ +.+|++++.|+.|++||+++++      ....+.  ....+...|.+++|+|+ +.
T Consensus       109 ~~~h~~~v~~~~~-------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  179 (416)
T 2pm9_A          109 FSNHSSSVKTVKF-------NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAH  179 (416)
T ss_dssp             CCCSSSCCCEEEE-------CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTT
T ss_pred             ccCCccceEEEEE-------cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCc
Confidence            3456678999888       556 7899999999999999999876      322221  11122238999999999 67


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecc--cccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCC-eEEE
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLY  259 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~-~~~~  259 (279)
                      +++++ .|+.|++||++++ .   ....+.  ....+|...|.+++|+|++..+|++++.|+   .|++||++++ .++.
T Consensus       180 ~l~~~~~dg~v~iwd~~~~-~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~  255 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKAK-K---EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ  255 (416)
T ss_dssp             EEEEESSSSCEEEEETTTT-E---EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred             EEEEEcCCCCEEEEECCCC-C---cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence            88866 9999999999974 2   222221  111334788999999994457999999998   9999999987 6777


Q ss_pred             EEe-ecCCCEEEEEEcc-CCCC
Q 023672          260 VLH-GQEGGVTHVSKLS-SAYT  279 (279)
Q Consensus       260 ~~~-~~~~~v~~~~~sp-dg~~  279 (279)
                      .+. +|...|.+++|+| +|++
T Consensus       256 ~~~~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          256 TLNQGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             CCCSCCSSCEEEEEECSSCSSC
T ss_pred             EeecCccCceeEEEeCCCCCCe
Confidence            888 8999999999999 7763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.3e-27  Score=181.24  Aligned_cols=199  Identities=15%  Similarity=0.181  Sum_probs=145.4

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc-------ccc--------cCCCCcc------
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-------CSL--------AKDQDSY------  110 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-------~~~--------~~~~~~~------  110 (279)
                      ....+.+|.+.|++++| |++++|++|+.||.|++||+.++........       ...        ....+..      
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            34478899999999999 9999999999999999999987643211100       000        0000000      


Q ss_pred             -------cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672          111 -------EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP  183 (279)
Q Consensus       111 -------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (279)
                             .......+...|.++.|         ++.++++++.|+.|++||  .++....+..+..     .+.++.|+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-----~v~~~~~~~  152 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSF---------QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-----SVWDAKVVS  152 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-----CEEEEEEEE
T ss_pred             eecCCCCcccchhhcccCEEEEEe---------cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-----ceeEEEEcc
Confidence                   01111223344555544         355788888888888888  5566666666655     889999988


Q ss_pred             -CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          184 -TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       184 -~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                       ++..++++ .|+.|++||...      ....+.   ..|...+.+++|+| ++. +++++.||.|++||+++++++..+
T Consensus       153 ~~~~~l~~~~~d~~i~i~d~~~------~~~~~~---~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~  221 (313)
T 3odt_A          153 FSENKFLTASADKTIKLWQNDK------VIKTFS---GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTY  221 (313)
T ss_dssp             TTTTEEEEEETTSCEEEEETTE------EEEEEC---SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCEEEEecCc------eEEEEe---ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhh
Confidence             78888865 999999999442      222221   23788999999999 777 899999999999999999999999


Q ss_pred             eecCCCEEEEEEccCCC
Q 023672          262 HGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       262 ~~~~~~v~~~~~spdg~  278 (279)
                      ..|...|++++|+|+|+
T Consensus       222 ~~~~~~i~~~~~~~~~~  238 (313)
T 3odt_A          222 EGHESFVYCIKLLPNGD  238 (313)
T ss_dssp             ECCSSCEEEEEECTTSC
T ss_pred             hcCCceEEEEEEecCCC
Confidence            99999999999999984

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=4.4e-28  Score=197.97  Aligned_cols=231  Identities=13%  Similarity=0.149  Sum_probs=157.1

Q ss_pred             eeeEecCCCCcc-----cceeeeeeccCCCC------------CceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccc
Q 023672           35 PLIRFDVPPHRT-----YHFYNQFRTSSIPN------------NFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGIS   95 (279)
Q Consensus        35 ~~~~~d~~~~~~-----~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~   95 (279)
                      .+.+||+.+...     ...+.....+.+|.            +.|++++|+|++  .+|++++.|++|++||+.++...
T Consensus        51 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~  130 (447)
T 3dw8_B           51 RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR  130 (447)
T ss_dssp             EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEE
T ss_pred             eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCC
Confidence            678888876652     11222344677898            889999999998  79999999999999999764331


Q ss_pred             cccccccc-------cCCC--C--------------cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEE
Q 023672           96 YDVNACSL-------AKDQ--D--------------SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (279)
Q Consensus        96 ~~~~~~~~-------~~~~--~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (279)
                      ........       ....  -              .....+...|...|.+++|       +|++.+|++| .|+.|++
T Consensus       131 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~s~-~d~~i~i  202 (447)
T 3dw8_B          131 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI-------NSDYETYLSA-DDLRINL  202 (447)
T ss_dssp             EECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE-------CTTSSEEEEE-CSSEEEE
T ss_pred             cceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE-------cCCCCEEEEe-CCCeEEE
Confidence            10000000       0000  0              0000112356778888877       7789999998 7999999


Q ss_pred             EECCC-CeeeEEEecc--CccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC----
Q 023672          153 WDATT-GLLRCTYRAY--DAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG----  223 (279)
Q Consensus       153 ~d~~~-~~~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----  223 (279)
                      ||+++ ++....+...  ....+...|.+++|+|++ .+++++ .|+.|++||++++.........+    .+|..    
T Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~  278 (447)
T 3dw8_B          203 WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF----EEPEDPSNR  278 (447)
T ss_dssp             EETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE----CCC-----C
T ss_pred             EECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe----ccCCCcccc
Confidence            99984 4444432111  111223389999999998 888866 99999999999843211112222    34443    


Q ss_pred             --------ceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEeecCCC---------------EEEEEEccCCCC
Q 023672          224 --------IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGG---------------VTHVSKLSSAYT  279 (279)
Q Consensus       224 --------~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~---------------v~~~~~spdg~~  279 (279)
                              .|.+++|+| ++.+|++++. +.|++||+++ ++++..+.+|...               +..++|+|||++
T Consensus       279 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~  356 (447)
T 3dw8_B          279 SFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV  356 (447)
T ss_dssp             CHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred             ccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence                    899999999 9999999998 9999999997 8888889888632               334999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-27  Score=188.18  Aligned_cols=167  Identities=13%  Similarity=0.069  Sum_probs=127.3

Q ss_pred             cCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           56 SSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ..+|.+.|.+++|+|  ++++|++|+.||+|++||++++....                .....+...+.+++|      
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------------~~~~~~~~~i~~~~~------  178 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI----------------VHSAKSDVEYSSGVL------  178 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE----------------EECCCSSCCCCEEEE------
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE----------------EEecCCCCceEEEEE------
Confidence            346788999999999  99999999999999999998764311                012234446777766      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeee-EEEec-cCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRA-YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~  211 (279)
                       +|++.+|++|+.|+.|++||+++++.. ..+.. |..     .|.+++|+|++.+|+++.++.|++||+++. .....+
T Consensus       179 -~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-----~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~-~~~~~~  251 (343)
T 3lrv_A          179 -HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-----KIKEVKFADNGYWMVVECDQTVVCFDLRKD-VGTLAY  251 (343)
T ss_dssp             -CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-----CEEEEEECTTSSEEEEEESSBEEEEETTSS-TTCBSS
T ss_pred             -CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-----CEEEEEEeCCCCEEEEEeCCeEEEEEcCCC-Ccceee
Confidence             778999999999999999999999877 67766 554     899999999999999775669999999984 222222


Q ss_pred             eecccccCCCCCce--EEEEEccCCCcEEEEEeC-CCcEEEEecCCCe
Q 023672          212 STLKGNKEGQAGIM--SAIAFSPTHTGMLAIGSY-SQTSAIYREDNME  256 (279)
Q Consensus       212 ~~~~~~~~~~~~~v--~~~~~sp~~~~~l~~~~~-dg~i~~wd~~~~~  256 (279)
                      ..+    ..|...+  .+++|+| ++.+|++++. |+.|++|++.+..
T Consensus       252 ~~~----~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          252 PTY----TIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CCC----BC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ccc----ccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccc
Confidence            111    1233333  4699999 8999999888 9999999986543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.9e-28  Score=195.19  Aligned_cols=201  Identities=10%  Similarity=0.108  Sum_probs=142.3

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc----cccccccC---------CCCcccceeeecCCCceEEE
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD----VNACSLAK---------DQDSYEASLVVTEGESVYDF  125 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~  125 (279)
                      -...|.+++|+|||+++|+++.|++|+  |...++....    .....+.+         ........+...+...|.++
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v   91 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC   91 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence            457899999999999999999999998  6544432210    00000000         00010111222335678888


Q ss_pred             EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       126 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      +|       +|+|..||+++.||.|++||..+  .+..+. +...-....+.+++|||+|++|++| .||.|++||+..+
T Consensus        92 aw-------SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           92 KP-------SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EE-------CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             EE-------CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            77       78999999999999999999644  555555 4421112258999999999999966 9999999999873


Q ss_pred             CC---ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE---EEEEe-ecCCCEEEEEEc
Q 023672          205 GR---DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVLH-GQEGGVTHVSKL  274 (279)
Q Consensus       205 ~~---~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~-~~~~~v~~~~~s  274 (279)
                      ..   .+-.+.++.....+|...|.+++|+| ++  +++++.|++|++||+.++..   ..++. +|...|.+++|+
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            21   01123454444467889999999999 77  78888999999999988773   35674 788899999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=4.2e-27  Score=214.16  Aligned_cols=169  Identities=18%  Similarity=0.267  Sum_probs=144.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|.+.|++++|+|++++|++|+.||+|++||+.++....                 ....|...|.+++|       
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-----------------~~~~h~~~v~~~~~-------  665 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-----------------DIKAHEDEVLCCAF-------  665 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE-------
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-----------------EeccCCCCEEEEEE-------
Confidence            577899999999999999999999999999999998764321                 22356778999887       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                      +|++.+|++++.|+.|++||+.+++.+..+..+..     .|.+++|+|+  +.+++++ .|+.|++||++++    ...
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~----~~~  736 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK----ECR  736 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSS----SEE
T ss_pred             ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCc----chh
Confidence            77899999999999999999999999999988776     8999999995  4567765 9999999999984    233


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                      ..+    .+|...|.+++|+| ++.+|++++.||.|++||+++++....+
T Consensus       737 ~~~----~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          737 NTM----FGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             EEE----CCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             hee----cCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccccee
Confidence            333    68899999999999 8999999999999999999888765544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=2e-26  Score=189.25  Aligned_cols=213  Identities=14%  Similarity=0.200  Sum_probs=163.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEc--cCCCeEEEeeCCCeEEEEeCCCCccccccccc------cccCC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWS--PDGSSFLTSSEDKTLRIFSLPENGISYDVNAC------SLAKD  106 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~  106 (279)
                      .+.+||+.++....      .+.+|.+.|.+++|+  +++++|++|+.||+|++||+.++.........      .....
T Consensus       184 ~i~vwd~~~~~~~~------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          184 TVRVWDIKKGCCTH------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             CEEEEETTTTEEEE------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             CEEEEECCCCcEEE------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            56788888776554      677899999999998  47789999999999999999876542211100      00000


Q ss_pred             CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672          107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       107 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                      ...........+...+.++         ++++.++++++.|+.|++||+++++.+..+..+..     .|.+++|+|+++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~---------~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~  323 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTV---------SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-----RIYSTIYDHERK  323 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEE---------EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEETTTT
T ss_pred             CCeEEEEEccCccceEEEE---------cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-----CEEEEEEcCCCC
Confidence            1111122333455556655         44778999999999999999999999999887776     899999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      +++++ .|+.|++||++++    +....+    .+|...|.+++|++   .+|++|+.||.|++||++++....... +.
T Consensus       324 ~l~sg~~dg~i~vwd~~~~----~~~~~~----~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~  391 (464)
T 3v7d_B          324 RCISASMDTTIRIWDLENG----ELMYTL----QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HT  391 (464)
T ss_dssp             EEEEEETTSCEEEEETTTT----EEEEEE----CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CT
T ss_pred             EEEEEeCCCcEEEEECCCC----cEEEEE----eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CC
Confidence            99976 9999999999884    333444    68899999999975   689999999999999999988776665 66


Q ss_pred             CCEEEEEEccCCCC
Q 023672          266 GGVTHVSKLSSAYT  279 (279)
Q Consensus       266 ~~v~~~~~spdg~~  279 (279)
                      ..+..++|+|+|++
T Consensus       392 ~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          392 NLSAITTFYVSDNI  405 (464)
T ss_dssp             TCCCEEEEEECSSE
T ss_pred             CCccEEEEEeCCCE
Confidence            77888999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=8e-27  Score=183.97  Aligned_cols=210  Identities=12%  Similarity=0.182  Sum_probs=147.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+++||+.+.....  .....+.+|.+.|.+++|+|  ++++|++|+.||.|++||+.++.........        ...
T Consensus        34 ~i~iw~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--------~~~  103 (351)
T 3f3f_A           34 HIKVFKLDKDTSNW--ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW--------NKL  103 (351)
T ss_dssp             EEEEEEECSSSCCE--EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE--------EEE
T ss_pred             eEEEEECCCCCCcc--eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc--------cee
Confidence            67888887654321  23336778999999999999  6999999999999999999875431110000        001


Q ss_pred             eeeecCCCceEEEEeeCcccccCCC--CcEEEEecCCCcEEEEECCCCeeeEEEe-------------------------
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPT--SCVFASTTRDHPIHLWDATTGLLRCTYR-------------------------  165 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~d~~~~~~~~~~~-------------------------  165 (279)
                      .....+...|.+++|       +|+  +.+|++++.|+.|++||+++++.+..+.                         
T Consensus       104 ~~~~~~~~~v~~~~~-------~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (351)
T 3f3f_A          104 CTLNDSKGSLYSVKF-------APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWC  176 (351)
T ss_dssp             EEECCCSSCEEEEEE-------CCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEEC
T ss_pred             eeecccCCceeEEEE-------cCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEec
Confidence            123356678999888       556  8899999999999999987654221110                         


Q ss_pred             ------------------------------ccCccccccceeeEEECCCC----CEEEEe-cCCeEEEEEccCCCCceee
Q 023672          166 ------------------------------AYDAVDEITAAFSVAFNPTG----TKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       166 ------------------------------~~~~~~~~~~v~~~~~~~~~----~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                                                    ......+...|.+++|+|++    ++|+++ .|+.|++||++.+......
T Consensus       177 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  256 (351)
T 3f3f_A          177 PSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS  256 (351)
T ss_dssp             CCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----
T ss_pred             cCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc
Confidence                                          00001233489999999998    778866 9999999999863111000


Q ss_pred             --------------------------------------eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          211 --------------------------------------YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       211 --------------------------------------~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                                                            .......+.+|...|++++|+| ++.+|++|+.||.|++||+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          257 EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             ----------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred             CCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEec
Confidence                                                  0011222368899999999999 8999999999999999999


Q ss_pred             CCCeEEEEEe
Q 023672          253 DNMELLYVLH  262 (279)
Q Consensus       253 ~~~~~~~~~~  262 (279)
                      .+++.+..+.
T Consensus       336 ~~~~~~~~~~  345 (351)
T 3f3f_A          336 TYSNEFKCMS  345 (351)
T ss_dssp             CTTSCEEEEE
T ss_pred             CcCcchhhee
Confidence            9886554443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=6.7e-27  Score=198.23  Aligned_cols=205  Identities=12%  Similarity=0.107  Sum_probs=163.4

Q ss_pred             eeeEecCCCC----cccceeeeeeccCCCCCc-eEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672           35 PLIRFDVPPH----RTYHFYNQFRTSSIPNNF-LKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        35 ~~~~~d~~~~----~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      .+.+||+.++    ....      .+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++.......        
T Consensus        40 ~v~v~~~~~~~~~~~~~~------~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--------  105 (615)
T 1pgu_A           40 SAFVRCLDDGDSKVPPVV------QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------  105 (615)
T ss_dssp             EEEEEECCSSCCSSCSEE------EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE--------
T ss_pred             eEEEEECCCCCCccccce------EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc--------
Confidence            5788998876    4443      67899999 99999999  99999999999999999997441100000        


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCC----CcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP  183 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (279)
                       .........+...|.+++|       +|++++|++++.+    +.|.+||  .++....+..+..     .|.+++|+|
T Consensus       106 -~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-----~v~~~~~~~  170 (615)
T 1pgu_A          106 -VNVKSEFQVLAGPISDISW-------DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-----RINACHLKQ  170 (615)
T ss_dssp             -EEEEEEEECCSSCEEEEEE-------CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-----CEEEEEECS
T ss_pred             -ccccchhhcccccEEEEEE-------eCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCc-----cEEEEEECC
Confidence             0001122345678888877       7789999999987    6888888  5667777777665     899999999


Q ss_pred             CCC-EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC---ceEEEEEccCC-CcEEEEEeCCCcEEEEecCCCeE
Q 023672          184 TGT-KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG---IMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       184 ~~~-~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~-~~~l~~~~~dg~i~~wd~~~~~~  257 (279)
                      ++. .++++ .|+.|++||+.+.    +....+    .+|..   .|.+++|+| + +.+|++++.||.|++||++++++
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~----~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPPF----KFSASD----RTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTB----EEEEEE----CSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCE
T ss_pred             CCCcEEEEEeCCCcEEEEeCCCc----ceeeee----cccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCE
Confidence            997 56655 9999999999873    333333    57777   899999999 7 99999999999999999999999


Q ss_pred             EEEE-e---ecCCCEEEEEEccCCC
Q 023672          258 LYVL-H---GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       258 ~~~~-~---~~~~~v~~~~~spdg~  278 (279)
                      +..+ .   .|...|.+++|+ +|+
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~  265 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQ  265 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSS
T ss_pred             eEEecccccccCCceEEEEEc-CCC
Confidence            9998 6   899999999999 875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1e-26  Score=183.33  Aligned_cols=202  Identities=10%  Similarity=0.036  Sum_probs=154.9

Q ss_pred             eeeEecC-CCCcccceeeeeeccCC--CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCC---------Ccccccccccc
Q 023672           35 PLIRFDV-PPHRTYHFYNQFRTSSI--PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE---------NGISYDVNACS  102 (279)
Q Consensus        35 ~~~~~d~-~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~---------~~~~~~~~~~~  102 (279)
                      .+.+||+ .++...       .+.+  |...|.+++|+| +++|++++.|+.|++||+.+         +...       
T Consensus        80 ~i~~wd~~~~~~~~-------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------  144 (342)
T 1yfq_A           80 EILKVDLIGSPSFQ-------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-------  144 (342)
T ss_dssp             CEEEECSSSSSSEE-------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-------
T ss_pred             eEEEEEeccCCceE-------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-------
Confidence            5788888 766542       5677  999999999999 99999999999999999874         2111       


Q ss_pred             ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-Ceee--EEEeccCccccccceeeE
Q 023672          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLR--CTYRAYDAVDEITAAFSV  179 (279)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~--~~~~~~~~~~~~~~v~~~  179 (279)
                                 ....+...+.+++|       ++++  +++++.|+.|++||+++ +...  .....+..     .+.++
T Consensus       145 -----------~~~~~~~~v~~~~~-------~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~i~~i  199 (342)
T 1yfq_A          145 -----------NNTKVKNKIFTMDT-------NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY-----QIRDV  199 (342)
T ss_dssp             -----------SSSSSCCCEEEEEE-------CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS-----CEEEE
T ss_pred             -----------eEEeeCCceEEEEe-------cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCC-----ceeEE
Confidence                       11225678888888       4444  89999999999999998 5432  22223333     78999


Q ss_pred             EECC-CCCEEEEe-cCCeEEEEEccCC-----CCceeeeeeccc--ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          180 AFNP-TGTKIFAG-YNKSVRVFDVHRP-----GRDFEKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       180 ~~~~-~~~~l~~~-~d~~i~~~d~~~~-----~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                      +|+| ++++++++ .|+.|++||++..     ......+.....  ...+|...|.+++|+| ++.+|++|+.||.|++|
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEE
Confidence            9999 99999966 9999999999874     122222211100  0013455999999999 89999999999999999


Q ss_pred             ecCCCeEEEEEeec-CCCEEEEEEccCCCC
Q 023672          251 REDNMELLYVLHGQ-EGGVTHVSKLSSAYT  279 (279)
Q Consensus       251 d~~~~~~~~~~~~~-~~~v~~~~~spdg~~  279 (279)
                      |+.+++++..+.+| ..+|.+++  |||++
T Consensus       279 d~~~~~~~~~~~~~h~~~v~~~~--~~~~~  306 (342)
T 1yfq_A          279 NLQTRKKIKNFAKFNEDSVVKIA--CSDNI  306 (342)
T ss_dssp             ETTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred             cCccHhHhhhhhcccCCCceEec--CCCCe
Confidence            99999999999998 99999999  88863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=9.4e-27  Score=178.52  Aligned_cols=200  Identities=14%  Similarity=0.015  Sum_probs=129.2

Q ss_pred             CCceEEEEEccC----CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-----------ecCCCceEE
Q 023672           60 NNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-----------VTEGESVYD  124 (279)
Q Consensus        60 ~~~v~~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~  124 (279)
                      .+.|+.++|+||    ++.+++++.+  +++|++.+++.....     ...++..+....           ..++..+..
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss-----~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~  183 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS-----GTLSDQQVEVMTFAEDGGGKENQFLMPPEETI  183 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE-----SSSTTCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred             ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec-----ccCCCCcEEEEEECCCCceeeeeccCCCceee
Confidence            347888888998    8888887743  667777654432110     001111121122           233334444


Q ss_pred             EEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE------------EEe-
Q 023672          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI------------FAG-  191 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l------------~~~-  191 (279)
                      ++|+|-    .-++..|++++.|++|+|||+.+++.+.++..+..  ....+.+++|+|+|.++            ++| 
T Consensus       184 l~fs~~----~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs  257 (356)
T 2w18_A          184 LTFAEV----QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--YQASVCHKAYSEMGLLFIVLSHPCAKESESLRS  257 (356)
T ss_dssp             EEEEEE----ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------
T ss_pred             EEeecc----CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc--ceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence            444221    12678999999999999999999999999975432  11267788999999876            344 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccc-cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEE-
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGN-KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-  269 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-  269 (279)
                      .|++|++||..++ +...   .+... ..+|...+.+..+   ++.++++|+.|++|+|||+.+++++.++.+|...+. 
T Consensus       258 ~D~tIklWd~~tg-k~l~---v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          258 PVFQLIVINPKTT-LSVG---VMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             CCEEEEEEETTTT-EEEE---EEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred             CCcEEEEEECCCC-EEEE---EEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence            7899999999874 2221   11100 1466555444433   467899999999999999999999999999887655 


Q ss_pred             EEEEccCCCC
Q 023672          270 HVSKLSSAYT  279 (279)
Q Consensus       270 ~~~~spdg~~  279 (279)
                      .++|||||++
T Consensus       331 ~vafSPDG~~  340 (356)
T 2w18_A          331 FVKWSGTDSH  340 (356)
T ss_dssp             EEEECSSSSE
T ss_pred             EEEECCCCCE
Confidence            6899999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=5.3e-26  Score=185.24  Aligned_cols=188  Identities=17%  Similarity=0.241  Sum_probs=153.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||..+++...      .+.+|.+.|.+++|  ++++|++|+.||+|++||+.++....                 .
T Consensus       154 ~i~iwd~~~~~~~~------~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-----------------~  208 (435)
T 1p22_A          154 TIKIWDKNTLECKR------ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN-----------------T  208 (435)
T ss_dssp             CEEEEESSSCCEEE------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE-----------------E
T ss_pred             eEEEEeCCCCeEEE------EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE-----------------E
Confidence            46788887776654      67789999999999  78899999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeee---EEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR---CTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      ...+...|.++.|+         +..+++|+.|+.|++||++++...   ..+..+..     .|.+++|  ++++++++
T Consensus       209 ~~~h~~~v~~l~~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~s~  272 (435)
T 1p22_A          209 LIHHCEAVLHLRFN---------NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-----AVNVVDF--DDKYIVSA  272 (435)
T ss_dssp             ECCCCSCEEEEECC---------TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-----CEEEEEE--ETTEEEEE
T ss_pred             EcCCCCcEEEEEEc---------CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-----cEEEEEe--CCCEEEEE
Confidence            23466788888872         449999999999999999987655   44555554     8889998  67788866


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEE
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~  270 (279)
                       .|+.|++||++++    +....+    .+|...|.+++|++   .++++|+.||.|++||+++++++..+.+|...|.+
T Consensus       273 ~~dg~i~vwd~~~~----~~~~~~----~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  341 (435)
T 1p22_A          273 SGDRTIKVWNTSTC----EFVRTL----NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC  341 (435)
T ss_dssp             ETTSEEEEEETTTC----CEEEEE----ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             eCCCeEEEEECCcC----cEEEEE----cCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE
Confidence             9999999999984    233333    57888999999854   69999999999999999999999999999999999


Q ss_pred             EEEc
Q 023672          271 VSKL  274 (279)
Q Consensus       271 ~~~s  274 (279)
                      ++|.
T Consensus       342 ~~~~  345 (435)
T 1p22_A          342 IRFD  345 (435)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9983

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-26  Score=186.32  Aligned_cols=210  Identities=10%  Similarity=0.051  Sum_probs=158.5

Q ss_pred             eeeEecCC--CCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVP--PHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||+.  ++.....+..    ..|...|.+++|+|++++|++|+.||.|++|++.++.....             ..
T Consensus       126 ~v~iwd~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~-------------~~  188 (450)
T 2vdu_B          126 SLLVFDVDKTSKNVLKLRKR----FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF-------------TQ  188 (450)
T ss_dssp             EEEEEEECSSSSSCEEEEEE----EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-------------CC
T ss_pred             eEEEEECcCCCCceeeeeec----ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-------------cc
Confidence            56778877  6655442211    25778999999999999999999999999999986543210             00


Q ss_pred             eeeecCCCceEEEEeeCcccccCCC---CcEEEEecCCCcEEEEECCCCeeeEEE-eccCccccccceeeEEECCCCCEE
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPT---SCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                      .....|...|.+++|       +|+   +.+|++++.|+.|++||+++++.+..+ ..+..     .|.+++|+ ++++|
T Consensus       189 ~~~~~h~~~v~~~~~-------sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-----~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          189 EPILGHVSMLTDVHL-------IKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-----FVSSICCG-KDYLL  255 (450)
T ss_dssp             CCSEECSSCEEEEEE-------EECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-----CEEEEEEC-STTEE
T ss_pred             eeeecccCceEEEEE-------cCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-----ceEEEEEC-CCCEE
Confidence            022346678999988       556   889999999999999999998877764 35554     89999999 99999


Q ss_pred             EEe-cCCeEEEEEccCCCCceeeeeecc------------------cccCCCCCceEEEEEccCCCcEEEEEe-CCCcEE
Q 023672          189 FAG-YNKSVRVFDVHRPGRDFEKYSTLK------------------GNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSA  248 (279)
Q Consensus       189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~  248 (279)
                      +++ .|+.|++||++++ +....+....                  .........|.+++|+| ++.+|++++ .|+.|+
T Consensus       256 ~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEE
T ss_pred             EEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEE
Confidence            966 9999999999984 3322221100                  00012345789999999 888888888 899999


Q ss_pred             EEec--CCC---eEEEEEeecCCCEEEEEEccCC
Q 023672          249 IYRE--DNM---ELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       249 ~wd~--~~~---~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      +||+  .++   +.+..+..| +.|.+++|+|++
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred             EEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence            9999  565   677888887 889999999965

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=5.7e-26  Score=185.58  Aligned_cols=212  Identities=16%  Similarity=0.236  Sum_probs=150.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc-------------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------------  101 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------  101 (279)
                      .+.+||+.+++...      .+.+|...|.+++|+  ++.|++|+.||+|++||+.++.........             
T Consensus       180 ~i~vwd~~~~~~~~------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~  251 (445)
T 2ovr_B          180 TLKVWNAETGECIH------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR  251 (445)
T ss_dssp             CEEEEETTTTEEEE------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC
T ss_pred             eEEEEECCcCcEEE------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCE
Confidence            57777777777777      455677777777775  456777777777777777766543221100             


Q ss_pred             cccCCCCcccce----------eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc
Q 023672          102 SLAKDQDSYEAS----------LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD  171 (279)
Q Consensus       102 ~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  171 (279)
                      ......+..+..          ....+...|.++.|         ++.++++++.|+.|++||+++++.+..+..+..  
T Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--  320 (445)
T 2ovr_B          252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--  320 (445)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--
Confidence            000001111111          11224445666655         678999999999999999999999988887765  


Q ss_pred             cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                         .+.++.++  +++++++ .|+.|++||++++ ..   ...+.. ...|...|.+++|++   .+|++|+.||.|++|
T Consensus       321 ---~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~---~~~~~~-~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          321 ---LTSGMELK--DNILVSGNADSTVKIWDIKTG-QC---LQTLQG-PNKHQSAVTCLQFNK---NFVITSSDDGTVKLW  387 (445)
T ss_dssp             ---CEEEEEEE--TTEEEEEETTSCEEEEETTTC-CE---EEEECS-TTSCSSCEEEEEECS---SEEEEEETTSEEEEE
T ss_pred             ---cEEEEEEe--CCEEEEEeCCCeEEEEECCCC-cE---EEEEcc-CCCCCCCEEEEEECC---CEEEEEeCCCeEEEE
Confidence               67777764  5677766 9999999999873 22   223311 135788999999965   689999999999999


Q ss_pred             ecCCCeEEEEE-----eecCCCEEEEEEccCCC
Q 023672          251 REDNMELLYVL-----HGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       251 d~~~~~~~~~~-----~~~~~~v~~~~~spdg~  278 (279)
                      |+.+++.+..+     ..|.+.|++++|+|+|.
T Consensus       388 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             ECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence            99999999888     46788999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.7e-26  Score=201.55  Aligned_cols=201  Identities=7%  Similarity=0.119  Sum_probs=150.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++|+........       ...|...|.+++|+| +++|++++.|++|+|||+.+++...                  
T Consensus        40 ~I~lw~~~~~~~~~-------~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~------------------   93 (902)
T 2oaj_A           40 EVHIYGQQQVEVVI-------KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT------------------   93 (902)
T ss_dssp             EEEEECSTTCEEEE-------ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE------------------
T ss_pred             EEEEEeCCCcEEEE-------EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE------------------
Confidence            67888877655432       234788999999999 8899999999999999998764321                  


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec-------cCccccccceeeEEECCCC-C
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-------YDAVDEITAAFSVAFNPTG-T  186 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~-~  186 (279)
                      ...+...|.+++|       +|++.+|++|+.||.|++||+++++.. .+..       .....+...|.+++|+|++ .
T Consensus        94 ~~~~~~~V~~v~~-------sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           94 TVFVPGKITSIDT-------DASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             EEECSSCEEEEEC-------CTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             EEcCCCCEEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCC
Confidence            1124457888876       788999999999999999999988753 2221       1112233489999999974 5


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccc--------------cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN--------------KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      .+++| .|+.| +||++++ +   ....+...              ...|...|.+++|+| ++.+|++|+.||.|++||
T Consensus       166 ~l~~g~~dg~v-lWd~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVEN-E---IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             EEEEECSSCEE-EEETTTT-E---EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred             EEEEEeCCCcE-EEECCCC-c---eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEE
Confidence            66666 99999 9999973 2   22222111              134567899999999 899999999999999999


Q ss_pred             cCCCeEEEE--E---ee-------------cCCCEEEEEEcc
Q 023672          252 EDNMELLYV--L---HG-------------QEGGVTHVSKLS  275 (279)
Q Consensus       252 ~~~~~~~~~--~---~~-------------~~~~v~~~~~sp  275 (279)
                      +++++++..  +   ..             |..+|++++|+|
T Consensus       240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred             CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence            999988754  2   11             245799999964

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=2.2e-26  Score=181.47  Aligned_cols=189  Identities=12%  Similarity=0.090  Sum_probs=147.4

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ....+|.+.|++++|+|++++|++++.||.|++|++.++...              ........+...|.+++|      
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------~~~~~~~~~~~~v~~~~~------   64 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------VDLLQSLRYKHPLLCCNF------   64 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------EEEEEEEECSSCEEEEEE------
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------ccceeeeecCCceEEEEE------
Confidence            356789999999999999999999999999999999865310              001133467778999988      


Q ss_pred             cCCCCc-EEEEecCCCcEEEEEC-CCCeeeEEEec--cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC-c
Q 023672          134 SDPTSC-VFASTTRDHPIHLWDA-TTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR-D  207 (279)
Q Consensus       134 ~~~~~~-~l~s~~~d~~i~i~d~-~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~-~  207 (279)
                       +|++. +|++++.|+.|++||+ .+++. ..+..  +..     .|.+++|+| +..++++ .|+.|++||+++... .
T Consensus        65 -~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~-----~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~  136 (342)
T 1yfq_A           65 -IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANL-----GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             -EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCS-----CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             -CCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCC-----ceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence             56789 9999999999999999 87754 45554  544     899999999 8888865 999999999975110 0


Q ss_pred             ----eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-Ce--EEEEEeecCCCEEEEEEcc-CCC
Q 023672          208 ----FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-ME--LLYVLHGQEGGVTHVSKLS-SAY  278 (279)
Q Consensus       208 ----~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~--~~~~~~~~~~~v~~~~~sp-dg~  278 (279)
                          .+....+     .|...+.+++|+| ++  +++++.|+.|++||+++ +.  .......|...|.+++|+| +|+
T Consensus       137 ~~~~~~~~~~~-----~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  207 (342)
T 1yfq_A          137 IAVKNLNSNNT-----KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             EEEEESCSSSS-----SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred             ccccCCeeeEE-----eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC
Confidence                0111122     3778999999999 65  89999999999999998 54  3334556788999999999 875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=1.3e-25  Score=182.08  Aligned_cols=189  Identities=17%  Similarity=0.316  Sum_probs=138.6

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|...+.++.|+|+++++++++.|+.+++|+..++.....             .......+...|..+.|+|.    
T Consensus       225 ~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-------------~~~~~~~~~~~V~~~~~~p~----  287 (420)
T 4gga_A          225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-------------PLQTFTQHQGAVKAVAWCPW----  287 (420)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-------------CSEEECCCSSCEEEEEECTT----
T ss_pred             EecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-------------eeeeecccCCceeeeeeCCC----
Confidence            5678999999999999999999999999999999986542111             11133456678999988654    


Q ss_pred             CCCCcEEEE--ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE--e-cCCeEEEEEccCCCCcee
Q 023672          135 DPTSCVFAS--TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--G-YNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~-~d~~i~~~d~~~~~~~~~  209 (279)
                        +...+++  |+.|++|++||+.+++....+..+.      .+.++.|+|+++.+++  | .|+.|+|||+.++    +
T Consensus       288 --~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~------~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~----~  355 (420)
T 4gga_A          288 --QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM----A  355 (420)
T ss_dssp             --CTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC----C
T ss_pred             --cccEEEEEeecCCCEEEEEeCCccccceeecccc------ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC----c
Confidence              3345554  5689999999999999988887665      7889999999988873  4 6899999999884    3


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      .+..+    .+|.+.|.+++|+| ++.+|++|+.|++|+|||+.+..+......+...+....|..+|
T Consensus       356 ~v~~l----~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~~~g  418 (420)
T 4gga_A          356 KVAEL----KGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG  418 (420)
T ss_dssp             EEEEE----CCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCSSCC-------------------
T ss_pred             EEEEE----cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccCCCC
Confidence            33444    68999999999999 89999999999999999998877766666555555444554443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=4.4e-26  Score=174.81  Aligned_cols=164  Identities=9%  Similarity=0.003  Sum_probs=110.8

Q ss_pred             ccCCCCCceEEEEEcc---CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecC--CCceEEEEeeC
Q 023672           55 TSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE--GESVYDFCWFP  129 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~---~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~  129 (279)
                      .+.+|...+..++|+|   ++.+|++|+.|++|+|||+.+++.....                ..++  ...+..++|+ 
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL----------------~g~~~~v~~v~~vafS-  235 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM----------------HIDDSYQASVCHKAYS-  235 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE----------------ECCC---CCCEEEEEE-
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE----------------cCCCcceeeeEEEEEC-
Confidence            4556777788888888   6688999999999999999987653321                1111  1244555554 


Q ss_pred             cccccCCCCcE------------EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeE
Q 023672          130 HMSASDPTSCV------------FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV  196 (279)
Q Consensus       130 ~~~~~~~~~~~------------l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i  196 (279)
                            |++.+            +++|+.|++|++||..+++.+..+......++...+.+..+  ++.+++++ .|++|
T Consensus       236 ------pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTI  307 (356)
T 2w18_A          236 ------EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTI  307 (356)
T ss_dssp             ------ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCE
T ss_pred             ------CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcE
Confidence                  44544            47788999999999999988776532111011112333333  37788876 89999


Q ss_pred             EEEEccCCCCceeeeeecccccCCCCCceE-EEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       197 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      +|||+.++    +...++    .+|...+. +++|+| ++.+|++|+.|++|+|||+
T Consensus       308 kIWDl~tG----k~l~tL----~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLG----QCTALL----PPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTTC----SEEEEE----CCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCC----cEEEEe----cCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence            99999984    344444    57776555 689999 9999999999999999995

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=1.4e-25  Score=182.75  Aligned_cols=190  Identities=15%  Similarity=0.242  Sum_probs=155.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.+++...      .+.+|.+.|.+++|++  ..|++|+.||.|++||+.++....              ....
T Consensus       194 ~i~vwd~~~~~~~~------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~--------------~~~~  251 (435)
T 1p22_A          194 TVRVWDVNTGEMLN------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDIT--------------LRRV  251 (435)
T ss_dssp             CEEEEESSSCCEEE------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCE--------------EEEE
T ss_pred             eEEEEECCCCcEEE------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCce--------------eeeE
Confidence            46778887776654      6778999999999974  589999999999999998653211              0113


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...|.++.|         ++.++++|+.|+.|++||+++++.+..+..+..     .|.++.|+  +.++++| .|
T Consensus       252 ~~~~~~~v~~~~~---------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~g~~d  315 (435)
T 1p22_A          252 LVGHRAAVNVVDF---------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-----GIACLQYR--DRLVVSGSSD  315 (435)
T ss_dssp             ECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEEE--TTEEEEEETT
T ss_pred             ecCCCCcEEEEEe---------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----cEEEEEeC--CCEEEEEeCC
Confidence            4456678888877         567999999999999999999999999887775     88899884  5677765 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe---------EEEEEeec
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---------LLYVLHGQ  264 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~~~  264 (279)
                      +.|++||++++    .....+    .+|...|.+++|   ++.+|++|+.||.|++||++++.         ++..+.+|
T Consensus       316 g~i~iwd~~~~----~~~~~~----~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h  384 (435)
T 1p22_A          316 NTIRLWDIECG----ACLRVL----EGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH  384 (435)
T ss_dssp             SCEEEEETTTC----CEEEEE----CCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred             CeEEEEECCCC----CEEEEE----eCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence            99999999984    333344    678899999998   45789999999999999998776         88899999


Q ss_pred             CCCEEEEEE
Q 023672          265 EGGVTHVSK  273 (279)
Q Consensus       265 ~~~v~~~~~  273 (279)
                      .+.|.+++|
T Consensus       385 ~~~v~~l~~  393 (435)
T 1p22_A          385 SGRVFRLQF  393 (435)
T ss_dssp             SSCCCCEEE
T ss_pred             CCCeEEEEe
Confidence            999999999

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=6.5e-25  Score=179.33  Aligned_cols=189  Identities=16%  Similarity=0.222  Sum_probs=157.4

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.+++...      .+.+|.+.|.+++|+  +++|++|+.||+|++||+.++....                 .
T Consensus       140 ~i~vwd~~~~~~~~------~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-----------------~  194 (445)
T 2ovr_B          140 TLKVWSAVTGKCLR------TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-----------------T  194 (445)
T ss_dssp             CEEEEETTTCCEEE------ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE-----------------E
T ss_pred             cEEEEECCCCcEEE------EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE-----------------E
Confidence            56788888777654      678999999999998  5699999999999999998764321                 2


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...|...|.++.|         ++..+++|+.|+.|++||+++++.+..+..+..     .|.+++|  ++.+++++ .|
T Consensus       195 ~~~h~~~v~~~~~---------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~d  258 (445)
T 2ovr_B          195 LYGHTSTVRCMHL---------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYD  258 (445)
T ss_dssp             ECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETT
T ss_pred             ECCCCCcEEEEEe---------cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCC
Confidence            2346678888887         345899999999999999999999988887776     8999999  66777765 99


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                      +.|++||++++    .....+    .+|...|.+++|   ++.++++|+.||.|++||+++++++..+.+|...+.++.+
T Consensus       259 g~i~iwd~~~~----~~~~~~----~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          259 FMVKVWDPETE----TCLHTL----QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             SCEEEEEGGGT----EEEEEE----CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred             CEEEEEECCCC----cEeEEe----cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence            99999999874    333344    578889999999   4578999999999999999999999999999999998887


Q ss_pred             cc
Q 023672          274 LS  275 (279)
Q Consensus       274 sp  275 (279)
                      ++
T Consensus       328 ~~  329 (445)
T 2ovr_B          328 KD  329 (445)
T ss_dssp             ET
T ss_pred             eC
Confidence            54

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=9.7e-26  Score=191.09  Aligned_cols=187  Identities=11%  Similarity=0.134  Sum_probs=151.9

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCc-eEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES-VYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  133 (279)
                      ....|.+.|.+++|+|++++|++++ ++.|.|||+.++....             ........|... |.+++|      
T Consensus        13 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-------------~~~~~~~~h~~~~v~~~~~------   72 (615)
T 1pgu_A           13 QPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-------------PPVVQFTGHGSSVVTTVKF------   72 (615)
T ss_dssp             CCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-------------CSEEEECTTTTSCEEEEEE------
T ss_pred             CCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-------------ccceEEecCCCceEEEEEE------
Confidence            3456889999999999999999998 8899999998651000             001133456677 999987      


Q ss_pred             cCC--CCcEEEEecCCCcEEEEECCCC--------eeeEEEeccCccccccceeeEEECCCCCEEEEe-cC----CeEEE
Q 023672          134 SDP--TSCVFASTTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRV  198 (279)
Q Consensus       134 ~~~--~~~~l~s~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~~  198 (279)
                       +|  ++++|++++.|+.|++||+.++        +....+..+..     .|.+++|+|++++++++ .+    +.|++
T Consensus        73 -sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~v~~  146 (615)
T 1pgu_A           73 -SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFIS  146 (615)
T ss_dssp             -CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             -CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence             77  8999999999999999999755        55666665554     89999999999999965 55    68888


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCCeEEEEEeecCC---CEEEEEEc
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELLYVLHGQEG---GVTHVSKL  274 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s  274 (279)
                      ||..      .....+    .+|...|.+++|+| ++. +|++++.|+.|++||+.+++++..+.+|..   .|.+++|+
T Consensus       147 ~d~~------~~~~~~----~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          147 WDSG------NSLGEV----SGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             TTTC------CEEEEC----CSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             EECC------Ccceee----ecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence            8832      222333    68899999999999 665 899999999999999999999999999999   99999999


Q ss_pred             cC-CC
Q 023672          275 SS-AY  278 (279)
Q Consensus       275 pd-g~  278 (279)
                      |+ |+
T Consensus       216 ~~~~~  220 (615)
T 1pgu_A          216 PDSGE  220 (615)
T ss_dssp             STTCC
T ss_pred             CCCCC
Confidence            99 76

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=2.4e-26  Score=184.76  Aligned_cols=204  Identities=14%  Similarity=0.043  Sum_probs=128.1

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc-CC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS-DP  136 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~  136 (279)
                      .|...+....+.+++.+|++|+.|++|+|||+.++.......            .....+|.+.|.+++|+|..... ..
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~------------~~~~~gH~~~v~~v~~~p~~~~~~~~  154 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV------------LGGKSGHHNFVNDIDIADVYSADNRL  154 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE------------ECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee------------ecccCCCCCceEEEEEccccccccCC
Confidence            344445555556677889999999999999998764321100            00234577899999998753322 33


Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-EEEEe-cCCeEEEEEccCCCCceeeee--
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYS--  212 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~~~d~~~~~~~~~~~~--  212 (279)
                      ++++|++|+.|++|+|||++++.....+..+..     .+.+++|+|++. +|+++ .|+.|++||++++........  
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~  229 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE  229 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC
Confidence            789999999999999999998887777766665     899999999875 66666 999999999987432211100  


Q ss_pred             ---------------ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          213 ---------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       213 ---------------~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                                     .......+|...+.++.|++.++..|++++.|+.+++||+.+++....+..|...+..+.++|++
T Consensus       230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             -CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred             CcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence                           00112246788899999973389999999999999999999998888888888888887777765


Q ss_pred             C
Q 023672          278 Y  278 (279)
Q Consensus       278 ~  278 (279)
                      +
T Consensus       310 ~  310 (393)
T 4gq1_A          310 Q  310 (393)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=4.9e-24  Score=171.16  Aligned_cols=196  Identities=15%  Similarity=0.211  Sum_probs=150.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+++...      .+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++...                 
T Consensus        13 ~v~v~d~~~~~~~~------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~-----------------   68 (391)
T 1l0q_A           13 NISVIDVTSNKVTA------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-----------------   68 (391)
T ss_dssp             EEEEEETTTTEEEE------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-----------------
T ss_pred             EEEEEECCCCeEEE------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE-----------------
Confidence            57889998887665      344454 48999999999977 677789999999998764321                 


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEE-EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  191 (279)
                       .......+..++|       +|++++|+ +++.++.|++||+.+++.+..+..+.      .+.+++|+|+++.++ ++
T Consensus        69 -~~~~~~~v~~~~~-------spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           69 -TVPAGSSPQGVAV-------SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             -EEECSSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEE
T ss_pred             -EEECCCCccceEE-------CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEe
Confidence             1222337777766       77888775 55677999999999999888877554      678999999999874 66


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecCCCeEEEEEeecCCCEE
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDNMELLYVLHGQEGGVT  269 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  269 (279)
                       .++.|++||+.++    +....+    .. ...+.+++|+| ++..| ++++.++.|++||+++++.+..+. +...+.
T Consensus       135 ~~~~~v~~~d~~~~----~~~~~~----~~-~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~  203 (391)
T 1l0q_A          135 NGDKTVSVINTVTK----AVINTV----SV-GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPS  203 (391)
T ss_dssp             TTTTEEEEEETTTT----EEEEEE----EC-CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEE
T ss_pred             CCCCEEEEEECCCC----cEEEEE----ec-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCcc
Confidence             7999999999874    222233    22 24578999999 66655 778889999999999999887776 556889


Q ss_pred             EEEEccCCCC
Q 023672          270 HVSKLSSAYT  279 (279)
Q Consensus       270 ~~~~spdg~~  279 (279)
                      +++|+|+|++
T Consensus       204 ~~~~~~~g~~  213 (391)
T 1l0q_A          204 GIAVNPEGTK  213 (391)
T ss_dssp             EEEECTTSSE
T ss_pred             ceEECCCCCE
Confidence            9999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1e-23  Score=169.36  Aligned_cols=196  Identities=17%  Similarity=0.217  Sum_probs=152.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+++...      .+..| ..|.+++|+|++++|+ +++.|+.|++||+.+++...                 
T Consensus        55 ~i~v~d~~~~~~~~------~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~-----------------  110 (391)
T 1l0q_A           55 DVSIIDTATNNVIA------TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-----------------  110 (391)
T ss_dssp             EEEEEETTTTEEEE------EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----------------
T ss_pred             eEEEEECCCCeEEE------EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE-----------------
Confidence            57889988877654      23333 3899999999999875 55567999999998764321                 


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  191 (279)
                       .......+..++|       +|+++.+ ++++.++.|++||+.+++.+..+..+.      .+.+++|+|+++.++ ++
T Consensus       111 -~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          111 -TVKTGKSPLGLAL-------SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------SPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             -EEECSSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------SEEEEEECTTSSEEEEEE
T ss_pred             -EEeCCCCcceEEE-------CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------CcceEEECCCCCEEEEEe
Confidence             1223345666766       7788877 788889999999999999888887654      568999999998885 55


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe---CCCcEEEEecCCCeEEEEEeecCCC
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMELLYVLHGQEGG  267 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~  267 (279)
                       .++.|++||++++    +....+     .+...+.+++|+| ++.+|++++   .++.|++||+.+++++..+..|. .
T Consensus       177 ~~~~~v~~~d~~~~----~~~~~~-----~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~  245 (391)
T 1l0q_A          177 FDSMSISVIDTVTN----SVIDTV-----KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D  245 (391)
T ss_dssp             TTTTEEEEEETTTT----EEEEEE-----ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred             CCCCEEEEEECCCC----eEEEEE-----ecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence             8899999999874    222222     2345789999999 788888777   68999999999999998888765 5


Q ss_pred             EEEEEEccCCCC
Q 023672          268 VTHVSKLSSAYT  279 (279)
Q Consensus       268 v~~~~~spdg~~  279 (279)
                      +.+++|+|||++
T Consensus       246 ~~~~~~s~dg~~  257 (391)
T 1l0q_A          246 PAGIAVTPDGKK  257 (391)
T ss_dssp             EEEEEECTTSSE
T ss_pred             ccEEEEccCCCE
Confidence            799999999963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=4.7e-24  Score=173.56  Aligned_cols=202  Identities=10%  Similarity=0.128  Sum_probs=156.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.+++...... .....+|.+.|.+++|+|+++++++++.|+.|++||+.++....                 .
T Consensus       145 ~i~~~d~~~g~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-----------------~  206 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSP-PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-----------------T  206 (433)
T ss_dssp             SEEEEETTTCCEEEECC-CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE-----------------E
T ss_pred             eEEEEECCCCeEeeecC-cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE-----------------E
Confidence            37788888777653211 11456899999999999999999999999999999998654321                 1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      ...+...+..++|       +|++..+ ++++.|+.|++||+++++.+..+..+.      .+.+++|+|+++.++++ .
T Consensus       207 ~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          207 VDLTGKWSKILLY-------DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG------LPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EECSSSSEEEEEE-------ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS------EEEEEEECTTSSEEEEEEE
T ss_pred             EcCCCCCeeEEEE-------cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC------CceEEEEcCCCCEEEEEEC
Confidence            2245567777877       6677777 555689999999999998877776543      68899999999888854 2


Q ss_pred             --------CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC-cEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          193 --------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT-GMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       193 --------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                              |+.|++||++++    +....+     .|...+.+++|+| ++ .++++++.|+.|++||+.+++.+..+. 
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~----~~~~~~-----~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-  342 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKE----KLIDTI-----GPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSIP-  342 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTT----EEEEEE-----EEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred             CCCccccCCCeEEEEECCCC----cEEeec-----cCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEec-
Confidence                    789999999873    222222     3345788999999 66 566778999999999999999888877 


Q ss_pred             cCCCEEEEEEccCCC
Q 023672          264 QEGGVTHVSKLSSAY  278 (279)
Q Consensus       264 ~~~~v~~~~~spdg~  278 (279)
                      +...+.+++|+|||+
T Consensus       343 ~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          343 VFDKPNTIALSPDGK  357 (433)
T ss_dssp             CSSSEEEEEECTTSS
T ss_pred             CCCCCCeEEEcCCCC
Confidence            677899999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=3.8e-24  Score=169.71  Aligned_cols=179  Identities=12%  Similarity=0.078  Sum_probs=125.1

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      +.+|+..+......        .+...+..+++.++++.+ ++++.|++|+|||+.++.......               
T Consensus        42 ~~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---------------   98 (355)
T 3vu4_A           42 FEIYNVHPVAHIMS--------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---------------   98 (355)
T ss_dssp             EEEEEETTEEEEEE--------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---------------
T ss_pred             EEEEecCCcceeee--------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---------------
Confidence            45777665544321        111247888999988877 568888999999998875432211               


Q ss_pred             eecCCCceEEEEeeCc------------------------------ccccCCCCcEEEE--ecCCCcEEEEECCCCe---
Q 023672          115 VVTEGESVYDFCWFPH------------------------------MSASDPTSCVFAS--TTRDHPIHLWDATTGL---  159 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~------------------------------~~~~~~~~~~l~s--~~~d~~i~i~d~~~~~---  159 (279)
                         +...|.++.+++.                              ..++++  .++++  |+.||.|++||+.+++   
T Consensus        99 ---~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~  173 (355)
T 3vu4_A           99 ---VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSAT  173 (355)
T ss_dssp             ---CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC-----
T ss_pred             ---CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccc
Confidence               1112222222221                              112233  34554  6889999999999865   


Q ss_pred             -------------eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCe-EEEEEccCCCCceeeeeecccccCC-CCC
Q 023672          160 -------------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKS-VRVFDVHRPGRDFEKYSTLKGNKEG-QAG  223 (279)
Q Consensus       160 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~-~~~  223 (279)
                                   .+..+..|..     .|.+++|+|++++|+++ .|++ |++||++++    +....+.   .+ |..
T Consensus       174 ~~~~~~~~~~~~p~~~~~~~h~~-----~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~----~~~~~~~---~g~h~~  241 (355)
T 3vu4_A          174 TQDQGVQQKAILGKGVLIKAHTN-----PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG----VLVREFR---RGLDRA  241 (355)
T ss_dssp             -------------CCEEECCCSS-----CEEEEEECTTSSEEEEEETTCSEEEEEETTTC----CEEEEEE---CTTCCS
T ss_pred             cccccccccccCcccEEEEccCC-----ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEE---cCCCCC
Confidence                         1566666665     89999999999999966 9998 999999984    2333331   14 889


Q ss_pred             ceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      .|.+++|+| ++.+|++++.|++|++||++.+
T Consensus       242 ~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          242 DVVDMKWST-DGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CEEEEEECT-TSCEEEEEETTCEEEEEESSCC
T ss_pred             cEEEEEECC-CCCEEEEEECCCEEEEEEccCC
Confidence            999999999 9999999999999999999765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=1.1e-23  Score=164.18  Aligned_cols=170  Identities=16%  Similarity=0.327  Sum_probs=133.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|...+.++.|++++++|++++.||+|++||+.+++.....             ......+...|..+.+.|.    
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~----  207 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-------------LQTFTQHQGAVKAVAWCPW----  207 (318)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC-------------SEEECCCCSCEEEEEECTT----
T ss_pred             EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc-------------eeeecccCCceEEEEecCC----
Confidence            56789999999999999999999999999999999876432111             1123345567888887553    


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEEEEccCCCCceeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                      +++...+++++.++.|++||..............      .+..+.|+|++..++  +| .|+.|++||++++    +.+
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~----~~~  277 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM----AKV  277 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTCCEEEEEECSS------CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC----CEE
T ss_pred             CCcEEEEEecCCCCEEEEEeccccccccccccee------eeeeeeecccccceEEEEEcCCCEEEEEECCCC----cEE
Confidence            2222244677889999999999888766655444      788999999998776  34 7899999999984    333


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      ..+    .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+..
T Consensus       278 ~~l----~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          278 AEL----KGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEE----CCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEE----cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence            444    68999999999999 89999999999999999997654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=5.9e-23  Score=167.03  Aligned_cols=197  Identities=9%  Similarity=0.029  Sum_probs=151.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||+.+++...      .+..|...+.+++|+|++++++ +++.|+.|++||+.++....                 
T Consensus       192 ~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-----------------  248 (433)
T 3bws_A          192 AVHVFDLKTLAYKA------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-----------------  248 (433)
T ss_dssp             EEEEEETTTCCEEE------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------------
T ss_pred             EEEEEECCCceEEE------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-----------------
Confidence            57788988776654      4557888999999999999885 55579999999998654321                 


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEec--------CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTT--------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                       .......+..++|       +|+++.+++++        .|+.|++||+.+++....+....      .+.+++|+|++
T Consensus       249 -~~~~~~~~~~~~~-------~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g  314 (433)
T 3bws_A          249 -KTDKIGLPRGLLL-------SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTE  314 (433)
T ss_dssp             -ECCCCSEEEEEEE-------CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE------CEEEEEECSST
T ss_pred             -EecCCCCceEEEE-------cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC------CcceEEECCCC
Confidence             1122234666655       78898888887        58899999999998776664322      67899999999


Q ss_pred             CEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---------------CCcEE
Q 023672          186 TKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------------SQTSA  248 (279)
Q Consensus       186 ~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---------------dg~i~  248 (279)
                      +.++ ++ .++.|++||+.++    +....+     .+...+.+++|+| ++.+|++++.               ||.|+
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~----~~~~~~-----~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~  384 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEK----KVQKSI-----PVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVY  384 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTT----EEEEEE-----ECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred             CEEEEEecCCCEEEEEECCCC----cEEEEe-----cCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEE
Confidence            7665 54 8999999999873    222222     2456789999999 8887777765               57999


Q ss_pred             EEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          249 IYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       249 ~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +||+.+++.+..+.. ...+.+++|+|||++
T Consensus       385 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~  414 (433)
T 3bws_A          385 VIDTTTDTVKEFWEA-GNQPTGLDVSPDNRY  414 (433)
T ss_dssp             EEETTTTEEEEEEEC-SSSEEEEEECTTSCE
T ss_pred             EEECCCCcEEEEecC-CCCCceEEEcCCCCE
Confidence            999999999988886 457999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=3.8e-24  Score=170.05  Aligned_cols=181  Identities=19%  Similarity=0.250  Sum_probs=136.3

Q ss_pred             eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+++||+.+ +...     ...+.+|.+.|++++|+|++++|++++.||.|++||+.++...                  
T Consensus        65 ~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------------------  121 (368)
T 3mmy_A           65 DVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI------------------  121 (368)
T ss_dssp             EEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------------------
T ss_pred             cEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce------------------
Confidence            577888876 3332     1256789999999999999999999999999999999876432                  


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc------------------------
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA------------------------  169 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------  169 (279)
                      ....+...|.++.|.|     ++++.+|++++.|+.|++||+++++.+..+..+..                        
T Consensus       122 ~~~~~~~~v~~~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  196 (368)
T 3mmy_A          122 QIAQHDAPVKTIHWIK-----APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ  196 (368)
T ss_dssp             EEEECSSCEEEEEEEE-----CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred             eeccccCceEEEEEEe-----CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence            2344667888888743     56778888888888888888877654433321110                        


Q ss_pred             -------------------------------------------------------------ccccc------------ce
Q 023672          170 -------------------------------------------------------------VDEIT------------AA  176 (279)
Q Consensus       170 -------------------------------------------------------------~~~~~------------~v  176 (279)
                                                                                   ..+..            .|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (368)
T 3mmy_A          197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV  276 (368)
T ss_dssp             CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred             eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence                                                                         00111            48


Q ss_pred             eeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       177 ~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      .+++|+|++++|+++ .|+.|++||++++    +....+    .+|...|.+++|+| ++.+|++++.|+..+.|++
T Consensus       277 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~----~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          277 NGIAFHPVHGTLATVGSDGRFSFWDKDAR----TKLKTS----EQLDQPISACCFNH-NGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEEC----CCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGG
T ss_pred             EEEEEecCCCEEEEEccCCeEEEEECCCC----cEEEEe----cCCCCCceEEEECC-CCCeEEEEecccccccccc
Confidence            999999999999966 9999999999974    333344    68889999999999 9999999999886555554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=5.7e-23  Score=166.16  Aligned_cols=196  Identities=13%  Similarity=0.075  Sum_probs=144.9

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCC---eEEEEeCCCCccccccccccccCCCCcc
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK---TLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      ..+++||+..... .      .+.+|.+.|.+++|+|||++|++++.|+   .|++||+.+++..               
T Consensus       159 ~~i~i~d~~g~~~-~------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------------  216 (415)
T 2hqs_A          159 YELRVSDYDGYNQ-F------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------  216 (415)
T ss_dssp             EEEEEEETTSCSC-E------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------------
T ss_pred             ceEEEEcCCCCCC-E------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------------
Confidence            5678888875433 2      4567889999999999999999999875   9999999876431               


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEE-EecCCCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCE
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK  187 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (279)
                         ....+...+..++|       +|+|+.|+ +++.++.  |++||+.+++. ..+..+..     .+.+++|+|+|+.
T Consensus       217 ---~l~~~~~~~~~~~~-------spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~-----~~~~~~~spdg~~  280 (415)
T 2hqs_A          217 ---QVASFPRHNGAPAF-------SPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS-----NNTEPTWFPDSQN  280 (415)
T ss_dssp             ---EEECCSSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS-----CEEEEEECTTSSE
T ss_pred             ---EeecCCCcccCEEE-------cCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC-----cccceEECCCCCE
Confidence               12233456777776       78898777 6666654  99999998875 34444443     7889999999998


Q ss_pred             EEE-ec-CC--eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEE
Q 023672          188 IFA-GY-NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYV  260 (279)
Q Consensus       188 l~~-~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~  260 (279)
                      |+. +. ++  .|++||+.++ . .   ..+    ..+...+.+++|+| ++.+|++++.+   ..|++||+.+++.. .
T Consensus       281 l~~~s~~~g~~~i~~~d~~~~-~-~---~~l----~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~  349 (415)
T 2hqs_A          281 LAFTSDQAGRPQVYKVNINGG-A-P---QRI----TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-V  349 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTSS-C-C---EEC----CCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred             EEEEECCCCCcEEEEEECCCC-C-E---EEE----ecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence            884 43 45  6777788763 1 1   122    34556788999999 88888887764   57999999988864 4


Q ss_pred             EeecCCCEEEEEEccCCCC
Q 023672          261 LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       261 ~~~~~~~v~~~~~spdg~~  279 (279)
                      +..+. .+.+++|+|||++
T Consensus       350 l~~~~-~~~~~~~spdg~~  367 (415)
T 2hqs_A          350 LSSTF-LDETPSLAPNGTM  367 (415)
T ss_dssp             CCCSS-SCEEEEECTTSSE
T ss_pred             ecCCC-CcCCeEEcCCCCE
Confidence            55554 8999999999973

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=2.8e-23  Score=168.64  Aligned_cols=194  Identities=14%  Similarity=0.094  Sum_probs=136.8

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...++.+++++++.++++++.|+ ++||+..............  .............+...|.+++|       +|+++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~-------spdg~  105 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP--NKIVDKVQGLLVPMKFPIHHLAL-------SCDNL  105 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT--TCEEECCCCEEECCSSCEEEEEE-------CTTSC
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc--ccccccCccccccCCCcccEEEE-------cCCCC
Confidence            44689999999999999999888 8998764211100000000  00000011122344567888877       77899


Q ss_pred             EEE----EecCCCcEEEEECCCC--------eee---EEEeccCccccccceeeEEECCC-CCEEEEe-cCCeEEEEEcc
Q 023672          140 VFA----STTRDHPIHLWDATTG--------LLR---CTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVH  202 (279)
Q Consensus       140 ~l~----s~~~d~~i~i~d~~~~--------~~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~~~d~~  202 (279)
                      +|+    +++.|+.|++||++++        +.+   ..+..|..     .|.+++|+|+ +.+++++ .|+.|++||++
T Consensus       106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~las~s~Dg~v~iwD~~  180 (434)
T 2oit_A          106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG-----MVIDMKWNPTVPSMVAVCLADGSIAVLQVT  180 (434)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG-----SEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred             EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCC-----ceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence            999    8899999999999765        222   22222333     8999999998 7888865 99999999999


Q ss_pred             CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-------CCEEEEEEcc
Q 023672          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-------GGVTHVSKLS  275 (279)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-------~~v~~~~~sp  275 (279)
                      ++    ......    .+|...|.+++|+| ++.+|++|+.||.|++||++ ++....+..|.       ..|.+++|++
T Consensus       181 ~~----~~~~~~----~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          181 ET----VKVCAT----LPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG  250 (434)
T ss_dssp             SS----EEEEEE----ECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred             CC----cceeec----cCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec
Confidence            74    222122    36778999999999 89999999999999999998 66666665443       2789999998


Q ss_pred             CCC
Q 023672          276 SAY  278 (279)
Q Consensus       276 dg~  278 (279)
                      ++.
T Consensus       251 ~~~  253 (434)
T 2oit_A          251 TYV  253 (434)
T ss_dssp             TTE
T ss_pred             Cce
Confidence            865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=2.7e-21  Score=156.35  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=142.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCe--EEEEeCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKT--LRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+++||+.+++..       .+..|.+.+.+++|+|||++|+ +++.|+.  |.+||+.++...                
T Consensus       204 ~i~~~d~~tg~~~-------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~----------------  260 (415)
T 2hqs_A          204 ALVIQTLANGAVR-------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----------------  260 (415)
T ss_dssp             EEEEEETTTCCEE-------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------
T ss_pred             EEEEEECCCCcEE-------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE----------------
Confidence            5677888776653       3456778899999999999888 6666655  999999865431                


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                        ....+...+..+.|       +|+|+.|++++. ++  .|.+||+.+++.. .+..+..     .+.+++|+|+|++|
T Consensus       261 --~l~~~~~~~~~~~~-------spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~-----~~~~~~~spdG~~l  325 (415)
T 2hqs_A          261 --QVTDGRSNNTEPTW-------FPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGS-----QNQDADVSSDGKFM  325 (415)
T ss_dssp             --ECCCCSSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSS-----EEEEEEECTTSSEE
T ss_pred             --eCcCCCCcccceEE-------CCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCC-----cccCeEECCCCCEE
Confidence              11233456777766       789998888776 44  6778899887643 3333333     67899999999999


Q ss_pred             EEe-cC---CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEE
Q 023672          189 FAG-YN---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVL  261 (279)
Q Consensus       189 ~~~-~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~  261 (279)
                      +.+ .+   ..|++||+.++ ..    ..+    ..+. .+.+++|+| ++.+|++++.++   .|++||+. +..+..+
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~-~~----~~l----~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l  393 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATG-GV----QVL----SSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL  393 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTC-CE----EEC----CCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred             EEEECcCCceEEEEEECCCC-CE----EEe----cCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence            844 43   58999999873 21    122    2333 789999999 888888887776   79999986 5567788


Q ss_pred             eecCCCEEEEEEccCCC
Q 023672          262 HGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       262 ~~~~~~v~~~~~spdg~  278 (279)
                      ..|.+.|.+++|+|.-.
T Consensus       394 ~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          394 PATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCSSSEEEEEEECCCCC
T ss_pred             eCCCCCCcCCccccccc
Confidence            88999999999999643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1.1e-21  Score=151.13  Aligned_cols=202  Identities=14%  Similarity=0.140  Sum_probs=143.4

Q ss_pred             eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCC-CccccccccccccCCCCcc
Q 023672           32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-NGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  110 (279)
                      ..-.+++||+.+++..       .+..|.+.|.+++|+|++++|++++ ++.|.+||+.+ +.....             
T Consensus        20 ~~~~i~~~d~~~~~~~-------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-------------   78 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMR-------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-------------   78 (297)
T ss_dssp             CCEEEEEEETTTTEEE-------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-------------
T ss_pred             cceeEEEEeCCCCcee-------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-------------
Confidence            3456888999887754       2445788999999999999999887 78999999987 533110             


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEec--CCCcEEEE--ECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT--RDHPIHLW--DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (279)
                         ....+...+.++.|       +|++++|++++  .++...||  ++.+++ ...+....      .+..++|+|+++
T Consensus        79 ---~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~------~~~~~~~spdg~  141 (297)
T 2ojh_A           79 ---DTGFATICNNDHGI-------SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL------PSYWHGWSPDGK  141 (297)
T ss_dssp             ---CCTTCCCBCSCCEE-------CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS------SEEEEEECTTSS
T ss_pred             ---ccccccccccceEE-------CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC------CccceEECCCCC
Confidence               11112234555555       88999999988  33455555  545544 33333322      577899999999


Q ss_pred             EEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecC-CCeEEEEEe
Q 023672          187 KIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYRED-NMELLYVLH  262 (279)
Q Consensus       187 ~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~-~~~~~~~~~  262 (279)
                      .++ ++ .++.+++|+++.......   .+    ..+...+.+++|+| ++..|+.++ .++.+++|++. .+..+..+.
T Consensus       142 ~l~~~~~~~~~~~l~~~~~~~~~~~---~~----~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  213 (297)
T 2ojh_A          142 SFTYCGIRDQVFDIYSMDIDSGVET---RL----THGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERIT  213 (297)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEE---EC----CCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred             EEEEEECCCCceEEEEEECCCCcce---Ec----ccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence            887 55 889999999764322221   22    45667899999999 777666555 58999999987 566677777


Q ss_pred             ecCCCEEEEEEccCCCC
Q 023672          263 GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       263 ~~~~~v~~~~~spdg~~  279 (279)
                      .|...+.+++|+|||++
T Consensus       214 ~~~~~~~~~~~s~dg~~  230 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDK  230 (297)
T ss_dssp             CCSEEEEEEEECTTSSE
T ss_pred             cCCcccCCeEECCCCCE
Confidence            78888999999999974

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.3e-21  Score=159.34  Aligned_cols=207  Identities=12%  Similarity=0.091  Sum_probs=138.6

Q ss_pred             eeeEecCCCCcccceeeeeeccC-CCCCceEEEEEccCCCeEEEeeCCCeEEEEeC--CCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL--PENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+.+||..+++++.      ++. +|.  +.+++|+|||++|++++.|++|.+||+  .+++....              
T Consensus       160 ~V~v~D~~t~~~~~------~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~--------------  217 (543)
T 1nir_A          160 QIALVDGDSKKIVK------VIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE--------------  217 (543)
T ss_dssp             EEEEEETTTCCEEE------EEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE--------------
T ss_pred             eEEEEECCCceEEE------EEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE--------------
Confidence            57788888887765      333 343  889999999999999999999999999  55432111              


Q ss_pred             ceeeecCCCceEEEEeeCcccccCC----CCcEEEEecC-CCcEEEEECCCCeeeEEEeccC----------c-------
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDP----TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYD----------A-------  169 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~----------~-------  169 (279)
                          ...+.....+       +|+|    +++++++++. +++|.+||..+++++..+....          .       
T Consensus       218 ----i~~g~~p~~v-------a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          218 ----IKIGIEARSV-------ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             ----EECCSEEEEE-------EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ----EecCCCcceE-------EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence                1122223333       3355    6666666553 5666666666655544443210          0       


Q ss_pred             ---------------------------------cccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeec
Q 023672          170 ---------------------------------VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       170 ---------------------------------~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                                                       ......+.++.|+|++++++ ++ .++.|.+||..++    +....+
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i  362 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALV  362 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEE
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----eEEEee
Confidence                                             00011455689999999776 45 6889999999984    333333


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCC-------CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDN-------MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ......|.+....+ ++|+++.+++++. .|++|.+||+.+       ++++.++..|.+.+..++|||||++
T Consensus       363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred             ccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence            22222355444443 5784577788876 689999999998       8999999999888899999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=2e-20  Score=146.75  Aligned_cols=203  Identities=14%  Similarity=0.138  Sum_probs=142.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||..+++...      ....+...+ +++|+|++++|++++. ++.|.+||+.++...                ..
T Consensus        21 ~v~~~d~~~~~~~~------~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----------------~~   77 (331)
T 3u4y_A           21 RISFFSTDTLEILN------QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----------------VV   77 (331)
T ss_dssp             EEEEEETTTCCEEE------EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----------------EE
T ss_pred             eEEEEeCcccceee------eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----------------EE
Confidence            57889998887754      223345556 9999999997776655 899999999865430                00


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCC---cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-  189 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-  189 (279)
                      ....+..+...+       +++|++++++++..++   .|.+||+.+++.+..+....      .+.+++|+|+|++++ 
T Consensus        78 ~~~~~~~~~~~~-------~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           78 AIQEGQSSMADV-------DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLIL  144 (331)
T ss_dssp             EEEECSSCCCCE-------EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEE
T ss_pred             ecccCCCCccce-------EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEE
Confidence            111122222224       4588999998665553   89999999999888776544      567999999998666 


Q ss_pred             Ee-cCCe-EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCCeE---EEEEee
Q 023672          190 AG-YNKS-VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMEL---LYVLHG  263 (279)
Q Consensus       190 ~~-~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~~~---~~~~~~  263 (279)
                      ++ .++. |.+|++...+.........    ......+..++|+| ++. +++++..++.|++||+.+++.   +..+..
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~  219 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTGQEF----ISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGT  219 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEE----ECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             EecCCCceEEEEEECCCCcEeecCCcc----ccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence            44 5577 9999998643322221111    12234578999999 776 555666789999999999988   777774


Q ss_pred             cCCCEEEEEEccCCCC
Q 023672          264 QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       264 ~~~~v~~~~~spdg~~  279 (279)
                      + ..+.+++|+|||++
T Consensus       220 ~-~~~~~~~~spdg~~  234 (331)
T 3u4y_A          220 N-NLPGTIVVSRDGST  234 (331)
T ss_dssp             S-SCCCCEEECTTSSE
T ss_pred             C-CCCceEEECCCCCE
Confidence            4 56789999999973

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=2.1e-21  Score=157.65  Aligned_cols=176  Identities=14%  Similarity=0.107  Sum_probs=122.4

Q ss_pred             CCCCceEEEEEccCCCeEE----EeeCCCeEEEEeCCCCccccccccccccCCCCccc--ceeeecCCCceEEEEeeCcc
Q 023672           58 IPNNFLKGIKWSPDGSSFL----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE--ASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .|.+.|.+++|+|++++|+    +|+.|++|+|||+.++......        .....  ......|...|.+++|+|. 
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~--------~~~~~~~~~~~~~h~~~V~~v~~~p~-  160 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ--------QKRPFAYHKLLKDAGGMVIDMKWNPT-  160 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS--------SCCCSEEEECCCSGGGSEEEEEECSS-
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC--------CcceeeeeeccCCCCCceEEEEECCC-
Confidence            3567899999999999999    7899999999998753100000        00000  1122346778999998443 


Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                           ++.+|++++.|++|++||++++........+..     .|.+++|+|+|++|++| .|+.|++||++.  .....
T Consensus       161 -----~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~-----~v~~v~wspdg~~lasgs~dg~v~iwd~~~--~~~~~  228 (434)
T 2oit_A          161 -----VPSMVAVCLADGSIAVLQVTETVKVCATLPSTV-----AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL--QEKKV  228 (434)
T ss_dssp             -----CTTEEEEEETTSCEEEEEESSSEEEEEEECGGG-----CEEEEEECTTSSCEEEEETTSCEEEECTTC--CEEEE
T ss_pred             -----CCCEEEEEECCCeEEEEEcCCCcceeeccCCCC-----ceeEEEEcCCCCEEEEEcCCCcEEEEccCC--ccccc
Confidence                 278999999999999999999866555554444     89999999999999976 999999999982  21111


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEE-EeCCC------cEEEEecCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQ------TSAIYREDNM  255 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~-~~~dg------~i~~wd~~~~  255 (279)
                      +.........|...|.+++|++ ++.++++ ++.+|      .+++|+++..
T Consensus       229 ~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          229 IPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccC
Confidence            1111000113445899999999 7777654 33443      3889999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.8e-20  Score=144.29  Aligned_cols=199  Identities=18%  Similarity=0.222  Sum_probs=139.3

Q ss_pred             eeeEecCCC-CcccceeeeeeccCCC-CCceEEEEEccCCCeEEEee--CCCeEEEEeCC--CCccccccccccccCCCC
Q 023672           35 PLIRFDVPP-HRTYHFYNQFRTSSIP-NNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLP--ENGISYDVNACSLAKDQD  108 (279)
Q Consensus        35 ~~~~~d~~~-~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~~--~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~  108 (279)
                      .+++||+.+ +....      ...+| ...|.+++|+|++++|++++  .++.+.||.++  ++..              
T Consensus        63 ~i~~~d~~~~~~~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--------------  122 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEK------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP--------------  122 (297)
T ss_dssp             EEEEEESSSCCSCEE------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC--------------
T ss_pred             eEEEEeCCCCCCceE------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce--------------
Confidence            567888877 65543      33444 47789999999999999988  34556666553  3211              


Q ss_pred             cccceeeecCCCceEEEEeeCcccccCCCCcEEE-EecCCCcEEEEECC--CCeeeEEEeccCccccccceeeEEECCCC
Q 023672          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (279)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (279)
                           ........+..+.|       +|+++.|+ +++.++.+++|+++  +++ ...+..+..     .+.+++|+|++
T Consensus       123 -----~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~-----~~~~~~~s~dg  184 (297)
T 2ojh_A          123 -----RLMTKNLPSYWHGW-------SPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEG-----RNDGPDYSPDG  184 (297)
T ss_dssp             -----EECCSSSSEEEEEE-------CTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSS-----CEEEEEECTTS
T ss_pred             -----EEeecCCCccceEE-------CCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCC-----ccccceECCCC
Confidence                 11112224666666       77888777 77789999999863  343 333333333     78899999999


Q ss_pred             CEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----------CcEEEEec
Q 023672          186 TKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----------QTSAIYRE  252 (279)
Q Consensus       186 ~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----------g~i~~wd~  252 (279)
                      +.++ ++ .++.+++|++...+....   .+    ..|...+.+++|+| ++.+|++++.+           +.|++||+
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~---~~----~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVE---RI----TDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEE---EC----CCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcE---EE----ecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            9887 45 689999999874332222   22    45566789999999 88888877765           56999999


Q ss_pred             CCCeE--EEEEeecCCCEEEEEEccCCCC
Q 023672          253 DNMEL--LYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       253 ~~~~~--~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .+++.  +..+.+|...+.+++|+|||++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          257 DGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             TSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             CCCCceeeeccCCCCcccccceECCCCCE
Confidence            88865  4455578889999999999973

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=3.5e-19  Score=140.71  Aligned_cols=224  Identities=10%  Similarity=0.111  Sum_probs=139.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+|++.++....    ......+...+..++|+|+|++|++++ .++.|.+|++.............. ... ...  
T Consensus        64 ~v~~~~~~~g~~~~----~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~-~p~--  135 (347)
T 3hfq_A           64 GIAAWQIDGQTAHK----LNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH-SGH-GPR--  135 (347)
T ss_dssp             EEEEEEEETTEEEE----EEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-CCC-CSS--
T ss_pred             eEEEEEecCCcEEE----eeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec-CCC-CCC--
Confidence            46677775544311    123344667789999999999888887 689999999963221111000000 000 000  


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC-CCeeeEE--EeccCccccccceeeEEECCCCCEEE-
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIF-  189 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~-~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-  189 (279)
                       .......+..+.|       +|+++++++...++.|.+|++. +++....  +.....    ..+..++|+|+|++++ 
T Consensus       136 -~~~~~~~~~~~~~-------spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g----~~p~~~~~spdg~~l~v  203 (347)
T 3hfq_A          136 -PEQDGSHIHYTDL-------TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG----FGPRHLVFSPDGQYAFL  203 (347)
T ss_dssp             -TTCSSCCEEEEEE-------CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT----CCEEEEEECTTSSEEEE
T ss_pred             -ccccCCCceEEEE-------CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC----CCCceEEECCCCCEEEE
Confidence             0001123555554       8889977777778899999998 5543322  122111    1567899999999776 


Q ss_pred             Ee-cCCeEEEEEccCCCCceeeeeecccccC--CCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecCC---CeEEEEEe
Q 023672          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE--GQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDN---MELLYVLH  262 (279)
Q Consensus       190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~~---~~~~~~~~  262 (279)
                      ++ .++.|.+|++............+.....  .....+..++|+| ++.+| ++...++.|.+||+..   .+.+..+.
T Consensus       204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~  282 (347)
T 3hfq_A          204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS  282 (347)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence            45 7899999999852222222222211101  1124588999999 77766 5666789999999973   25566666


Q ss_pred             ecCCCEEEEEEccCCCC
Q 023672          263 GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       263 ~~~~~v~~~~~spdg~~  279 (279)
                      .+...+.+++|+|||++
T Consensus       283 ~~~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          283 TEGDFPRDFDLDPTEAF  299 (347)
T ss_dssp             CSSSCCCEEEECTTSSE
T ss_pred             cCCCCcCeEEECCCCCE
Confidence            66667899999999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=1e-19  Score=157.19  Aligned_cols=213  Identities=8%  Similarity=-0.037  Sum_probs=141.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCC---ceEEEEEccCCCeEEEeeCC---------CeEEEEeCCCCcccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN---FLKGIKWSPDGSSFLTSSED---------KTLRIFSLPENGISYDVNACS  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~~~~~~~~~~  102 (279)
                      .+++||+.+++...      .+.+|..   .|.+++|||||++|++++.+         +.+.+||+.++..... .   
T Consensus        38 ~i~~~d~~~g~~~~------~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~---  107 (723)
T 1xfd_A           38 TVRLWNVETNTSTV------LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-D---  107 (723)
T ss_dssp             CEEEBCGGGCCCEE------EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-C---
T ss_pred             CEEEEECCCCcEEE------EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec-c---
Confidence            57788888876643      3445554   49999999999999998764         7888999987643100 0   


Q ss_pred             ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc----c------
Q 023672          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD----E------  172 (279)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~------  172 (279)
                                 ....+...+..+       +|+|||+.|++++. +.|++||+.+++.......+...-    .      
T Consensus       108 -----------~~~~~~~~~~~~-------~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A          108 -----------PPEVSNAKLQYA-------GWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             -----------CTTCCSCCCSBC-------CBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             -----------CCcccccccccc-------EECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence                       000111224444       45899999999886 789999999987766554322100    0      


Q ss_pred             ---ccceeeEEECCCCCEEEEe-cCC----------------------------------eEEEEEccCCCCceeeeeec
Q 023672          173 ---ITAAFSVAFNPTGTKIFAG-YNK----------------------------------SVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       173 ---~~~v~~~~~~~~~~~l~~~-~d~----------------------------------~i~~~d~~~~~~~~~~~~~~  214 (279)
                         ...+.+++|+|||+.|+.+ .++                                  .|++||+.++. ....+.. 
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~-  246 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMP-  246 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCC-
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeC-
Confidence               0123689999999998843 332                                  78899988732 1111110 


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeC----CCcEEEEecCCCeEEEEEee-cCCCEE----EEEEccCCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNMELLYVLHG-QEGGVT----HVSKLSSAYT  279 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~-~~~~v~----~~~~spdg~~  279 (279)
                      ......+...+.+++|+| ++.+|++.+.    +..|++||+.++++...+.. +...+.    .++|||||++
T Consensus       247 ~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          247 PDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             CCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             CccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe
Confidence            001122356789999999 8888877643    35799999999987766654 344443    8899999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=1.5e-18  Score=137.23  Aligned_cols=208  Identities=8%  Similarity=0.057  Sum_probs=142.7

Q ss_pred             eeeEecCCCCcccceeeeeecc---CCCCCceEEEEEccCCCeEEEee--CCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTS---SIPNNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      .+.+||..+++...........   ......+.+++|+|+++++++++  .++.|.+||..+++.....           
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-----------  180 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-----------  180 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-----------
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-----------
Confidence            5677888877765422210000   00011378999999999887765  4889999999876432111           


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                            ...+..+.       .++++|+++.+++++.++.|.+||+.+++....+..... +....+..++|+|+++.++
T Consensus       181 ------~~~~~~~~-------~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          181 ------QNTGKMST-------GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             ------CCCCTTCC-------CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEE
T ss_pred             ------cCCCCccc-------eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEE
Confidence                  00122233       345588999999999999999999999998877765321 1112567899999999877


Q ss_pred             E-e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672          190 A-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (279)
Q Consensus       190 ~-~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  266 (279)
                      + + .++.|.+||+.++ +...   .+..   +.   ...++|+| ++. ++++...++.|.+||..+++.+..+... .
T Consensus       247 ~~~~~~~~v~~~d~~~~-~~~~---~~~~---~~---~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~  314 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNG-NILA---KVAA---PE---SLAVLFNP-ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-T  314 (353)
T ss_dssp             EEESSSSEEEEEETTTC-CEEE---EEEC---SS---CCCEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             EEeCCCCEEEEEECCCC-cEEE---EEEc---CC---CceEEECC-CCCEEEEEECCCCeEEEEECCCCeEEEEEecC-C
Confidence            4 4 5699999999873 2222   2211   11   24689999 666 5555557899999999999998888754 4


Q ss_pred             CEEEEEEccCCCC
Q 023672          267 GVTHVSKLSSAYT  279 (279)
Q Consensus       267 ~v~~~~~spdg~~  279 (279)
                      .+.+++|+|||++
T Consensus       315 ~~~~~~~s~dg~~  327 (353)
T 3vgz_A          315 HPNSLALSADGKT  327 (353)
T ss_dssp             EEEEEEECTTSCE
T ss_pred             CCCeEEEcCCCCE
Confidence            6899999999973

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=7.8e-19  Score=138.13  Aligned_cols=190  Identities=14%  Similarity=0.123  Sum_probs=124.6

Q ss_pred             ceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .+.+++|+|++++|++++. ++.|.+||+..+.....               .........+..+       +++|++++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~---------------~~~~~~~~~~~~~-------~~s~dg~~  142 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV---------------VDVVEGLDGCHSA-------NISPDNRT  142 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE---------------EEEECCCTTBCCC-------EECTTSSE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc---------------cccccCCCCceEE-------EECCCCCE
Confidence            7899999999998876654 88999999952211000               0111122234444       45889988


Q ss_pred             EEEec-CCCcEEEEECCC-CeeeEE----EeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeee
Q 023672          141 FASTT-RDHPIHLWDATT-GLLRCT----YRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       141 l~s~~-~d~~i~i~d~~~-~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      +++++ .++.|.+||+.+ ++....    +.....    ..+.+++|+|++++++ ++ .++.|.+||+...........
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~  218 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  218 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCC----CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence            87776 899999999987 654332    222111    2677899999999776 55 789999999964222222222


Q ss_pred             ecccccCC--CCCceEEEEEccCCCcEEE-EEeCCCcEEEEecC--C--CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          213 TLKGNKEG--QAGIMSAIAFSPTHTGMLA-IGSYSQTSAIYRED--N--MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       213 ~~~~~~~~--~~~~v~~~~~sp~~~~~l~-~~~~dg~i~~wd~~--~--~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .......+  ....+..++|+| ++.+|+ ++..++.|.+||+.  +  .+.+..+..+.. +.+++|+|||++
T Consensus       219 ~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~  290 (343)
T 1ri6_A          219 TLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKY  290 (343)
T ss_dssp             EEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSE
T ss_pred             eccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCE
Confidence            22111111  134577899999 676555 56679999999998  3  345556665544 889999999973

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=1.3e-18  Score=136.82  Aligned_cols=207  Identities=7%  Similarity=0.102  Sum_probs=131.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC-CeEEEEeCC--CCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED-KTLRIFSLP--ENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .+.+|++........   . ....|...+.+++|+|++++|++++.+ +.|.+|++.  ++....               
T Consensus        16 ~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~---------------   76 (343)
T 1ri6_A           16 QIHVWNLNHEGALTL---T-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF---------------   76 (343)
T ss_dssp             EEEEEEECTTSCEEE---E-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---------------
T ss_pred             eEEEEEECCCCcEEE---e-eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee---------------
Confidence            467777743211111   1 122466779999999999999888876 999999997  332110               


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCC---CeeeEEEeccCccccccceeeEEECCCCCE
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATT---GLLRCTYRAYDAVDEITAAFSVAFNPTGTK  187 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (279)
                       .........+..++       ++|+++++++++ .++.|.+||+.+   .+....+....      .+.+++|+|++++
T Consensus        77 -~~~~~~~~~~~~~~-------~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~  142 (343)
T 1ri6_A           77 -AAESALPGSLTHIS-------TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD------GCHSANISPDNRT  142 (343)
T ss_dssp             -EEEEECSSCCSEEE-------ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT------TBCCCEECTTSSE
T ss_pred             -ccccccCCCCcEEE-------EcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC------CceEEEECCCCCE
Confidence             01111122444444       488898776665 488899999943   33444443322      5788999999998


Q ss_pred             EE-Ee-cCCeEEEEEccCCCCceeeee--ecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecCC--CeE--E
Q 023672          188 IF-AG-YNKSVRVFDVHRPGRDFEKYS--TLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDN--MEL--L  258 (279)
Q Consensus       188 l~-~~-~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~~--~~~--~  258 (279)
                      ++ ++ .++.|++||+.+.+. .....  ...   ......+..++|+| ++.+| +++..++.|.+||+..  ++.  .
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~  217 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGH-LVAQDPAEVT---TVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECV  217 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC-EEEEEEEEEE---CSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             EEEecCCCCEEEEEEecCCCc-eeeecccccc---cCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence            77 45 799999999986322 22111  111   12234688899999 77755 4555889999999953  433  3


Q ss_pred             EEEeec------CCCEEEEEEccCCCC
Q 023672          259 YVLHGQ------EGGVTHVSKLSSAYT  279 (279)
Q Consensus       259 ~~~~~~------~~~v~~~~~spdg~~  279 (279)
                      ..+...      ...+.+++|+|||++
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeccccCccccccCCccceEECCCCCE
Confidence            333311      235778999999963

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=1.3e-18  Score=137.48  Aligned_cols=210  Identities=10%  Similarity=0.053  Sum_probs=142.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||..+++......       ....+.+++|+|++++++ +...++.|.+||..+++..........    ..    
T Consensus        70 ~v~~~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~----  134 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIH-------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR----KR----  134 (353)
T ss_dssp             EEEEECTTTCCEEEEEE-------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC----CC----
T ss_pred             cEEEEcCCCCeEEEEEe-------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC----cc----
Confidence            47778888777654322       123477899999999655 555589999999987654222110000    00    


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEec--CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTT--RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      ........+..+.       ++|+++.+++++  .++.|.+||+.+++....+.....     .+.+++|+|+++.++++
T Consensus       135 ~~~~~~~~~~~~~-------~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          135 TEEVRPLQPRELV-------ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             CSSCCCCEEEEEE-------EETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEE
T ss_pred             ccccCCCCCceEE-------ECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEE
Confidence            0000000134444       477888777665  478899999999998888774443     57789999999988865


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecCCCeEEEEEeecCCCEE
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVT  269 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~  269 (279)
                       .++.|.+||+.++    +....+.....++...+..++|+| ++..|+.+ ..++.|.+||+.+++.+..+....  ..
T Consensus       203 ~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~  275 (353)
T 3vgz_A          203 NADGELITIDTADN----KILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL  275 (353)
T ss_dssp             CTTSEEEEEETTTT----EEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred             cCCCeEEEEECCCC----eEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence             8999999999874    222222222234556788999999 66655554 455899999999999888887544  25


Q ss_pred             EEEEccCCC
Q 023672          270 HVSKLSSAY  278 (279)
Q Consensus       270 ~~~~spdg~  278 (279)
                      +++|+|||+
T Consensus       276 ~~~~s~dg~  284 (353)
T 3vgz_A          276 AVLFNPARN  284 (353)
T ss_dssp             CEEEETTTT
T ss_pred             eEEECCCCC
Confidence            799999987

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=2.3e-18  Score=135.13  Aligned_cols=209  Identities=13%  Similarity=0.037  Sum_probs=141.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCC-ceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN-FLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||..+++.....     ..++.. .+.+++|+|++++++ +++.++.|.+||+.+++....               
T Consensus        12 ~v~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---------------   71 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVI-----TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR---------------   71 (337)
T ss_dssp             EEEEEETTTTEEEEEE-----ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE---------------
T ss_pred             eEEEEECCCCcEEEEE-----EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee---------------
Confidence            5778898887765421     112222 478899999998664 566689999999987643211               


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEec------------CCCcEEEEECCCCeeeEEEeccCccccccceeeEE
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA  180 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (279)
                       +.......   ..-.|..++++|+++.+++++            .++.|.+||+.+++....+....      .+.+++
T Consensus        72 -~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~  141 (337)
T 1pby_B           72 -IDLSTPEE---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLA  141 (337)
T ss_dssp             -EECCBTTE---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEE
T ss_pred             -EEcCCccc---ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC------CcceeE
Confidence             11111000   011234456689999888886            57999999999998877776533      567899


Q ss_pred             ECCCCCEEEEecCCeEEEEEccCCCCceeeeeecc--c------------------------------------------
Q 023672          181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK--G------------------------------------------  216 (279)
Q Consensus       181 ~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~--~------------------------------------------  216 (279)
                      |+|++++++++ ++.|++||+.++ +.......-.  .                                          
T Consensus       142 ~s~dg~~l~~~-~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          142 WARDGSKLYGL-GRDLHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             ECTTSSCEEEE-SSSEEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             ECCCCCEEEEe-CCeEEEEECCCC-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence            99999988866 788999999863 2111110000  0                                          


Q ss_pred             ---------------ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          217 ---------------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       217 ---------------~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                                     ....+...+.+++|+| ++.+|+++  ++.|++||+.+++.+..+..+ ..+.+++|+|||++
T Consensus       220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~  293 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCE
T ss_pred             ceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCE
Confidence                           0011223456799999 88888877  689999999999988877743 46789999999973

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=1.6e-19  Score=156.44  Aligned_cols=197  Identities=12%  Similarity=0.085  Sum_probs=131.0

Q ss_pred             CCceEEEEEccCCCeEEEeeC-CC-----eEEEEeCCCCccccccccccccCCCC------ccc-ceeeecCCCceEEEE
Q 023672           60 NNFLKGIKWSPDGSSFLTSSE-DK-----TLRIFSLPENGISYDVNACSLAKDQD------SYE-ASLVVTEGESVYDFC  126 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~v~~~~  126 (279)
                      ...|.+++|+|||++|++++. |+     .|.+||+.+++...............      ... ..........+..  
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD--  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC--
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce--
Confidence            456999999999999999998 88     99999998875432211110000000      000 0000000011333  


Q ss_pred             eeCcccccCCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCC
Q 023672          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP  204 (279)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~  204 (279)
                           ++|+|||++|++++. +.|.+||+.++.  ....+..+..     .+..++|+|||+.|+.+.++.|++||+.++
T Consensus       114 -----~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~~~i~~~d~~~g  182 (741)
T 2ecf_A          114 -----YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRGRNLWVIDLASG  182 (741)
T ss_dssp             -----CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred             -----eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence                 456899999999886 899999999872  2333433333     788999999999999777789999999873


Q ss_pred             CCceeeeeecccccCCCCC----------------ceEEEEEccCCCcEEEEEeCCC-----------------------
Q 023672          205 GRDFEKYSTLKGNKEGQAG----------------IMSAIAFSPTHTGMLAIGSYSQ-----------------------  245 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~----------------~v~~~~~sp~~~~~l~~~~~dg-----------------------  245 (279)
                       .   .....    ..+..                .+.+++||| +|..|++++.|+                       
T Consensus       183 -~---~~~~~----~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          183 -R---QMQLT----ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             -E---EEECC----CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             -C---EEEec----cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence             1   11111    11111                247899999 888888887665                       


Q ss_pred             ----------cEEEEecCC-CeEEEEEe--ecCCCEEEEEEccCCCC
Q 023672          246 ----------TSAIYREDN-MELLYVLH--GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       246 ----------~i~~wd~~~-~~~~~~~~--~~~~~v~~~~~spdg~~  279 (279)
                                .|++||+.+ ++......  .|...+.+++| |||++
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~  299 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH  299 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE
Confidence                      789999988 87654432  36678999999 99973

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=4.3e-19  Score=153.78  Aligned_cols=182  Identities=10%  Similarity=0.073  Sum_probs=129.4

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCC---ccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .|.+++|+|||++|++++. +.|.+||+.++   ...                  ....+...+..+.|       +|||
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~-------SPDG  163 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKL-------SPKG  163 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEE-------CTTS
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccC-------CCCC
Confidence            4889999999999999886 99999999875   221                  11223456777766       8899


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccc-----------cccceeeEEECCCCCEEEEe-cCC------------
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-----------EITAAFSVAFNPTGTKIFAG-YNK------------  194 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~-~d~------------  194 (279)
                      ++|++++ ++.|++||+.+++...........-           ....+.++.|+|||+.|+.+ .|+            
T Consensus       164 ~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~  242 (741)
T 2ecf_A          164 GFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY  242 (741)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred             CEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence            9999887 4689999999887654433222100           00014789999999988854 544            


Q ss_pred             ---------------------eEEEEEccC-CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-----CCcE
Q 023672          195 ---------------------SVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQTS  247 (279)
Q Consensus       195 ---------------------~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-----dg~i  247 (279)
                                           .|++||+.+ +..  ..+...    ..|...+.+++| | ++..|+.++.     +..|
T Consensus       243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~----~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT--QWIDLG----KEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC--EEECCC----SCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEE
T ss_pred             CCcccceEeecCCCCCCCCeeEEEEEECCCCCce--EEecCC----CCcceEEEEEEe-C-CCCEEEEEEecccCCeEEE
Confidence                                 788889876 421  111110    246778999999 9 8888876653     5679


Q ss_pred             EEEecCCCeEEEEEeecCC----CEEEEEEccCCC
Q 023672          248 AIYREDNMELLYVLHGQEG----GVTHVSKLSSAY  278 (279)
Q Consensus       248 ~~wd~~~~~~~~~~~~~~~----~v~~~~~spdg~  278 (279)
                      ++||+.++++...+..+..    .+.+++|+|||+
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~  349 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS  349 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence            9999999998877776653    456899999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=1.7e-18  Score=144.29  Aligned_cols=180  Identities=13%  Similarity=-0.018  Sum_probs=134.3

Q ss_pred             EEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC
Q 023672           67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR  146 (279)
Q Consensus        67 ~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~  146 (279)
                      +|+|++.++++++.|++|.+||..+++....                +..  +..+..+       +++|++++|++++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~----------------i~~--g~~~~~v-------~~spdg~~l~v~~~  198 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKV----------------IDT--GYAVHIS-------RMSASGRYLLVIGR  198 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEE----------------EEC--STTEEEE-------EECTTSCEEEEEET
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEE----------------Eec--CcccceE-------EECCCCCEEEEECC
Confidence            3889999999999999999999987654211                111  2224444       45899999999999


Q ss_pred             CCcEEEEEC--CCCeeeEEEeccCccccccceeeEEECC----CCCEEEEe--cCCeEEEEEccCCCCceeeeeeccccc
Q 023672          147 DHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       147 d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      |+.|.+||+  .+++.+..+....      .+..++|+|    +|++++++  .++.|.+||..+ .+....+.......
T Consensus       199 d~~V~v~D~~~~t~~~~~~i~~g~------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~  271 (543)
T 1nir_A          199 DARIDMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTV  271 (543)
T ss_dssp             TSEEEEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECS
T ss_pred             CCeEEEEECcCCCCcEEEEEecCC------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCccc
Confidence            999999999  8888888877543      678999999    99999855  589999999987 33333322110000


Q ss_pred             C---CCC-CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE--EEeecCCCEEEEEEccCCCC
Q 023672          219 E---GQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       219 ~---~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~spdg~~  279 (279)
                      .   .|. ..+.++.++|++..++++...++.|.+||+.+.+.+.  .+. +...+.+++|+|||+|
T Consensus       272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCE
T ss_pred             CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCE
Confidence            0   122 3688999999667788888899999999998876543  443 5667889999999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=1.8e-18  Score=135.63  Aligned_cols=206  Identities=10%  Similarity=0.144  Sum_probs=132.5

Q ss_pred             eeeEecCCCCcc-cceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCC---eEEEEeCCCCccccccccccccCCCCcc
Q 023672           35 PLIRFDVPPHRT-YHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK---TLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        35 ~~~~~d~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+++||..++.. ..      .+..+.....+++|+|++++|+++..++   .|.+||+.+++...              
T Consensus        63 ~i~~~d~~~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~--------------  122 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS--------------  122 (331)
T ss_dssp             EEEEEECSSSSCEEE------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE--------------
T ss_pred             eEEEEECCCCceeEE------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE--------------
Confidence            567788877765 32      3344555555599999999999665553   89999998764321              


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEe-cCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFAST-TRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (279)
                          ....+.....+.|       +|++++++++ ..++. |.+|++.....+.... .........+..++|+|+|+++
T Consensus       123 ----~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          123 ----TIPIPYDAVGIAI-------SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             ----EEECCTTEEEEEE-------CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEE
T ss_pred             ----EEECCCCccceEE-------CCCCCEEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEE
Confidence                1112233455554       8888755554 55688 9999997643322111 0000111257899999999976


Q ss_pred             E-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEE-EeCCCcEEEEecCCCeE--EEEEee
Q 023672          189 F-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNMEL--LYVLHG  263 (279)
Q Consensus       189 ~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~-~~~dg~i~~wd~~~~~~--~~~~~~  263 (279)
                      + ++ .++.|++||+.++ ........+.     ....+..++|+| ++.+|+. ...++.|.+||+.+++.  +..+..
T Consensus       191 ~v~~~~~~~v~v~d~~~~-~~~~~~~~~~-----~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNP-ENITLLNAVG-----TNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             EEEETTTTEEEEEECSST-TSCEEEEEEE-----CSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             EEEeCCCCeEEEEECCCC-cccceeeecc-----CCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence            6 55 7899999999873 3311122331     235577899999 7775554 44578899999999887  444443


Q ss_pred             c----CC---CEEEEEEccCCCC
Q 023672          264 Q----EG---GVTHVSKLSSAYT  279 (279)
Q Consensus       264 ~----~~---~v~~~~~spdg~~  279 (279)
                      +    ..   ...+++|+|||++
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg~~  286 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTETK  286 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTSSE
T ss_pred             ccccCCCCcccccceEECCCCCE
Confidence            2    11   2356899999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=8.3e-20  Score=157.78  Aligned_cols=187  Identities=13%  Similarity=0.060  Sum_probs=128.4

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC---ceEEEEeeCcccccCCCC
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE---SVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~  138 (279)
                      .+.+++|+|||+++++ +.||+|++||+.+++...                 +...+..   .|..+.|       +|||
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~-----------------~~~~~~~~~~~v~~~~~-------SpDg   72 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV-----------------LIEGKKIESLRAIRYEI-------SPDR   72 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE-----------------EECTTTTTTTTCSEEEE-------CTTS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE-----------------EeccccccccccceEEE-------CCCC
Confidence            3678899999997766 789999999998764321                 1111111   3556655       8899


Q ss_pred             cEEEEecCC---------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCcee
Q 023672          139 CVFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       139 ~~l~s~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~  209 (279)
                      ++|++++.+         +.|.+||+.+++. ..+....  .+...+..++|+|||+.|+.+.++.|++||+.++ ....
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g-~~~~  148 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE--VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK-QAIR  148 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT--CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS-CCEE
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc--cccccccccEECCCCCEEEEEECCeEEEEECCCC-ceEE
Confidence            999998764         6788999998875 3333221  1111477899999999999776689999999873 2221


Q ss_pred             eeeecccc--cCCC---------CCceEEEEEccCCCcEEEEEeCCC---------------------------------
Q 023672          210 KYSTLKGN--KEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQ---------------------------------  245 (279)
Q Consensus       210 ~~~~~~~~--~~~~---------~~~v~~~~~sp~~~~~l~~~~~dg---------------------------------  245 (279)
                      ....-...  ..++         ...+.+++||| +|..|++++.|+                                 
T Consensus       149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  227 (723)
T 1xfd_A          149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS  227 (723)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred             EecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence            11000000  0000         01237899999 888888887543                                 


Q ss_pred             -cEEEEecCCCeEEEEEeec------CCCEEEEEEccCCC
Q 023672          246 -TSAIYREDNMELLYVLHGQ------EGGVTHVSKLSSAY  278 (279)
Q Consensus       246 -~i~~wd~~~~~~~~~~~~~------~~~v~~~~~spdg~  278 (279)
                       .|++||+.+++....+..+      ...+.+++|||||+
T Consensus       228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~  267 (723)
T 1xfd_A          228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK  267 (723)
T ss_dssp             EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred             eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence             7999999998865666654      56789999999996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=2.2e-18  Score=148.53  Aligned_cols=185  Identities=16%  Similarity=0.192  Sum_probs=124.7

Q ss_pred             eEEEEEccCCCeEEEee---------------------------------CCCeEEEEeCCCCccccccccccccCCCCc
Q 023672           63 LKGIKWSPDGSSFLTSS---------------------------------EDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  109 (279)
                      +.+++|+|||++|++++                                 .+..|.+||+.++......           
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-----------  251 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-----------  251 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-----------
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-----------
Confidence            58999999999999887                                 4467999999865431100           


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCC-----cEEEEECCCCeeeEEEeccCccccccceeeEEECC-
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-  183 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  183 (279)
                          ....+...+..+.|       +|+|+.|++++.++     .|.+||+.+++....+...........+.++.|+| 
T Consensus       252 ----~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~  320 (706)
T 2z3z_A          252 ----TGEPKEKFLTNLSW-------SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG  320 (706)
T ss_dssp             ----CCSCTTCEEEEEEE-------CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ----cCCCCceeEeeEEE-------ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence                00123345777776       78999999887665     89999999984333332221111111246789999 


Q ss_pred             -CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEE-EEEccCCCcEE-EEEeCCC----cEEEEecCCC
Q 023672          184 -TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA-IAFSPTHTGML-AIGSYSQ----TSAIYREDNM  255 (279)
Q Consensus       184 -~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~~l-~~~~~dg----~i~~wd~~~~  255 (279)
                       +|++++++ .++.++||++...+..   ...+    ..+...+.. ++|+| ++..| ++++.++    .|+.||+.++
T Consensus       321 ~dg~~l~~~~~~g~~~l~~~~~~~~~---~~~l----~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          321 SNNQFIWQSRRDGWNHLYLYDTTGRL---IRQV----TKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             CSSEEEEEECTTSSCEEEEEETTSCE---EEEC----CCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             CCCEEEEEEccCCccEEEEEECCCCE---EEec----CCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCC
Confidence             99988866 8899999988732322   2223    355666766 79999 66655 4555554    5777787776


Q ss_pred             eEEEEEeecCCCEEEEEEccCCCC
Q 023672          256 ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      + +..+. +...+.+++|||||++
T Consensus       393 ~-~~~l~-~~~~~~~~~~spdg~~  414 (706)
T 2z3z_A          393 K-TKDLT-PESGMHRTQLSPDGSA  414 (706)
T ss_dssp             C-CEESC-CSSSEEEEEECTTSSE
T ss_pred             C-ceecc-CCCceEEEEECCCCCE
Confidence            5 33444 6678999999999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1e-18  Score=156.56  Aligned_cols=178  Identities=11%  Similarity=0.085  Sum_probs=136.0

Q ss_pred             CCCceEEEEEc-cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC-ceEEEEeeCcccccCC
Q 023672           59 PNNFLKGIKWS-PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDP  136 (279)
Q Consensus        59 h~~~v~~~~~~-~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~  136 (279)
                      |.+.|.+++|+ |||++|++++ ++.|.+|++.++....                 + ..+.. .+..+.|       + 
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~-------s-  346 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-----------------V-PEPLRIRYVRRGG-------D-  346 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-----------------C-SCCSCEEEEEECS-------S-
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-----------------c-cCCCcceEEeeeE-------c-
Confidence            44579999999 9999999888 7899999987653210                 1 11222 4555554       7 


Q ss_pred             CCcEEEEecCCCcEE-EEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeec
Q 023672          137 TSCVFASTTRDHPIH-LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +++.|++++.+..+. +||+.+++... +..+..     .+..++|+|+|+.|+.+ .++.|++||+.++ .   .....
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~-----~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~---~~~~~  416 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETG-K---PTVIE  416 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTTC-C---EEEEE
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceE-ecCCcc-----ceeeeEECCCCCEEEEECCCCeEEEEECCCC-c---eEEec
Confidence            898999988888888 99998776443 333332     78899999999999865 8899999999873 2   11122


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCC----------cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----------TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                          .+|...+.+++|+| ++.+|++++.++          .|++||+.+++ +..+..|...+.+++|+|||++
T Consensus       417 ----~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          417 ----RSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN  485 (1045)
T ss_dssp             ----ECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred             ----cCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence                36777889999999 888888877644          89999999887 6677778888999999999973

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=1.3e-18  Score=149.90  Aligned_cols=218  Identities=12%  Similarity=0.093  Sum_probs=142.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCC-----CccccccccccccCCCCc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-----NGISYDVNACSLAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~  109 (279)
                      .+++||+.+++..       .+..+...+.+++|+|||++|+++ .|+.|.+||+.+     +.........     ...
T Consensus       102 ~i~~~d~~~~~~~-------~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~-----~~~  168 (706)
T 2z3z_A          102 GLVGFDMLARKVT-------YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG-----TET  168 (706)
T ss_dssp             EEEEEETTTTEEE-------EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC-----BTT
T ss_pred             EEEEEECCCCceE-------EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCC-----CCC
Confidence            5678888776553       233456778999999999999985 689999999987     5332110000     000


Q ss_pred             cc--ceeeecCCCceEEEEeeCcccccCCCCcEEEEec---------------------------------CCCcEEEEE
Q 023672          110 YE--ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT---------------------------------RDHPIHLWD  154 (279)
Q Consensus       110 ~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~---------------------------------~d~~i~i~d  154 (279)
                      ..  ......+...+..+.       |+|||++|++++                                 .+..|.+||
T Consensus       169 ~~~g~~~~~ee~~~~~~~~-------~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d  241 (706)
T 2z3z_A          169 LVYGQAVHQREFGIEKGTF-------WSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH  241 (706)
T ss_dssp             EEESSCCGGGCTTCCCSEE-------ECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred             eEcccchhhhhcCCCceEE-------ECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence            00  000001111234444       488999999987                                 446799999


Q ss_pred             CCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC-----eEEEEEccCCCCceeeeeecccccCCCCCceEEE
Q 023672          155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-----SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (279)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (279)
                      +.+++........   .+...+.+++|+|+|+.|+++ .++     .|++||+.++ .....+...  ........+.++
T Consensus       242 ~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~--~~~~~~~~~~~~  315 (706)
T 2z3z_A          242 LATGKTVYLQTGE---PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVE--TDKHYVEPLHPL  315 (706)
T ss_dssp             TTTTEEEECCCCS---CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEE--ECSSCCCCCSCC
T ss_pred             CCCCceEeeccCC---CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEc--cCCCeECccCCc
Confidence            9988764433211   111268899999999988854 554     8999999873 122222111  001111234678


Q ss_pred             EEcc-CCCcEEEEEeCCCcEEEEecC-CCeEEEEEeecCCCEEE-EEEccCCC
Q 023672          229 AFSP-THTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTH-VSKLSSAY  278 (279)
Q Consensus       229 ~~sp-~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~-~~~spdg~  278 (279)
                      +|+| +++.+|++++.|+.++||++. ++..+..+..+...+.+ ++|+|||+
T Consensus       316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT  368 (706)
T ss_dssp             EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS
T ss_pred             eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC
Confidence            9999 245688999999999999886 67777888888778887 89999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=8.8e-18  Score=132.64  Aligned_cols=212  Identities=13%  Similarity=0.082  Sum_probs=129.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
                      .++.||..++.....     ....+...+..++|+|+|+ |++++.   ++.|.+|++.++.....              
T Consensus        19 ~v~~~d~~tg~~~~~-----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~--------------   78 (347)
T 3hfq_A           19 YQGTLDTTAKTLTND-----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL--------------   78 (347)
T ss_dssp             EEEEEETTTTEEEEE-----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------
T ss_pred             EEEEEcCCCCeEEEe-----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------
Confidence            355666666654321     1223446678899999999 655544   68999999975432100              


Q ss_pred             ceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECC-CCe--eeEEEeccCcc----ccccceeeEEECC
Q 023672          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDAT-TGL--LRCTYRAYDAV----DEITAAFSVAFNP  183 (279)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~-~~~--~~~~~~~~~~~----~~~~~v~~~~~~~  183 (279)
                      . ....+...+..       ++++|++++|++++ .++.|.+|++. ++.  .+..+......    .....+.+++|+|
T Consensus        79 ~-~~~~~~~~p~~-------~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp  150 (347)
T 3hfq_A           79 N-TVVAPGTPPAY-------VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP  150 (347)
T ss_dssp             E-EEEEESCCCSE-------EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred             e-eeecCCCCCEE-------EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence            0 00112223333       45588999888877 67899999996 333  23333221110    0112477899999


Q ss_pred             CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEeCCCcEEEEecCC--CeE--
Q 023672          184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGSYSQTSAIYREDN--MEL--  257 (279)
Q Consensus       184 ~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~~dg~i~~wd~~~--~~~--  257 (279)
                      +|+++++. .++.|++||+...+. ......+.   ......+..++|+| ++.+ ++++..++.|.+|++..  ++.  
T Consensus       151 dg~l~v~~~~~~~v~~~~~~~~g~-~~~~~~~~---~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          151 DNRLAVIDLGSDKVYVYNVSDAGQ-LSEQSVLT---MEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             TSCEEEEETTTTEEEEEEECTTSC-EEEEEEEE---CCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCcEEEEeCCCCEEEEEEECCCCc-EEEeeeEE---cCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence            99955565 788999999984232 22221111   11223577899999 7774 44566788999999874  543  


Q ss_pred             EEEEeecC------CCEEEEEEccCCCC
Q 023672          258 LYVLHGQE------GGVTHVSKLSSAYT  279 (279)
Q Consensus       258 ~~~~~~~~------~~v~~~~~spdg~~  279 (279)
                      +..+....      ..+.+++|+|||++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            33343332      34889999999974

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=156.71  Aligned_cols=209  Identities=12%  Similarity=0.107  Sum_probs=138.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCC---ceEEEEEccCCCeEEEeeC---------CCeEEEEeCCCCcccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN---FLKGIKWSPDGSSFLTSSE---------DKTLRIFSLPENGISYDVNACS  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~t~~~---------dg~i~iwd~~~~~~~~~~~~~~  102 (279)
                      .+++||+.+++...      .+.+|..   .|.+++|||||++|++++.         |+.|++||+.++......   .
T Consensus        37 ~i~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~---~  107 (719)
T 1z68_A           37 NIVLYNIETGQSYT------ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN---E  107 (719)
T ss_dssp             CEEEEESSSCCEEE------EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS---C
T ss_pred             CEEEEEcCCCcEEE------EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce---e
Confidence            57788888877654      2333322   4899999999999998876         789999999876431000   0


Q ss_pred             ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc----ccc-----
Q 023672          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV----DEI-----  173 (279)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~-----  173 (279)
                                 +    ...+..+.|       ||||+.|+++. ++.|++||+.+++...........    +..     
T Consensus       108 -----------l----~~~~~~~~~-------SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~  164 (719)
T 1z68_A          108 -----------L----PRPIQYLCW-------SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE  164 (719)
T ss_dssp             -----------C----CSSBCCEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred             -----------c----CcccccceE-------CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence                       0    123455555       88999999886 789999999988765432111100    000     


Q ss_pred             ----cceeeEEECCCCCEEEEe-cC-C---------------------------------eEEEEEccCCCCce--eeee
Q 023672          174 ----TAAFSVAFNPTGTKIFAG-YN-K---------------------------------SVRVFDVHRPGRDF--EKYS  212 (279)
Q Consensus       174 ----~~v~~~~~~~~~~~l~~~-~d-~---------------------------------~i~~~d~~~~~~~~--~~~~  212 (279)
                          ....+++|+|||+.|+.+ .| +                                 .|++||+.++ ...  ..+ 
T Consensus       165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~-  242 (719)
T 1z68_A          165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEV-  242 (719)
T ss_dssp             HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEEC-
T ss_pred             eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEc-
Confidence                012489999999999843 33 1                                 7889999863 110  000 


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCC----CcEEEEe----cCCCeEEEEE----eecCCCEE-----EEEEcc
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYR----EDNMELLYVL----HGQEGGVT-----HVSKLS  275 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d----g~i~~wd----~~~~~~~~~~----~~~~~~v~-----~~~~sp  275 (279)
                      .....+.+|...+.+++|+| ++.++++....    ..|.+||    +.++++...+    ..|...+.     .++|+|
T Consensus       243 ~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  321 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY  321 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred             cCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence            00011246777899999999 68877775432    2488999    8887765444    46777776     899999


Q ss_pred             CCC
Q 023672          276 SAY  278 (279)
Q Consensus       276 dg~  278 (279)
                      ||+
T Consensus       322 dg~  324 (719)
T 1z68_A          322 DAI  324 (719)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            997

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=2.4e-16  Score=125.09  Aligned_cols=198  Identities=11%  Similarity=0.131  Sum_probs=121.6

Q ss_pred             CCceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...+.+++|+|+|++|++++ .++.|.+|++...............    ..........+.....+       +|+|++
T Consensus       154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~-------~~spdg  222 (361)
T 3scy_A          154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----GTPEAFKVAPGSGPRHL-------IFNSDG  222 (361)
T ss_dssp             SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----EEEEEEECCTTCCEEEE-------EECTTS
T ss_pred             CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----ccccceecCCCCCCeEE-------EEcCCC
Confidence            34568899999999776555 4889999998753210000000000    00001122233334445       458899


Q ss_pred             cEEEEec-CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-e-c-CCeEEEEEccCCCCceeeeeec
Q 023672          139 CVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-Y-NKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       139 ~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~-d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +++++++ .++.|.+|++.+++................+..++|+|+|++|++ . . ++.|.+|++............+
T Consensus       223 ~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred             CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence            9877766 689999999987765332222211111124679999999998874 4 4 5899999997322223333333


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEE--ecCCCeEEEEE-eecCCCEEEEEEc
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIY--REDNMELLYVL-HGQEGGVTHVSKL  274 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~w--d~~~~~~~~~~-~~~~~~v~~~~~s  274 (279)
                      .    . ...+.+++|+| ++.+|++++ .++.|.+|  |..++++.... ..+...+.+++|.
T Consensus       303 ~----~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          303 L----T-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             E----C-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             c----C-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            1    2 34678999999 888777776 67889996  55577765433 2244578999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=6.2e-17  Score=128.36  Aligned_cols=89  Identities=11%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             EEECCCCCEEEEe-c-----------CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672          179 VAFNPTGTKIFAG-Y-----------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (279)
Q Consensus       179 ~~~~~~~~~l~~~-~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~  246 (279)
                      ++|+|+++.+++. .           ++.|.+||+.+.    +....+    ..+.  +.+++|+| ++.+|++++. +.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i----~~~~--p~~ia~sp-dg~~l~v~n~-~~  326 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARI----PGRD--ALSMTIDQ-QRNLMLTLDG-GN  326 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEE----ECTT--CCEEEEET-TTTEEEEECS-SC
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----cEEEEE----ecCC--eeEEEECC-CCCEEEEeCC-Ce
Confidence            6788887777743 3           347999998873    333343    2333  88999999 8888888886 99


Q ss_pred             EEEEecCCC--eEEEEEeecCCCEEEEEEccCCCC
Q 023672          247 SAIYREDNM--ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       247 i~~wd~~~~--~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |.+||..++  +.+..+..+......++++|||++
T Consensus       327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~~  361 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGGT  361 (361)
T ss_dssp             EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred             EEEEECCCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence            999999999  999888667778899999999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.78  E-value=6.5e-17  Score=126.81  Aligned_cols=192  Identities=16%  Similarity=0.149  Sum_probs=122.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee------------CCCeEEEEeCCCCcccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS------------EDKTLRIFSLPENGISYDVNACS  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~------------~dg~i~iwd~~~~~~~~~~~~~~  102 (279)
                      .+.+||+.+++........ ....|...+.+++|+|++++|++++            .++.|.+||+.+++.....    
T Consensus        57 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~----  131 (337)
T 1pby_B           57 SLVKIDLVTGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF----  131 (337)
T ss_dssp             EEEEEETTTCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE----
T ss_pred             eEEEEECCCCCeEeeEEcC-CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE----
Confidence            5778888877765422110 0000223577899999999998886            5799999999876432111    


Q ss_pred             ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC--c-----------
Q 023672          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--A-----------  169 (279)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~--~-----------  169 (279)
                                    ..+..+..+       +++|++++|+++  ++.|.+||+.+++....+....  .           
T Consensus       132 --------------~~~~~~~~~-------~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  188 (337)
T 1pby_B          132 --------------EAPRQITML-------AWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             --------------ECCSSCCCE-------EECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             --------------eCCCCccee-------EECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence                          011112222       335555555554  4556666665555443333221  0           


Q ss_pred             ------------------------------------------------cccccceeeEEECCCCCEEEEecCCeEEEEEc
Q 023672          170 ------------------------------------------------VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV  201 (279)
Q Consensus       170 ------------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~  201 (279)
                                                                      ......+.+++|+|++++++++ ++.|.+||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~  267 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDL  267 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEET
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEEC
Confidence                                                            0000135579999999999877 799999999


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      .++    +....+.     ....+.+++|+| ++.+|++++.++.|++||+.+++.+..+..+.
T Consensus       268 ~~~----~~~~~~~-----~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          268 EKN----ASIKRVP-----LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TTT----EEEEEEE-----CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CCC----cCcceec-----CCCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            873    2222221     123578999999 88888888889999999999999988887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=1.7e-16  Score=126.00  Aligned_cols=212  Identities=12%  Similarity=0.109  Sum_probs=126.9

Q ss_pred             CCCceEEEEEccCCCeEEEeeCC----CeEEEEeCCC--Ccccc--cc-----ccccccCC---------CCcccceeee
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPE--NGISY--DV-----NACSLAKD---------QDSYEASLVV  116 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~d----g~i~iwd~~~--~~~~~--~~-----~~~~~~~~---------~~~~~~~~~~  116 (279)
                      +...+..++|+|++++|++++.+    +.|.+|++..  +....  ..     ..+.+...         .+..+..+..
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            56677889999999999988876    7999999865  32211  00     00100000         0011111111


Q ss_pred             cCCCceEEE----Ee-------------eCcccccCCCCcEEEEe-cCCCcEEEEECCCCee------e------EEEec
Q 023672          117 TEGESVYDF----CW-------------FPHMSASDPTSCVFAST-TRDHPIHLWDATTGLL------R------CTYRA  166 (279)
Q Consensus       117 ~~~~~v~~~----~~-------------~~~~~~~~~~~~~l~s~-~~d~~i~i~d~~~~~~------~------~~~~~  166 (279)
                      ...+.+..+    ..             ++.+++++|++++++++ ..++.|.+|++.....      +      .....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            111111000    00             01336789999966555 4588999998875431      1      11111


Q ss_pred             cCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-
Q 023672          167 YDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-  243 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-  243 (279)
                      ...    ..+..++|+|+|++++ ++ .++.|.+||+.++ . ......+.. ...+...+..++|+| ++++|+++.. 
T Consensus       208 ~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~-~~~~~~~~~-~~~~~~~~~~i~~sp-dg~~l~v~~~~  279 (361)
T 3scy_A          208 APG----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-M-LDEIQTVAA-DTVNAQGSGDIHLSP-DGKYLYASNRL  279 (361)
T ss_dssp             CTT----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-E-EEEEEEEES-CSSCCCCEEEEEECT-TSSEEEEEECS
T ss_pred             CCC----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-c-eEEeEEEec-CCCCCCCcccEEECC-CCCEEEEECCC
Confidence            111    1567899999999887 45 6899999999853 1 222222211 123344578999999 8887766554 


Q ss_pred             -CCcEEEEecC--CCe--EEEEEeecCCCEEEEEEccCCCC
Q 023672          244 -SQTSAIYRED--NME--LLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       244 -dg~i~~wd~~--~~~--~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       ++.|.+|++.  +++  .+..+.. ...+.+++|+|||++
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~  319 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKY  319 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCE
Confidence             4889999995  444  4455554 457889999999974

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=4.8e-19  Score=152.98  Aligned_cols=181  Identities=10%  Similarity=0.109  Sum_probs=122.7

Q ss_pred             EEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCC---CceEEEEeeCcccccCCCCcEE
Q 023672           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG---ESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        65 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      +++|+|+++++++ +.|++|++||+.++.....                 ...+.   ..+..+.|       ||||++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~-----------------~~~~~~~~~~~~~~~~-------SpDg~~l   74 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTI-----------------LSNRTMKSVNASNYGL-------SPDRQFV   74 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEE-----------------ECHHHHHTTTCSEEEE-------CTTSSEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEE-----------------EccccccccceeeEEE-------CCCCCeE
Confidence            6799999965554 4699999999987653211                 11111   12555555       8899999


Q ss_pred             EEecC---------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          142 ASTTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       142 ~s~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      ++++.         ++.|++||+.+++.+...... .     .+..++|+|||+.|+.+.++.|++||+.++ .......
T Consensus        75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~-----~~~~~~~SPDG~~la~~~~~~i~~~~~~~g-~~~~l~~  147 (719)
T 1z68_A           75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-R-----PIQYLCWSPVGSKLAYVYQNNIYLKQRPGD-PPFQITF  147 (719)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-S-----SBCCEEECSSTTCEEEEETTEEEEESSTTS-CCEECCC
T ss_pred             EEEecCceeEEeecceEEEEEECCCCccccceecC-c-----ccccceECCCCCEEEEEECCeEEEEeCCCC-CcEEEec
Confidence            98876         789999999998763111111 1     577899999999999778899999999874 2211100


Q ss_pred             ecc--cccCCCCCc---------eEEEEEccCCCcEEEEEeCCC----------------------------------cE
Q 023672          213 TLK--GNKEGQAGI---------MSAIAFSPTHTGMLAIGSYSQ----------------------------------TS  247 (279)
Q Consensus       213 ~~~--~~~~~~~~~---------v~~~~~sp~~~~~l~~~~~dg----------------------------------~i  247 (279)
                      .-.  ....++...         ..+++||| +|..|++++.|.                                  .|
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            000  000122211         25899999 899999887552                                  78


Q ss_pred             EEEecCCCeEE--EE------EeecCCCEEEEEEccCCC
Q 023672          248 AIYREDNMELL--YV------LHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       248 ~~wd~~~~~~~--~~------~~~~~~~v~~~~~spdg~  278 (279)
                      ++||+.+++..  ..      +.+|...+.+++|||||+
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~  265 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER  265 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence            89999888752  11      234677899999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=4.1e-16  Score=123.98  Aligned_cols=191  Identities=12%  Similarity=0.112  Sum_probs=123.9

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCC-CCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP-ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      +...+..++|+|++++|++++.+ .|.+|++. ++.....                ......+       .|..++++|+
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~----------------~~~~~~g-------~~~~~~~spd   93 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE----------------ASHPIGG-------HPRANDADTN   93 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE----------------EEEECCS-------SGGGGCTTSC
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe----------------eEeecCC-------CCccEEECCC
Confidence            33467899999999999999888 99999986 4432100                0000001       1444678999


Q ss_pred             CcE--EEEec-------------CCCcEEEEECC-CCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEE
Q 023672          138 SCV--FASTT-------------RDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVF  199 (279)
Q Consensus       138 ~~~--l~s~~-------------~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~  199 (279)
                      +++  +++++             .++.+.+|++. +++....+..... .....+.+++|+|+|++++++  .++.|++|
T Consensus        94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A           94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence            994  55554             68999999997 4655444332100 011267899999999988854  57899999


Q ss_pred             Ecc-CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecC--CCeEE---EEEee-------cC
Q 023672          200 DVH-RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYRED--NMELL---YVLHG-------QE  265 (279)
Q Consensus       200 d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~--~~~~~---~~~~~-------~~  265 (279)
                      |+. ++ + ......+.  ...|...+..++|+| ++++|++++. ++.|.+|++.  +++..   ..+..       |.
T Consensus       173 ~~~~~g-~-~~~~~~~~--~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          173 RKLASG-E-VELVGSVD--APDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EECTTS-C-EEEEEEEE--CSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EECCCC-C-EEEeeeEe--cCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence            998 42 2 12111221  012345688999999 8887777664 7889999865  56543   22321       12


Q ss_pred             C------CEEEEE-EccCCCC
Q 023672          266 G------GVTHVS-KLSSAYT  279 (279)
Q Consensus       266 ~------~v~~~~-~spdg~~  279 (279)
                      .      .+.+++ |+|||++
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSE
T ss_pred             cccccccccccEEEECCCCCE
Confidence            1      488999 9999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.76  E-value=9e-17  Score=144.09  Aligned_cols=171  Identities=13%  Similarity=0.069  Sum_probs=128.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCC-ceEEEEEccCCCeEEEeeCCCeEE-EEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN-FLKGIKWSPDGSSFLTSSEDKTLR-IFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+++|+...+...       .+..|.+ .+..++|+ ||+.|++++.++.+. +|++.++...                 
T Consensus       318 ~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-----------------  372 (1045)
T 1k32_A          318 QAFIQDVSGTYVL-------KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-----------------  372 (1045)
T ss_dssp             EEEEECTTSSBEE-------ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-----------------
T ss_pred             EEEEEcCCCCceE-------EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-----------------
Confidence            3455665554432       3556777 89999999 999999999888888 8998764321                 


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                      .+. .+...+..++|       +|+|++|++++.++.|++||+.+++....+..+..     .+.+++|+|+|++|+.+ 
T Consensus       373 ~l~-~~~~~~~~~~~-------SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~-----~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          373 KFE-ENLGNVFAMGV-------DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             ECC-CCCCSEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEE
T ss_pred             Eec-CCccceeeeEE-------CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC-----CccceEECCCCCeEEEEe
Confidence            012 34456777766       88999999999999999999999988777655554     77899999999998844 


Q ss_pred             cC----------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          192 YN----------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       192 ~d----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .+          +.|++||+.++    + ...+    ..|...+.+++|+| +|..|+.++.++...+|+..
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~g----~-~~~l----~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEGR----K-IFAA----TTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTT----E-EEEC----SCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSS
T ss_pred             cCccccccCCCCCeEEEEECCCC----c-EEEe----eCCCcccCCceEcC-CCCEEEEEecccCCcCcchh
Confidence            43          48999999873    1 2223    46677788999999 88999988887777777643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=1.4e-17  Score=140.40  Aligned_cols=175  Identities=13%  Similarity=0.049  Sum_probs=118.0

Q ss_pred             CCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ..+|.+++|+|||++||+++. ||+++||++.++....                 +..++...+..+.|       +|+ 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-----------------lt~~~~~~~~~~~~-------spd-   75 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-----------------LNREPINSVLDPHY-------GVG-   75 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-----------------CCSSCCSEECEECT-------TCS-
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-----------------eecccccccccccC-------CCC-
Confidence            345999999999999998887 9999999986543211                 11222235666655       777 


Q ss_pred             cEEEEecC---CCcEEEEECCC---CeeeEEEeccCccccccceeeEEECCCCCEE--EEecCCeEEEEEccCCCCceee
Q 023672          139 CVFASTTR---DHPIHLWDATT---GLLRCTYRAYDAVDEITAAFSVAFNPTGTKI--FAGYNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       139 ~~l~s~~~---d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d~~i~~~d~~~~~~~~~~  210 (279)
                      +++++++.   +....+|.+..   +... .+....      .+...+|+|+++.+  +++.++.+.+||+.++ .. . 
T Consensus        76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~-~-  145 (582)
T 3o4h_A           76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDGG-GL-R-  145 (582)
T ss_dssp             EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EE-E-
T ss_pred             eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccCC-cE-E-
Confidence            67777765   45556655432   3222 332222      33456888887643  3455566669999873 21 1 


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCC----CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                        .+.    .+..  .+++||| +|.+|++++.+    +.|++||+.+++.. .+..|.+.+.+++|||||++
T Consensus       146 --~l~----~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          146 --ELA----RLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKV  208 (582)
T ss_dssp             --EEE----EESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCE
T ss_pred             --Eee----cCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCE
Confidence              111    1112  7899999 89999988777    77999999988765 67778888999999999974

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=2.2e-17  Score=143.01  Aligned_cols=186  Identities=15%  Similarity=0.203  Sum_probs=122.3

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      ...+++|+||+++|+++  |++|++||+.++...........            ........++       ++||||++|
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-------~~Spdg~~l   76 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------DEFGHSINDY-------SISPDGQFI   76 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT------------TTCCSCCCEE-------EECTTSSEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh------------hhhcccccce-------EECCCCCEE
Confidence            46689999999988886  99999999998754211100000            0000011223       448999999


Q ss_pred             EEecCC---------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672          142 ASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       142 ~s~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      ++++.+         +.+.+||+.+++... +..+..     .+...+|||||+.|+.+.++.|++||+.++ .... + 
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~-----~~~~~~~SPdG~~la~~~~~~i~~~~~~~~-~~~~-l-  147 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPN-----NTQWVTWSPVGHKLAYVWNNDIYVKIEPNL-PSYR-I-  147 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCT-----TEEEEEECSSTTCEEEEETTEEEEESSTTS-CCEE-C-
T ss_pred             EEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCC-----cceeeEECCCCCEEEEEECCeEEEEECCCC-ceEE-E-
Confidence            998876         556799999988643 333332     678999999999999778899999999873 2111 1 


Q ss_pred             eccc----ccCCCC---------CceEEEEEccCCCcEEEEEeCCC----------------------------------
Q 023672          213 TLKG----NKEGQA---------GIMSAIAFSPTHTGMLAIGSYSQ----------------------------------  245 (279)
Q Consensus       213 ~~~~----~~~~~~---------~~v~~~~~sp~~~~~l~~~~~dg----------------------------------  245 (279)
                      +...    ...++.         +....+.||| +|..|+.++.|.                                  
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~  226 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP  226 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence            1100    001111         1223589999 888888775322                                  


Q ss_pred             --cEEEEecCC---Ce--EEEEEee------cCCCEEEEEEccCCC
Q 023672          246 --TSAIYREDN---ME--LLYVLHG------QEGGVTHVSKLSSAY  278 (279)
Q Consensus       246 --~i~~wd~~~---~~--~~~~~~~------~~~~v~~~~~spdg~  278 (279)
                        .|++||+.+   ++  ....+..      |...+..++|||||+
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~  272 (740)
T 4a5s_A          227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER  272 (740)
T ss_dssp             EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred             eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe
Confidence              488899988   73  2233432      667799999999996

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=2.5e-16  Score=124.14  Aligned_cols=189  Identities=14%  Similarity=0.152  Sum_probs=126.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCC-----CCceEEEEEccCCCeEEEeeCC------------CeEEEEeCCCCccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIP-----NNFLKGIKWSPDGSSFLTSSED------------KTLRIFSLPENGISYD   97 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~t~~~d------------g~i~iwd~~~~~~~~~   97 (279)
                      .+.+||+.+++......     .++     ...+.+++|+|+|++|++++.+            +.|.+||+.+++....
T Consensus        66 ~i~~~d~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  140 (349)
T 1jmx_B           66 DIYGIDLDTCKNTFHAN-----LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP  140 (349)
T ss_dssp             EEEEEETTTTEEEEEEE-----SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred             cEEEEeCCCCcEEEEEE-----cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence            46778887776543211     112     2347889999999999988865            8999999986432111


Q ss_pred             cccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc------
Q 023672           98 VNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD------  171 (279)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~------  171 (279)
                      .               ........+.+++       ++|+++ +++++  +.|.+||+.+++....+.......      
T Consensus       141 ~---------------~~~~~~~~~~~~~-------~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  195 (349)
T 1jmx_B          141 V---------------RTFPMPRQVYLMR-------AADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAP  195 (349)
T ss_dssp             S---------------EEEECCSSCCCEE-------ECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCC
T ss_pred             e---------------eeccCCCccccee-------ECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCc
Confidence            0               1111222344444       488898 55554  349999999988777665432000      


Q ss_pred             ---------------------------------------------------------cccceeeEEECC-CCCEEEEecC
Q 023672          172 ---------------------------------------------------------EITAAFSVAFNP-TGTKIFAGYN  193 (279)
Q Consensus       172 ---------------------------------------------------------~~~~v~~~~~~~-~~~~l~~~~d  193 (279)
                                                                               ....+..++|+| ++++++++ +
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~  274 (349)
T 1jmx_B          196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L  274 (349)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E
T ss_pred             cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-c
Confidence                                                                     001345678889 99999877 8


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      +.|.+||+.++    +....+.     ....+.+++|+| ++..|++++.++.|++||+.+++.+..++..
T Consensus       275 ~~v~~~d~~~~----~~~~~~~-----~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          275 NRLAKYDLKQR----KLIKAAN-----LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SEEEEEETTTT----EEEEEEE-----CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEECccC----eEEEEEc-----CCCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            99999999873    2222221     123467899999 7777777888999999999999998888755

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=9.8e-17  Score=127.59  Aligned_cols=193  Identities=12%  Similarity=0.099  Sum_probs=120.9

Q ss_pred             eEEEEEccCCCe--EEEee-------------CCCeEEEEeCCC-CccccccccccccCCCCcccceeeecCCCceEEEE
Q 023672           63 LKGIKWSPDGSS--FLTSS-------------EDKTLRIFSLPE-NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC  126 (279)
Q Consensus        63 v~~~~~~~~~~~--l~t~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  126 (279)
                      +.+++|+|+|++  +++++             .+|++.+|++.. +......             ......+...+..+.
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~-------------~~~~~~~~~~~~~~~  151 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV-------------QNYEYQENTGIHGMV  151 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE-------------EEEECCTTCCEEEEE
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE-------------eeEEeCCCCcceEEE
Confidence            556899999994  55553             689999999974 3221100             000011334455555


Q ss_pred             eeCcccccCCCCcEEEEec-CCCcEEEEECC-CCeeeE--EEeccCccccccceeeEEECCCCCEEEE-e-cCCeEEEEE
Q 023672          127 WFPHMSASDPTSCVFASTT-RDHPIHLWDAT-TGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFD  200 (279)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~-~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~~~d  200 (279)
                      |       +|+|+++++++ .++.|.+|++. +++...  .+....   +...+..++|+|+|+++++ + .++.|.+|+
T Consensus       152 ~-------spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~---~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          152 F-------DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD---PGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             E-------CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS---TTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             E-------CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC---CCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            5       88999887765 46799999998 676532  222111   0116789999999998874 4 578999998


Q ss_pred             ccCC-CCce---eeeeecccccCCCCC------ceEEEE-EccCCCcEEEEEeCC-C-----cEEEEecC-CCeEEE---
Q 023672          201 VHRP-GRDF---EKYSTLKGNKEGQAG------IMSAIA-FSPTHTGMLAIGSYS-Q-----TSAIYRED-NMELLY---  259 (279)
Q Consensus       201 ~~~~-~~~~---~~~~~~~~~~~~~~~------~v~~~~-~sp~~~~~l~~~~~d-g-----~i~~wd~~-~~~~~~---  259 (279)
                      +... +...   ..+..+.....+|..      .+..++ |+| ++++|++++.+ +     .|.+|++. ++++..   
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~  300 (365)
T 1jof_A          222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeee
Confidence            8631 2211   112222211123332      588999 999 88877766543 2     89999996 666543   


Q ss_pred             EEeecCCCEEEEEEcc---CCCC
Q 023672          260 VLHGQEGGVTHVSKLS---SAYT  279 (279)
Q Consensus       260 ~~~~~~~~v~~~~~sp---dg~~  279 (279)
                      .+..+...+..++|+|   ||++
T Consensus       301 ~~~~~~~~~~~~a~sp~~~dg~~  323 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTE
T ss_pred             eeecCCCCcccceecCCCcCCCE
Confidence            2333555677899999   7864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=2.8e-16  Score=123.80  Aligned_cols=166  Identities=10%  Similarity=0.044  Sum_probs=112.0

Q ss_pred             EEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE-EE
Q 023672           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AS  143 (279)
Q Consensus        65 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s  143 (279)
                      ++++++++.++++++.++.|.+||+.+++....                +.......+..+       +++|+++.+ ++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------~~~~~~~~~~~~-------~~s~dg~~~~v~   60 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS----------------CVMPDKFGPGTA-------MMAPDNRTAYVL   60 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEE----------------EECSSCCSSCEE-------EECTTSSEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEE----------------EecCCCCCCcee-------EECCCCCEEEEE
Confidence            456788888999999999999999987643211                111111123333       458888765 45


Q ss_pred             ecCCCcEEEEECCCCeeeEEEeccCcc-ccccceeeEEECCCCCEEEEe-c------------CCeEEEEEccCCCCcee
Q 023672          144 TTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-Y------------NKSVRVFDVHRPGRDFE  209 (279)
Q Consensus       144 ~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~------------d~~i~~~d~~~~~~~~~  209 (279)
                      +..++.|.+||+.+++....+...... .....+..++|+|+|++++++ .            ++.|.+||+.++ +...
T Consensus        61 ~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~  139 (349)
T 1jmx_B           61 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG-LEAK  139 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG-GGBC
T ss_pred             eCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc-cccc
Confidence            567899999999999887777643210 001146789999999999865 4            499999999862 2222


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .....     .+...+.+++|+| ++. +++++  +.|++||+.+++.+..+..
T Consensus       140 ~~~~~-----~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          140 PVRTF-----PMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             CSEEE-----ECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECS
T ss_pred             eeeec-----cCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccc
Confidence            22222     2233588899999 777 44444  3499999999887776653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=5e-17  Score=137.09  Aligned_cols=192  Identities=14%  Similarity=0.102  Sum_probs=126.9

Q ss_pred             eeEecCCCCcccceeeeeeccCCCC-CceEEEEEccCCCeEEEeeC---CCeEEEEeCCC--CccccccccccccCCCCc
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPN-NFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPE--NGISYDVNACSLAKDQDS  109 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~  109 (279)
                      +.+|++..+...       .+..|. ..|..++|+|| +.+++++.   +....||.+..  ....              
T Consensus        46 ~~lw~~~~g~~~-------~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~--------------  103 (582)
T 3o4h_A           46 VNAYLYDGGETV-------KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE--------------  103 (582)
T ss_dssp             EEEEEEETTEEE-------ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC--------------
T ss_pred             eeEEEEcCCCcE-------eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc--------------
Confidence            446665444332       344454 68999999999 77777765   45566766543  1110              


Q ss_pred             ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (279)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (279)
                          ........+...+|+|     ++++..+++++.++ +.+||+.+++.......+       . .+++|+|||++|+
T Consensus       104 ----~~l~~~~~~~~~~~s~-----dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~-------~-~~~~~spDG~~la  165 (582)
T 3o4h_A          104 ----QRLEAVKPMRILSGVD-----TGEAVVFTGATEDR-VALYALDGGGLRELARLP-------G-FGFVSDIRGDLIA  165 (582)
T ss_dssp             ----EECTTSCSBEEEEEEE-----CSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-------S-CEEEEEEETTEEE
T ss_pred             ----ccccCCCCceeeeeCC-----CCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-------C-ceEEECCCCCEEE
Confidence                0011111222334422     22333455555554 559999988765544322       2 6899999999999


Q ss_pred             E-ecC----CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC--cEEEEecCCCeEEEEEe
Q 023672          190 A-GYN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLH  262 (279)
Q Consensus       190 ~-~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~  262 (279)
                      . +.+    +.|++||+.++. .    ..+    ..|...+..++||| +|+.|+++..++  .|++||+.+++.. .+.
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~-~----~~l----~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~  234 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGG-L----RVF----DSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLE  234 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCC-C----EEE----CCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred             EEEEcCCCCeEEEEEcCCCCC-c----eEe----ecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence            4 455    679999998732 1    122    46677889999999 899999888888  8999999999887 777


Q ss_pred             ecCCCEEEEE--------EccCCC
Q 023672          263 GQEGGVTHVS--------KLSSAY  278 (279)
Q Consensus       263 ~~~~~v~~~~--------~spdg~  278 (279)
                      .|...+.+++        |+|||+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~spdg~  258 (582)
T 3o4h_A          235 LPSKDFSSYRPTAITWLGYLPDGR  258 (582)
T ss_dssp             CSCSHHHHHCCSEEEEEEECTTSC
T ss_pred             CCCcChhhhhhccccceeEcCCCc
Confidence            7777777777        999984

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=1.4e-16  Score=138.03  Aligned_cols=209  Identities=11%  Similarity=0.012  Sum_probs=131.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCC-----ceEEEEEccCCCeEEEeeCC---------CeEEEEeCCCCcccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN-----FLKGIKWSPDGSSFLTSSED---------KTLRIFSLPENGISYDVNA  100 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~~~~~~~~  100 (279)
                      .+.+||+.+++...      .+.+|..     ....++|||||++|+.++.+         +.+.+||+.+++...    
T Consensus        37 ~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----  106 (740)
T 4a5s_A           37 NILVFNAEYGNSSV------FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----  106 (740)
T ss_dssp             EEEEEETTTCCEEE------EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----
T ss_pred             cEEEEECCCCceEE------EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE----
Confidence            47789988887643      3444432     33458899999999988876         566799999875421    


Q ss_pred             ccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc-----cc--
Q 023672          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-----EI--  173 (279)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~--  173 (279)
                                    ...+...+....|       ||||+.||.+. ++.|++||+.+++...... .....     ..  
T Consensus       107 --------------l~~~~~~~~~~~~-------SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~  163 (740)
T 4a5s_A          107 --------------EERIPNNTQWVTW-------SPVGHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDW  163 (740)
T ss_dssp             --------------SSCCCTTEEEEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCH
T ss_pred             --------------cccCCCcceeeEE-------CCCCCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccc
Confidence                          1112345666666       88999999885 6899999999887543221 11100     00  


Q ss_pred             -------cceeeEEECCCCCEEEE-e-cCC-----------------------------------eEEEEEccC---CCC
Q 023672          174 -------TAAFSVAFNPTGTKIFA-G-YNK-----------------------------------SVRVFDVHR---PGR  206 (279)
Q Consensus       174 -------~~v~~~~~~~~~~~l~~-~-~d~-----------------------------------~i~~~d~~~---~~~  206 (279)
                             .....+.|||||+.|+. . .++                                   .|++||+.+   +..
T Consensus       164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                   11235899999998884 3 333                                   366666665   311


Q ss_pred             -ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC----CCcEEEEecCCCe----EE--EEE--eecCCCEE----
Q 023672          207 -DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNME----LL--YVL--HGQEGGVT----  269 (279)
Q Consensus       207 -~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~----dg~i~~wd~~~~~----~~--~~~--~~~~~~v~----  269 (279)
                       ....+ .......+|...+..++|+| ++.+++....    +..|++||+.+++    +.  ..+  ..|...|.    
T Consensus       244 ~~~~~l-~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          244 ATSIQI-TAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             CCEEEE-CCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             ceEEEe-cCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence             11111 00000013677899999999 7886665432    3369999999887    22  222  44665554    


Q ss_pred             -EEEEccCCC
Q 023672          270 -HVSKLSSAY  278 (279)
Q Consensus       270 -~~~~spdg~  278 (279)
                       .++|+|||+
T Consensus       322 ~~p~fspDG~  331 (740)
T 4a5s_A          322 SEPHFTLDGN  331 (740)
T ss_dssp             CCCEECTTSS
T ss_pred             CCceEcCCCC
Confidence             789999997

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=1.9e-15  Score=121.01  Aligned_cols=186  Identities=12%  Similarity=0.072  Sum_probs=122.5

Q ss_pred             ccCCCCCceEE-----EEEccCCCeEEEeeC-CCe--EEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEE
Q 023672           55 TSSIPNNFLKG-----IKWSPDGSSFLTSSE-DKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC  126 (279)
Q Consensus        55 ~~~~h~~~v~~-----~~~~~~~~~l~t~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  126 (279)
                      .+..|......     .+|+|||++|+.++. +|.  |.+||+.++....                 +...+...+... 
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-----------------lt~~~~~~~~~~-   86 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-----------------LTEGRGDNTFGG-   86 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-----------------CCCSSCBCSSSC-
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-----------------eeeCCCCCccce-
Confidence            45556655555     889999999998887 674  7888887654321                 111122222233 


Q ss_pred             eeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceee--EEECCCCCEEEEe-------------
Q 023672          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS--VAFNPTGTKIFAG-------------  191 (279)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~-------------  191 (279)
                            .++|+++.|+.++.++.|++||+.+++....+..+..     .+..  ..++|+++.+++.             
T Consensus        87 ------~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           87 ------FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE-----WVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             ------EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             ------EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh-----cccccceeECCCCCeeccccccCccccccccc
Confidence                  3488999999999999999999999987766655443     3322  3458999988731             


Q ss_pred             ----------cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC------CcEEEEecCCC
Q 023672          192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNM  255 (279)
Q Consensus       192 ----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d------g~i~~wd~~~~  255 (279)
                                .+..|.+||+.++ .. .   .+    ..+...+..++|+|.++..|+..+.+      ..|.++|...+
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g-~~-~---~l----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTG-ES-T---VI----LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTC-CE-E---EE----EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             chhhhhhccCCcceEEEEECCCC-ce-E---Ee----ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence                      3467999999873 21 1   11    13345688999999445556555443      36788887665


Q ss_pred             eEEEEEeecC--CCEEEEEEccCCCC
Q 023672          256 ELLYVLHGQE--GGVTHVSKLSSAYT  279 (279)
Q Consensus       256 ~~~~~~~~~~--~~v~~~~~spdg~~  279 (279)
                      +.. .+..+.  ..+..++|||||++
T Consensus       227 ~~~-~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          227 NMR-KVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             CCE-ESCCCCTTEEEEEEEECTTSSC
T ss_pred             ceE-EeeeCCCCcccccceECCCCCE
Confidence            543 343343  25788999999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.69  E-value=1.2e-15  Score=122.09  Aligned_cols=201  Identities=10%  Similarity=0.045  Sum_probs=126.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+++||+.++....      ...+|...+..++|+|||+.|+.++.++.|.+||+.+++...                 +
T Consensus        61 ~l~~~d~~~g~~~~------lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-----------------~  117 (388)
T 3pe7_A           61 NYYLLDLNTQVATQ------LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-----------------V  117 (388)
T ss_dssp             EEEEEETTTCEEEE------CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------------E
T ss_pred             eEEEEeCCCCceEE------eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-----------------e
Confidence            46677777766543      445566666678899999999999999999999998764321                 1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEE----------------------ecCCCcEEEEECCCCeeeEEEeccCcccc
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFAS----------------------TTRDHPIHLWDATTGLLRCTYRAYDAVDE  172 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s----------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  172 (279)
                      ...+...+....|     .+++++..++.                      ...+..|.+||+.+++....... ..   
T Consensus       118 ~~~~~~~~~~~~~-----~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~---  188 (388)
T 3pe7_A          118 YQVPAEWVGYGTW-----VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQ---  188 (388)
T ss_dssp             EECCTTEEEEEEE-----EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SS---
T ss_pred             eechhhcccccce-----eECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-Cc---
Confidence            1122223333333     33678877763                      23456899999999876544433 22   


Q ss_pred             ccceeeEEECC-CCCEEE-Eec------CCeEEEEEccCCCCceeeeeecccccCCCC--CceEEEEEccCCCcEEEEEe
Q 023672          173 ITAAFSVAFNP-TGTKIF-AGY------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       173 ~~~v~~~~~~~-~~~~l~-~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~l~~~~  242 (279)
                        .+..+.|+| +|+.|+ +..      ...|.++|+... . ..   .+    ..+.  ..+..++|+| +|..|+..+
T Consensus       189 --~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~---~l----~~~~~~~~~~~~~~sp-dg~~l~~~~  256 (388)
T 3pe7_A          189 --WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-N-MR---KV----KTHAEGESCTHEFWVP-DGSALVYVS  256 (388)
T ss_dssp             --CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-C-CE---ES----CCCCTTEEEEEEEECT-TSSCEEEEE
T ss_pred             --cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-c-eE---Ee----eeCCCCcccccceECC-CCCEEEEEe
Confidence              678899999 998887 333      236777777642 1 11   22    1222  3577889999 777665433


Q ss_pred             C-CC----cEEEEecCCCeEE--EEEeecCCC---EEEEEEccCCCC
Q 023672          243 Y-SQ----TSAIYREDNMELL--YVLHGQEGG---VTHVSKLSSAYT  279 (279)
Q Consensus       243 ~-dg----~i~~wd~~~~~~~--~~~~~~~~~---v~~~~~spdg~~  279 (279)
                      . ++    .|++||+.+++..  ..+.++...   ...++|+|||++
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~  303 (388)
T 3pe7_A          257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD  303 (388)
T ss_dssp             EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC
T ss_pred             cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc
Confidence            2 22    3999999988743  333321100   112378999863

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=2.2e-13  Score=104.48  Aligned_cols=206  Identities=11%  Similarity=0.161  Sum_probs=133.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEE-ccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW-SPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.+||.. +.....+.......+|...+.++++ .++++++++... ++.|.+||.. +.....               
T Consensus        52 ~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~~~~---------------  114 (286)
T 1q7f_A           52 RIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRK---------------  114 (286)
T ss_dssp             EEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEE---------------
T ss_pred             EEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcEEEE---------------
Confidence            46667765 3332222111112345567899999 467776666543 8899999943 322110               


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                       +.......+..+       +++++++++++...++.|.+||.. ++....+....   ....+.+++++|+++++++. 
T Consensus       115 -~~~~~~~~~~~i-------~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          115 -FGATILQHPRGV-------TVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK---HLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             -ECTTTCSCEEEE-------EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT---TCSSEEEEEECSSSEEEEEEG
T ss_pred             -ecCccCCCceEE-------EEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC---ccCCcEEEEECCCCCEEEEEC
Confidence             111112234444       457889888887888999999964 55555554221   11257899999999877766 


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEecCCCeEEEEEeecCC--CE
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYREDNMELLYVLHGQEG--GV  268 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~--~v  268 (279)
                      .++.|++||...  .   ....+..  .++...+..++++| ++.++++...++ .|.+||. +++.+..+..+..  .+
T Consensus       183 ~~~~i~~~~~~g--~---~~~~~~~--~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          183 RAHCVKVFNYEG--Q---YLRQIGG--EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC  253 (286)
T ss_dssp             GGTEEEEEETTC--C---EEEEESC--TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred             CCCEEEEEcCCC--C---EEEEEcc--CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence            789999999853  2   2222211  23335688999999 888888888776 9999995 6777777766543  47


Q ss_pred             EEEEEccCCC
Q 023672          269 THVSKLSSAY  278 (279)
Q Consensus       269 ~~~~~spdg~  278 (279)
                      .+++++|||+
T Consensus       254 ~~i~~~~~g~  263 (286)
T 1q7f_A          254 FDVALMDDGS  263 (286)
T ss_dssp             EEEEEETTTE
T ss_pred             eeEEECCCCc
Confidence            8999999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=1.9e-13  Score=107.18  Aligned_cols=207  Identities=8%  Similarity=0.035  Sum_probs=131.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC----CeEEEEeCCCCccccccccccccCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+.+||..+++...      ....+...+.+++++|+++++++...+    +.|.+||..++......            
T Consensus        67 ~i~~~d~~~~~~~~------~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~------------  128 (333)
T 2dg1_A           67 NIFKINPETKEIKR------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII------------  128 (333)
T ss_dssp             EEEEECTTTCCEEE------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE------------
T ss_pred             EEEEEeCCCCcEEE------EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE------------
Confidence            35556665554432      112355779999999999988777666    68999998765431100            


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCcEEEEecC------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT  184 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (279)
                         ........+..+.+       +|+++++++...      .+.|..+|..+++....... ..     .+..++|+|+
T Consensus       129 ---~~~~~~~~~~~i~~-------d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~-----~~~~i~~~~d  192 (333)
T 2dg1_A          129 ---EDLSTAYCIDDMVF-------DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-IS-----VANGIALSTD  192 (333)
T ss_dssp             ---CSSSSCCCEEEEEE-------CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ES-----SEEEEEECTT
T ss_pred             ---ccCccCCcccceEE-------CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CC-----cccceEECCC
Confidence               00012234555554       778887776653      34566677665554332221 11     5678999999


Q ss_pred             CCEEE-Ee-cCCeEEEEEccCCCCceeeee-ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          185 GTKIF-AG-YNKSVRVFDVHRPGRDFEKYS-TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       185 ~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                      ++.++ +. .++.|.+||+.+.+....... .......++ ..+..+++++ ++.++++...++.|.+||. +++.+..+
T Consensus       193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            98665 44 678999999975333222111 110011222 4678899999 8888888777889999998 57777777


Q ss_pred             eecCC------CEEEEEEccCCC
Q 023672          262 HGQEG------GVTHVSKLSSAY  278 (279)
Q Consensus       262 ~~~~~------~v~~~~~spdg~  278 (279)
                      ..+..      .+.+++|+|||+
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSC
T ss_pred             EcCCCccccccCcceEEECCCCC
Confidence            65433      589999999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.8e-14  Score=123.40  Aligned_cols=173  Identities=13%  Similarity=0.028  Sum_probs=115.6

Q ss_pred             CCCceEEEEEccCCCeEEEeeCC----------CeEEEEeCCC------CccccccccccccCCCCcccceeeecCCCce
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSED----------KTLRIFSLPE------NGISYDVNACSLAKDQDSYEASLVVTEGESV  122 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~d----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  122 (279)
                      |...+.+++|+|||+.|++++.|          ..|.+||+.+      +....                 +...+...+
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------l~~~~~~~~  190 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE-----------------LSDDAHRFV  190 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE-----------------SSCSCSSEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE-----------------EEecCCCcc
Confidence            67789999999999999988877          5899999986      32100                 110112233


Q ss_pred             EEEEeeCcccccCCCCcEEEEecCC--------CcEEEEECC-CC---eeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          123 YDFCWFPHMSASDPTSCVFASTTRD--------HPIHLWDAT-TG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~s~~~d--------~~i~i~d~~-~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      ..+       +++|||+.|+.++.+        ..|.+||+. ++   +.......+..     .+..+.|+|+|+++++
T Consensus       191 ~~~-------~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-----~~~~~~~spdg~l~~~  258 (662)
T 3azo_A          191 TGP-------RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-----AIAQAEWAPDGSLIVA  258 (662)
T ss_dssp             CCC-------EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-----CEEEEEECTTSCEEEE
T ss_pred             cCc-------eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-----eEcceEECCCCeEEEE
Confidence            344       458999999887754        379999998 56   43333333233     6789999999996666


Q ss_pred             e-cCC--eEEEEEccCCCCceeeeeecccccCCCCC--------ceEEEEEccCCCcEEEEEeCCCcEEEE--ecCCCeE
Q 023672          191 G-YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAG--------IMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMEL  257 (279)
Q Consensus       191 ~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~~l~~~~~dg~i~~w--d~~~~~~  257 (279)
                      + .++  .|.+||+.++ . ...   +.   ..+..        .+.+++|+| ++.++++++. +.++||  |+.+++ 
T Consensus       259 ~~~~~~~~l~~~~~~~~-~-~~~---l~---~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-  327 (662)
T 3azo_A          259 TDRTGWWNLHRVDPATG-A-ATQ---LC---RREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-  327 (662)
T ss_dssp             ECTTSSCEEEEECTTTC-C-EEE---SS---CCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred             ECCCCCeEEEEEECCCC-c-eee---cc---cccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-
Confidence            6 677  5666666442 1 111   11   11111        156789999 8899999998 999999  555555 


Q ss_pred             EEEEeecCCCEEEE
Q 023672          258 LYVLHGQEGGVTHV  271 (279)
Q Consensus       258 ~~~~~~~~~~v~~~  271 (279)
                      +..+..+...+..+
T Consensus       328 ~~~l~~~~~~~~~~  341 (662)
T 3azo_A          328 LVDAAGPWTEWAAT  341 (662)
T ss_dssp             EEECCSSCCEEEEE
T ss_pred             EEEecCCCCeEEEE
Confidence            56777777777766

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=2.4e-13  Score=106.46  Aligned_cols=215  Identities=13%  Similarity=0.102  Sum_probs=138.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCc-cccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+++||..+++....     ...++-....+++++|+|+++++...++.|++||..... .......... ..       
T Consensus        70 ~i~~~d~~~g~~~~~-----~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~g-------  136 (329)
T 3fvz_A           70 TILVIDPNNAEILQS-----SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-PG-------  136 (329)
T ss_dssp             CEEEECTTTCCEEEE-----ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-CC-------
T ss_pred             cEEEEECCCCeEEec-----cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-CC-------
Confidence            367788877776432     122455678999999999988888889999999986431 1100000000 00       


Q ss_pred             eeecCCCceEEEEeeCcccccCC-CCcEEEEec-CCCcEEEEECCCCeeeEEEeccCcc-----ccccceeeEEECCC-C
Q 023672          114 LVVTEGESVYDFCWFPHMSASDP-TSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAV-----DEITAAFSVAFNPT-G  185 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~-~  185 (279)
                      ....+-.....       ++++| ++.++++.+ .++.|++|+ .+++.+..+......     .....+..++++|+ +
T Consensus       137 ~~~~~~~~P~~-------ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g  208 (329)
T 3fvz_A          137 SDQNHFCQPTD-------VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD  208 (329)
T ss_dssp             CSTTCCSSEEE-------EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT
T ss_pred             CCccccCCCcE-------EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC
Confidence            00011112333       45688 787777776 689999999 567776666433221     12224789999998 5


Q ss_pred             CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-------eCCCcEEEEecCCCeE
Q 023672          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-------SYSQTSAIYREDNMEL  257 (279)
Q Consensus       186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-------~~dg~i~~wd~~~~~~  257 (279)
                      .++++. .++.|++||..++ +..   ..+..  ..+...+.+++++|  +..+++.       ..+..|++||..+++.
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G-~~~---~~~~~--~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~  280 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTK-EFV---REIKH--ASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI  280 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTC-CEE---EEECC--TTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCE
T ss_pred             EEEEEECCCCEEEEEECCCC-cEE---EEEec--cccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeE
Confidence            655565 8899999999853 222   22211  24456788899998  3333333       2345899999999999


Q ss_pred             EEEEe---ecCCCEEEEEEccCCC
Q 023672          258 LYVLH---GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       258 ~~~~~---~~~~~v~~~~~spdg~  278 (279)
                      +..+.   .+...+.+++++|||+
T Consensus       281 ~~~~~~~~~~~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          281 IDVFKPVRKHFDMPHDIVASEDGT  304 (329)
T ss_dssp             EEEECCSSSCCSSEEEEEECTTSE
T ss_pred             EEEEcCCCCccCCeeEEEECCCCC
Confidence            98884   5666799999999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=3.9e-13  Score=103.60  Aligned_cols=200  Identities=11%  Similarity=0.051  Sum_probs=128.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+..|+..++ . .      .+..+...+.+++++|+|+++++...++.|.+||..++.....                .
T Consensus        51 ~i~~~~~~~~-~-~------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~----------------~  106 (296)
T 3e5z_A           51 RTWAWSDDGQ-L-S------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI----------------A  106 (296)
T ss_dssp             EEEEEETTSC-E-E------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE----------------E
T ss_pred             EEEEEECCCC-e-E------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE----------------e
Confidence            3455665554 2 1      2334567799999999999887777778999999976543110                0


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEE----ec-------------CCCcEEEEECCCCeeeEEEeccCcccccccee
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFAS----TT-------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAF  177 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s----~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  177 (279)
                      .......    .-.|..++++|+|+++++    ++             ..+.|..++.. ++.. .+.....     .+.
T Consensus       107 ~~~~~~~----~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~-----~~~  175 (296)
T 3e5z_A          107 DSFEGKK----LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV-----KPN  175 (296)
T ss_dssp             CEETTEE----CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS-----SEE
T ss_pred             eccCCCC----CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC-----CCc
Confidence            0000000    012333456889988887    33             13456666654 4433 2322222     567


Q ss_pred             eEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       178 ~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      .++|+|+++.+++. .++.|.+||+...+........+    ..+...+..+++++ +|.++++.  ++.|.+||.. ++
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF----TVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE----CCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SC
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe----eCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CC
Confidence            89999999988655 77899999997322220111122    12345567899999 88777666  7889999986 78


Q ss_pred             EEEEEeecCCCEEEEEE-ccCCC
Q 023672          257 LLYVLHGQEGGVTHVSK-LSSAY  278 (279)
Q Consensus       257 ~~~~~~~~~~~v~~~~~-spdg~  278 (279)
                      .+..+..+.. +.+++| +|||+
T Consensus       248 ~~~~~~~~~~-~~~~~f~~~d~~  269 (296)
T 3e5z_A          248 ELGRVLTPQT-TSNLCFGGPEGR  269 (296)
T ss_dssp             EEEEEECSSC-CCEEEEESTTSC
T ss_pred             EEEEEECCCC-ceeEEEECCCCC
Confidence            8888887777 899999 58875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=3.2e-13  Score=104.12  Aligned_cols=186  Identities=12%  Similarity=0.141  Sum_probs=124.2

Q ss_pred             ccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+..+.....+++|+|+++ +++++..++.|..|+..++ ..                  ........+..+.+      
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~------------------~~~~~~~~~~~l~~------   76 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS------------------PEMHPSHHQNGHCL------   76 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE------------------EEESSCSSEEEEEE------
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE------------------EEECCCCCcceeeE------
Confidence            3334556688999999998 7778888999999998864 11                  11122334555544      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE----ec--------------CCe
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GY--------------NKS  195 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~--------------d~~  195 (279)
                       +++++++++...++.|.+||..+++.......... .....+..++++|+|+++++    |.              .+.
T Consensus        77 -~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           77 -NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             -CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             -CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence             88898888877778999999988875444332211 11124678999999998885    31              234


Q ss_pred             EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC-CCeE---EEEEeecCCCEEEE
Q 023672          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMEL---LYVLHGQEGGVTHV  271 (279)
Q Consensus       196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~-~~~~---~~~~~~~~~~v~~~  271 (279)
                      |..++..  +. ..   .+    ..+...+..++|+| ++..|++.+.++.|++||+. ++..   ...+..+...+.++
T Consensus       155 l~~~~~~--g~-~~---~~----~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i  223 (296)
T 3e5z_A          155 VFRLAPD--GT-LS---AP----IRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL  223 (296)
T ss_dssp             EEEECTT--SC-EE---EE----ECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred             EEEECCC--CC-EE---Ee----ecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence            5555443  11 11   11    23345578999999 78777888888999999997 5554   23333345567789


Q ss_pred             EEccCCC
Q 023672          272 SKLSSAY  278 (279)
Q Consensus       272 ~~spdg~  278 (279)
                      +++++|+
T Consensus       224 ~~d~~G~  230 (296)
T 3e5z_A          224 RVDAGGL  230 (296)
T ss_dssp             EEBTTSC
T ss_pred             EECCCCC
Confidence            9999886

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=3.8e-14  Score=121.30  Aligned_cols=193  Identities=11%  Similarity=0.079  Sum_probs=119.6

Q ss_pred             ccCCCCCceE---------EEEEc--cCCCe-EEEeeC-CCeEEEEeCC--C-CccccccccccccCCCCcccceeeecC
Q 023672           55 TSSIPNNFLK---------GIKWS--PDGSS-FLTSSE-DKTLRIFSLP--E-NGISYDVNACSLAKDQDSYEASLVVTE  118 (279)
Q Consensus        55 ~~~~h~~~v~---------~~~~~--~~~~~-l~t~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (279)
                      .+..|...+.         ...|+  |||++ |+.++. +..|.++++.  + +... .....            ....+
T Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~------------~~~~~  128 (662)
T 3azo_A           62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPV------------SAVGG  128 (662)
T ss_dssp             ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCC------------CCSTT
T ss_pred             eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCC------------ccCCC
Confidence            4555655555         56665  99998 776554 5566666665  2 2210 00000            00002


Q ss_pred             CCceEEEEeeCcccccCCCCcEEEEecCC----------CcEEEEECCC------CeeeEEEe-ccCccccccceeeEEE
Q 023672          119 GESVYDFCWFPHMSASDPTSCVFASTTRD----------HPIHLWDATT------GLLRCTYR-AYDAVDEITAAFSVAF  181 (279)
Q Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----------~~i~i~d~~~------~~~~~~~~-~~~~~~~~~~v~~~~~  181 (279)
                      ...+..++|       +|||+.|++++.+          ..|.+||+.+      ++.. .+. .+..     .+..++|
T Consensus       129 ~~~~~~~~~-------spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~-----~~~~~~~  195 (662)
T 3azo_A          129 GLRWADPVL-------LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHR-----FVTGPRL  195 (662)
T ss_dssp             CEEEEEEEE-------ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSS-----EECCCEE
T ss_pred             CccccCcEE-------CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCC-----cccCceE
Confidence            335566666       7899999988876          5899999988      5543 333 2222     6778999


Q ss_pred             CCCCCEEE-EecC--------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC--cEEEE
Q 023672          182 NPTGTKIF-AGYN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIY  250 (279)
Q Consensus       182 ~~~~~~l~-~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg--~i~~w  250 (279)
                      +|||+.|+ ++.+        ..|++||+...+.. .....+.   .++...+..+.|+| ++.++++++.++  .|++|
T Consensus       196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~~~~~l~---~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-ADTRTLL---GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRV  270 (662)
T ss_dssp             CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-EEEEEEE---EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEE
T ss_pred             CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-cccEEeC---CCCCceEcceEECC-CCeEEEEECCCCCeEEEEE
Confidence            99999998 4433        37999999832211 1111221   24456789999999 777888888888  56677


Q ss_pred             ecCCCeEEEEEeecCCC--------EEEEEEccCCC
Q 023672          251 REDNMELLYVLHGQEGG--------VTHVSKLSSAY  278 (279)
Q Consensus       251 d~~~~~~~~~~~~~~~~--------v~~~~~spdg~  278 (279)
                      |+.+++.......+...        +..++|+|+|+
T Consensus       271 ~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~  306 (662)
T 3azo_A          271 DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL  306 (662)
T ss_dssp             CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred             ECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence            77677654433333221        56788888875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=1.1e-12  Score=100.01  Aligned_cols=200  Identities=9%  Similarity=0.029  Sum_probs=139.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCC-CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPN-NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||..+++.+..      +..+. ..+.+++++|+|++|+  +.++.|..||. +++.....               
T Consensus        16 ~v~~~d~~tG~~~w~------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~---------------   71 (276)
T 3no2_A           16 KIAIINKDTKEIVWE------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI---------------   71 (276)
T ss_dssp             EEEEEETTTTEEEEE------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE---------------
T ss_pred             EEEEEECCCCeEEEE------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE---------------
Confidence            577899988888763      22333 4688999999999888  34778999998 55443221               


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCcc-ccccceeeEEECCCCCEEEEe
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~  191 (279)
                       .......+.++.       +.++|+++++.+. ++.|..+|. +++.+..+...... .....+..+.+.++|+++++.
T Consensus        72 -~~~~~~~~~~~~-------~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           72 -AAPAGCEMQTAR-------ILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             -ECCTTCEEEEEE-------ECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             -cCCCCccccccE-------ECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence             111122344444       3789999998877 777888885 68877777643221 111245567889999999877


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-----
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----  265 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----  265 (279)
                       .++.|..||.. + +   .+..+..     ...+.++...+ ++.++++++.++.|..+|..+|+.+.++..+.     
T Consensus       143 ~~~~~v~~~d~~-G-~---~~w~~~~-----~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          143 FATSEVREIAPN-G-Q---LLNSVKL-----SGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             TTTTEEEEECTT-S-C---EEEEEEC-----SSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             cCCCEEEEECCC-C-C---EEEEEEC-----CCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence             89999999987 4 2   2233321     13455678888 88999998888899999999999998887442     


Q ss_pred             -CCEEEEEEccCCC
Q 023672          266 -GGVTHVSKLSSAY  278 (279)
Q Consensus       266 -~~v~~~~~spdg~  278 (279)
                       ..+.+++..++|.
T Consensus       212 l~~~~~~~~~~~G~  225 (276)
T 3no2_A          212 LFFVAQLFPLQNGG  225 (276)
T ss_dssp             CSEEEEEEECTTSC
T ss_pred             ccccccceEcCCCC
Confidence             1267777777775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.60  E-value=4.5e-13  Score=102.70  Aligned_cols=191  Identities=9%  Similarity=0.120  Sum_probs=128.0

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ..++-....+++++++++++++...++.|.+||.... .........           ....+...+..+++.      .
T Consensus        25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~-----------~~~~~~~~p~~i~~~------~   86 (286)
T 1q7f_A           25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECG-----------KRDSQLLYPNRVAVV------R   86 (286)
T ss_dssp             STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBS-----------SSTTCBSSEEEEEEE------T
T ss_pred             CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccC-----------CCcccccCceEEEEE------c
Confidence            4456677999999999998888888999999998732 211100000           000011233444331      4


Q ss_pred             CCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       136 ~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +++.++++... ++.|.+|| .+++.+..+.....    ..+.+++++|+++++++. .++.|.+||...  ....   .
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~---~  156 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL----QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLH---K  156 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC----SCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEE---E
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC----CCceEEEEeCCCCEEEEECCCCEEEEEcCCC--CEEE---E
Confidence            56766666543 78999999 56776666543221    257899999999877776 788999999653  2222   2


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec--CCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~spdg~  278 (279)
                      +..  ..+...+..++++| ++.++++...++.|++||. +++.+..+..+  ...+.+++++|+|+
T Consensus       157 ~~~--~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~  219 (286)
T 1q7f_A          157 FGC--SKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE  219 (286)
T ss_dssp             EEC--TTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred             eCC--CCccCCcEEEEECC-CCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC
Confidence            210  13345688999999 8888888888999999997 56666666543  35789999999985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=9.3e-13  Score=103.11  Aligned_cols=190  Identities=13%  Similarity=0.147  Sum_probs=126.8

Q ss_pred             CceEEEEEccCCCeEEEeeCC------------------------CeEEEEeCCCCccccccccccccCCCCcccceeee
Q 023672           61 NFLKGIKWSPDGSSFLTSSED------------------------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV  116 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (279)
                      +.+.+++++|+|+++++.+.+                        ++|.+||..++.....                ...
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------~~~   87 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------SGK   87 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE----------------ECT
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec----------------cCC
Confidence            569999999999988888777                        3677777765543110                000


Q ss_pred             cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCc----cccccceeeEEECC-CCCEEEE
Q 023672          117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDA----VDEITAAFSVAFNP-TGTKIFA  190 (279)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~  190 (279)
                      ..-..       |..++++++++++++...++.|++||..... .+..+.....    ......+..++++| ++.++++
T Consensus        88 ~~~~~-------p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A           88 NLFYL-------PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             TTCSS-------EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred             CccCC-------ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence            11112       3334568899988888889999999986542 4444432111    11222578999999 7877776


Q ss_pred             e--cCCeEEEEEccCCCCceeeeeecccc---cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee--
Q 023672          191 G--YNKSVRVFDVHRPGRDFEKYSTLKGN---KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--  263 (279)
Q Consensus       191 ~--~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--  263 (279)
                      .  .++.|++||..  +.....+......   ..++-..+..++++|+++.++++...++.|++||..+++.+..+..  
T Consensus       161 d~~~~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~  238 (329)
T 3fvz_A          161 DGYCNSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS  238 (329)
T ss_dssp             ECSSCCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred             eCCCCCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence            5  48999999954  2222221111000   0122345889999993388888888999999999998998888853  


Q ss_pred             cCCCEEEEEEcc
Q 023672          264 QEGGVTHVSKLS  275 (279)
Q Consensus       264 ~~~~v~~~~~sp  275 (279)
                      +...+.+++|+|
T Consensus       239 ~~~~~~~~~~~p  250 (329)
T 3fvz_A          239 FGRNVFAISYIP  250 (329)
T ss_dssp             TTTCEEEEEEET
T ss_pred             cCCCcceeeecC
Confidence            456788999998

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.59  E-value=5e-14  Score=111.29  Aligned_cols=178  Identities=12%  Similarity=0.061  Sum_probs=124.1

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .++.+++++...++++|+.++ +.+|++..........       .............. |+.++|         ++.+|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~-------~~~~~~~~~~~lp~-V~~l~f---------d~~~L  100 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD-------STPLTFKWEKEIPD-VIFVCF---------HGDQV  100 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS-------SCCCCCSEEEECTT-EEEEEE---------ETTEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc-------cccccceEEeeCCC-eeEEEE---------CCCEE
Confidence            689999999999999999885 5669976432100000       00011112223334 777765         67889


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  221 (279)
                      +++ .++.|++||+++.........+..     .+.++.+.+.. ++++..||.+.+||+..+. . .   .       +
T Consensus       101 ~v~-~~~~l~v~dv~sl~~~~~~~~~~~-----~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~-~-~---~-------~  161 (388)
T 1xip_A          101 LVS-TRNALYSLDLEELSEFRTVTSFEK-----PVFQLKNVNNT-LVILNSVNDLSALDLRTKS-T-K---Q-------L  161 (388)
T ss_dssp             EEE-ESSEEEEEESSSTTCEEEEEECSS-----CEEEEEECSSE-EEEEETTSEEEEEETTTCC-E-E---E-------E
T ss_pred             EEE-cCCcEEEEEchhhhccCccceeec-----ceeeEEecCCC-EEEEECCCCEEEEEccCCc-c-c---c-------c
Confidence            888 789999999987765555555544     56777776553 3335599999999998632 1 1   1       2


Q ss_pred             CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE--EEEE------e---ecCCCEEEEEEccCCCC
Q 023672          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVL------H---GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~spdg~~  279 (279)
                      ...|++++||| .|  ++.|..||++++|+...++.  ..++      .   +|...|.++.|.++++|
T Consensus       162 ~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f  227 (388)
T 1xip_A          162 AQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF  227 (388)
T ss_dssp             EESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred             cCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence            34699999999 77  67889999999999888775  5666      2   36778999999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=2.1e-12  Score=107.79  Aligned_cols=208  Identities=10%  Similarity=0.046  Sum_probs=132.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCC--CCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+.++|..+++.+..      +. ....+..+.|+|||+++++++.|+.|.+||+.  +++...                
T Consensus       178 ~V~viD~~t~~v~~~------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~----------------  234 (567)
T 1qks_A          178 QIALIDGSTYEIKTV------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA----------------  234 (567)
T ss_dssp             EEEEEETTTCCEEEE------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE----------------
T ss_pred             eEEEEECCCCeEEEE------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE----------------
Confidence            456677777766542      22 12346789999999999999999999999995  432211                


Q ss_pred             eeeecCCCceEEEEeeCcccccC----CCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCcc--------c--------
Q 023672          113 SLVVTEGESVYDFCWFPHMSASD----PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV--------D--------  171 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~----~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~--------~--------  171 (279)
                        ....+..       |..++++    |+|+++++++. ++.|.++|..+.+.+..+......        .        
T Consensus       235 --~i~~G~~-------P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          235 --EIKIGSE-------ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             --EEECCSE-------EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             --EEecCCC-------CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence              1111222       2334557    58888777654 578899998888777665532100        0        


Q ss_pred             ----------------------------------cccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecc
Q 023672          172 ----------------------------------EITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       172 ----------------------------------~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                                                        .......+.|+|++++++ +. .++.|.++|+.++ +   ....+.
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-k---l~~~i~  381 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-K---LVAIED  381 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-E---EEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-c---EEEEEe
Confidence                                              001233568999999887 44 7899999999984 2   222222


Q ss_pred             c-ccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCC-------CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          216 G-NKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDN-------MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       216 ~-~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      . ....|.+.-..+ ++|+.+.+++++. .++.|.++|..+       .+.+.++......-..+..+|||++
T Consensus       382 vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~  453 (567)
T 1qks_A          382 TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY  453 (567)
T ss_dssp             CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred             ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence            2 123444322222 5783366666654 468999999987       6788888865444355778999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=6.8e-13  Score=114.47  Aligned_cols=184  Identities=11%  Similarity=0.013  Sum_probs=116.8

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCC-----eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDK-----TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +|...+..++|||||++||.++.++     .|++||+.+++....                 .... ..+..+.|     
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------------~~~~-~~~~~~~w-----  178 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------------VLER-VKFSCMAW-----  178 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------EEEE-ECSCCEEE-----
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------cccC-cccceEEE-----
Confidence            4555789999999999998665533     899999997654211                 0101 11334444     


Q ss_pred             ccCCCCcEEEEecCCCc----------------EEEEECCCCeee--EEEeccCccccccceeeEEECCCCCEEEE-ec-
Q 023672          133 ASDPTSCVFASTTRDHP----------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-  192 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~----------------i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-  192 (279)
                        +|||+.|+.++.++.                |++|++.+++..  ..+.....   ...+..+.|+|+|++|+. +. 
T Consensus       179 --spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~---~~~~~~~~~SpDg~~l~~~~~~  253 (710)
T 2xdw_A          179 --THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE---PKWMGGAELSDDGRYVLLSIRE  253 (710)
T ss_dssp             --CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC---TTCEEEEEECTTSCEEEEEEEC
T ss_pred             --EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC---CeEEEEEEEcCCCCEEEEEEEc
Confidence              889999998887765                999999887632  22222111   114678999999998883 33 


Q ss_pred             ----CCeEEEEEccC------CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-C---CcEEEEecCCCeE-
Q 023672          193 ----NKSVRVFDVHR------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S---QTSAIYREDNMEL-  257 (279)
Q Consensus       193 ----d~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-d---g~i~~wd~~~~~~-  257 (279)
                          +..|++||+.+      +......   +    ..+...+.. .|+| ++..|+..+. +   +.|.+||+.++.. 
T Consensus       254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~---l----~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~  324 (710)
T 2xdw_A          254 GCDPVNRLWYCDLQQESNGITGILKWVK---L----IDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEES  324 (710)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEE---E----ECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             cCCCccEEEEEECcccccccCCccceEE---e----eCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence                57899999975      2212222   2    223333443 5888 5555554443 2   3699999987742 


Q ss_pred             -EEEEeecCC--CEEEEEEccCCC
Q 023672          258 -LYVLHGQEG--GVTHVSKLSSAY  278 (279)
Q Consensus       258 -~~~~~~~~~--~v~~~~~spdg~  278 (279)
                       ...+..|..  .+.+++|+++++
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~  348 (710)
T 2xdw_A          325 KWKVLVPEHEKDVLEWVACVRSNF  348 (710)
T ss_dssp             GCEEEECCCSSCEEEEEEEETTTE
T ss_pred             cceeccCCCCCCeEEEEEEEcCCE
Confidence             344554543  688899986653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.55  E-value=1.1e-13  Score=110.85  Aligned_cols=212  Identities=10%  Similarity=0.007  Sum_probs=123.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc--
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA--  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--  112 (279)
                      .++++|+.+++...      ...++......+.|+|||++|+.++.++.|.+||+.++.........      .....  
T Consensus        61 ~l~~~d~~~~~~~~------l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~g  128 (396)
T 3c5m_A           61 NYYLLNLETQQAVQ------LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD------EEWKGYG  128 (396)
T ss_dssp             EEEEEETTTTEEEE------CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC------TTEEEEE
T ss_pred             eEEEEECCCCcEEE------eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc------cccCCCC
Confidence            35666776655432      22223333334789999999999999999999999876432111000      00000  


Q ss_pred             -eeeecCCCceEEEEeeCcccccCCCCcEEEEe-----cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-CC
Q 023672          113 -SLVVTEGESVYDFCWFPHMSASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TG  185 (279)
Q Consensus       113 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  185 (279)
                       .+..........  .......++|+++.++.+     ..+..|.+||+.+++....... ..     .+..+.|+| ++
T Consensus       129 ~~l~~~~~~~~~~--~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-~~-----~~~~~~~sp~dg  200 (396)
T 3c5m_A          129 TWVANSDCTKLVG--IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD-TA-----WLGHPIYRPFDD  200 (396)
T ss_dssp             EEEECTTSSEEEE--EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE-SS-----CEEEEEEETTEE
T ss_pred             CEEEeccCCcccc--ccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC-Cc-----ccccceECCCCC
Confidence             000000000000  000123568888877765     3567899999998876555432 22     678899999 78


Q ss_pred             CEEE-EecC------CeEEEEEccCCCCceeeeeecccccCCC-CCceEEEEEccCCCcEEEEEeCC-----CcEEEEec
Q 023672          186 TKIF-AGYN------KSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYRE  252 (279)
Q Consensus       186 ~~l~-~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~  252 (279)
                      ..|+ ++.+      ..|.+||+... . .   ..+.   ... ...+..++|+| ++..|+.++.+     +.|++||+
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~---~~l~---~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          201 STVGFCHEGPHDLVDARMWLVNEDGS-N-V---RKIK---EHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             EEEEEEECSCSSSCSCCCEEEETTSC-C-C---EESS---CCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECT
T ss_pred             CEEEEEecCCCCCCCceEEEEECCCC-c-e---eEee---ccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEEC
Confidence            7666 4322      46888888652 1 1   1121   111 23577899999 77776666543     44999999


Q ss_pred             CCCeEEEEEeecCCCEEEEEEcc-CCC
Q 023672          253 DNMELLYVLHGQEGGVTHVSKLS-SAY  278 (279)
Q Consensus       253 ~~~~~~~~~~~~~~~v~~~~~sp-dg~  278 (279)
                      .+++...... .. ... +.|+| ||+
T Consensus       272 ~~g~~~~l~~-~~-~~~-~~~s~~dg~  295 (396)
T 3c5m_A          272 ETLENEEVMV-MP-PCS-HLMSNFDGS  295 (396)
T ss_dssp             TTCCEEEEEE-CC-SEE-EEEECSSSS
T ss_pred             CCCCeEEeee-CC-CCC-CCccCCCCc
Confidence            9887543322 22 233 88999 986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.55  E-value=4.1e-14  Score=113.42  Aligned_cols=185  Identities=10%  Similarity=0.080  Sum_probs=114.4

Q ss_pred             CceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ..+.+++|+|||++|+.+...   ..|.+||+.++....                 +..........+       .++|+
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-----------------l~~~~~~~~~~~-------~~spd   91 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-----------------LTEGKGDNTFGG-------FISTD   91 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-----------------CCCSSCBCTTTC-------EECTT
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-----------------eecCCCCccccc-------eECCC
Confidence            347888999999998866543   368888887653211                 101111111112       35899


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCcccccc-cee-------------eEEECCCCCEEEE------ecCCeEE
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT-AAF-------------SVAFNPTGTKIFA------GYNKSVR  197 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~-------------~~~~~~~~~~l~~------~~d~~i~  197 (279)
                      ++.|+.++.++.|.+||+.+++.......+....... .+.             .+.|+|+++.++.      ..+..|+
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence            9999999999999999999887665554333210000 000             0457888887763      3456899


Q ss_pred             EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC------CcEEEEecCCCeEEEEEeec--CCCEE
Q 023672          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYVLHGQ--EGGVT  269 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~--~~~v~  269 (279)
                      +||+.++ .. ..   +    ..+...+..+.|+|+++..|+..+.+      ..|.+||+.+++... +..+  ...+.
T Consensus       172 ~~d~~~g-~~-~~---~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~  241 (396)
T 3c5m_A          172 KVDIETG-EL-EV---I----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCT  241 (396)
T ss_dssp             EEETTTC-CE-EE---E----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEE
T ss_pred             EEECCCC-cE-Ee---e----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCcccc
Confidence            9999873 21 11   1    12345688999999445555554433      368889987665432 3223  22588


Q ss_pred             EEEEccCCCC
Q 023672          270 HVSKLSSAYT  279 (279)
Q Consensus       270 ~~~~spdg~~  279 (279)
                      .++|+|||++
T Consensus       242 ~~~~spdg~~  251 (396)
T 3c5m_A          242 HEFWIPDGSA  251 (396)
T ss_dssp             EEEECTTSSC
T ss_pred             ceEECCCCCE
Confidence            8999999974

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.54  E-value=1.2e-11  Score=95.39  Aligned_cols=186  Identities=12%  Similarity=0.067  Sum_probs=118.9

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...+.+++++++|+++++ . ++.|.+||..++.........             .......+.++       +++|+|+
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~-------------~~~~~~~~~di-------~~d~dG~  110 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVD-------------NDKKNNRFNDG-------KVDPAGR  110 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECC-------------TTCSSEEEEEE-------EECTTSC
T ss_pred             CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecC-------------CCCCCCCCCCE-------EECCCCC
Confidence            467999999999995554 4 567999998865431100000             00011234444       4488898


Q ss_pred             EEEEecCC---------CcEEEEECCC-CeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEcc-CCCC
Q 023672          140 VFASTTRD---------HPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH-RPGR  206 (279)
Q Consensus       140 ~l~s~~~d---------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~-~~~~  206 (279)
                      ++++....         ..-.+|.+.. ++.........      ....++|+|+++.++ +. .++.|.+||+. ..+.
T Consensus       111 l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~------~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~  184 (297)
T 3g4e_A          111 YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVD------ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ  184 (297)
T ss_dssp             EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEES------BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred             EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccc------cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence            76654221         2234554432 33322222111      457899999998776 44 67899999985 2122


Q ss_pred             ce--eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc-cCCC
Q 023672          207 DF--EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL-SSAY  278 (279)
Q Consensus       207 ~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-pdg~  278 (279)
                      ..  +.+..+    ..+...+..+++++ +|.+.++...++.|..||..+++.+..+..+...+++++|. ||++
T Consensus       185 ~~~~~~~~~~----~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          185 ISNRRSVYKL----EKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             EEEEEEEEEC----CGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGC
T ss_pred             ccCcEEEEEC----CCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCC
Confidence            11  111111    22345678899999 88888887778889999999999999998887789999998 8875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=2.5e-12  Score=110.95  Aligned_cols=203  Identities=11%  Similarity=0.038  Sum_probs=132.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCe----------------EEEEeCCCCcccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKT----------------LRIFSLPENGISYDV   98 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~----------------i~iwd~~~~~~~~~~   98 (279)
                      .+++||+.+++....     .+  ....+.+++|+|||+.|+.++.++.                |.+|++.++..... 
T Consensus       152 ~i~v~d~~tg~~~~~-----~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-  223 (710)
T 2xdw_A          152 TIKFMKVDGAKELPD-----VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-  223 (710)
T ss_dssp             EEEEEETTTTEEEEE-----EE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-
T ss_pred             EEEEEECCCCCCCcc-----cc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce-
Confidence            567778877765431     11  1122667999999999998888766                99999976532100 


Q ss_pred             ccccccCCCCcccceeeec--CCCceEEEEeeCcccccCCCCcEEEEecC-----CCcEEEEECCC------Ce-eeEEE
Q 023672           99 NACSLAKDQDSYEASLVVT--EGESVYDFCWFPHMSASDPTSCVFASTTR-----DHPIHLWDATT------GL-LRCTY  164 (279)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~i~d~~~------~~-~~~~~  164 (279)
                                    .+...  +...+..+.|       +|+|++|+.++.     +..|.+||+.+      +. ....+
T Consensus       224 --------------~v~~~~~~~~~~~~~~~-------SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          224 --------------LCAEFPDEPKWMGGAEL-------SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             --------------EEECCTTCTTCEEEEEE-------CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             --------------EEeccCCCCeEEEEEEE-------cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                          01111  1223455555       889998887764     56899999986      43 34444


Q ss_pred             eccCccccccceeeEEECCCCCEEE-Ee-c---CCeEEEEEccCCCCceeeeeecccccCCCC-CceEEEEEccCCCcEE
Q 023672          165 RAYDAVDEITAAFSVAFNPTGTKIF-AG-Y---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGML  238 (279)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l  238 (279)
                      ..+..     .+.. .|+|+|..|+ .+ .   ...|.+||+.++...  ....+.   ..+. ..+..++|++ ++.++
T Consensus       283 ~~~~~-----~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~---~~~~~~~~~~~~~~~-~~~lv  350 (710)
T 2xdw_A          283 IDNFE-----GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLV---PEHEKDVLEWVACVR-SNFLV  350 (710)
T ss_dssp             ECSSS-----SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEE---CCCSSCEEEEEEEET-TTEEE
T ss_pred             eCCCC-----cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--cceecc---CCCCCCeEEEEEEEc-CCEEE
Confidence            44332     3333 5888888776 44 2   347999999864210  111221   1112 3678899998 88899


Q ss_pred             EEEeCCCc--EEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          239 AIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       239 ~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ++...|+.  |++||+.+++.+..+..+.+.+.+++++|+|.
T Consensus       351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (710)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence            99988885  66678778888888888877899999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=5e-12  Score=95.92  Aligned_cols=181  Identities=10%  Similarity=0.001  Sum_probs=119.4

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      +...+.+++++++++++++.. ++.|.+||........                 ...........+       ++++++
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-----------------~~~~~~~~p~~i-------~~~~~g  119 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-----------------LPFDGLNYPEGL-------AVDTQG  119 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-----------------CCCCSCSSEEEE-------EECTTC
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-----------------eecCCcCCCcce-------EECCCC
Confidence            335678999999998666555 8899999987542210                 001111234444       447788


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      .++++...++.|.+|+..+..........     ...+.+++++++++++++. .++.|.+||.... .   .....   
T Consensus       120 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~---~~~~~---  187 (270)
T 1rwi_B          120 AVYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-N---QVVLP---  187 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTCCSCEECCCCS-----CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-C---EEECC---
T ss_pred             CEEEEECCCCEEEEEECCCceeEeecccc-----CCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-c---eEeec---
Confidence            87777777889999976554332211111     1156789999999876666 6789999998763 1   11111   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                       ..+...+.++++++ ++.++++...++.|.+||............+...+.+++++|+|+
T Consensus       188 -~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          188 -FTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             -CSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC
T ss_pred             -ccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC
Confidence             12225688999999 788888877788999999876544332222335689999999985

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=3.9e-12  Score=99.51  Aligned_cols=200  Identities=9%  Similarity=-0.056  Sum_probs=127.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.++|..+++.....      . .......++++++++.+++...++.|.+||..++......                
T Consensus        65 ~v~viD~~t~~~~~~i------~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i----------------  121 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRI------T-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI----------------  121 (328)
T ss_dssp             EEEEEETTTCCEEEEE------E-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE----------------
T ss_pred             EEEEEECcccEEEEEc------C-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE----------------
Confidence            4677888888775532      1 2356789999999854444448999999999876542211                


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      .......-   .-.|..+++ .++..+++.. .++.|.++|+.+++.+..+....      .+..+.++|+|++++++ .
T Consensus       122 ~~g~~~~~---~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~------~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          122 ECPDMDME---SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI------QPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             ECTTCCTT---TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS------CBCCCEECTTSEEEEEBCC
T ss_pred             EcCCcccc---CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC------CccceEEcCCCCEEEEECC
Confidence            11100000   001222333 2344444443 48899999999999888776543      45689999999977765 3


Q ss_pred             C----------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE--E
Q 023672          193 N----------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--V  260 (279)
Q Consensus       193 d----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~--~  260 (279)
                      +          +.|.++|..+.    +....+..   .....+..++++| ++..|+.+..  .|.+||..+++...  .
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~----~v~~~~~~---~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~  261 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETF----TVEKQFKF---KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRPF  261 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTT----EEEEEEEC---CTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred             CccCCccccCCceEEEEECCCC----eEEEEEec---CCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeeee
Confidence            3          78999999873    22222211   1123578999999 7777776654  89999998887532  1


Q ss_pred             EeecCCCEEEEEEccCC
Q 023672          261 LHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       261 ~~~~~~~v~~~~~spdg  277 (279)
                      +......+.+++++|++
T Consensus       262 ~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          262 LEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             BCCCSSCEEEEEECTTT
T ss_pred             ecCCCCceEEEEEcCCC
Confidence            22123568999999954

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=1.1e-11  Score=97.11  Aligned_cols=187  Identities=12%  Similarity=0.051  Sum_probs=121.6

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+..+...+.+++|++++++++++..++.|.+||..++....                 +.......+..+.+       
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-----------------~~~~~~~~~~~i~~-------   94 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-----------------PFVSHKANPAAIKI-------   94 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-----------------EEECSSSSEEEEEE-------
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-----------------EeeCCCCCcceEEE-------
Confidence            445566678999999999988888889999999988654311                 11123345666655       


Q ss_pred             CCCCcEEEEecCC----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEec-------CCeEEEEEccC
Q 023672          135 DPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-------NKSVRVFDVHR  203 (279)
Q Consensus       135 ~~~~~~l~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~~~d~~~  203 (279)
                      +++++++++...+    +.|.+||..++.....+....   ....+.++.++|+|+++++..       .+.|..+|...
T Consensus        95 ~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A           95 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc---cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence            7788888777666    689999998876543333111   112678999999998887653       24555555543


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCC-CeEEEEE-----eecC--CCEEEEEEc
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDN-MELLYVL-----HGQE--GGVTHVSKL  274 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~-~~~~~~~-----~~~~--~~v~~~~~s  274 (279)
                        .....+.       .....+..++|+| ++. ++++.+.++.|.+||+.+ +..+..+     ....  ..+.+++++
T Consensus       172 --~~~~~~~-------~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d  241 (333)
T 2dg1_A          172 --RTVTPII-------QNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  241 (333)
T ss_dssp             --CCEEEEE-------EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             --CEEEEee-------cCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence              1122111       1123478899999 776 455656678999999964 3322211     1111  367889999


Q ss_pred             cCCC
Q 023672          275 SSAY  278 (279)
Q Consensus       275 pdg~  278 (279)
                      ++|+
T Consensus       242 ~~G~  245 (333)
T 2dg1_A          242 SDDN  245 (333)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=1.5e-12  Score=112.02  Aligned_cols=179  Identities=13%  Similarity=0.018  Sum_probs=111.2

Q ss_pred             CCCCceEEEEEccCCCeEE-----EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           58 IPNNFLKGIKWSPDGSSFL-----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~-----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++....                .... ......++      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----------------~~~~-~~~~~~~~------  174 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----------------DVIE-GGKYATPK------  174 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----------------CCBS-CCTTCCCE------
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC----------------cccC-cccccceE------
Confidence            5666799999999999998     455567899999998754200                0000 00113344      


Q ss_pred             ccCCCCcEEEEecCCCc-------------EEEEECCCCeee--EEEeccCccccccceeeEEECCCCCEEEE-ecCC--
Q 023672          133 ASDPTSCVFASTTRDHP-------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK--  194 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~-------------i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~--  194 (279)
                       |+|||+.|+.++.|..             |++|++.++...  ..+....   +...+..+.|+|+|++|+. +.++  
T Consensus       175 -wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~---~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          175 -WTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG---DPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             -ECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC---CTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             -EecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC---CCEEEEEEEECCCCCEEEEEEeCCCC
Confidence             4889999999988776             999999887632  2222211   1125778999999998884 4444  


Q ss_pred             --eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe---CCCcEEEEecCCCeE---EEEEeec-C
Q 023672          195 --SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMEL---LYVLHGQ-E  265 (279)
Q Consensus       195 --~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~~~~~---~~~~~~~-~  265 (279)
                        .|++||..+  .....+       ..+...+....+ + ++.+++.+.   .++.|.+||+.+++.   ...+..+ .
T Consensus       251 ~~~l~~~~~~~--~~~~~l-------~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  319 (695)
T 2bkl_A          251 ENDVYWKRPGE--KDFRLL-------VKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS  319 (695)
T ss_dssp             EEEEEEECTTC--SSCEEE-------EECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred             ceEEEEEcCCC--CceEEe-------ecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence              566665433  222222       122334555566 5 344555554   257899999987753   3333333 4


Q ss_pred             CCEEEEEEc
Q 023672          266 GGVTHVSKL  274 (279)
Q Consensus       266 ~~v~~~~~s  274 (279)
                      ..+.+++|+
T Consensus       320 ~~l~~~~~~  328 (695)
T 2bkl_A          320 ASLLSVSIV  328 (695)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEE
Confidence            457778877

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.51  E-value=2.4e-12  Score=101.37  Aligned_cols=184  Identities=11%  Similarity=0.085  Sum_probs=114.4

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC---Ce--EEEEeCCCCccccccccccccCCC
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED---KT--LRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~--i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      ...+++||+.+++...       +    ..+..++|+|||++|+.++.+   +.  |.+|++.++....           
T Consensus        42 ~~~l~~~d~~~~~~~~-------l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-----------   99 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-------I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-----------   99 (347)
T ss_dssp             EEEEEEEETTTCCEEE-------E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-----------
T ss_pred             cceEEEEeCCCCceEE-------c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-----------
Confidence            4456777777665432       1    458899999999999877654   33  7777777543210           


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCC---------------------------CcEEEEECCCCee
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---------------------------HPIHLWDATTGLL  160 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d---------------------------~~i~i~d~~~~~~  160 (279)
                            +.. ... +..+.|       +|+++.|+.++.+                           ..|.+||+.+++.
T Consensus       100 ------l~~-~~~-~~~~~w-------spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A          100 ------ILE-AKN-IRSLEW-------NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             ------EEE-ESE-EEEEEE-------CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             ------EEc-CCC-ccceeE-------CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence                  111 122 666666       7889888887632                           5689999998876


Q ss_pred             eEEEeccCccccccceeeEEECCCCCEEEEe-cC------C-eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672          161 RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------K-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (279)
                      +..+.. .      .+..+.|+|+| +++++ .+      . ...||.+.+ +. ..   .+.    .+ ..+..+  +|
T Consensus       165 ~~~l~~-~------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~---~l~----~~-~~~~~~--sp  224 (347)
T 2gop_A          165 IEEFEK-P------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-GK-EE---KMF----EK-VSFYAV--DS  224 (347)
T ss_dssp             EEEEEE-E------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-TE-EE---EEE----EE-ESEEEE--EE
T ss_pred             EeeecC-C------CcccccCCCCe-EEEEEecccccccccccccEEEeCC-Cc-eE---Eec----cC-cceeeE--CC
Confidence            444433 1      45689999999 66654 33      2 445555543 22 11   221    12 334444  99


Q ss_pred             CCCcEEEEEeCC--------CcEEEEecCCCeEEEEEeecCCCEEE-EEEccCC
Q 023672          233 THTGMLAIGSYS--------QTSAIYREDNMELLYVLHGQEGGVTH-VSKLSSA  277 (279)
Q Consensus       233 ~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~-~~~spdg  277 (279)
                       +|..|+.++.+        ..|.+||  +++.......+...+.. +.|+ ||
T Consensus       225 -dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          225 -DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             -CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred             -CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence             78777766643        3688888  66654444455667876 8898 76

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=1.2e-11  Score=96.76  Aligned_cols=207  Identities=8%  Similarity=-0.047  Sum_probs=130.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+..+|..+++....................+.+. +++.+++...++.|.+||..+++....                +
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~----------------i   80 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR----------------I   80 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE----------------E
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE----------------c
Confidence            46778888776543210000011122446777774 345555666689999999997654221                1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--c
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--Y  192 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~  192 (279)
                        ........+       ++++++..+++...++.|.+||+.+++....+...........+..+++ .+++++++.  .
T Consensus        81 --~~~~~p~~i-------~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~  150 (328)
T 3dsm_A           81 --TGFTSPRYI-------HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSY  150 (328)
T ss_dssp             --ECCSSEEEE-------EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTT
T ss_pred             --CCCCCCcEE-------EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCC
Confidence              112233444       4466775555554789999999999988877765441111113456777 444444454  3


Q ss_pred             CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC----------CcEEEEecCCCeEEEEEe
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----------QTSAIYREDNMELLYVLH  262 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d----------g~i~~wd~~~~~~~~~~~  262 (279)
                      ++.|.++|+.++    +....+..     ......++++| ++.+++++..+          +.|.++|..+++....+.
T Consensus       151 ~~~v~viD~~t~----~~~~~i~~-----g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          151 QNRILKIDTETD----KVVDELTI-----GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             CCEEEEEETTTT----EEEEEEEC-----SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCC----eEEEEEEc-----CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            899999999874    22222211     12356789999 88877777654          789999999999887776


Q ss_pred             ec-CCCEEEEEEccCCC
Q 023672          263 GQ-EGGVTHVSKLSSAY  278 (279)
Q Consensus       263 ~~-~~~v~~~~~spdg~  278 (279)
                      .. ...+..++|+|||+
T Consensus       221 ~~~g~~p~~la~~~d~~  237 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRD  237 (328)
T ss_dssp             CCTTCCCEEEEECTTSC
T ss_pred             cCCCCCceeEEEecCCC
Confidence            43 23689999999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.48  E-value=4.5e-12  Score=100.44  Aligned_cols=107  Identities=9%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             CCCeEEEee------CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672           71 DGSSFLTSS------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (279)
Q Consensus        71 ~~~~l~t~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  144 (279)
                      +++++++..      .|+.|.+||..+++....                +..         ...| .++++|++++++++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~----------------i~~---------g~~p-~i~~spdg~~lyv~   67 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM----------------VPT---------AFNG-HVQVSNDGKKIYTM   67 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE----------------EEC---------CEEE-EEEECTTSSEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEE----------------ecC---------CCCC-ceEECCCCCEEEEE
Confidence            555555543      478999999887643210                111         1233 45679999999988


Q ss_pred             c----------CCCcEEEEECCCCeeeEEEeccCcc-ccccceeeEEECCCCCEEEEe--c-CCeEEEEEccC
Q 023672          145 T----------RDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHR  203 (279)
Q Consensus       145 ~----------~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~-d~~i~~~d~~~  203 (279)
                      +          .++.|.+||+.+++.+..+...... .....+..++|+|+|++++++  . ++.|.+||+.+
T Consensus        68 ~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A           68 TTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             EEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             EecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence            6          3667999999999888887654211 011146789999999999855  3 68899999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=7.4e-11  Score=91.44  Aligned_cols=210  Identities=12%  Similarity=0.121  Sum_probs=130.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccc-cccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYD-VNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~  112 (279)
                      .+..||..+++......  ....++...+.+++++++ ++++++.. .+.|.+||.. +..... ...            
T Consensus        47 ~i~~~d~~~g~~~~~~~--~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~------------  110 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICK--PEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD------------  110 (314)
T ss_dssp             EEEEECTTTCCEEEEEC--CEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC------------
T ss_pred             EEEEEeCCCCcEEEEEe--cccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc------------
Confidence            46677776665432111  011235567999999999 76555444 4478899987 533110 000            


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCC---------------CcEEEEECCCCeeeEEEeccCcccccccee
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---------------HPIHLWDATTGLLRCTYRAYDAVDEITAAF  177 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  177 (279)
                       ........+..+       +++++++++++...+               +.|..+|.. ++.........      .+.
T Consensus       111 -~~~~~~~~~~~i-------~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~------~~~  175 (314)
T 1pjx_A          111 -SEGRRMQGCNDC-------AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ------FPN  175 (314)
T ss_dssp             -TTSCBCBCCCEE-------EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES------SEE
T ss_pred             -CCCccccCCcCE-------EECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC------Ccc
Confidence             000011223344       457888877776554               567777765 55433322111      457


Q ss_pred             eEEEC----CCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCC-CceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672          178 SVAFN----PTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (279)
Q Consensus       178 ~~~~~----~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~w  250 (279)
                      .++|+    |+++.++ +. .++.|.+||+...+. ......+ .....+. ..+..+++++ ++.++++...++.|.+|
T Consensus       176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~-~~~~~~~-~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-IENKKVW-GHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-EEEEEEE-EECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEE
T ss_pred             eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc-cccceEE-EECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEE
Confidence            88999    9997665 44 678999999872121 1111111 1112333 5678899999 88888887778899999


Q ss_pred             ecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          251 REDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      |..+++.+..+..+...+.+++|+|||+
T Consensus       253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             cCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence            9987887777777777899999999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=5.5e-11  Score=99.26  Aligned_cols=178  Identities=11%  Similarity=-0.045  Sum_probs=123.8

Q ss_pred             ccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCC
Q 023672           69 SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH  148 (279)
Q Consensus        69 ~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  148 (279)
                      ++.+.++++...+++|.++|..+++....                  ...+..+..+       .++|+++++++++.|+
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~------------------i~~g~~p~~v-------~~SpDGr~lyv~~~dg  218 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTV------------------LDTGYAVHIS-------RLSASGRYLFVIGRDG  218 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEE------------------EECSSCEEEE-------EECTTSCEEEEEETTS
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEE------------------EeCCCCccce-------EECCCCCEEEEEcCCC
Confidence            34555677788899999999987654211                  1122233333       5689999999999999


Q ss_pred             cEEEEECC--CCeeeEEEeccCccccccceeeEEEC----CCCCEEEE-e-cCCeEEEEEccCCCCceeeeeecccccC-
Q 023672          149 PIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFN----PTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKE-  219 (279)
Q Consensus       149 ~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~-~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~-  219 (279)
                      .|.+||+.  +++.+..+....      ....++|+    |+|+++++ . .++.+.++|..+ .+....+........ 
T Consensus       219 ~V~viD~~~~t~~~v~~i~~G~------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~  291 (567)
T 1qks_A          219 KVNMIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDE  291 (567)
T ss_dssp             EEEEEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTT
T ss_pred             eEEEEECCCCCCcEeEEEecCC------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEecccccccc
Confidence            99999996  777777776544      45789999    69999884 4 789999999887 333333322111001 


Q ss_pred             --CCCC-ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE--EEEeecCCCEEEEEEccCCCC
Q 023672          220 --GQAG-IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       220 --~~~~-~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~spdg~~  279 (279)
                        .|.. .+..+..++++..+++....+|.|.++|..+.+.+  ..+. ......++.|+|||+|
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~  355 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRY  355 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCE
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCE
Confidence              1222 57788999955667777788899999998776433  2332 3446788999999985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.43  E-value=3.4e-11  Score=91.66  Aligned_cols=172  Identities=11%  Similarity=0.047  Sum_probs=118.9

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      .++.|++++.|+.|.+||.++++.....                .......+.++       +++|+|++++  +.++.|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~----------------~~~~~~~~~~~-------~~~pdG~ilv--s~~~~V   58 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEY----------------PLEKGWECNSV-------AATKAGEILF--SYSKGA   58 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEE----------------ECCTTCCCCEE-------EECTTSCEEE--ECBSEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEe----------------CCCccCCCcCe-------EECCCCCEEE--eCCCCE
Confidence            4578999999999999999887653221                11111123333       4588999888  347789


Q ss_pred             EEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-CCeEEEEEccCCCCceeeeeecccccCCCCCceEEE
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (279)
                      ..||. +++.+..+.....    ..+.++.+.++|+.+++. . ++.+..+|..  ++....... ......+......+
T Consensus        59 ~~~d~-~G~~~W~~~~~~~----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~-~~~~~~~~~~~~~v  130 (276)
T 3no2_A           59 KMITR-DGRELWNIAAPAG----CEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEF-ETGIERPHAQFRQI  130 (276)
T ss_dssp             EEECT-TSCEEEEEECCTT----CEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEE-CCSCSSGGGSCSCC
T ss_pred             EEECC-CCCEEEEEcCCCC----ccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEec-cCCCCcccccccCc
Confidence            99999 8999988886421    157789999999999865 4 6677777753  333332211 11111222345566


Q ss_pred             EEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       229 ~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ++.+ ++.++++...++.|..||.. |+.+.++... ..+.++.+.++|+
T Consensus       131 ~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~  177 (276)
T 3no2_A          131 NKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD  177 (276)
T ss_dssp             EECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC
T ss_pred             eECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC
Confidence            7889 89999999999999999987 9998888754 3456677777775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=2.2e-10  Score=90.95  Aligned_cols=205  Identities=10%  Similarity=-0.011  Sum_probs=117.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .+.++|..+++...      .+.....+  .++++|||++|+++.          .++.|.+||..+.+.....      
T Consensus        48 ~v~v~D~~t~~~~~------~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i------  113 (373)
T 2mad_H           48 QQWVLDAGSGSILG------HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI------  113 (373)
T ss_pred             EEEEEECCCCeEEE------EecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEE------
Confidence            45777777776543      22222233  899999999998875          3678999999865432211      


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC--CCcEEEEECCCCeeeEE-EeccCccccccceeeEEE
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAF  181 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~  181 (279)
                                ......... ..-.|..++++|+|++|+++..  ++.|.++| .+++.+.. +....         ++.+
T Consensus       114 ----------~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---------~~~~  172 (373)
T 2mad_H          114 ----------ELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---------CYHI  172 (373)
T ss_pred             ----------ECCCccccc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---------eEEE
Confidence                      110000000 0012445577999999998874  47899999 99988777 55432         1223


Q ss_pred             CCCCCEEE--EecCCeEEEEEc-----------------------------------------------cCCCCceeeee
Q 023672          182 NPTGTKIF--AGYNKSVRVFDV-----------------------------------------------HRPGRDFEKYS  212 (279)
Q Consensus       182 ~~~~~~l~--~~~d~~i~~~d~-----------------------------------------------~~~~~~~~~~~  212 (279)
                      .|++...+  .+.||.+.++|.                                               .....  ....
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--~v~~  250 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--TNKA  250 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--eEee
Confidence            33332111  224444444444                                               22100  0000


Q ss_pred             ecccc------cCCCCCceEEEEEccCCCcEEEEEeC----------CCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          213 TLKGN------KEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       213 ~~~~~------~~~~~~~v~~~~~sp~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .+...      ..-.......+.++| ++..|+.+..          ++.|.++|+.+++.+.++.. .....+++|+||
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~D  328 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQD  328 (373)
T ss_pred             eeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCC
Confidence            00000      000012233477888 5555555432          35799999999999998864 345799999999


Q ss_pred             CC
Q 023672          277 AY  278 (279)
Q Consensus       277 g~  278 (279)
                      |+
T Consensus       329 g~  330 (373)
T 2mad_H          329 GG  330 (373)
T ss_pred             CC
Confidence            97

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.41  E-value=5.6e-11  Score=90.11  Aligned_cols=178  Identities=8%  Similarity=0.014  Sum_probs=115.9

Q ss_pred             ceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ...++++++++++++ +.+.++.|.+|+..+.....                 .......       .|..+++++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~-------~p~~i~~~~~g~l   80 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-----------------LPFNGLY-------QPQGLAVDGAGTV   80 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-----------------CCCCSCC-------SCCCEEECTTCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-----------------EeeCCcC-------CcceeEECCCCCE
Confidence            678999999998776 54778999999876432100                 0001111       2334456888886


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccC
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      +++.. ++.|.+||...... ..+....    ...+..++++++|+++++. .++.|.+|+..+. ..  .. ..    .
T Consensus        81 ~v~~~-~~~i~~~d~~~~~~-~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~--~~-~~----~  146 (270)
T 1rwi_B           81 YVTDF-NNRVVTLAAGSNNQ-TVLPFDG----LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-TQ--TV-LP----F  146 (270)
T ss_dssp             EEEET-TTEEEEECTTCSCC-EECCCCS----CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-SC--EE-CC----C
T ss_pred             EEEcC-CCEEEEEeCCCceE-eeeecCC----cCCCcceEECCCCCEEEEECCCCEEEEEECCCc-ee--Ee-ec----c
Confidence            66666 88999999876543 2222111    1267899999999877765 7889999976542 11  11 11    1


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .....+.+++++| ++.++++...++.|.+||............+...+.+++++++|+
T Consensus       147 ~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~  204 (270)
T 1rwi_B          147 TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT  204 (270)
T ss_dssp             CSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC
T ss_pred             ccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC
Confidence            2233577899999 788888777788999999887665433333335789999999884

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=9.1e-10  Score=85.96  Aligned_cols=182  Identities=13%  Similarity=0.084  Sum_probs=115.6

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...+.+++|+++|+++++. .+ .|.+||..++........      .       .......+.++.+       +|+|+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~------~-------~~~~~~~~~~i~~-------d~~G~  146 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL------E-------SDLPGNRSNDGRM-------HPSGA  146 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS------S-------TTCTTEEEEEEEE-------CTTSC
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC------C-------CCCCCCCCCCEEE-------CCCCC
Confidence            3579999999999877654 44 489999876643110000      0       0001123455544       77888


Q ss_pred             EEEEecC------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEcc--CCC-Cce
Q 023672          140 VFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH--RPG-RDF  208 (279)
Q Consensus       140 ~l~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~--~~~-~~~  208 (279)
                      ++++...      .+.|..++  +++...... ...     ....++|+|+++.++ +. .++.|.+||+.  + + ...
T Consensus       147 l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~-----~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~  217 (326)
T 2ghs_A          147 LWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DIS-----IPNSICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTG  217 (326)
T ss_dssp             EEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EES-----SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSS
T ss_pred             EEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCc-----ccCCeEEcCCCCEEEEEECCCCEEEEEEccccc-CCccc
Confidence            7665432      24455556  455433222 111     456899999998776 44 57899999986  3 2 111


Q ss_pred             --eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc-cCCC
Q 023672          209 --EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL-SSAY  278 (279)
Q Consensus       209 --~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-pdg~  278 (279)
                        ..+..+    ......+..+++++ ++.++++...++.|.+||. +++.+..+..+...+++++|+ ||++
T Consensus       218 ~~~~~~~~----~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          218 KAEVFIDS----TGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  284 (326)
T ss_dssp             CCEEEEEC----TTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             CceEEEEC----CCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence              111111    22334577899999 7887777766788999998 677777887777789999998 8875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.40  E-value=6.3e-11  Score=93.35  Aligned_cols=217  Identities=11%  Similarity=0.065  Sum_probs=121.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .+.++|..+.+.+..      +.....+  .++++|||++|++++          .++.|.+||..+.+.....      
T Consensus        60 ~V~ViD~~t~~v~~~------I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I------  125 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGM------IDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI------  125 (386)
T ss_dssp             EEEEEETTTTEEEEE------EEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE------
T ss_pred             EEEEEECCCCeEEEE------EECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEE------
Confidence            455667777666542      2222223  399999999888775          3678999999976543221      


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC--CCcEEEEECCCCeeeEEEeccCcc------------
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAV------------  170 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~------------  170 (279)
                                ....+..+ ...-.|..++++|+|++++++..  ++.|.++|+.+++.+.++......            
T Consensus       126 ----------~v~~g~r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          126 ----------ELPDAPRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  194 (386)
T ss_dssp             ----------EETTCCCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             ----------ECCCcccc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence                      11110000 00113555677888888777753  577888888888776666432110            


Q ss_pred             ------------ccccce----------------eeEEE-CCCCCEEEEecCCeEEEEEccCCCCce-eeeeeccc---c
Q 023672          171 ------------DEITAA----------------FSVAF-NPTGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKG---N  217 (279)
Q Consensus       171 ------------~~~~~v----------------~~~~~-~~~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~---~  217 (279)
                                  .....+                ....| .++|++++++.++.|++.|+....... ..+..+..   .
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence                        000000                01223 244555555556667777765421111 01100000   0


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeC----------CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ..-.......++++| ++..|+....          .+.|.+.|+.+++.+..+..- ..+.+|+|+|||+
T Consensus       275 ~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~  343 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK  343 (386)
T ss_dssp             TTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSS
T ss_pred             ccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCC
Confidence            000112333577788 5555555432          256999999999999888753 3688999999996

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.39  E-value=5.2e-11  Score=93.70  Aligned_cols=182  Identities=9%  Similarity=0.089  Sum_probs=111.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC---------------------------CeEEEE
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED---------------------------KTLRIF   87 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d---------------------------g~i~iw   87 (279)
                      .++++++.+++...       +..+.. +..++|+|||+.|+.++.+                           ..|.+|
T Consensus        86 ~l~~~~~~~g~~~~-------l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (347)
T 2gop_A           86 EIWVADLETLSSKK-------ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF  157 (347)
T ss_dssp             EEEEEETTTTEEEE-------EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred             eEEEEECCCCceEE-------EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence            46667776655432       111223 8999999999999877642                           568888


Q ss_pred             eCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCC-------cEEEEECCCCee
Q 023672           88 SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-------PIHLWDATTGLL  160 (279)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~-------~i~i~d~~~~~~  160 (279)
                      |+.++....                .+..  . .+..+.|       +|++ +++++..+.       ...+|.+.+++.
T Consensus       158 d~~~~~~~~----------------~l~~--~-~~~~~~~-------spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          158 DTESEEVIE----------------EFEK--P-RFSSGIW-------HRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             ETTTTEEEE----------------EEEE--E-TTCEEEE-------ETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             ECCCCeEEe----------------eecC--C-CcccccC-------CCCe-EEEEEecccccccccccccEEEeCCCce
Confidence            887653200                0111  1 4445555       6788 777775542       334444445554


Q ss_pred             eEEEeccCccccccceeeEEECCCCCEEE-EecC--------CeEEEEEccCCCCceeeeeecccccCCCCCceEE-EEE
Q 023672          161 RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA-IAF  230 (279)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~  230 (279)
                      .. +..+ .     .+..+  +|+|+.|+ ++.+        ..|.+||  + +.   .. .+   ...+...+.. +.|
T Consensus       211 ~~-l~~~-~-----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~---~~-~l---~~~~~~~~~~~~~~  271 (347)
T 2gop_A          211 EK-MFEK-V-----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KE---VM-GI---LDEVDRGVGQAKIK  271 (347)
T ss_dssp             EE-EEEE-E-----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SC---EE-ES---STTCCSEEEEEEEE
T ss_pred             EE-eccC-c-----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-Cc---eE-ec---cccCCcccCCccEE
Confidence            33 3222 2     34444  99999887 4432        4688888  3 22   11 11   1345667776 899


Q ss_pred             ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       231 sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      +  ++ ++++++.++.++|| +.+++.. .+..+...|.+++|+|
T Consensus       272 s--dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          272 D--GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             T--TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS
T ss_pred             c--Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC
Confidence            8  45 88999999999999 8866654 3444577899999988

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=2.4e-09  Score=82.15  Aligned_cols=180  Identities=9%  Similarity=0.097  Sum_probs=121.4

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee-cCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      +...+.++++++++.++++...++.|..||.. +....                 +.. .....+..+.       ++++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-----------------~~~~~~~~~~~~i~-------~~~~  109 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE-----------------YTLPNPDSAPYGIT-------EGPN  109 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------EECSSTTCCEEEEE-------ECTT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE-----------------EeCCCcCCCceeeE-------ECCC
Confidence            45679999999999988877778899999876 22100                 010 1223444454       4778


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +.++++...++.|..||. +++.... .....   ...+..++++++++++++. .++.|..||. + +.. ... ..  
T Consensus       110 g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~-~~~-~~--  178 (299)
T 2z2n_A          110 GDIWFTEMNGNRIGRITD-DGKIREY-ELPNK---GSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDI-TEF-KI--  178 (299)
T ss_dssp             SCEEEEETTTTEEEEECT-TCCEEEE-ECSST---TCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCE-EEE-EC--
T ss_pred             CCEEEEecCCceEEEECC-CCCEEEe-cCCCC---CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcE-EEe-eC--
Confidence            888887777889999998 5554322 21111   1267899999999887766 6789999998 4 221 111 11  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~  278 (279)
                        ......+.++++++ ++.++++...++.|.+||. +++.... +..+...+.+++++++|+
T Consensus       179 --~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~  237 (299)
T 2z2n_A          179 --PTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID  237 (299)
T ss_dssp             --SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             --CCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC
Confidence              22344688999999 7888777777889999998 6664332 223446789999999985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=1e-09  Score=84.23  Aligned_cols=184  Identities=13%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      +..+...+.+++++++|+.+++...++.|.+||.. +.....                ........+..+.       ++
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~----------------~~~~~~~~~~~i~-------~~   65 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY----------------PLPTPDAKVMCLT-------IS   65 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE----------------ECSSTTCCEEEEE-------EC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe----------------cCCcccCceeeEE-------EC
Confidence            33455679999999999977776668899999987 432110                0001123444554       47


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeec
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +++.++++...++.|..||.. ++. ..+....   ....+.+++++++++++++. .++.|.+||. ++ .. ... ..
T Consensus        66 ~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~~-~~~-~~  136 (299)
T 2z2n_A           66 SDGEVWFTENAANKIGRITKK-GII-KEYTLPN---PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-KI-REY-EL  136 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCE-EEEECSS---TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-CE-EEE-EC
T ss_pred             CCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---cCCCceeeEECCCCCEEEEecCCceEEEECC-CC-CE-EEe-cC
Confidence            788888877778889999986 432 2332211   11267899999999888776 6789999998 32 21 111 11


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~  278 (279)
                          ......+..+++++ ++.++++...++.|..||. +++.... +......+.++++.++|+
T Consensus       137 ----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~  195 (299)
T 2z2n_A          137 ----PNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA  195 (299)
T ss_dssp             ----SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS
T ss_pred             ----CCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC
Confidence                22345688999999 7888887777789999998 6665432 233345688999999885

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.36  E-value=1.1e-10  Score=101.18  Aligned_cols=179  Identities=12%  Similarity=0.013  Sum_probs=107.1

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCC-----CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +|...+..++|||||++||.++.+     ..|++||+.+++....                 .. ....+..+       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-----------------~~-~~~~~~~~-------  214 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-----------------EL-KWVKFSGL-------  214 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-----------------EE-EEEESCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-----------------cC-CCceeccE-------
Confidence            344468899999999999876543     4699999997654210                 00 00011233       


Q ss_pred             ccCCCCcEEEEecCCCc--------------EEEEECCCCee--eEEEeccCccccccceeeEEECCCCCEEEE-ecC--
Q 023672          133 ASDPTSCVFASTTRDHP--------------IHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN--  193 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~--------------i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d--  193 (279)
                      +|+|| +.|+.++.++.              |++|++.++..  ...+.....   ...+..+.|+|||++|+. +.+  
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~---~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL---PKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC---TTCEEEEEECTTSCEEEEEEECTT
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC---CeEEEEEEECCCCCEEEEEEEccC
Confidence            45888 88888776554              88999987653  222222211   114678999999998883 343  


Q ss_pred             ---CeEEEEEccCCCCc-eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC----CCcEEEEecCCC--eEEEEEee
Q 023672          194 ---KSVRVFDVHRPGRD-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNM--ELLYVLHG  263 (279)
Q Consensus       194 ---~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~----dg~i~~wd~~~~--~~~~~~~~  263 (279)
                         ..|++||+.++... ..   .+    ..+...+... ++| ++..|+..+.    ++.|.+||+.++  +....+..
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~---~l----~~~~~~~~~~-~~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~  361 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVT---AL----IPDLKAQWDF-VDG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE  361 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCE---EE----ECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred             CCcceEEEEECCCCCCcccE---Ee----cCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence               38999999863111 22   22    1222334444 347 5666665554    345999999874  34444444


Q ss_pred             cCCCEEEEEEc
Q 023672          264 QEGGVTHVSKL  274 (279)
Q Consensus       264 ~~~~v~~~~~s  274 (279)
                      +...+.+++|+
T Consensus       362 ~~~~l~~~~~~  372 (741)
T 1yr2_A          362 SKDNLESVGIA  372 (741)
T ss_dssp             CSSEEEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            55556677776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.35  E-value=1.4e-10  Score=99.82  Aligned_cols=203  Identities=10%  Similarity=0.001  Sum_probs=125.8

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCe-------------EEEEeCCCCcccccccc
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKT-------------LRIFSLPENGISYDVNA  100 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~-------------i~iwd~~~~~~~~~~~~  100 (279)
                      ..+++||+.+++.+..    ..+...  ....++|+|||+.|+.++.|..             |++|++.++.....   
T Consensus       147 ~~i~v~dl~tg~~~~~----~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~---  217 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSKV----DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT---  217 (695)
T ss_dssp             CEEEEEETTTCCBCSS----CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE---
T ss_pred             EEEEEEECCCCCCcCC----cccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce---
Confidence            4677888887775410    011111  1267899999999999988776             99999986542100   


Q ss_pred             ccccCCCCcccceeeec--CCCceEEEEeeCcccccCCCCcEEEEecCCC----cEEEEECCCCeeeEEEeccCcccccc
Q 023672          101 CSLAKDQDSYEASLVVT--EGESVYDFCWFPHMSASDPTSCVFASTTRDH----PIHLWDATTGLLRCTYRAYDAVDEIT  174 (279)
Q Consensus       101 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~  174 (279)
                                  .+...  +...+..+.|       +|+|++|+.++.++    .|.+|+..+++... +..+..     
T Consensus       218 ------------lv~~~~~~~~~~~~~~~-------SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~-----  272 (695)
T 2bkl_A          218 ------------VVHERTGDPTTFLQSDL-------SRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVG-----  272 (695)
T ss_dssp             ------------EEECCCCCTTCEEEEEE-------CTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSS-----
T ss_pred             ------------EEEecCCCCEEEEEEEE-------CCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCC-----
Confidence                        01111  2234555655       88999988877665    67777766665433 333332     


Q ss_pred             ceeeEEECCCCCEEEEec----CCeEEEEEccCCCCceeeeeecccccCCC-CCceEEEEEccCCCcEEEEEeCCCcEEE
Q 023672          175 AAFSVAFNPTGTKIFAGY----NKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAI  249 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~  249 (279)
                      .+....+ +++.+++.+.    ++.|.+||+.++...  ....+.   ..+ ...+..++|+  ++.++++...|+..+|
T Consensus       273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~---~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIV---PEDSSASLLSVSIV--GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEE---CCCSSCEEEEEEEE--TTEEEEEEEETTEEEE
T ss_pred             ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEe---cCCCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence            3445556 5666444432    578999999763210  011111   122 4457778887  4678899999999888


Q ss_pred             EecC-CCeEEEEEeec-CCCEEEEEEccCCC
Q 023672          250 YRED-NMELLYVLHGQ-EGGVTHVSKLSSAY  278 (279)
Q Consensus       250 wd~~-~~~~~~~~~~~-~~~v~~~~~spdg~  278 (279)
                      |.+. +++.+..+..+ .+.+.+++++|||.
T Consensus       345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLD  375 (695)
T ss_dssp             EEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred             EEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence            8665 46666666655 56677888888874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.34  E-value=2.6e-10  Score=91.34  Aligned_cols=215  Identities=11%  Similarity=0.047  Sum_probs=123.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .+.++|..+.+....      +..-..+  .++++||+++|+++.          .++.|.++|..+.+....       
T Consensus       100 ~VsVID~~t~~vv~~------I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~-------  164 (426)
T 3c75_H          100 QQFVIDGSTGRILGM------TDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD-------  164 (426)
T ss_dssp             EEEEEETTTTEEEEE------EEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE-------
T ss_pred             eEEEEECCCCEEEEE------EECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE-------
Confidence            355666666665542      2212233  799999999888776          467899999987654222       


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC--CCcEEEEECCCCeeeEEEeccCccc--cccceeeEE
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVA  180 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~  180 (279)
                               +........ ...-.|..++++|++++++++..  ++.|.+.|+.+++.+..+.......  ....-..+.
T Consensus       165 ---------I~v~g~~r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~  234 (426)
T 3c75_H          165 ---------IELPDAPRF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYM  234 (426)
T ss_dssp             ---------EEETTCCCC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             ---------EECCCcccc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEE
Confidence                     111100000 00123666788999999998864  5789999999998887776532100  000000122


Q ss_pred             -------------------------------------ECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc---c--
Q 023672          181 -------------------------------------FNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG---N--  217 (279)
Q Consensus       181 -------------------------------------~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~---~--  217 (279)
                                                           |.+++..++ +...+.+.+.|+....  ......+..   .  
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~--~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG--ATFRAPIEALTEAER  312 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC--EEECCCEESSCTTTG
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc--eEEeeeeeecccccc
Confidence                                                 344443333 3344556666664321  000000000   0  


Q ss_pred             -cCCCCCceEEEEEccCCCcEEEEEeC----------CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          218 -KEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       218 -~~~~~~~v~~~~~sp~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                       ..........++++| ++..++....          ++.|.++|+.+.+.+.++.... ...+++|+|||+
T Consensus       313 ~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~  382 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAE  382 (426)
T ss_dssp             GGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSS
T ss_pred             ccccccCCceeeEEcC-CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCC
Confidence             000011222368999 6555554432          3579999999999999887533 578999999997

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=5.5e-10  Score=89.87  Aligned_cols=185  Identities=11%  Similarity=0.079  Sum_probs=117.4

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .....|+|+++++++++...++.|++||..++....                 +. ....       .|. ++++++++.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-----------------~~-~~~~-------~~~-ia~~~~g~~  184 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-----------------VH-PGFK-------GGK-PAVTKDKQR  184 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-----------------EE-ETCC-------BCB-CEECTTSSE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-----------------ee-ccCC-------CCc-eeEecCCCc
Confidence            467899999999977777778999999998654311                 11 1111       122 455889998


Q ss_pred             EEEecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       141 l~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      |+++..++  .|.+++...+.....+..... .....+.+++++|++..|+.+ .++.|+.||..+..  ......... 
T Consensus       185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~-  260 (409)
T 3hrp_A          185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLEL-  260 (409)
T ss_dssp             EEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCC-
T ss_pred             EEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccc-
Confidence            88888766  788888876654333310000 011266789999954444434 78899999998632  111111100 


Q ss_pred             cCCCCCce--EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC---------------CCEEEEEEccCCC
Q 023672          218 KEGQAGIM--SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------------GGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~~~v--~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------------~~v~~~~~spdg~  278 (279)
                       .++...-  ..++|+|+++.++++-..++.|+.|+....  +..+.++.               ....+++|+|+|+
T Consensus       261 -~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          261 -SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             -CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             -cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence             1222222  389999955777777788889999997543  33444432               3478999999985

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=5.4e-10  Score=86.39  Aligned_cols=182  Identities=8%  Similarity=0.053  Sum_probs=114.5

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      +...+.+++++++|+++++...++.|.+|+.. +.....                .....+..    .-.|..++++++|
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~----------------~~~~~~~~----~~~~~~i~~d~dG  142 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL----------------VGRYAGKR----LNSPNDLIVARDG  142 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE----------------ECEETTEE----CSCCCCEEECTTS
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE----------------EeccCCCc----cCCCCCEEECCCC
Confidence            45678999999999977666666889999875 322100                00000000    0123334568899


Q ss_pred             cEEEE----ecC-------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC------C
Q 023672          139 CVFAS----TTR-------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------K  194 (279)
Q Consensus       139 ~~l~s----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~  194 (279)
                      ++.++    |..             .+.|..+|..+++.....  ...     ....++|+|+++.|+.+ ..      +
T Consensus       143 ~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~-----~p~gl~~spdg~~lyv~~~~~~~~~~~  215 (305)
T 3dr2_A          143 AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD-----HPNGLAFSPDEQTLYVSQTPEQGHGSV  215 (305)
T ss_dssp             CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES-----SEEEEEECTTSSEEEEEECCC---CCC
T ss_pred             CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC-----CCcceEEcCCCCEEEEEecCCcCCCCC
Confidence            88876    332             246778887777654433  111     55789999999977744 43      7


Q ss_pred             eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       195 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      .|.+||+...+  +.....+.   ......+..+++++ +|.+.++ +.+| |.+||. +++.+..+..+. .+.+++|+
T Consensus       216 ~i~~~~~~~~~--l~~~~~~~---~~~~~~pdgi~~d~-~G~lwv~-~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~  285 (305)
T 3dr2_A          216 EITAFAWRDGA--LHDRRHFA---SVPDGLPDGFCVDR-GGWLWSS-SGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFD  285 (305)
T ss_dssp             EEEEEEEETTE--EEEEEEEE---CCSSSCCCSEEECT-TSCEEEC-CSSE-EEEECT-TSCEEEEEECSS-CCCEEEEC
T ss_pred             EEEEEEecCCC--ccCCeEEE---ECCCCCCCeEEECC-CCCEEEe-cCCc-EEEECC-CCCEEEEEECCC-ceeEEEEe
Confidence            89999997632  21111111   11233456789999 7875554 4444 999997 677777777655 58899999


Q ss_pred             cCCC
Q 023672          275 SSAY  278 (279)
Q Consensus       275 pdg~  278 (279)
                      |+++
T Consensus       286 ~d~~  289 (305)
T 3dr2_A          286 QAQQ  289 (305)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            9875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=1.3e-10  Score=91.90  Aligned_cols=139  Identities=12%  Similarity=0.052  Sum_probs=96.2

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      +.+ |+.|+|  |+++|+++ .++.|++||+.+.....                 ....+...+.++.+.      .|  
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~-----------------~~~~~~~~v~~i~~~------~p--  137 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR-----------------TVTSFEKPVFQLKNV------NN--  137 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE-----------------EEEECSSCEEEEEEC------SS--
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC-----------------ccceeecceeeEEec------CC--
Confidence            556 999999  89999998 88999999998643211                 111223346666552      22  


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccc--
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG--  216 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~--  216 (279)
                       .+++++.||.|.+||+.++....    ...     .|.+++|+|+| ..++..||.+++|+.... . .....++..  
T Consensus       138 -~~av~~~dG~L~v~dl~~~~~~~----~~~-----~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~-~-~~~k~~I~~Pp  204 (388)
T 1xip_A          138 -TLVILNSVNDLSALDLRTKSTKQ----LAQ-----NVTSFDVTNSQ-LAVLLKDRSFQSFAWRNG-E-MEKQFEFSLPS  204 (388)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEE----EEE-----SEEEEEECSSE-EEEEETTSCEEEEEEETT-E-EEEEEEECCCH
T ss_pred             -CEEEEECCCCEEEEEccCCcccc----ccC-----CceEEEEcCCc-eEEEEcCCcEEEEcCCCc-c-ccccceecCCc
Confidence             28888999999999999877543    122     78999999999 333449999999988763 1 100112211  


Q ss_pred             cc---CCCCCceEEEEEccCCCcEEEE
Q 023672          217 NK---EGQAGIMSAIAFSPTHTGMLAI  240 (279)
Q Consensus       217 ~~---~~~~~~v~~~~~sp~~~~~l~~  240 (279)
                      ..   .+|...|.++.|.+ ++.++++
T Consensus       205 ~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          205 ELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             HHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             ccccccCCCeeEEEEEEec-CCeEEEE
Confidence            11   14678899999999 8888876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=1.1e-10  Score=100.32  Aligned_cols=184  Identities=10%  Similarity=0.043  Sum_probs=113.7

Q ss_pred             CCCCCceEEEEEccCCCeEEE-----eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           57 SIPNNFLKGIKWSPDGSSFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        57 ~~h~~~v~~~~~~~~~~~l~t-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .+|...+..++|||||++||.     |+.+..|++||+.+++.....               +.   ......+      
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------~~---~~k~~~~------  180 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------------LK---DVKFSGI------  180 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE---------------EE---EEESCCC------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc---------------cC---CceeccE------
Confidence            456678999999999999883     333467999999987532110               00   0001223      


Q ss_pred             cccCCCCcEEEEecCCC-------------cEEEEECCCCee--eEEEeccCccccccceeeEEECCCCCEEEE-e----
Q 023672          132 SASDPTSCVFASTTRDH-------------PIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G----  191 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~-------------~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~----  191 (279)
                       +|+ |++.|+.++.+.             .|++|++.++..  ...+.....  +...+..+.|+|+|++|+. .    
T Consensus       181 -~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          181 -SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA--QHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             -EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG--GCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             -EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC--CCeEEEEEEEcCCCCEEEEEEccCC
Confidence             447 888888887764             399999987653  222322110  1114568899999998863 2    


Q ss_pred             cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeE--EEEEeecCC
Q 023672          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL--LYVLHGQEG  266 (279)
Q Consensus       192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~--~~~~~~~~~  266 (279)
                      .+..|+++|+.++......+       ..+....... ++++++.+++....+   +.|..+|+.++..  ...+..|..
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l-------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  328 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTV-------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ  328 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEE-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             CCcEEEEEECCCCCCceEEE-------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence            23589999998743233322       2223334444 566366666666554   5799999987754  345665666


Q ss_pred             CEEEEEEccCCC
Q 023672          267 GVTHVSKLSSAY  278 (279)
Q Consensus       267 ~v~~~~~spdg~  278 (279)
                      .+.  .|+|+|+
T Consensus       329 ~~~--~~s~~g~  338 (693)
T 3iuj_A          329 QVL--TVHSGSG  338 (693)
T ss_dssp             SCE--EEEEETT
T ss_pred             CEE--EEEEECC
Confidence            555  7888875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.26  E-value=1.2e-09  Score=94.80  Aligned_cols=201  Identities=11%  Similarity=0.071  Sum_probs=123.3

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCe--------------EEEEeCCCCccccccc
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKT--------------LRIFSLPENGISYDVN   99 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~--------------i~iwd~~~~~~~~~~~   99 (279)
                      ..+++||+.+++.+..       ..+...+..++|+|| +.|+.++.|+.              |.+|++.++.....  
T Consensus       189 ~~i~v~dl~tg~~~~~-------~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--  258 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD-------ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ--  258 (741)
T ss_dssp             EEEEEEETTTCCEEEE-------EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE--
T ss_pred             EEEEEEECCCCCCCCc-------cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE--
Confidence            3577888888776431       011112357899999 98988877654              88888875432100  


Q ss_pred             cccccCCCCcccceeeecCC--CceEEEEeeCcccccCCCCcEEEEecCCC-----cEEEEECCCC--eeeEEEeccCcc
Q 023672          100 ACSLAKDQDSYEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDH-----PIHLWDATTG--LLRCTYRAYDAV  170 (279)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~i~d~~~~--~~~~~~~~~~~~  170 (279)
                                   .+.....  ..+..+.|       +|+|++|+..+.++     .|.+||+.++  +....+..+.. 
T Consensus       259 -------------lv~~~~~~~~~~~~~~~-------SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-  317 (741)
T 1yr2_A          259 -------------PVFATPELPKRGHGASV-------SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-  317 (741)
T ss_dssp             -------------EEECCTTCTTCEEEEEE-------CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-
T ss_pred             -------------EEeccCCCCeEEEEEEE-------CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-
Confidence                         0111111  23555555       88999888776543     7999999877  31344433332 


Q ss_pred             ccccceeeEEECCCCCEEE-Eec----CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          171 DEITAAFSVAFNPTGTKIF-AGY----NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~-~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                          .+... ++|+|+.|+ .+.    ++.|.+||+.++....   ..+.   ..+...+..+.|+  ++.++++...|+
T Consensus       318 ----~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~---~~~~~~l~~~~~~--~~~lv~~~~~dg  384 (741)
T 1yr2_A          318 ----AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVV---PESKDNLESVGIA--GNRLFASYIHDA  384 (741)
T ss_dssp             ----SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEE---EEEE---CCCSSEEEEEEEE--BTEEEEEEEETT
T ss_pred             ----ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcccc---EEEe---cCCCCeEEEEEEE--CCEEEEEEEECC
Confidence                33333 348888777 433    4569999987631111   1221   2334456677776  457888888999


Q ss_pred             cEEEEecC-CCeEEEEEeec-CCCEEEEEEccCCC
Q 023672          246 TSAIYRED-NMELLYVLHGQ-EGGVTHVSKLSSAY  278 (279)
Q Consensus       246 ~i~~wd~~-~~~~~~~~~~~-~~~v~~~~~spdg~  278 (279)
                      ..+||.+. +++.+..+..+ .+.+..++++|||+
T Consensus       385 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          385 KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred             EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence            87777654 46666666653 56788999999885

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=9.4e-09  Score=79.10  Aligned_cols=180  Identities=10%  Similarity=0.045  Sum_probs=111.8

Q ss_pred             CceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ..-.+..|+|++ .++++...++.|..||..++...                   .......+..+.+       +++++
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------------~~~~~~~~~~i~~-------~~dG~   66 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-------------------RVTMDAPVSSVAL-------RQSGG   66 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------------------EEECSSCEEEEEE-------BTTSS
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-------------------EEeCCCceEEEEE-------CCCCC
Confidence            345688999955 45566777899999999865321                   1112345555554       77888


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC---------CeEEEEEccCCCCcee
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN---------KSVRVFDVHRPGRDFE  209 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d---------~~i~~~d~~~~~~~~~  209 (279)
                      ++++.  ++.|.+||..+++.......... .....+..++++|+|+++++. ..         ....||.+...+....
T Consensus        67 l~v~~--~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~  143 (297)
T 3g4e_A           67 YVATI--GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK  143 (297)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred             EEEEE--CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence            55543  56799999988875443332211 112257889999999977754 22         3345666654222111


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEec--CCCeEE-----EEEeecCCCEEEEEEccCCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYRE--DNMELL-----YVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~--~~~~~~-----~~~~~~~~~v~~~~~spdg~  278 (279)
                      ..        ........++|+| ++. ++++.+.++.|.+||+  .++...     ..+..+.+.+.++++.++|+
T Consensus       144 ~~--------~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          144 YF--------DQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             EE--------EEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             Ee--------eccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            11        1123467899999 665 5566677889999987  455432     22233345678899998885

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.25  E-value=2.6e-08  Score=76.33  Aligned_cols=180  Identities=11%  Similarity=0.101  Sum_probs=120.1

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee-cCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      +...+.+++++++++++++...++.|..||.. +....                 ... .....+..+       +++++
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~-----------------~~~~~~~~~~~~i-------~~~~~  114 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE-----------------YPLPQPDSGPYGI-------TEGLN  114 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------EECSSTTCCEEEE-------EECST
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE-----------------ecCCCCCCCCccc-------eECCC
Confidence            44678999999999877777668899999987 43210                 000 012234444       44778


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +.++++...++.|..+|.. ++... +....   ....+.++++.++++++++. .++.|..||. + +... .. ..  
T Consensus       115 g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~-~~-~~--  183 (300)
T 2qc5_A          115 GDIWFTQLNGDRIGKLTAD-GTIYE-YDLPN---KGSYPAFITLGSDNALWFTENQNNSIGRITN-T-GKLE-EY-PL--  183 (300)
T ss_dssp             TCEEEEETTTTEEEEECTT-SCEEE-EECSS---TTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEE-EE-EC--
T ss_pred             CCEEEEccCCCeEEEECCC-CCEEE-ccCCC---CCCCceeEEECCCCCEEEEecCCCeEEEECC-C-CcEE-Ee-eC--
Confidence            8888877778899999987 55442 22221   11267899999999966666 5789999998 3 2211 11 11  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~  278 (279)
                        ..+...+..+++++ ++.++++....+.|.+||. +++.... +..+...+.++++.++|+
T Consensus       184 --~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          184 --PTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE  242 (300)
T ss_dssp             --SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             --CCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence              23345688999999 7888777777778999998 5554332 233445789999999885

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=7.6e-09  Score=83.24  Aligned_cols=187  Identities=7%  Similarity=-0.043  Sum_probs=112.5

Q ss_pred             EEEccCCCeEEEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672           66 IKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (279)
Q Consensus        66 ~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  143 (279)
                      ++|+++++.|+++..++  .|.+|+..++........             .......       .|..++++|++..|+.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~-------------~~~~~~~-------~p~~iav~p~~g~lyv  235 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ-------------LGSTFSG-------KIGAVALDETEEWLYF  235 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE-------------CCTTSCS-------CCCBCEECTTSSEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee-------------ccchhcC-------CcEEEEEeCCCCeEEE
Confidence            89999999988888766  788888764321000000             0000111       2344566884445555


Q ss_pred             ecCCCcEEEEECCCCeeeEEEeccCcccccc-cee-eEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecc---c
Q 023672          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEIT-AAF-SVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK---G  216 (279)
Q Consensus       144 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~---~  216 (279)
                      +..++.|..||..++... .+......+... ... .++|+|++..|+ +. .++.|+.|+....   ...+....   .
T Consensus       236 ~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g  311 (409)
T 3hrp_A          236 VDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKT  311 (409)
T ss_dssp             ECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCS
T ss_pred             EECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCC
Confidence            777889999999877532 221110000100 123 899999644444 55 7889999987642   11110000   0


Q ss_pred             cc-----CCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCeEEEEEeec---------------CCCEEEEEEcc
Q 023672          217 NK-----EGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQ---------------EGGVTHVSKLS  275 (279)
Q Consensus       217 ~~-----~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~sp  275 (279)
                      ..     ...-.....++++| ++.++++-. .++.|+.||+.++.. ..+.++               -..+.+++++|
T Consensus       312 ~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          312 VQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             CBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             cCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence            00     01123478999999 788888877 889999999888764 445444               13589999999


Q ss_pred             CCC
Q 023672          276 SAY  278 (279)
Q Consensus       276 dg~  278 (279)
                      +|.
T Consensus       390 ~g~  392 (409)
T 3hrp_A          390 EGG  392 (409)
T ss_dssp             SSE
T ss_pred             CCC
Confidence            874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=7e-10  Score=87.42  Aligned_cols=212  Identities=10%  Similarity=-0.055  Sum_probs=113.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .+.++|..+.+.+..     ...+. .+  .+.++||+++++++.          .+++|.+||+.+++....       
T Consensus        47 ~vsvID~~t~~v~~~-----i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~-------  111 (368)
T 1mda_H           47 ENWVSCAGCGVTLGH-----SLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD-------  111 (368)
T ss_dssp             EEEEEETTTTEEEEE-----EEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE-------
T ss_pred             eEEEEECCCCeEEEE-----EeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE-------
Confidence            455777777776652     22222 34  799999999998876          478999999998754322       


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC--CCcEEE--EECCCCeeeEEEeccCcc--ccccceee
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHL--WDATTGLLRCTYRAYDAV--DEITAAFS  178 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~i--~d~~~~~~~~~~~~~~~~--~~~~~v~~  178 (279)
                               +........ ...-.|..++++|||++++++..  +..|.+  +|+.+   +..+......  .....-.-
T Consensus       112 ---------I~v~~~~~~-~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~  178 (368)
T 1mda_H          112 ---------IELPDAPRF-SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATH  178 (368)
T ss_dssp             ---------EEETTSCSC-CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEE
T ss_pred             ---------EECCCcccc-ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEE
Confidence                     111100000 00023666788999999888864  356888  88866   3333221100  00000000


Q ss_pred             EEECCC-------------------------------------CC-EEEEecCCeEEEEEccCCCCceeeeeecccc---
Q 023672          179 VAFNPT-------------------------------------GT-KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN---  217 (279)
Q Consensus       179 ~~~~~~-------------------------------------~~-~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---  217 (279)
                      +.++++                                     +. +++++. +.+.+.|+......  ....+...   
T Consensus       179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~  255 (368)
T 1mda_H          179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESG  255 (368)
T ss_dssp             ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTH
T ss_pred             EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcce--EEEEEEecccc
Confidence            111122                                     22 222333 55666666431111  11111000   


Q ss_pred             ---cCCCCCceEEEEEccCCCcEEEEEeC---------CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          218 ---KEGQAGIMSAIAFSPTHTGMLAIGSY---------SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       218 ---~~~~~~~v~~~~~sp~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                         ..........++++| ++..++.+..         ++.+.++|+.+++.+..+.... ...+|+|+|||++
T Consensus       256 ~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~  327 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGAS  327 (368)
T ss_dssp             HHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSC
T ss_pred             ccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCE
Confidence               000011122268999 6555554322         2346699999999988887544 5789999999974

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=2.2e-09  Score=84.36  Aligned_cols=200  Identities=13%  Similarity=0.113  Sum_probs=117.9

Q ss_pred             CCCCceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      +|-..+.+++++++++++++-..     ++.|.+||+.+++..........          . ......+..+.      
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~----------~-~~~~~~~~~v~------  126 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP----------I-TLSNSFVNDLA------  126 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT----------T-SCTTCCCCEEE------
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh----------h-cccccccceEE------
Confidence            45678999999999886665433     57899999987653221110000          0 01112234443      


Q ss_pred             ccCCC-CcEEEEec---CCCcEEEEECCCCeeeEEEeccCcc----------c--------------cccceeeEEECCC
Q 023672          133 ASDPT-SCVFASTT---RDHPIHLWDATTGLLRCTYRAYDAV----------D--------------EITAAFSVAFNPT  184 (279)
Q Consensus       133 ~~~~~-~~~l~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~----------~--------------~~~~v~~~~~~~~  184 (279)
                       ++++ +..+++-.   .++.|.+||+.+++....+..+...          +              ....+..|+|+|+
T Consensus       127 -vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d  205 (343)
T 2qe8_A          127 -VDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE  205 (343)
T ss_dssp             -EETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT
T ss_pred             -EecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccC
Confidence             3554 33444444   5788999999988766655321100          0              0013578999999


Q ss_pred             CCEEEEe-c-CCeEEEEEccC--CCCc--eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE
Q 023672          185 GTKIFAG-Y-NKSVRVFDVHR--PGRD--FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (279)
Q Consensus       185 ~~~l~~~-~-d~~i~~~d~~~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~  258 (279)
                      ++.|+.+ . ...+..++...  .+..  .+....+.  ..++......+++++ ++.++++...++.|.+||..+++..
T Consensus       206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE--RYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE--EEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE--ecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEE
Confidence            9888854 3 34555555421  0000  00000000  012233566799999 8899999988999999998667644


Q ss_pred             EEEeec-CCCEEEEEEccCCC
Q 023672          259 YVLHGQ-EGGVTHVSKLSSAY  278 (279)
Q Consensus       259 ~~~~~~-~~~v~~~~~spdg~  278 (279)
                      ...... ...+.+++|.++|+
T Consensus       283 ~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          283 LLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             EEEECGGGSCEEEEEECTTSC
T ss_pred             EEEECCceecCCeeEECCCCc
Confidence            333322 45689999999885

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.20  E-value=8.3e-09  Score=79.84  Aligned_cols=184  Identities=11%  Similarity=0.091  Sum_probs=110.5

Q ss_pred             CceEEEEEccCCCeEEE-------eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           61 NFLKGIKWSPDGSSFLT-------SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ....+++|+++++++++       +..++.|.+||..+++......     .        ........+..+.       
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----~--------~~~~~~~~~~~i~-------   77 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-----P--------EVNGYGGIPAGCQ-------   77 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-----C--------EETTEECCEEEEE-------
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-----c--------ccCCCCCCCceEE-------
Confidence            34689999999988777       6778999999987654311000     0        0000112344454       


Q ss_pred             cCCC-CcEEEEecCCCcEEEEECCCCeeeEE-EeccCccccccceeeEEECCCCCEEEEe-cC---------------Ce
Q 023672          134 SDPT-SCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-YN---------------KS  195 (279)
Q Consensus       134 ~~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d---------------~~  195 (279)
                      ++++ ++++++.. .+.|.+||.. ++.... ...... .....+.+++++++|+++++. .+               +.
T Consensus        78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCC-ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence            4777 66555544 4478899988 664332 211111 111257899999999888765 44               45


Q ss_pred             EEEEEccCCCCceeeeeecccccCCCCCceEEEEEc----cCCCcE-EEEEeCCCcEEEEecC-CCeE-----EEEEeec
Q 023672          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS----PTHTGM-LAIGSYSQTSAIYRED-NMEL-----LYVLHGQ  264 (279)
Q Consensus       196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~~-l~~~~~dg~i~~wd~~-~~~~-----~~~~~~~  264 (279)
                      |..||..  +. ....  .     .+......++|+    | ++.. +++...++.|.+||+. +++.     ...+..+
T Consensus       155 l~~~~~~--g~-~~~~--~-----~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          155 IYCFTTD--GQ-MIQV--D-----TAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             EEEECTT--SC-EEEE--E-----EEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             EEEECCC--CC-EEEe--c-----cCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence            6666654  21 1111  1     112346789999    9 7754 5555668899999986 4542     2233333


Q ss_pred             C-CCEEEEEEccCCC
Q 023672          265 E-GGVTHVSKLSSAY  278 (279)
Q Consensus       265 ~-~~v~~~~~spdg~  278 (279)
                      . ..+.+++++++|+
T Consensus       224 ~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          224 HEGGADGMDFDEDNN  238 (314)
T ss_dssp             SSCEEEEEEEBTTCC
T ss_pred             CCCCCCceEECCCCC
Confidence            3 5678899999885

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.19  E-value=4.1e-08  Score=75.23  Aligned_cols=180  Identities=12%  Similarity=0.127  Sum_probs=120.8

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee-cCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ....+.+++++++|+.+++...++.|.+||.. +....                 +.. .....+..+.       ++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-----------------~~~~~~~~~~~~i~-------~~~~   72 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-----------------FEVPTPDAKVMCLI-------VSSL   72 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------EECSSTTCCEEEEE-------ECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------EECCCCCCcceeEE-------ECCC
Confidence            44578999999999988777778999999987 43211                 000 1112344444       4778


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +.++++...++.|..+|.. ++.. .+.....   ...+.++++.++++++++. .++.|..||.. + .. ... ..  
T Consensus        73 g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~-~~~-~~--  141 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKK-GGFT-EYPLPQP---DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G-TI-YEY-DL--  141 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEE-EEECSST---TCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-CE-EEE-EC--
T ss_pred             CCEEEEecCCCeEEEECCC-CCeE-EecCCCC---CCCCccceECCCCCEEEEccCCCeEEEECCC-C-CE-EEc-cC--
Confidence            8877777778889999987 5543 3322211   1267899999999888776 57899999886 2 11 111 11  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~  278 (279)
                        ......+.++++++ ++.++++...++.|..+|. +++.... +..+...+.++++.++|+
T Consensus       142 --~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~  200 (300)
T 2qc5_A          142 --PNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA  200 (300)
T ss_dssp             --SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS
T ss_pred             --CCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC
Confidence              22345688999999 7887777766788999998 5654432 222345688999999885

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=1.6e-09  Score=89.10  Aligned_cols=123  Identities=11%  Similarity=0.001  Sum_probs=81.3

Q ss_pred             cEEEEECCC--Cee-eEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc----eeeeeecccccC
Q 023672          149 PIHLWDATT--GLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD----FEKYSTLKGNKE  219 (279)
Q Consensus       149 ~i~i~d~~~--~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~----~~~~~~~~~~~~  219 (279)
                      .|.+.|.++  ++. +..+....      ...++.++|||++++ ++ .+..|.++|+.+....    +......... -
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-v  327 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-P  327 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-C
T ss_pred             cEEEEeCcccCCceeEEEEecCC------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-c
Confidence            488888887  444 45555443      567899999999988 45 8899999999852100    0000001001 1


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC----------CeEEEEEeecCCCE-----EEEEEccCCCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----------MELLYVLHGQEGGV-----THVSKLSSAYT  279 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~~~~v-----~~~~~spdg~~  279 (279)
                      .-......++|+| +|...++.-.|+.|.+||+.+          .+.+.++..|-.+-     .++.++|||+|
T Consensus       328 ~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          328 ELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             BCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             CCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence            1134578899999 776666777899999999987          56777887664431     22356788875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=3.4e-11  Score=95.64  Aligned_cols=191  Identities=10%  Similarity=0.049  Sum_probs=95.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .++.||..+++....+..        +.+.+..+..++..+++++.||.|..||..+++........             
T Consensus        20 ~v~a~d~~tG~~~W~~~~--------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-------------   78 (369)
T 2hz6_A           20 SLHAVSKRTGSIKWTLKE--------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-------------   78 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC--------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-------------
T ss_pred             EEEEEECCCCCEEEEecC--------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-------------
Confidence            477889999887753321        23444555567878888889999999999876542211000             


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                         ....+   ...|   .+. .+..+++++.++.|..||..+|+.+..+..+.         ...++|++..++++ .+
T Consensus        79 ---~~~~~---~~sp---~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~d  139 (369)
T 2hz6_A           79 ---IPELV---QASP---CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------ADSLSPSTSLLYLGRTE  139 (369)
T ss_dssp             ---HHHHH---TTCS---CC------CCCCEEEEEEEEECCC-------------------------------EEEEEEE
T ss_pred             ---Ccccc---ccCc---eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---------cccccccCCEEEEEecC
Confidence               00000   0001   111 34467778889999999999999887776543         13445677777755 89


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC---cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCE-E
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT---GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV-T  269 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v-~  269 (279)
                      +.|+.||.+++.......  .    ..    .....+++ +.   ..+++++.||.|+.||.++++.+..... ..++ .
T Consensus       140 g~v~a~d~~tG~~~W~~~--~----~~----~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~  207 (369)
T 2hz6_A          140 YTITMYDTKTRELRWNAT--Y----FD----YAASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVA  207 (369)
T ss_dssp             EEEECCCSSSSSCCCEEE--E----EE----ECCBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEE
T ss_pred             CEEEEEECCCCCEEEeEe--c----cc----ccCccccC-CccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEE
Confidence            999999999853222211  0    01    11122333 21   4567788899999999999998877763 3444 3


Q ss_pred             EEEEccCC
Q 023672          270 HVSKLSSA  277 (279)
Q Consensus       270 ~~~~spdg  277 (279)
                      ...+++||
T Consensus       208 ~~~~~~dg  215 (369)
T 2hz6_A          208 FYVWQREG  215 (369)
T ss_dssp             EEECTTSS
T ss_pred             EEEecCCc
Confidence            45566666

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.15  E-value=1.4e-08  Score=79.14  Aligned_cols=176  Identities=15%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             ceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ...+..|+|++. ++++...++.|..||..++...                   .......+..+.|       ++++++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------------~~~~~~~v~~i~~-------~~dg~l  103 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-------------------VHALPFMGSALAK-------ISDSKQ  103 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------------EEECSSCEEEEEE-------EETTEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------------EEECCCcceEEEE-------eCCCeE
Confidence            356789999754 5566667889999998865321                   1111235666665       567877


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC------CeEEEEEccCCCCceeeeee
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +++. .+ .|.+||..+++.......... .....+..+.++|+|+++++. .+      +.|..++  + +. ...+  
T Consensus       104 ~v~~-~~-gl~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~-~~~~--  174 (326)
T 2ghs_A          104 LIAS-DD-GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GK-VTKL--  174 (326)
T ss_dssp             EEEE-TT-EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TE-EEEE--
T ss_pred             EEEE-CC-CEEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-Cc-EEEe--
Confidence            7654 34 499999988875433222111 111267899999999977754 21      3455555  3 22 1111  


Q ss_pred             cccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecC--CC-eE-----EEEEeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYRED--NM-EL-----LYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .     ........++|+| ++..| ++.+.++.|.+||+.  ++ ..     +..+......+.++++.++|+
T Consensus       175 ~-----~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~  242 (326)
T 2ghs_A          175 F-----ADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  242 (326)
T ss_dssp             E-----EEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             e-----CCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence            1     1123467899999 67654 555667889999986  55 32     222222334567888888875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.15  E-value=8.2e-09  Score=82.21  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=116.4

Q ss_pred             eEEEEEccCCCeEEEeeCC------CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672           63 LKGIKWSPDGSSFLTSSED------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (279)
                      -..+..+|+| .++++..+      |.|.++|..+.+.........              ....--+++.|       +|
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~--------------~~~~~~Yd~~~-------~p  197 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR--------------GDQYLAYDFWW-------NL  197 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC--------------TTCCCCCCEEE-------ET
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC--------------CCccccceEEE-------CC
Confidence            3457788999 66665555      789999998776533221100              00011223444       66


Q ss_pred             CCcEEEEec-------------------CCCcEEEEECCCCeeeEEEeccCccccccceeeEEE--CCCCCEEEEe----
Q 023672          137 TSCVFASTT-------------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----  191 (279)
Q Consensus       137 ~~~~l~s~~-------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~----  191 (279)
                      +++.++++.                   .+.+|.+||+.+++.+.++......   .....+.|  +|++++++++    
T Consensus       198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g---~~P~~i~f~~~Pdg~~aYV~~e~~  274 (462)
T 2ece_A          198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN---RMALELRPLHDPTKLMGFINMVVS  274 (462)
T ss_dssp             TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE---EEEEEEEECSSTTCCEEEEEEEEE
T ss_pred             CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC---CccceeEeeECCCCCEEEEEEeee
Confidence            788887774                   4689999999999888888764211   13445655  9999988743    


Q ss_pred             ---cCCeEEEEEccCCCCceeeeeec--cc-----c-------cCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecC
Q 023672          192 ---YNKSVRVFDVHRPGRDFEKYSTL--KG-----N-------KEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYRED  253 (279)
Q Consensus       192 ---~d~~i~~~d~~~~~~~~~~~~~~--~~-----~-------~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~  253 (279)
                         .++.|.+|.... + .+.....+  ..     .       +.+-...+..+.+|| ++++|.++. ..+.|.+||+.
T Consensus       275 ~~~Lss~V~v~~~d~-g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          275 LKDLSSSIWLWFYED-G-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             TTTCCEEEEEEEEET-T-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECS
T ss_pred             ccCCCceEEEEEecC-C-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEec
Confidence               456888777664 2 12222211  00     0       000023577899999 666666554 47789999985


Q ss_pred             C---CeEEEEEeecC--------------CCEEEEEEccCCCC
Q 023672          254 N---MELLYVLHGQE--------------GGVTHVSKLSSAYT  279 (279)
Q Consensus       254 ~---~~~~~~~~~~~--------------~~v~~~~~spdg~~  279 (279)
                      .   .+++..+....              +....++++|||++
T Consensus       352 d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          352 NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence            3   35565555321              13688999999984

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.14  E-value=7.9e-09  Score=81.49  Aligned_cols=227  Identities=15%  Similarity=0.078  Sum_probs=132.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCC----CCCceEEEEEccCCCeEEEeeC--CCeEEEEeCCCCcccccccc--cc----
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSI----PNNFLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNA--CS----  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~--~~----  102 (279)
                      .+.+||..+.+......   ...+    ....-..++|+|||++|+++..  ++.|.++|+.+++.......  +.    
T Consensus       110 ~VsviD~~t~~v~~~I~---v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P  186 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIE---LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP  186 (386)
T ss_dssp             EEEEECTTTCCEEEEEE---ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             EEEEEECCCCeEEEEEE---CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeec
Confidence            37788988887665321   1110    0123456899999999988764  68999999999876443321  00    


Q ss_pred             ------ccCCCCcccceeeecCCCceEEEE---eeCcc------ccc-CCCCcEEEEecCCCcEEEEECCCCe--eeEEE
Q 023672          103 ------LAKDQDSYEASLVVTEGESVYDFC---WFPHM------SAS-DPTSCVFASTTRDHPIHLWDATTGL--LRCTY  164 (279)
Q Consensus       103 ------~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~------~~~-~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~  164 (279)
                            ...+.+.....+.....+.+....   +.+..      .+| .++|++++ .+.+|.|.+.|+.++.  ....+
T Consensus       187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCE
T ss_pred             CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecce
Confidence                  011122222222222212221111   11110      122 35665555 5558999999997654  33333


Q ss_pred             eccCc-----cccccceeeEEECCCCCEEEEe-c----------CCeEEEEEccCCCCceeeeeecccccCCCCCceEEE
Q 023672          165 RAYDA-----VDEITAAFSVAFNPTGTKIFAG-Y----------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (279)
Q Consensus       165 ~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (279)
                      .....     .-.......+.++|+++.++.. .          .+.|.++|+.+. +.   ...+.-     ...+.++
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-kv---~~~i~v-----g~~~~~l  336 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ER---LAKFEM-----GHEIDSI  336 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CE---EEEEEE-----EEEECEE
T ss_pred             eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-eE---EEEEEC-----CCCcceE
Confidence            21000     0001133457889999888854 2          257999999983 22   222211     1257899


Q ss_pred             EEccCCCc-EEEEE-eCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          229 AFSPTHTG-MLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       229 ~~sp~~~~-~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ++++ ++. +|+++ ..++.|.++|..+++.+.++... +....|.+++|
T Consensus       337 avs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          337 NVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             EECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            9999 654 66554 55899999999999999998854 34467888887

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=2.5e-08  Score=76.98  Aligned_cols=181  Identities=11%  Similarity=0.121  Sum_probs=109.5

Q ss_pred             CCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      +.....+..|+|+++ ++++...++.|..|+.. +...                  ........+..+.+       +++
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~------------------~~~~~~~~~~gl~~-------d~d   96 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD------------------VLLDATAFTNGNAV-------DAQ   96 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE------------------EEEESCSCEEEEEE-------CTT
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE------------------EEeCCCCccceeeE-------CCC
Confidence            445578899999998 56677778999999874 3210                  11122334455544       888


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE----ec--------------CCeEEEE
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GY--------------NKSVRVF  199 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~--------------d~~i~~~  199 (279)
                      |+++++...++.|.+|+.. ++.......... .....+..++++|+|+++++    |.              .+.|..|
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCEEEEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            9877766667889999986 553322221111 11125678999999998885    31              2457777


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC------CcEEEEecCCCeEE--EEEe-ecCCCEEE
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELL--YVLH-GQEGGVTH  270 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d------g~i~~wd~~~~~~~--~~~~-~~~~~v~~  270 (279)
                      |..++ . .....        .......++|+| ++..|+.+...      +.|++||+..+...  ..+. ...+.+.+
T Consensus       175 d~~~g-~-~~~~~--------~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          175 PPDGS-P-LQRMA--------DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             CSSSC-C-CEEEE--------EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred             cCCCC-c-EEEEe--------cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe
Confidence            76542 1 11111        123467899999 77766665554      68999998765421  1111 11233456


Q ss_pred             EEEccCCC
Q 023672          271 VSKLSSAY  278 (279)
Q Consensus       271 ~~~spdg~  278 (279)
                      +++.++|+
T Consensus       244 i~~d~~G~  251 (305)
T 3dr2_A          244 FCVDRGGW  251 (305)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCC
Confidence            77777764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.13  E-value=1.8e-07  Score=69.93  Aligned_cols=179  Identities=8%  Similarity=0.033  Sum_probs=115.3

Q ss_pred             ceEEEEEccCCCeEEEeeC--CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           62 FLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ....++|++++.++++.+.  ++.|.++|+.+++......                .........+.+       . .+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----------------l~~~~fgeGi~~-------~-g~~   77 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK----------------MDDSYFGEGLTL-------L-NEK   77 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE----------------CCTTCCEEEEEE-------E-TTE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe----------------cCCCcceEEEEE-------e-CCE
Confidence            4679999998754444443  5799999999876543211                111111112222       2 223


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEecc-CccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      ..++.-.++.+.++|..+.+.+..+... ..        ...++++++.++++ .++.|.++|..+. +...   .+.-.
T Consensus        78 lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--------g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~---~I~Vg  145 (266)
T 2iwa_A           78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--------GWGLATDGKILYGSDGTSILYEIDPHTF-KLIK---KHNVK  145 (266)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECCSSS--------CCEEEECSSSEEEECSSSEEEEECTTTC-CEEE---EEECE
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEECCCCC--------eEEEEECCCEEEEECCCCeEEEEECCCC-cEEE---EEEEC
Confidence            4445556889999999999999888754 21        23455678777755 7889999999873 2222   22111


Q ss_pred             cCC-CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-------------CCEEEEEEccCCC
Q 023672          218 KEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-------------GGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~-~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-------------~~v~~~~~spdg~  278 (279)
                      ..+ .-..+..+.|.  ++.+++....++.|.+.|..+++.+..+....             ....+++|+|+|+
T Consensus       146 ~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~  218 (266)
T 2iwa_A          146 YNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK  218 (266)
T ss_dssp             ETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT
T ss_pred             CCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC
Confidence            011 11236677887  35666666668899999999999998887421             3568999999985

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.12  E-value=1.4e-07  Score=74.90  Aligned_cols=187  Identities=12%  Similarity=-0.063  Sum_probs=105.7

Q ss_pred             eEEEEEccCCCeEEEeeC--CCeEEEEeCCCCccccc-ccccc--cc-C---------CCCcccceeeecCCCceEEEE-
Q 023672           63 LKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYD-VNACS--LA-K---------DQDSYEASLVVTEGESVYDFC-  126 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~-~~~~~--~~-~---------~~~~~~~~~~~~~~~~v~~~~-  126 (279)
                      -..++|+|||++|+++..  ++.|.++| .+++.... .....  .. .         ..+.....+.. .+..+.... 
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~  204 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV  204 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence            457899999999998874  57899999 88766443 22110  00 0         01111111111 111110100 


Q ss_pred             ---e---eC--cccccCCCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCcc-----ccccceeeEEECCCCCEEEEe
Q 023672          127 ---W---FP--HMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAV-----DEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       127 ---~---~~--~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~  191 (279)
                         +   .|  ....+.+++..++..+..+.+.+.|+.++.  ....+......     -.......+.++|+++.+++.
T Consensus       205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~  284 (373)
T 2mad_H          205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             cccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence               0   00  001223344444444467889999987553  22222211100     001123447899999888754


Q ss_pred             -c----------CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc-EEEEEe-CCCcEEEEecCCCeEE
Q 023672          192 -Y----------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGS-YSQTSAIYREDNMELL  258 (279)
Q Consensus       192 -~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~-~dg~i~~wd~~~~~~~  258 (279)
                       .          ++.|.++|..+.    +....+.   .  .....+++|+| ++. +++++. .++.|.+||+.+++.+
T Consensus       285 ~~~~~~~~~~~~~~~V~VID~~t~----~vv~~i~---~--g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          285 TSEQSAWKLHAAAKEVTSVTGLVG----QTSSQIS---L--GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             eccCCcccccCCCCeEEEEECCCC----EEEEEEE---C--CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence             2          357999999873    3323331   1  22578999999 676 777776 5899999999999998


Q ss_pred             EEE
Q 023672          259 YVL  261 (279)
Q Consensus       259 ~~~  261 (279)
                      ..+
T Consensus       355 ~~i  357 (373)
T 2mad_H          355 QST  357 (373)
T ss_pred             eee
Confidence            884

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.11  E-value=1.7e-07  Score=69.35  Aligned_cols=179  Identities=6%  Similarity=0.041  Sum_probs=114.2

Q ss_pred             CceEEEEEccCCCeEEEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .....+.|+ ++.++.+.+.+|  .|+++|+.+++......                ......--.+..       . .+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~----------------l~~~~FgeGit~-------~-g~   97 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE----------------LGKRYFGEGISD-------W-KD   97 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE----------------CCTTCCEEEEEE-------E-TT
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe----------------cCCccceeEEEE-------e-CC
Confidence            345789998 676666777766  89999999886543221                111000011111       1 12


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      +..+..-.++.+.+||..+.+.+.++.....      -..++  ++++.|+.+ .++.|.++|..+. +   ....+.-.
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------G~glt--~dg~~L~~SdGs~~i~~iDp~T~-~---v~~~I~V~  165 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------GWGLT--HNDQYLIMSDGTPVLRFLDPESL-T---PVRTITVT  165 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSC------CCCEE--ECSSCEEECCSSSEEEEECTTTC-S---EEEEEECE
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCC------ceEEe--cCCCEEEEECCCCeEEEEcCCCC-e---EEEEEEec
Confidence            3333444688999999999999999886542      12344  567777755 6788999999873 2   22222211


Q ss_pred             cCCCC-CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec------------CCCEEEEEEccCCC
Q 023672          218 KEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------EGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------------~~~v~~~~~spdg~  278 (279)
                      ..+.. ..++.+.|.  ++.+++..-.++.|.+.|..+++.+..+...            ....++|||+|+++
T Consensus       166 ~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          166 AHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             ETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             cCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            11111 335567775  4666666667889999999999999888742            13569999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=8e-09  Score=88.40  Aligned_cols=190  Identities=7%  Similarity=0.101  Sum_probs=114.8

Q ss_pred             EEEEEccCCCeEEEeeCCC-------------------eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEE
Q 023672           64 KGIKWSPDGSSFLTSSEDK-------------------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (279)
                      ..++++|++..|+.++.++                   +|..+|..+++.........    ++.+.  ... ...++. 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~----~d~wd--~~~-~~~p~l-  317 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP----GDNWD--YTS-TQPMIL-  317 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST----TCCSC--CCC-CSCCEE-
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC----Ccccc--ccc-CCCcEE-
Confidence            4678999888888877664                   48888888876543221110    00000  000 001111 


Q ss_pred             EEeeCcccccCCCC---cEEEEecCCCcEEEEECCCCeeeEEEeccCcc------ccccce-------------------
Q 023672          125 FCWFPHMSASDPTS---CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------DEITAA-------------------  176 (279)
Q Consensus       125 ~~~~~~~~~~~~~~---~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~~~v-------------------  176 (279)
                             .....+|   ..++.++.+|.|+++|..+|+.+..+......      ....++                   
T Consensus       318 -------~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          318 -------ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             -------EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             -------EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence                   1112255   57899999999999999999988776533210      000000                   


Q ss_pred             -----eeEEECCCCCEEEEe-c-------------------------------------------CCeEEEEEccCCCCc
Q 023672          177 -----FSVAFNPTGTKIFAG-Y-------------------------------------------NKSVRVFDVHRPGRD  207 (279)
Q Consensus       177 -----~~~~~~~~~~~l~~~-~-------------------------------------------d~~i~~~d~~~~~~~  207 (279)
                           ..++|+|++.++++. .                                           .+.|..||+.++   
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---  467 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---  467 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---
Confidence                 257889988777753 2                                           167999999885   


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC-CEEEEEEccCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVSKLSSAY  278 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~spdg~  278 (279)
                       +......     +..++....+.. .+.+++.++.||.+++||.++++.+..+....+ ...-+.|.++|+
T Consensus       468 -~~~W~~~-----~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          468 -KAAWSVE-----HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             -EEEEEEE-----ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             -cEEeecC-----CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence             2222221     112333445666 666888889999999999999999988875432 112244556653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.98  E-value=1e-07  Score=76.43  Aligned_cols=229  Identities=13%  Similarity=0.022  Sum_probs=129.6

Q ss_pred             eeeEecCCCCcccceeeee-eccCCCCCceEEEEEccCCCeEEEeeC--CCeEEEEeCCCCcccccccccc---------
Q 023672           35 PLIRFDVPPHRTYHFYNQF-RTSSIPNNFLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACS---------  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~---------  102 (279)
                      .+.++|..+.+.......- .........-..++|+|||++|+++..  ++.|.+.|+.+++.........         
T Consensus       150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~  229 (426)
T 3c75_H          150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASP  229 (426)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCC
Confidence            4778888888776532210 000000122456899999999998874  5789999999887644332210         


Q ss_pred             ---ccCCCCcccceeeecCCCceEEE---Ee----eC--cccccCCCCcEEEEecCCCcEEEEECCCCeee--EEEecc-
Q 023672          103 ---LAKDQDSYEASLVVTEGESVYDF---CW----FP--HMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAY-  167 (279)
Q Consensus       103 ---~~~~~~~~~~~~~~~~~~~v~~~---~~----~~--~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~--~~~~~~-  167 (279)
                         .....+.....+.. ..+.+...   .+    .|  ....+.+++..++..+..+.|.+.|+......  ..+... 
T Consensus       230 ~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~  308 (426)
T 3c75_H          230 TVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT  308 (426)
T ss_dssp             TEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred             cEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence               00001111111111 11111110   00    01  01234777777777777889999998765422  111111 


Q ss_pred             -Cccc---cccceeeEEECCCCCEEEEe-c----------CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672          168 -DAVD---EITAAFSVAFNPTGTKIFAG-Y----------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       168 -~~~~---~~~~v~~~~~~~~~~~l~~~-~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (279)
                       ....   .......+.++|+++.+++. .          ++.|.++|..+. +.   ...+.-     ......+.|+|
T Consensus       309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-kv---v~~I~v-----g~~P~gia~sp  379 (426)
T 3c75_H          309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-ER---INKIEL-----GHEIDSINVSQ  379 (426)
T ss_dssp             TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CE---EEEEEE-----EEEECEEEECC
T ss_pred             ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-eE---EEEEEC-----CCCcCeEEEcc
Confidence             0000   00122347899998877754 2          357999999983 32   223311     12478999999


Q ss_pred             CCCc-EEEEEe-CCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccC
Q 023672          233 THTG-MLAIGS-YSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSS  276 (279)
Q Consensus       233 ~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spd  276 (279)
                       ++. +++++. .++.|.++|+.+++.+.++. .-..+  .+.++||
T Consensus       380 -Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P--~~i~~~~  423 (426)
T 3c75_H          380 -DAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP--QIITTHD  423 (426)
T ss_dssp             -SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC--CEEECCC
T ss_pred             -CCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC--cEEEcCC
Confidence             776 777777 58999999999999998873 22222  2666665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.98  E-value=2.1e-07  Score=74.22  Aligned_cols=184  Identities=11%  Similarity=0.081  Sum_probs=110.8

Q ss_pred             cCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCce---EEEEeeCcccccCCCCcEEEEec
Q 023672           70 PDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV---YDFCWFPHMSASDPTSCVFASTT  145 (279)
Q Consensus        70 ~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~l~s~~  145 (279)
                      +++++|+ ++..+++|.|+|+.+.......            ...+.   ...+   .... .|+.+...|+| +++++.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~------------~k~ie---~~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~  155 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKI------------IKVIE---PEEVKKVSGYS-RLHTVHCGPDA-IYISAL  155 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEE------------EEEEC---HHHHHHHHCEE-EEEEEEECSSC-EEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCcee------------eeeec---hhhcccccCCC-cccceeECCCe-EEEEcC
Confidence            7777665 5667899999999744211000            00010   0000   0011 24445568888 666665


Q ss_pred             CC------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEec--------------------CCeEEEE
Q 023672          146 RD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------------NKSVRVF  199 (279)
Q Consensus       146 ~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------d~~i~~~  199 (279)
                      .+      +.|.++|..+.+.+..+.......  ..-+.+.|+|+++.++++.                    +.+|.+|
T Consensus       156 g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~--~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~  233 (462)
T 2ece_A          156 GNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQ--YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW  233 (462)
T ss_dssp             EETTSCSCCEEEEECTTTCCEEEECCSBCTTC--CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred             CCcCCCCCCeEEEEECCCCeEEEEEccCCCCc--cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence            54      789999999999998887543211  1345688999999888763                    7899999


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEE--ccCCCcEEEEEe------CCCcEEEEecCCCeE--EEEE--eec---
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHTGMLAIGS------YSQTSAIYREDNMEL--LYVL--HGQ---  264 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~~l~~~~------~dg~i~~wd~~~~~~--~~~~--~~~---  264 (279)
                      |+.+.    +...++..  .........+.|  +| ++.+++.++      .+++|.+|....++.  +..+  ...   
T Consensus       234 D~~~~----k~~~tI~v--g~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          234 DLRKR----KRIHSLTL--GEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             ETTTT----EEEEEEES--CTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             ECCCC----cEeeEEec--CCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            99873    22233321  111223445555  99 777766665      566888777655432  2222  110   


Q ss_pred             -------------CCCEEEEEEccCCCC
Q 023672          265 -------------EGGVTHVSKLSSAYT  279 (279)
Q Consensus       265 -------------~~~v~~~~~spdg~~  279 (279)
                                   ...+..+.+||||||
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrf  334 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKF  334 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred             ccccccccccccCCCceeEEEECCCCCE
Confidence                         134688999999985

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.98  E-value=4.7e-08  Score=84.14  Aligned_cols=200  Identities=13%  Similarity=0.108  Sum_probs=114.2

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCe-------------EEEEeCCCCccccccc
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKT-------------LRIFSLPENGISYDVN   99 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~-------------i~iwd~~~~~~~~~~~   99 (279)
                      ...++++|+.+++.+..     .+  +......++|+ |++.|+.++.+..             |++|++.++.....  
T Consensus       154 ~~~i~v~dl~tg~~~~~-----~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--  223 (693)
T 3iuj_A          154 WREIHLMDVESKQPLET-----PL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR--  223 (693)
T ss_dssp             EEEEEEEETTTCSEEEE-----EE--EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE--
T ss_pred             eEEEEEEECCCCCCCcc-----cc--CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce--
Confidence            34677888888775431     11  11113567899 9999998887743             88998876432100  


Q ss_pred             cccccCCCCcccceeeec---CCCceEEEEeeCcccccCCCCcEEEEec----CCCcEEEEECCCCe-eeEEEeccCccc
Q 023672          100 ACSLAKDQDSYEASLVVT---EGESVYDFCWFPHMSASDPTSCVFASTT----RDHPIHLWDATTGL-LRCTYRAYDAVD  171 (279)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~i~d~~~~~-~~~~~~~~~~~~  171 (279)
                                   .+...   +......+.|       +|+|++|+...    .+..|.++|+.++. ....+..+..  
T Consensus       224 -------------~v~~~~~~~~~~~~~~~~-------SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~--  281 (693)
T 3iuj_A          224 -------------LVFGAIPAQHHRYVGATV-------TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD--  281 (693)
T ss_dssp             -------------EEESCSGGGCCSEEEEEE-------CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS--
T ss_pred             -------------EEEecCCCCCeEEEEEEE-------cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC--
Confidence                         01111   1122445544       88998875543    23589999998763 2334443332  


Q ss_pred             cccceeeEEECCCCCEEE-Ee-c---CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCC
Q 023672          172 EITAAFSVAFNPTGTKIF-AG-Y---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQ  245 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~-~~-~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg  245 (279)
                         ..... |++++..|+ .+ .   .+.|..+|+.++...  ....+    ..|...+.  .|++ ++..|+.. ..++
T Consensus       282 ---~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l----~~~~~~~~--~~s~-~g~~lv~~~~~~g  348 (693)
T 3iuj_A          282 ---ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDL----IPERQQVL--TVHS-GSGYLFAEYMVDA  348 (693)
T ss_dssp             ---SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEE----ECCCSSCE--EEEE-ETTEEEEEEEETT
T ss_pred             ---ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEE----ecCCCCEE--EEEE-ECCEEEEEEEECC
Confidence               33333 666666555 44 3   367999999874210  11122    23333444  8899 55555544 4454


Q ss_pred             --cEEEEecCCCeEEEEEee-cCCCEEEEEEccCCC
Q 023672          246 --TSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       246 --~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                        .|++||+..+. ...+.. ..+.+..+.++||+.
T Consensus       349 ~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          349 TARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             EEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS
T ss_pred             eeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC
Confidence              58899987543 444443 334577777777764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.95  E-value=3.9e-08  Score=84.35  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=113.6

Q ss_pred             EEEEccCCCeEEEeeCCCe-------------------EEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEE
Q 023672           65 GIKWSPDGSSFLTSSEDKT-------------------LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF  125 (279)
Q Consensus        65 ~~~~~~~~~~l~t~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  125 (279)
                      .++++|+...++.++.++.                   |..||..+++.........    ++...    .....+....
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~----~d~wd----~~~~~~~~l~  310 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP----GDAWD----YTATQHMILA  310 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST----TCCSC----CCCCSCEEEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC----ccccc----ccCCCCcEEE
Confidence            6789998888988887764                   8899999886643321110    00000    0000011000


Q ss_pred             EeeCcccccCCCCc---EEEEecCCCcEEEEECCCCeeeEEEeccCcc-----------------------cc-------
Q 023672          126 CWFPHMSASDPTSC---VFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----------------------DE-------  172 (279)
Q Consensus       126 ~~~~~~~~~~~~~~---~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------------------~~-------  172 (279)
                      ..       ..+|.   .++.++.+|.++++|.++|+.+.........                       ..       
T Consensus       311 d~-------~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p  383 (689)
T 1yiq_A          311 EL-------PIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP  383 (689)
T ss_dssp             EE-------EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred             ee-------ccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence            00       11343   7888999999999999999987544322100                       00       


Q ss_pred             ----ccceeeEEECCCCCEEEEe-c---------------------------------------------CCeEEEEEcc
Q 023672          173 ----ITAAFSVAFNPTGTKIFAG-Y---------------------------------------------NKSVRVFDVH  202 (279)
Q Consensus       173 ----~~~v~~~~~~~~~~~l~~~-~---------------------------------------------d~~i~~~d~~  202 (279)
                          ...-..++|+|+..++++. .                                             ++.|+.||+.
T Consensus       384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~  463 (689)
T 1yiq_A          384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV  463 (689)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred             CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence                0001237888887777643 1                                             3779999999


Q ss_pred             CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC-EEEEEEccCCC
Q 023672          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVSKLSSAY  278 (279)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~spdg~  278 (279)
                      ++    +.......     ..++..-.+.. .+.+++.|+.||.|+.||.++|+.+.+++...+. ..-+.|..||+
T Consensus       464 tG----~~~W~~~~-----~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~  530 (689)
T 1yiq_A          464 KQ----QAAWEVPY-----VTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGE  530 (689)
T ss_dssp             TT----EEEEEEEE-----SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CC----CeEeEccC-----CCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCE
Confidence            85    22222211     11222335556 6678999999999999999999999888755331 12355667765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.95  E-value=1e-06  Score=65.34  Aligned_cols=178  Identities=11%  Similarity=0.076  Sum_probs=115.7

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .....+.|+ ++.++.+.+.+|.|+++|+.+++.....                 ......--.+..       . .+++
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-----------------l~~~~FgeGit~-------~-g~~L  108 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-----------------RLGNIFAEGLAS-------D-GERL  108 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-----------------ECTTCCEEEEEE-------C-SSCE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-----------------CCCCcceeEEEE-------e-CCEE
Confidence            445788887 4566678888899999999988654332                 111000011211       2 1233


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccC
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      .+..-.++.+.+||..+.+.+.++.....      -+.++  ++++.|+.+ .++.|.++|..+. +...   .+.-...
T Consensus       109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-~v~~---~I~V~~~  176 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQRERTTRYSGE------GWGLC--YWNGKLVRSDGGTMLTFHEPDGF-ALVG---AVQVKLR  176 (268)
T ss_dssp             EEEESSSCEEEEEETTTTEEEEEEECSSC------CCCEE--EETTEEEEECSSSEEEEECTTTC-CEEE---EEECEET
T ss_pred             EEEEccCCEEEEEECCcCcEEEEEeCCCc------eeEEe--cCCCEEEEECCCCEEEEEcCCCC-eEEE---EEEeCCC
Confidence            44445688999999999999999886432      23444  567777765 7899999999873 2222   2211111


Q ss_pred             C-CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec-------------CCCEEEEEEccCCC
Q 023672          220 G-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVSKLSSAY  278 (279)
Q Consensus       220 ~-~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~spdg~  278 (279)
                      + .-..++.+.|.  +|.+++..-.++.|.+.|..+++.+..+...             .+-.++||++|+++
T Consensus       177 g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          177 GQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             TEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             CcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence            1 11245677776  4566666667889999999999998887742             13579999999865

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=8.2e-07  Score=66.41  Aligned_cols=186  Identities=5%  Similarity=-0.060  Sum_probs=114.0

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE-eeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.++|+.+++......    +..+ .....+++.  +..|+. .-.++.+.++|..+.+....                
T Consensus        45 ~v~~iD~~tg~v~~~i~----l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~----------------  101 (266)
T 2iwa_A           45 SVRQVALQTGKVENIHK----MDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN----------------  101 (266)
T ss_dssp             EEEEEETTTCCEEEEEE----CCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE----------------
T ss_pred             EEEEEECCCCCEEEEEe----cCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE----------------
Confidence            46778888888765322    1122 122344444  555554 44588999999987644221                


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                      +...          .|....+++++..++.+..++.|.++|..+.+.+..+...........++.+.|. ++..++.. .
T Consensus       102 i~~g----------~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          102 FTHQ----------MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             EECC----------SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EECC----------CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            1111          0222234557777777777899999999999888887754321222235677887 66554544 7


Q ss_pred             CCeEEEEEccCCCCceeeeeeccc------ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          193 NKSVRVFDVHRPGRDFEKYSTLKG------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      ++.|.+.|..++ +....+..-..      ...........++|+|++..+++++...+.|.+.++...
T Consensus       171 ~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          171 TDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             SSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            899999999984 33332221000      000112356899999955678888888889988887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.91  E-value=6e-06  Score=61.38  Aligned_cols=199  Identities=10%  Similarity=0.055  Sum_probs=118.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+.+-.+.+..++|+|++..|+ +...++.|...|.. +.....                +........-.+++      
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~----------------i~l~g~~D~EGIa~------   77 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT----------------IPLDFVKDLETIEY------   77 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE----------------EECSSCSSEEEEEE------
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE----------------EecCCCCChHHeEE------
Confidence            4555566799999999766554 57778888888887 432211                11111123334433      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCee---eEEEecc-CccccccceeeEEECCCCCEEE-EecCCeEEEEEccC--CCC
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR--PGR  206 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~--~~~  206 (279)
                       .+++.++++.-.++.+.++++.....   +...... ...........++|+|.++.|+ +.......+|.++.  ...
T Consensus        78 -~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A           78 -IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             -CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred             -eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence             66777777766678888988865432   2223211 1112223578999999987666 44333344444431  111


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC---------CCEEEEEEccCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVSKLSSA  277 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~spdg  277 (279)
                      ..............+...+.+++++|..+.+++.......+..+|.. ++.+..+.-..         ...-+|+|.|+|
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            11211110000012234578999999778888888888889999964 66666655332         256899999998


Q ss_pred             C
Q 023672          278 Y  278 (279)
Q Consensus       278 ~  278 (279)
                      +
T Consensus       236 ~  236 (255)
T 3qqz_A          236 N  236 (255)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.90  E-value=3.2e-07  Score=67.92  Aligned_cols=170  Identities=8%  Similarity=-0.020  Sum_probs=103.4

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      +..+|+.+++.....     +.   .........+++..|. ..-.++.+.+||..+.+.....                
T Consensus        77 v~~iD~~Tgkv~~~~-----l~---~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti----------------  132 (268)
T 3nok_A           77 LRQLSLESAQPVWME-----RL---GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT----------------  132 (268)
T ss_dssp             EEECCSSCSSCSEEE-----EC---TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE----------------
T ss_pred             EEEEECCCCcEEeEE-----CC---CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE----------------
Confidence            777888888877632     11   1233322333444444 4445889999999876543221                


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                                 .+.+....+.+++..|+.+..++.|.++|..+.+.+..+...........++.+.|. +|+.++.. .+
T Consensus       133 -----------~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          133 -----------RYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             -----------ECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             -----------eCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence                       111111233446778877777899999999999988888765433333345667776 67655555 78


Q ss_pred             CeEEEEEccCCCCceeeeee--cccc----cCCCCCceEEEEEccCCCcEEEEEe
Q 023672          194 KSVRVFDVHRPGRDFEKYST--LKGN----KEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~--~~~~----~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      ..|.+.|..++ +....+..  +...    ......-.+.|+++|+...++++|-
T Consensus       201 ~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          201 SDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             SEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            89999999984 33332211  1000    1112345789999996666777664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=3.8e-06  Score=61.67  Aligned_cols=179  Identities=12%  Similarity=0.117  Sum_probs=113.3

Q ss_pred             CceEEEEEccCCCeEEEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...-.+.|++ +.++.+.+.+|  .|+++|+.+++........                ....--.+..       . ++
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----------------~~~fgeGi~~-------~-~~   75 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP----------------PPYFGAGIVA-------W-RD   75 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEE-------E-TT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC----------------CCcceeEEEE-------e-CC
Confidence            4567899986 55556666654  8999999988654322111                1000011111       1 23


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      +.....-.++.+.+||..+.+.+.++.....      -..++  +++..|+.+ .++.|.++|..+. +.   ...+.-.
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~------Gwglt--~dg~~L~vSdgs~~l~~iDp~t~-~~---~~~I~V~  143 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGE------GWALT--SDDSHLYMSDGTAVIRKLDPDTL-QQ---VGSIKVT  143 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSC------CCEEE--ECSSCEEEECSSSEEEEECTTTC-CE---EEEEECE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCC------ceEEe--eCCCEEEEECCCCeEEEEeCCCC-eE---EEEEEEc
Confidence            3444455688999999999999999886542      23444  567777755 7889999999873 22   2222211


Q ss_pred             cCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec-------------CCCEEEEEEccCCC
Q 023672          218 KEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~spdg~  278 (279)
                      ..+. -..++.+.|.  ++.+++..-.+..|.+.|..+++.+..+...             ..-.++||++|+++
T Consensus       144 ~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          144 AGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             ETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             cCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence            1111 1245667765  4666666656789999999999999888732             13568999999764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.86  E-value=3e-07  Score=72.51  Aligned_cols=226  Identities=10%  Similarity=-0.058  Sum_probs=123.1

Q ss_pred             eeeeeEecCCCCcccceeeee---eccCCCCCceEEEEEccCCCeEEEeeC--CCeEEE--EeCCCCcccccccccc---
Q 023672           33 TWPLIRFDVPPHRTYHFYNQF---RTSSIPNNFLKGIKWSPDGSSFLTSSE--DKTLRI--FSLPENGISYDVNACS---  102 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~t~~~--dg~i~i--wd~~~~~~~~~~~~~~---  102 (279)
                      .-.+.++|..+.+........   +...+  ..-..++|+|||++|+++..  +..|.+  +|..+-... ....+.   
T Consensus        95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g--~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i-~v~~~~~~~  171 (368)
T 1mda_H           95 TDYVEVFDPVTFLPIADIELPDAPRFSVG--PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIH  171 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBS--CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCCCE
T ss_pred             CCEEEEEECCCCCEEEEEECCCccccccC--CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEE-ECCCceEEc
Confidence            345788999998887632210   00001  23457899999999998875  457888  998651000 000000   


Q ss_pred             -------ccCCCCcccceeeecC----CCceE-------EEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe--eeE
Q 023672          103 -------LAKDQDSYEASLVVTE----GESVY-------DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRC  162 (279)
Q Consensus       103 -------~~~~~~~~~~~~~~~~----~~~v~-------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~--~~~  162 (279)
                             .....+.....+....    .+.+.       .+.-.|.  + .+++..++..+. +.|.+.|+.++.  .+.
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~  247 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA  247 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence                   0000111111111111    00000       0000111  1 334445555555 889999986543  222


Q ss_pred             EEeccCc-----cccccceeeEEECCCCCEEEEe-c-C--------CeEEEEEccCCCCceeeeeecccccCCCCCceEE
Q 023672          163 TYRAYDA-----VDEITAAFSVAFNPTGTKIFAG-Y-N--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (279)
Q Consensus       163 ~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~-d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (279)
                      .+.....     .........+.|+|+++.++++ . .        +.+.++|+.+.    +....+.    . ......
T Consensus       248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~----~vv~~i~----v-g~~p~g  318 (368)
T 1mda_H          248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG----QTSGPIS----N-GHDSDA  318 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC----CEEECCE----E-EEEECE
T ss_pred             EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC----eEEEEEE----C-CCCcce
Confidence            2221110     0000112237899999888854 3 3        36779999984    2222331    1 125789


Q ss_pred             EEEccCCCc-EEEEEe-CCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          228 IAFSPTHTG-MLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       228 ~~~sp~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ++|+| ++. ++++.. .++.|.++|+.+++.+.++..... ..++++.+.
T Consensus       319 i~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~~  367 (368)
T 1mda_H          319 IIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQNE  367 (368)
T ss_dssp             EEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCCC
T ss_pred             EEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeecC
Confidence            99999 665 666666 599999999999999999886544 467777654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=8.5e-10  Score=87.62  Aligned_cols=148  Identities=16%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      ++..+++++.||.|..||..+++.......                   ..+.+.       .+..++..+++++.|+.|
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------~~~~s~-------p~~~~g~~~v~~s~dg~l   61 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------DPVLQV-------PTHVEEPAFLPDPNDGSL   61 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------CCSCCC-------C-----CCEEECTTTCCE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------CCceec-------ceEcCCCEEEEeCCCCEE
Confidence            567899999999999999998865332111                   111111       123466678888899999


Q ss_pred             EEEECCCCeeeEEEeccCcccccccee-eEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEE
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (279)
                      +.||..+|+.+..+..+...    .+. +..+..++ .+++ +.++.++.||..++..    ...+    ..+.    ..
T Consensus        62 ~a~d~~tG~~~w~~~~~~~~----~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~----~w~~----~~~~----~~  124 (369)
T 2hz6_A           62 YTLGSKNNEGLTKLPFTIPE----LVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEK----QQTL----SSAF----AD  124 (369)
T ss_dssp             EEC-----CCSEECSCCHHH----HHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             EEEECCCCceeeeeeccCcc----ccccCceEecCC-EEEEEeCCCEEEEEECCCCcE----EEEe----cCCC----cc
Confidence            99999999877666543210    111 11111233 4454 4889999999998522    2222    1111    23


Q ss_pred             EEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       229 ~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .++| ++..+++++.|+.|+.||.++++.+..+.
T Consensus       125 ~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          125 SLSP-STSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cccc-cCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            5667 77788889999999999999998765443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.84  E-value=1.4e-06  Score=64.51  Aligned_cols=172  Identities=8%  Similarity=0.023  Sum_probs=102.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+..+|+.+++......    +   ..........+++..|.... .++.+.+||..+.+.....               
T Consensus        66 ~v~~vD~~Tgkv~~~~~----l---~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti---------------  123 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIE----L---GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF---------------  123 (262)
T ss_dssp             EEEEECTTTCCEEEEEE----C---CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE---------------
T ss_pred             eEEEEECCCCcEEEEEe----c---CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE---------------
Confidence            46778888888765322    1   12344443444555665554 4889999999876543221               


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                                  .+.+....+.+++..|+.+..++.|.++|..+.+.+..+...........++.+.|. +|+..+.. .
T Consensus       124 ------------~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          124 ------------NYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             ------------ECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             ------------ECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence                        111111233446777777777888999999999988887764321111234457776 67655555 7


Q ss_pred             CCeEEEEEccCCCCceeeeee--cccc---cCCCCCceEEEEEccCCCcEEEEEe
Q 023672          193 NKSVRVFDVHRPGRDFEKYST--LKGN---KEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~--~~~~---~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      +..|.+.|..++ +....+..  +...   ......-.+.|+|+|+...++++|-
T Consensus       191 ~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            889999999984 33332221  1100   0111245689999995555555553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.83  E-value=7.5e-08  Score=75.66  Aligned_cols=147  Identities=12%  Similarity=0.034  Sum_probs=91.1

Q ss_pred             CcccccCCCCcEEEEec--CCCcEEEEECCCCeeeEEEecc--CccccccceeeEEECCCCCEEEEe-c-----CCeEEE
Q 023672          129 PHMSASDPTSCVFASTT--RDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTGTKIFAG-Y-----NKSVRV  198 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~--~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~-----d~~i~~  198 (279)
                      |..++++++|+++++..  .++.++||.+.+++. ..+...  ....+...+..++++++++++++. .     ++.|.+
T Consensus        19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~   97 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA   97 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred             cceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence            34456688999888863  234355555545543 222211  111223478899999999877654 3     689999


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe---CCCcEEEEecCCCeEEEEEeecC----------
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMELLYVLHGQE----------  265 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~----------  265 (279)
                      ||+.++ +....+ .+......+...+..++++|+++..+++..   .++.|.+||+.+++....+.+|.          
T Consensus        98 ~d~~tg-~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           98 WDTLNN-QLSRVI-YLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EETTTT-EEEEEE-ECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EECCCC-eEEEEE-ECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999873 222211 111111223345789999984566666665   67889999998887665553321          


Q ss_pred             -------------------CCEEEEEEccCCC
Q 023672          266 -------------------GGVTHVSKLSSAY  278 (279)
Q Consensus       266 -------------------~~v~~~~~spdg~  278 (279)
                                         ..+.+|+|+|||+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~  207 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE  207 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCC
Confidence                               2368899999996

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=2.4e-05  Score=58.97  Aligned_cols=178  Identities=11%  Similarity=0.053  Sum_probs=107.4

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ....++++++++..|+ +-...+.|.+++++.....                 .+......       .|..++++|++.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-----------------~~~~~~~~-------~P~~i~vd~~~g  134 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-----------------VLFDTGLV-------NPRGIVTDPVRG  134 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------EEECSSCS-------SEEEEEEETTTT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-----------------EEEECCCC-------CccEEEEeeCCC
Confidence            4578999999765555 4455778999988642110                 01000111       233345577555


Q ss_pred             EEEEecC---CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeec
Q 023672          140 VFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       140 ~l~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      .|+.+..   .+.|..+++... ....+....    ......++++|++..|+ +. ..+.|.++|+... . .   ..+
T Consensus       135 ~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~----~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~-~---~~~  204 (267)
T 1npe_A          135 NLYWTDWNRDNPKIETSHMDGT-NRRILAQDN----LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-G-R---RKV  204 (267)
T ss_dssp             EEEEEECCSSSCEEEEEETTSC-CCEEEECTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-E-E---EEE
T ss_pred             EEEEEECCCCCcEEEEEecCCC-CcEEEEECC----CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-c-e---EEE
Confidence            5554443   367888887643 233332111    11567899999887776 44 6789999999742 1 1   111


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-CCEEEEEEccCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVSKLSSAY  278 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~spdg~  278 (279)
                      .   .. ......++..  ++.++++...++.|..+|..+++.+..+.... ....++++.|++.
T Consensus       205 ~---~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          205 L---EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             E---EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             e---cC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            1   11 1224556553  45566666667899999999999888887543 2478899999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.70  E-value=6e-06  Score=60.62  Aligned_cols=172  Identities=9%  Similarity=0.060  Sum_probs=101.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+..+|+.+++......    +.   .........+.+..|. ..-.++.+.+||..+.+.....               
T Consensus        44 ~v~~vD~~tgkv~~~~~----l~---~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti---------------  101 (243)
T 3mbr_X           44 SVRKVDLETGRILQRAE----VP---PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF---------------  101 (243)
T ss_dssp             EEEEEETTTCCEEEEEE----CC---TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE---------------
T ss_pred             eEEEEECCCCCEEEEEe----CC---CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE---------------
Confidence            46778888888765322    11   1233333334455555 4445889999999876543221               


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  192 (279)
                       ...  ..=..+         .+++..|+.+..++.|.++|..+.+.+..+...........++-+.+. +|+.++.. .
T Consensus       102 -~~~--~~Gwgl---------t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X          102 -RYP--GEGWAL---------TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             -ECS--SCCCEE---------EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             -eCC--CCceEE---------eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence             111  111222         336667777777889999999999988888765432222244556665 66655544 7


Q ss_pred             CCeEEEEEccCCCCceeeeee--ccccc----CCCCCceEEEEEccCCCcEEEEEe
Q 023672          193 NKSVRVFDVHRPGRDFEKYST--LKGNK----EGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       193 d~~i~~~d~~~~~~~~~~~~~--~~~~~----~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      +..|.+.|..++ +....+..  +....    .....-.+.|+++|+...++++|-
T Consensus       169 s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          169 TSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            889999999984 33332211  11100    012245789999995566666663

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.67  E-value=3.2e-06  Score=65.64  Aligned_cols=124  Identities=10%  Similarity=0.037  Sum_probs=78.8

Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ..+++.+.+ ++  +.|..+| .+++..........     .+.++...+++.+.+++.++.+..+|..  +....   .
T Consensus       184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~-----~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~---~  249 (330)
T 3hxj_A          184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYW-----TVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKW---R  249 (330)
T ss_dssp             ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSC-----CCSCCEECTTSCEEEEETTTEEEEECTT--SCEEE---E
T ss_pred             EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCc-----ceeceEECCCCeEEEEcCCCeEEEECCC--CCEeE---E
Confidence            345665444 44  7799999 77777666654433     6778889998877777778888888753  22222   2


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ..    .....+.++...+ ++ .|..++.+|.|..+|. +++.+..+......+.++...++|+
T Consensus       250 ~~----~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          250 FK----TGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT  307 (330)
T ss_dssp             EE----CSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred             ee----CCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence            21    1122233455555 55 5666777888999995 7777776665555566666666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.61  E-value=1.2e-05  Score=62.38  Aligned_cols=196  Identities=12%  Similarity=0.076  Sum_probs=103.4

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccC---CCCcccceeeecCCCceEEEEeeCcccccCC-C
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK---DQDSYEASLVVTEGESVYDFCWFPHMSASDP-T  137 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~  137 (279)
                      ...+++|++++++++++..++.|..|+..++....-........   ....... ...........+       ++++ +
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi-------~~~~~~   91 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA-EKRPLCGRTYDI-------SYNLQN   91 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCG-GGHHHHCCEEEE-------EEETTT
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccch-hccccCCCCceE-------EEcCCC
Confidence            35678899999878888889999999887543211000000000   0000000 000001123334       4465 5


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEe-c-----------------CCeEEE
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-Y-----------------NKSVRV  198 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~-----------------d~~i~~  198 (279)
                      ++ |+.+...+.|..+|..++... .+...........+..+++.+ +|+++++. .                 ++.|..
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            54 444444455888887765432 222111101112467899999 89877753 2                 267888


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEeCCCcEEEEecCCCe--EEEEEeecCCCEEEEEEcc
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~sp  275 (279)
                      ||..++ . ...   +..    .......++++| ++.. +++-..++.|..|++....  ....+....+ ...+++.+
T Consensus       170 ~d~~~~-~-~~~---~~~----~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~  238 (322)
T 2fp8_A          170 YDPSTK-E-TTL---LLK----ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA  238 (322)
T ss_dssp             EETTTT-E-EEE---EEE----EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred             EeCCCC-E-EEE---ecc----CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence            887652 1 111   110    012356799999 7764 4554667889999987421  1122222223 67788888


Q ss_pred             CCC
Q 023672          276 SAY  278 (279)
Q Consensus       276 dg~  278 (279)
                      +|+
T Consensus       239 ~G~  241 (322)
T 2fp8_A          239 DGH  241 (322)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.55  E-value=5.8e-06  Score=71.82  Aligned_cols=162  Identities=9%  Similarity=0.060  Sum_probs=93.5

Q ss_pred             CCCC-ceEEEEEc-cCCCeEEEeeC-C----CeEEEEeCCCC-ccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672           58 IPNN-FLKGIKWS-PDGSSFLTSSE-D----KTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (279)
Q Consensus        58 ~h~~-~v~~~~~~-~~~~~l~t~~~-d----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (279)
                      +|.- .+...+|| |||++||.+.. +    ..|+++|+.++ .....                       .+..   ..
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----------------------~~~~---~~  223 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----------------------KVSG---TN  223 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----------------------CEEE---EC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----------------------cccC---ce
Confidence            4443 67889999 99998884432 2    35999999876 32100                       0100   01


Q ss_pred             cccccCCCCcEEEEecCC-----CcEEEEECCCCeee--EEEeccCccccccceeeEEECCCCCEEE-Ee---cCCeEEE
Q 023672          130 HMSASDPTSCVFASTTRD-----HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRV  198 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~~  198 (279)
                      ..++|+||++.|+....+     ..|.++++.++...  ..+.....    .....+.|+|||++|+ +.   ....|++
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~l~~  299 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP----LFSAFMYKAADTNTLCIGSQSPETAEVHL  299 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT----TCEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC----ceEEEEEECCCCCEEEEEecCCCCceEEE
Confidence            123458888877776654     25888888776422  22222111    1345789999999888 33   2456888


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC--C--cEEEEecCC
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--Q--TSAIYREDN  254 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d--g--~i~~wd~~~  254 (279)
                      +|+.++..... ...+.   ........++.|+. ++.+++....+  +  .|..+|+.+
T Consensus       300 ~d~~~~~~~~~-~~~l~---~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          300 LDLRKGNAHNT-LEIVR---PREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EESSSCTTCCC-EEESS---CCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EECCCCCCCce-eEEee---cCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            89876421220 01111   22334556666665 66666665544  2  566677664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.53  E-value=8.4e-06  Score=67.44  Aligned_cols=171  Identities=12%  Similarity=0.065  Sum_probs=105.2

Q ss_pred             cCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC-CCCcEEEEec--
Q 023672           70 PDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFASTT--  145 (279)
Q Consensus        70 ~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~s~~--  145 (279)
                      +||++|+.... ++.|.+.|+.+.+....                +....+.....+.+      .+ |++.++++++  
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i----------------i~ip~g~~phg~~~------~~~p~~~~v~~~~~~  156 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAI----------------LEIPNAKGIHGLRP------QKWPRSNYVFCNGED  156 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEE----------------EECSSCCSEEEEEE------CCSSBCSEEEEEECS
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeE----------------EeCCCCCCCcceee------eecCCCcEEEEeccc
Confidence            38887776554 66799999998654321                11122222333322      13 6777776663  


Q ss_pred             ----------------CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCC--------------
Q 023672          146 ----------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK--------------  194 (279)
Q Consensus       146 ----------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~--------------  194 (279)
                                      .++.+.++|..+.+....+....      ....++++|+|+++++ +.+.              
T Consensus       157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence                            34579999999999888887654      2346889999999984 4221              


Q ss_pred             ------------------------eEEEEEccCCCCceee-eeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEE
Q 023672          195 ------------------------SVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSA  248 (279)
Q Consensus       195 ------------------------~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~  248 (279)
                                              .|.+.|.++...  .. ...+..     .....++.++| +|. +++++..+.+|.
T Consensus       231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~--~~~~~~Ipv-----g~~PhGv~~sP-DGk~v~V~~~~s~~Vs  302 (595)
T 1fwx_A          231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS--SLFTRYIPI-----ANNPHGCNMAP-DKKHLCVAGKLSPTVT  302 (595)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC--CSSEEEEEE-----ESSCCCEEECT-TSSEEEEECTTSSBEE
T ss_pred             ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC--ceeEEEEec-----CCCceEEEEcC-CCCEEEEeCCCCCeEE
Confidence                                    244555543100  01 111110     12356789999 665 455556788999


Q ss_pred             EEecCCCe------------EEEEEeecCCCEEEEEEccCC
Q 023672          249 IYREDNME------------LLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       249 ~wd~~~~~------------~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ++|+.+.+            .+..+. -....+.++|+|||
T Consensus       303 Vid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          303 VLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG  342 (595)
T ss_dssp             EEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS
T ss_pred             EEECcccccccccccCcccceEEEcC-CCCCcceEEECCCC
Confidence            99998653            334443 23467999999998

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.46  E-value=6.8e-06  Score=70.35  Aligned_cols=176  Identities=13%  Similarity=0.153  Sum_probs=103.0

Q ss_pred             EEEEEccCCCeEEEeeCCCe-------------------EEEEeCCCCccccccccccccCCCCcccceeeecCCCceEE
Q 023672           64 KGIKWSPDGSSFLTSSEDKT-------------------LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (279)
Q Consensus        64 ~~~~~~~~~~~l~t~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (279)
                      ..++++|+...++.++.++.                   |..+|..+++.........    ++...    .....+...
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~----~~~wd----~~~~~~~~~  304 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP----GDSWD----FTATQQITL  304 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST----TCCSC----CCCCSCEEE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC----Ccccc----ccCCCCcEE
Confidence            35788888888888877763                   8888888876543321110    00000    000011111


Q ss_pred             EEeeCcccccCCCCc---EEEEecCCCcEEEEECCCCeeeEEEeccCcc-----c--cccc-------------------
Q 023672          125 FCWFPHMSASDPTSC---VFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----D--EITA-------------------  175 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~---~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~--~~~~-------------------  175 (279)
                      ..       +..+++   .++.++.+|.+.++|..+|+.+...+.....     +  ...+                   
T Consensus       305 ~d-------~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~  377 (668)
T 1kv9_A          305 AE-------LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (668)
T ss_dssp             EE-------EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             EE-------eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence            10       011443   6888999999999999999987554332200     0  0000                   


Q ss_pred             -----eeeEEECCCCCEEEEe-------------------------------------cCCeEEEEEccCCCCceeeeee
Q 023672          176 -----AFSVAFNPTGTKIFAG-------------------------------------YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       176 -----v~~~~~~~~~~~l~~~-------------------------------------~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                           -..++++|+...+++.                                     .++.|..||+.++.    ....
T Consensus       378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~----~~W~  453 (668)
T 1kv9_A          378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK----AAWK  453 (668)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE----EEEE
T ss_pred             ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc----EEEE
Confidence                 0126777776655531                                     23779999998852    2222


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ...     ........+.. .+.+++.++.|+.++.||.++++.+..+...
T Consensus       454 ~~~-----~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          454 VPY-----PTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEE-----SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccC-----CCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            211     11222334445 5678888999999999999999999888754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.44  E-value=3.8e-06  Score=65.23  Aligned_cols=119  Identities=11%  Similarity=0.027  Sum_probs=72.5

Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      ..+..++.++.|..+|.. ++..........     .+.++...+++.+++++.++.|..+|.. + ....   ...   
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g-~~~~---~~~---  173 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLYAINPD-G-TEKW---RFK---  173 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEEEECTT-S-CEEE---EEE---
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEEEECCC-C-CEeE---EEe---
Confidence            356667778888888887 766655554332     4556677777776666577888888887 3 2111   111   


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                       .....+.++...+ ++.+++. +  +.|..+| .+++.+.........+.++...++|
T Consensus       174 -~~~~~~~~~~~d~-~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g  226 (330)
T 3hxj_A          174 -TNDAITSAASIGK-DGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG  226 (330)
T ss_dssp             -CSSCCCSCCEECT-TCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS
T ss_pred             -cCCCceeeeEEcC-CCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC
Confidence             1123455566666 5554443 3  6688888 6776666555444456666666665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.39  E-value=4.8e-05  Score=65.27  Aligned_cols=153  Identities=9%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             eeEecCCCCcccceeeeeeccCCCC-------CceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCccccccccccccC
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPN-------NFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAK  105 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~  105 (279)
                      +..+|..+++....++.    ..|.       .....+....+|   ..|+.++.+|.+.++|..+++..........  
T Consensus       285 v~AlD~~TG~~~W~~~~----~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~--  358 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQE----TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV--  358 (677)
T ss_dssp             EEEECTTTCCEEEEEES----STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--
T ss_pred             EEEEECCCCCEEEEEec----CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc--
Confidence            67778888887654332    1121       122233444477   6789999999999999999877543321110  


Q ss_pred             CCCcccceeeecCCCceE---------EEEeeC--------cccccCCCCcEEEEecC----------------------
Q 023672          106 DQDSYEASLVVTEGESVY---------DFCWFP--------HMSASDPTSCVFASTTR----------------------  146 (279)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~---------~~~~~~--------~~~~~~~~~~~l~s~~~----------------------  146 (279)
                         .....+. ..+.++.         .....|        ..++++|++.++++...                      
T Consensus       359 ---~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~  434 (677)
T 1kb0_A          359 ---NWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKP  434 (677)
T ss_dssp             ---SSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTST
T ss_pred             ---CcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccc
Confidence               0000000 0011110         000011        12456777777666432                      


Q ss_pred             ---------------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          147 ---------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       147 ---------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                                           .+.|..||+.+++.+..+....      ++....+...+..++.+ .|+.+++||.+++
T Consensus       435 ~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          435 QSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS------PWNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             TGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC------CCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence                                 2779999999999988887543      34455666677777766 9999999999985

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.37  E-value=0.00024  Score=54.65  Aligned_cols=185  Identities=10%  Similarity=0.040  Sum_probs=101.7

Q ss_pred             CceEEEEEccCCCeEEEeeC-CC-eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSE-DK-TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~-dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      +...+++++++++++++... ++ .|..++..++.....                ...........++       ..+++
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~----------------~~~~~~~~~~g~~-------~~~~~  128 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL----------------LTLPDAIFLNGIT-------PLSDT  128 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE----------------EECTTCSCEEEEE-------ESSSS
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE----------------EeCCCccccCccc-------ccCCC
Confidence            45889999999986555433 22 466667665532110                0000111111121       13344


Q ss_pred             cEEEEecCCCcEEEEECCCCee-eEEEecc----CccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeee
Q 023672          139 CVFASTTRDHPIHLWDATTGLL-RCTYRAY----DAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~  211 (279)
                      ..+++-..++.|..+|..+++. +......    ...........+  +|+++.|+.+  ..+.|..||+...+. ....
T Consensus       129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~~~~  205 (306)
T 2p4o_A          129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-PGEP  205 (306)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-BCCC
T ss_pred             cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-CCcc
Confidence            4455555678898899876532 1111100    000111134455  7888777643  678999999975221 1111


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE--EEeecCCCEEEEEEc---cCCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVSKL---SSAY  278 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s---pdg~  278 (279)
                      ..+..     ......+++++ +|.++++....+.|.++|.. ++...  .+......+++++|.   ||++
T Consensus       206 ~~~~~-----~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          206 EIFVE-----QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             EEEEE-----SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             EEEec-----cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCC
Confidence            11110     12356789999 88887777778889999975 65532  222223568999998   8865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.36  E-value=0.0003  Score=54.47  Aligned_cols=175  Identities=9%  Similarity=0.046  Sum_probs=100.6

Q ss_pred             ceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC-CCc
Q 023672           62 FLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC  139 (279)
Q Consensus        62 ~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  139 (279)
                      ...++++.+ +++ |+.+...+.|..+|..++....... .            ...........       +++.+ +|+
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~-~------------~~~~~~~~p~~-------i~~d~~~G~  139 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLAT-S------------VDGVPFKWLYA-------VTVDQRTGI  139 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEES-E------------ETTEECSCEEE-------EEECTTTCC
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecc-c------------CCCCcccccce-------EEEecCCCE
Confidence            578999998 665 5555445558888876442210000 0            00000011223       35577 777


Q ss_pred             EEEEecC-----------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEE
Q 023672          140 VFASTTR-----------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFD  200 (279)
Q Consensus       140 ~l~s~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d  200 (279)
                      +.++-..                 ++.|..+|..+++.........      ....++|+|+++.|+.+  ..+.|.+|+
T Consensus       140 l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~------~p~gia~~~dg~~lyv~d~~~~~I~~~~  213 (322)
T 2fp8_A          140 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH------VPGGAEVSADSSFVLVAEFLSHQIVKYW  213 (322)
T ss_dssp             EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES------CCCEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc------cCcceEECCCCCEEEEEeCCCCeEEEEE
Confidence            6665432                 3678888987776433322111      45689999999876643  668999999


Q ss_pred             ccCCCC-ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC----------CCcEEEEecCCCeEEEEEeecC----
Q 023672          201 VHRPGR-DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHGQE----  265 (279)
Q Consensus       201 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~----  265 (279)
                      +..... ....+..    .   .+ ...+++++ +|.++++...          .+.|..+|. .++.+..+....    
T Consensus       214 ~~~~~~~~~~~~~~----~---~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~  283 (322)
T 2fp8_A          214 LEGPKKGTAEVLVK----I---PN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAG  283 (322)
T ss_dssp             SSSTTTTCEEEEEE----C---SS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTT
T ss_pred             CCCCcCCccceEEe----C---CC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCcc
Confidence            875211 1111111    1   12 67899999 7777766544          466888886 577777666442    


Q ss_pred             CCEEEEEE
Q 023672          266 GGVTHVSK  273 (279)
Q Consensus       266 ~~v~~~~~  273 (279)
                      ..++++++
T Consensus       284 ~~~~~~~~  291 (322)
T 2fp8_A          284 EHFEQIQE  291 (322)
T ss_dssp             SCCCEEEE
T ss_pred             ccceEEEE
Confidence            24555555

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.36  E-value=0.00062  Score=55.09  Aligned_cols=145  Identities=14%  Similarity=0.108  Sum_probs=86.7

Q ss_pred             eCcccccCC-CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCC
Q 023672          128 FPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRP  204 (279)
Q Consensus       128 ~~~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~  204 (279)
                      .|..++++| ++.+.++-..++.|+.+|..++.....+......   .....++|+|+++.|+ +- ..+.|+.+++...
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~---~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~  305 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK---GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE  305 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC---SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC---CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            466677888 6666666666788999999877653333222111   1234699999999666 44 6789999887632


Q ss_pred             CCceeeeeecccc--cC---------CCCCceEEEEE---------ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          205 GRDFEKYSTLKGN--KE---------GQAGIMSAIAF---------SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       205 ~~~~~~~~~~~~~--~~---------~~~~~v~~~~~---------sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ...+.....+...  ..         ..-.....+++         .+ ++.++++-..++.|+.++. ++.. .++.+.
T Consensus       306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~  382 (433)
T 4hw6_A          306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGRV-TTYAGR  382 (433)
T ss_dssp             TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSEE-EEEECC
T ss_pred             CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCCE-EEEEeC
Confidence            1111100111100  00         11224667899         66 7778888777888999985 5643 333321


Q ss_pred             ------------------CCCEEEEEEc-cCCC
Q 023672          265 ------------------EGGVTHVSKL-SSAY  278 (279)
Q Consensus       265 ------------------~~~v~~~~~s-pdg~  278 (279)
                                        -....+|++. ++|.
T Consensus       383 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  415 (433)
T 4hw6_A          383 GNSREWGYVDGELRSQALFNHPTSIAYDMKRKC  415 (433)
T ss_dssp             CTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             CCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence                              1237889998 5653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.34  E-value=0.00039  Score=52.23  Aligned_cols=175  Identities=10%  Similarity=0.083  Sum_probs=100.6

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ..+.+++|++++..|+ +-..++.|.++++.......                 +......       .|..+++++++.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-----------------~~~~~~~-------~p~~ia~d~~~~   91 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-----------------IIRQDLG-------SPEGIALDHLGR   91 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-----------------EECTTCC-------CEEEEEEETTTT
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-----------------EEECCCC-------CccEEEEEecCC
Confidence            3478999999766555 44457899999987532100                 1000111       233345566544


Q ss_pred             EE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-c--CCeEEEEEccCCCCceeeeeec
Q 023672          140 VF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y--NKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       140 ~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~--d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      .| ++-...+.|.++++..............     ....++++|++..|+ +. .  .+.|..+++...  ....+.  
T Consensus        92 ~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~-----~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~--  162 (267)
T 1npe_A           92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV-----NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILA--  162 (267)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCS-----SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEE--
T ss_pred             eEEEEECCCCEEEEEEcCCCCEEEEEECCCC-----CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEE--
Confidence            44 4445577899999865432222221111     567899999766555 43 2  468888888642  111111  


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                          .........++++|+++.++++-...+.|.++|+........+.. .....+++.
T Consensus       163 ----~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~  216 (267)
T 1npe_A          163 ----QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS  216 (267)
T ss_dssp             ----CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE
T ss_pred             ----ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEE
Confidence                111235789999994455666666778899999876544333332 223455554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.31  E-value=2.2e-05  Score=66.02  Aligned_cols=130  Identities=13%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccc--------cccc--------------------------------eee
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--------EITA--------------------------------AFS  178 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~--------~~~~--------------------------------v~~  178 (279)
                      ..++.++.+|.++++|.++|+.+..+.......        ...+                                -..
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  416 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP  416 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred             EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence            378889999999999999999887766542100        0000                                013


Q ss_pred             EEECCCCCEEEEe----------------------------------cCCeEEEEEccCCCCceeeeeecccccCCCCCc
Q 023672          179 VAFNPTGTKIFAG----------------------------------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (279)
Q Consensus       179 ~~~~~~~~~l~~~----------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (279)
                      ++++|+..++++.                                  .++.|..||+.++....+    .....     +
T Consensus       417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~----~~~~~-----~  487 (582)
T 1flg_A          417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWE----HKEHL-----P  487 (582)
T ss_dssp             CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEE----EEESS-----C
T ss_pred             ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEE----ecCCC-----C
Confidence            5677765555431                                  257788999988532222    11111     1


Q ss_pred             eEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCE-EEEEEccCCC
Q 023672          225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV-THVSKLSSAY  278 (279)
Q Consensus       225 v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v-~~~~~spdg~  278 (279)
                      +..-.... .+.+++.|+.||.++.||.++|+.+.+++...+.. .-+.+..||+
T Consensus       488 ~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          488 LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            11111222 35577789999999999999999998887543311 1144556664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.31  E-value=0.00074  Score=53.80  Aligned_cols=176  Identities=8%  Similarity=-0.023  Sum_probs=100.7

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC-
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-  138 (279)
                      ....+++|++.+..|+ +-...+.|..+++.......                 +.....       ..|..+++++.+ 
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-----------------~~~~~~-------~~p~glavd~~~g  171 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-----------------VVSTGL-------ESPGGLAVDWVHD  171 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-----------------EECSSC-------SCCCCEEEETTTT
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-----------------EEeCCC-------CCccEEEEEeCCC
Confidence            3477899997555554 54567888888887542110                 000000       123444556544 


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC-CeEEEEEccCCCCceeeeeecc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d-~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .++++-...+.|.+.++........+.....     ....++++|.+..|+ +- .. +.|..+++...  ....+  . 
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~-----~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~--~-  241 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLE-----KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRII--A-  241 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSCEEEECSSCS-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEE--E-
T ss_pred             eEEEEcCCCCeEEEEeCCCCceEEeecCCCC-----CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEE--E-
Confidence            4444555567888888865433322222211     567899999877776 43 44 78888888642  11111  1 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                         ...-.....++++|+++.++++-+..+.|..+|+........+........+|++
T Consensus       242 ---~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav  296 (386)
T 3v65_B          242 ---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  296 (386)
T ss_dssp             ---CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred             ---ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence               1112357899999845666666667788999998654333333323334566666

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=3.7e-05  Score=62.21  Aligned_cols=137  Identities=10%  Similarity=0.034  Sum_probs=85.2

Q ss_pred             eCcccccCC-CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-CC----eEEEEE
Q 023672          128 FPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NK----SVRVFD  200 (279)
Q Consensus       128 ~~~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~----~i~~~d  200 (279)
                      .|..++++| ++..|+.+...+.|+.+|+.++....... ...     ....++|+++++.|+++ . ++    .+.+++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~-----~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLS-----KVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCS-----CEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCC-----CcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            466677887 45566666555889999998776544433 222     57799999999966643 2 22    344444


Q ss_pred             ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCC
Q 023672          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~  278 (279)
                      ....-.....+..        ......++++|+++.++++-..++.|..++..++........ .......|+|+|+|+
T Consensus       212 ~~g~~~~~~~l~~--------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          212 RESGFKVITELTK--------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             GGGTSCSEEEEEE--------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             CCCceeeeeeecc--------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence            3321111111111        123567889996677777766788999999987764322222 223578999999997

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.25  E-value=7.3e-05  Score=64.27  Aligned_cols=83  Identities=8%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCce
Q 023672          147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM  225 (279)
Q Consensus       147 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v  225 (279)
                      +|.|..||+.+++.+..+..+.      ....-.+...+.+++.+ .|+.++.||.+++ +.+   ..+..   ++....
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~l---w~~~~---~~~~~~  520 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT------IFNGGTLSTAGNLVFEGSADGRVIAYAADTG-EKL---WEQPA---ASGVMA  520 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEE---EEEEC---SSCCCS
T ss_pred             ceeEEEEECCCCCeEeEccCCC------CccCccceECCCEEEEECCCCcEEEEECCCC-ccc---eeeeC---CCCccc
Confidence            4779999999999988887654      33334556667777766 9999999999995 332   22221   111122


Q ss_pred             EEEEEccCCCcEEEEEe
Q 023672          226 SAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       226 ~~~~~sp~~~~~l~~~~  242 (279)
                      .-+.|..++.+++++.+
T Consensus       521 ~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          521 APVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             CCEEEEETTEEEEEEEE
T ss_pred             CceEEEECCEEEEEEEe
Confidence            23566773444555443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.0011  Score=53.58  Aligned_cols=143  Identities=9%  Similarity=0.080  Sum_probs=82.7

Q ss_pred             eCcccccCC-CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCC
Q 023672          128 FPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRP  204 (279)
Q Consensus       128 ~~~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~  204 (279)
                      .|..++++| ++.++++-..++.|..++..++...........    .....++|+|++++|+ +. ..+.|..++....
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~----~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~  302 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS----GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK  302 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC----CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence            455667788 666666666778999999987664332222211    1467899999999666 44 7889999887642


Q ss_pred             CCceeeeeecccc--cCC---------CCCceE-EEEEcc-------CCCcEEEEEeCCCcEEEEecCCCeEEEEEeec-
Q 023672          205 GRDFEKYSTLKGN--KEG---------QAGIMS-AIAFSP-------THTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-  264 (279)
Q Consensus       205 ~~~~~~~~~~~~~--~~~---------~~~~v~-~~~~sp-------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-  264 (279)
                      ...+.....+...  ..+         .-.... .++..+       .++.++++-...+.|+.++ .++... .+.+. 
T Consensus       303 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~-~~~g~g  380 (430)
T 3tc9_A          303 TKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVT-TFAGRG  380 (430)
T ss_dssp             TTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE-EEEECC
T ss_pred             cccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEE-EEEeCC
Confidence            1111111111110  000         011233 455532       1466777666778899988 456543 33322 


Q ss_pred             --------C---------CCEEEEEEccC
Q 023672          265 --------E---------GGVTHVSKLSS  276 (279)
Q Consensus       265 --------~---------~~v~~~~~spd  276 (279)
                              .         ....++++.|+
T Consensus       381 ~~~~~G~~dG~~~~~~~~~~P~giavd~~  409 (430)
T 3tc9_A          381 SNGTSGYNDGDLRQEARFNHPEGIVYDEE  409 (430)
T ss_dssp             TTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred             CCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence                    1         15789999984

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.23  E-value=0.001  Score=52.19  Aligned_cols=176  Identities=9%  Similarity=0.004  Sum_probs=101.4

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC-C
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-S  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~  138 (279)
                      ....+++|++....|+ +-...+.|..+++.......                 +......       .|..+++++. +
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-----------------~~~~~~~-------~p~glavd~~~g  128 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-----------------VVSTGLE-------SPGGLAVDWVHD  128 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-----------------EECSSCS-------CCCEEEEETTTT
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-----------------EEeCCCC-------CccEEEEecCCC
Confidence            3478999997655555 44567888888887542110                 0000001       2333445554 4


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC-CeEEEEEccCCCCceeeeeecc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d-~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .++++-...+.|.+.++........+.....     ....++++|.+..|+ +- .. +.|..+++...  ...   .+.
T Consensus       129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~-----~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~---~~~  198 (349)
T 3v64_C          129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLE-----KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRR---IIA  198 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECTTCS-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCE---ESC
T ss_pred             eEEEEcCCCCeEEEEcCCCCceEEEEeCCCC-----CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcE---EEE
Confidence            4445555677899999875433322222211     567899999776666 43 44 78888888642  111   111


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                         ...-.....++++|+++.++++-...+.|..+|+........+........+|++
T Consensus       199 ---~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          199 ---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             ---ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence               1123357899999856666666666778999998654333333323344566666

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=0.00091  Score=51.37  Aligned_cols=185  Identities=14%  Similarity=0.072  Sum_probs=100.0

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ....+++|+++++++++-..++.|..||......                   ........       |..+++++++++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-------------------~~~~~~~~-------p~gia~~~dG~l   85 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHATVEGK-------VSGLAFTSNGDL   85 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEECSSE-------EEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-------------------EEEeCCCC-------ceeEEEcCCCcE
Confidence            4578899999998777766789999998764211                   00111122       334456888886


Q ss_pred             EEEecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee-ccc
Q 023672          141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST-LKG  216 (279)
Q Consensus       141 l~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~-~~~  216 (279)
                      +++.....  .|..+|..+++..........    .....++..+++..+++. .++.|+++|...+......... +..
T Consensus        86 ~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~----~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           86 VATGWNADSIPVVSLVKSDGTVETLLTLPDA----IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTC----SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             EEEeccCCcceEEEEcCCCCeEEEEEeCCCc----cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            66553322  466778777775433332111    123455555655545554 5888999987642101100000 000


Q ss_pred             -ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeE--EEEEeecCCCEEEEEEccCCC
Q 023672          217 -NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL--LYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       217 -~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~spdg~  278 (279)
                       .....-.....+  +|+++.++++-...+.|..+|+.. ++.  ...+.. .....++++.++|+
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~  224 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN  224 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC
Confidence             001111234455  783345666666778899999864 331  122221 12345677777774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.21  E-value=0.0009  Score=52.51  Aligned_cols=178  Identities=10%  Similarity=-0.031  Sum_probs=100.5

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      +..+|.+..++. +|+.+. ...|+..++......                  ...........+.|       ++....
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~------------------~~~~~~~~~~~l~~-------d~~~~~   86 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT------------------LLLNNLENAIALDF-------HHRREL   86 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE------------------EEECSCSCEEEEEE-------ETTTTE
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeE------------------EeecCCCceEEEEE-------eccccE
Confidence            345566666633 444443 345777777643211                  11122234556665       443444


Q ss_pred             -EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          141 -FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       141 -l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                       +.+-...+.|..+++..+.....+.....     .+..+++.+.+..|+ +- ..+.|.+.++... . ...+  +   
T Consensus        87 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~-~~~l--~---  154 (349)
T 3v64_C           87 VFWSDVTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-H-RKVL--L---  154 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETTSC-S-CEEE--E---
T ss_pred             EEEEeccCCceEEEecCCCCceEEEeCCCC-----CccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-c-eEEE--E---
Confidence             44445677899999876654333322211     456899998666655 44 6789999998752 1 1111  1   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCC-CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                       .........++++|.++.++++-... +.|..+++........+...-....+|+|+|++.
T Consensus       155 -~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          155 -WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             -CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred             -eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence             12234578999999556666665555 7788888764432222222234578899998653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.18  E-value=0.0026  Score=55.74  Aligned_cols=192  Identities=8%  Similarity=0.103  Sum_probs=113.4

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...|.++...++|. |..|+.++-|..|+..++....-.....     .     .. ......|.++..       ++++
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~-----~-----~~~~l~~~~v~~i~~-------d~~g  417 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQED-----E-----SARGIGSNNIKAVYV-------DEKK  417 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEE-------ETTT
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCC-----C-----cccCCCCccEEEEEE-------cCCC
Confidence            45699999998887 4457777778999987653311000000     0     00 011245666654       4566


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      ..|..|+.++-|..+|..+++... +...........|.++...+++.+.+++. +.+.+||..+.  .+..........
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~--~~~~~~~~~~~~  493 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR--SFTTIEKEKDGT  493 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT--EEEECCBCTTCC
T ss_pred             CEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC--eEEEcccccccc
Confidence            646667776779999998876433 32111101122688999999888777655 56888998762  111111100000


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-------ecCCCEEEEEEccCCC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-------GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~spdg~  278 (279)
                      .-....|.++...+ ++.+.+... + -|..||..+++.  .+.       .....|.++...++|+
T Consensus       494 ~~~~~~i~~i~~d~-~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          494 PVVSKQITTLFRDS-HKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI  555 (795)
T ss_dssp             BCCCCCEEEEEECT-TCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred             ccCCceEEEEEECC-CCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence            11235688999988 776665544 4 488899877765  332       1234688888888775

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.14  E-value=0.00032  Score=59.05  Aligned_cols=116  Identities=13%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCcc--------ccccc--------------------------eeeEEECCC
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV--------DEITA--------------------------AFSVAFNPT  184 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~~~--------------------------v~~~~~~~~  184 (279)
                      ..++.++.+|.+.++|.++|+.+.........        ....+                          -..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            46777889999999999999988776532200        00000                          124567776


Q ss_pred             CCEEEEe----------------------------------------cCCeEEEEEccCCCCceeeeeecccccCCCCCc
Q 023672          185 GTKIFAG----------------------------------------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (279)
Q Consensus       185 ~~~l~~~----------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (279)
                      ..++++.                                        ..+.|..||+.++....+    ....     .+
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~----~~~~-----~~  474 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWE----KMER-----FA  474 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEE----EEES-----SC
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeE----ecCC-----CC
Confidence            5555431                                        235778888877422121    1110     01


Q ss_pred             eEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       225 v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ...-.... .+.+++.++.|+.++.||.++|+.+.+++..
T Consensus       475 ~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          475 VWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            11111222 4567777999999999999999999888744

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.13  E-value=8.3e-05  Score=62.44  Aligned_cols=115  Identities=13%  Similarity=0.104  Sum_probs=73.3

Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccc--------cccce--------------------------eeEEECCCC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--------EITAA--------------------------FSVAFNPTG  185 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~--------~~~~v--------------------------~~~~~~~~~  185 (279)
                      .++.++.+|.+.++|..+|+.+..........        ...++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            57778889999999999999887765432100        00011                          246788887


Q ss_pred             CEEEEe-c-------------------------------------CCeEEEEEccCCCCceeeeeecccccCCCCCceEE
Q 023672          186 TKIFAG-Y-------------------------------------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (279)
Q Consensus       186 ~~l~~~-~-------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (279)
                      .++++. .                                     ++.|..||+.++. ..   .....     ...+.+
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~-~~---W~~~~-----~~~~~~  468 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK-AK---WTKWE-----KFAAWG  468 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC-EE---EEEEE-----SSCCCS
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC-EE---EEecC-----CCCccc
Confidence            766643 2                                     3678889988742 22   12211     111222


Q ss_pred             EEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       228 ~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      ..+.. .+..++.++.||.|+.+|.++++.+.++...
T Consensus       469 ~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          469 GTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             BCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            22233 3456777899999999999999999888743

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.13  E-value=0.00033  Score=55.45  Aligned_cols=106  Identities=10%  Similarity=0.142  Sum_probs=63.0

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      ++..+++++.++.|..+|..+++........                  ..+..   .|   ..  .+..++.++.++.|
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------~~~~~---~p---~~--~~~~v~v~~~~g~l  155 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------GEALS---RP---VV--SDGLVLIHTSNGQL  155 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECS------------------SCCCS---CC---EE--ETTEEEEECTTSEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------CceEc---CC---EE--ECCEEEEEcCCCeE
Confidence            4557888888999999999987653221100                  00000   00   00  23367778889999


Q ss_pred             EEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      ..+|..+++.+..................... ++ .++.+ .++.+..+|..++
T Consensus       156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----CCCCCCEEE-TT-EEEECCTTTEEEEEETTTC
T ss_pred             EEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC-EEEEEcCCCEEEEEECCCC
Confidence            99999999988877654321000000122222 33 45545 7899999999874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.09  E-value=0.0023  Score=50.96  Aligned_cols=138  Identities=9%  Similarity=-0.064  Sum_probs=82.5

Q ss_pred             ceEEEEeeCcccccCCC-CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEE
Q 023672          121 SVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR  197 (279)
Q Consensus       121 ~v~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~  197 (279)
                      ....+.|       ++. +.++++-...+.|..+++..+.....+.....     .+..+++.+.+..|+ +- ..+.|.
T Consensus       117 ~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~~~~I~  184 (386)
T 3v65_B          117 NAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIE  184 (386)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETTTTEEE
T ss_pred             ccEEEEE-------ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCCCCeEE
Confidence            4555665       433 44444545677899999886654333332221     456799998766665 44 677888


Q ss_pred             EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-CcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      +.++...  ....+  +    .........++++|.++.++++-... +.|..+++........+...-....+|+|+|+
T Consensus       185 ~~~~dg~--~~~~l--~----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~  256 (386)
T 3v65_B          185 VANLDGA--HRKVL--L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA  256 (386)
T ss_dssp             ECBTTSC--SCEEE--E----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGG
T ss_pred             EEeCCCC--ceEEe--e----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCC
Confidence            8888742  11111  1    12234578999998555555555555 67888887654333333333345789999976


Q ss_pred             CC
Q 023672          277 AY  278 (279)
Q Consensus       277 g~  278 (279)
                      +.
T Consensus       257 ~~  258 (386)
T 3v65_B          257 GR  258 (386)
T ss_dssp             GT
T ss_pred             CC
Confidence            53

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.06  E-value=0.0022  Score=49.73  Aligned_cols=115  Identities=9%  Similarity=0.103  Sum_probs=72.8

Q ss_pred             EEEEecCCCcEEEEECC-------CCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCC-Cceee
Q 023672          140 VFASTTRDHPIHLWDAT-------TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPG-RDFEK  210 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~-~~~~~  210 (279)
                      +++....+|.+..|++.       +.+.++++....      .+..+...+....|+.+ .+..|..+|.+... .....
T Consensus       145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~  218 (355)
T 3amr_A          145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTV  218 (355)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEE
T ss_pred             EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceE
Confidence            67778888999998883       335566776654      67789999988888877 77667667754311 11122


Q ss_pred             eeecccccCCCCCceEEEEEccC-CCc-EEEEEe-CCCcEEEEecC-CCeEEEEEe
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPT-HTG-MLAIGS-YSQTSAIYRED-NMELLYVLH  262 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~-~~~-~l~~~~-~dg~i~~wd~~-~~~~~~~~~  262 (279)
                      +..+.  ...-...+..|++-+. ++. +|++++ .++++.+||.. +.+.+..+.
T Consensus       219 v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          219 IDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            22221  1122235778888431 333 455544 67789999996 667777774

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.05  E-value=0.00052  Score=54.31  Aligned_cols=164  Identities=6%  Similarity=-0.015  Sum_probs=90.7

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (279)
                      .+..+++++.++.|..+|..+++...........    .    ........+...   |     ..++..++.++.++.|
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~----~----~~~~~~~~~~~~---~-----~~~~~~v~v~~~~g~l  115 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKD----G----WFSKEPALLSGG---V-----TVSGGHVYIGSEKAQV  115 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCSCCCCCEEEE---E-----EEETTEEEEEETTSEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCcccc----c----cccccCcccccC---c-----eEeCCEEEEEcCCCEE
Confidence            3567888888999999999887654322111000    0    000001111111   0     1134467778889999


Q ss_pred             EEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                      ..+|..+|+.+........     ........ ++..++.+.++.|..+|..++. ..............  ........
T Consensus       116 ~a~d~~tG~~~W~~~~~~~-----~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~~~--~~~~~~~~  186 (376)
T 3q7m_A          116 YALNTSDGTVAWQTKVAGE-----ALSRPVVS-DGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSLSL--RGESAPTT  186 (376)
T ss_dssp             EEEETTTCCEEEEEECSSC-----CCSCCEEE-TTEEEEECTTSEEEEEETTTCC-EEEEEECCC-------CCCCCCEE
T ss_pred             EEEECCCCCEEEEEeCCCc-----eEcCCEEE-CCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCceee--cCCCCcEE
Confidence            9999999998877765542     11112222 3444444589999999998852 22111110000000  00011222


Q ss_pred             ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       231 sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .  + ..++.++.++.|..+|..+++.+....
T Consensus       187 ~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          187 A--F-GAAVVGGDNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             E--T-TEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred             E--C-CEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            2  2 357778889999999999998876654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.00  E-value=0.0064  Score=53.02  Aligned_cols=169  Identities=7%  Similarity=0.002  Sum_probs=94.2

Q ss_pred             CCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ...+.+|+|++....| ++-...+.|+.+++.........             ..+.....       ..|..+++++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~-------------~~vi~~~l-------~~P~GLAvD~~~  482 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-------------DTVISRDI-------QAPDGLAVDWIH  482 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-------------EEEECSSC-------SCCCEEEEETTT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce-------------eEEEecCC-------CCcceeeeeecC
Confidence            3557889999855544 45555678888888642110000             00100011       134444556555


Q ss_pred             cE-EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-c-CCeEEEEEccCCCCceeeeeec
Q 023672          139 CV-FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y-NKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       139 ~~-l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~-d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      .. +++-...+.|.+.++........+.....     .+..|+++|.+..|+ +- . .+.|.+.++...  ....+  +
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~-----~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--~~~~l--v  553 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSL--V  553 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEE--E
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC-----CcceEEEecCCCCEEEecCCCCCeEEEEecCCC--ceEEE--E
Confidence            44 44445678899999875543333322222     567999999866666 43 2 378888888642  11111  1


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  261 (279)
                          ...-.....|++++.++.++++-...+.|...++........+
T Consensus       554 ----~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          554 ----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ----eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence                1223467899999845555555556678999998654433333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.99  E-value=0.00096  Score=51.24  Aligned_cols=177  Identities=10%  Similarity=0.091  Sum_probs=100.6

Q ss_pred             CceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      -.-.+++|++....|..++ ..++|..||...+..... ....... .        ......+..+.|.    ...|+++
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~-~--------g~~~~~~sGl~~~----~~D~~gr   78 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASS-N--------GDGEQQMSGLSLL----THDNSKR   78 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCC-S--------SCCSEEEEEEEES----SSSSCCE
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccc-c--------CCCcceeeEEEEe----ccCCCCc
Confidence            3345789988555555555 799999999875432111 0000000 0        0000012334331    0046666


Q ss_pred             EEEEec-------------CCCcEEEEECC---CCeeeEEEeccCccc--------cccceeeEEECCCCCEEEEe-cC-
Q 023672          140 VFASTT-------------RDHPIHLWDAT---TGLLRCTYRAYDAVD--------EITAAFSVAFNPTGTKIFAG-YN-  193 (279)
Q Consensus       140 ~l~s~~-------------~d~~i~i~d~~---~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~d-  193 (279)
                      ++++..             .+..|..+|+.   +++.+..........        ....+..++..++|+..+++ .. 
T Consensus        79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred             EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence            666533             25779999999   787776655321110        11247899999999988855 66 


Q ss_pred             CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                      +.|..++...  +....+.. ...........+.++++| ++..|++....|.|..+|+.+.
T Consensus       159 ~~I~rV~pdG--~~~~~~~~-~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          159 PAIARVSADG--KTVSTFAW-ESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CEEEEECTTS--CCEEEEEE-CCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSS
T ss_pred             CeEEEEeCCC--CEEeeeee-cCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCC
Confidence            7766666653  22222211 111112233477999999 7777777666999999997743

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.99  E-value=0.00014  Score=62.65  Aligned_cols=176  Identities=10%  Similarity=-0.042  Sum_probs=98.6

Q ss_pred             eEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           63 LKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        63 v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      ...|++.+.+ +++++-...+.|.++++.......                 + ...+      ...|..++++|.+..|
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~-----------------l-~~~~------~~~P~giavDp~~g~l  510 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT-----------------L-FREQ------GSKPRAIVVDPVHGFM  510 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEE-----------------E-CCCS------SCCCCCEECCSSSSCC
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEE-----------------E-EeCC------CCCcceEEEccCCCcE
Confidence            4567887544 444454556788888876432100                 0 0000      0135556677766555


Q ss_pred             EEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccc
Q 023672          142 ASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       142 ~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      +.+..  .+.|..+++.... ...+....    ......|+|+|++..|+ +- ..+.|.++|+...  ....+...   
T Consensus       511 y~td~~~~~~I~~~~~dG~~-~~~l~~~~----l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~--~~~~~~~~---  580 (699)
T 1n7d_A          511 YWTDWGTPAKIKKGGLNGVD-IYSLVTEN----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILED---  580 (699)
T ss_dssp             EECCCSSSCCEEBCCSSSCC-CCEESCSS----CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS--CCEEECCC---
T ss_pred             EEcccCCCCeEEEEeCCCCC-eeEEEeCC----CCCccEEEEeccCCEEEEEecCCCeEEEEccCCC--ceEEEEec---
Confidence            55443  2678777765332 22222111    11567899999876666 43 6788999998742  11211111   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                       .........|++.. + .++++....+.|..+|..+++.+..+......+++|++.+
T Consensus       581 -~~~~~~P~glavd~-~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~  635 (699)
T 1n7d_A          581 -EKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFH  635 (699)
T ss_dssp             -SSSCSSCCCCEEET-T-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCS
T ss_pred             -CCcCCCceEeEEEC-C-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeC
Confidence             11112234556655 3 6677777778899999988888777754333445555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.98  E-value=0.0072  Score=52.97  Aligned_cols=189  Identities=10%  Similarity=0.012  Sum_probs=111.0

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...|.++...++++.|..|+.++-|.+||..++....-...      . .      ......|.++..       .+++.
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~------~-~------~l~~~~v~~i~~-------d~~g~  464 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR------N-S------QLVNENVYAILP-------DGEGN  464 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT------T-S------CCSCSCEEEEEE-------CSSSC
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC------C-C------CcCCCeeEEEEE-------CCCCC
Confidence            46799999988888566778777799999886543211000      0 0      012245666644       55666


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEecc-CccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccccc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      +.+.. .+ -|.+||..+++........ ...-....|.++...++|.+.+++. +.+..||..+. . + .........
T Consensus       465 lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~-~-~-~~~~~~~~~  538 (795)
T 4a2l_A          465 LWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL-D-I-QKASILPVS  538 (795)
T ss_dssp             EEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT-E-E-EECCCSCSC
T ss_pred             EEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC-e-E-EEecCCCCC
Confidence            55544 34 4888998877643322110 0000112688999999998877666 66888998763 1 1 111000010


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec----CCCEEEEEEccCCC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVSKLSSAY  278 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~spdg~  278 (279)
                      ......|.++...+ ++.+.++.. + -|..||..+++.. .+...    ...|.++...++|+
T Consensus       539 ~l~~~~i~~i~~d~-~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~  598 (795)
T 4a2l_A          539 NVTKLFTNCIYEAS-NGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGR  598 (795)
T ss_dssp             GGGGSCEEEEEECT-TSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSC
T ss_pred             CCCCCeeEEEEECC-CCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCC
Confidence            12345788999988 777665443 4 4788998776543 33221    23688888877775

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.94  E-value=0.0013  Score=52.25  Aligned_cols=139  Identities=13%  Similarity=0.195  Sum_probs=87.5

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCc---------
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD---------  207 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~---------  207 (279)
                      ++..++.+- ++.||..++......+.+....... ...+..+..+|+|.+|+...+..|.|..+-.+...         
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~-f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLV-LDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCC-CCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccc-cCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            444454443 5788888887554555555542000 01467899999999999878889999998742211         


Q ss_pred             eeee-eecccccCCCCCceEEEEEccC--CCcEEEEEeCCCcEEEEecCCC--eEEEEEe---------ecCCCEEEEEE
Q 023672          208 FEKY-STLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNM--ELLYVLH---------GQEGGVTHVSK  273 (279)
Q Consensus       208 ~~~~-~~~~~~~~~~~~~v~~~~~sp~--~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~---------~~~~~v~~~~~  273 (279)
                      .+.. ..+.........+|..+.|+|.  ++..|++-..|+.|++||+...  ++. .+.         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence            1111 1111111113578999999993  2347888899999999999752  222 332         12257899999


Q ss_pred             ccCCC
Q 023672          274 LSSAY  278 (279)
Q Consensus       274 spdg~  278 (279)
                      .++|-
T Consensus       188 g~~~l  192 (452)
T 3pbp_A          188 SKDGL  192 (452)
T ss_dssp             CTTSS
T ss_pred             cCCCc
Confidence            98764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.92  E-value=0.0052  Score=49.18  Aligned_cols=181  Identities=6%  Similarity=0.004  Sum_probs=99.3

Q ss_pred             CCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC-C
Q 023672           60 NNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-T  137 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~  137 (279)
                      -..+.+|+|++....|+ +-...+.|..+++........             ...+..........       +++++ .
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~-------------~~~~~~~~~~~p~g-------lavD~~~  170 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------YDTVISRDIQAPDG-------LAVDWIH  170 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC-------------CEEEECSSCSCEEE-------EEEETTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc-------------ceEEEeCCCCCccc-------EEEEecC
Confidence            45688999998665555 445578888888864210000             00011111112223       34455 4


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCceeeeeec
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +++.++-...+.|.+.++........+.....     .+..|+++|.+..|+ +-  ..+.|...++...  ....+  .
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~-----~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--~~~~~--~  241 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSL--V  241 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEEECSSC-----CEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--SCEEE--E
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEEeCCCC-----CcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--ccEEE--E
Confidence            44555555677899999876544333332222     567999999776666 33  2478888888642  11111  1


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee--cCCCEEEEEE
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVSK  273 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~  273 (279)
                          ...-.....|+++|+++.++++-...+.|..+|+........+..  .-....+|++
T Consensus       242 ----~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          242 ----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred             ----ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence                112245789999984555555556677899999865443323322  1223455555

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.90  E-value=9.5e-05  Score=64.30  Aligned_cols=110  Identities=12%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             ccC-CCCcEEEEecC-CC----cEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE-EecC-----CeEEEE
Q 023672          133 ASD-PTSCVFASTTR-DH----PIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVF  199 (279)
Q Consensus       133 ~~~-~~~~~l~s~~~-d~----~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-----~~i~~~  199 (279)
                      .+| |||++|+.+.. +|    .|+++|+.++ +.+.. .. ..     ....+.|+|||+.|+ +..+     ..|+++
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~-~~-----~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV-SG-----TNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE-EE-----ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc-cC-----ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            348 89998875532 22    5999999998 63211 00 00     234789999998877 4443     357888


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CCcEEEEecCCC
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNM  255 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg~i~~wd~~~~  255 (279)
                      ++.++...-..+..     .........+.|+| ++.+|+..+.   ...|+++|+.++
T Consensus       253 ~lgt~~~~~~lv~~-----~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          253 VMGKLQSEDVCLYE-----EHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             ETTSCGGGCEEEEE-----CCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             ECCCCchhcEEEEe-----cCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCC
Confidence            88663211111111     11223456889999 7777665542   335888998775

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.87  E-value=0.0067  Score=53.05  Aligned_cols=186  Identities=10%  Similarity=0.030  Sum_probs=107.6

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...|.++...+++.+. .|+.++-+..++..++....-...               ......|.++..       .+++.
T Consensus       406 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~---------------~~~~~~v~~i~~-------d~~g~  462 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELE---------------KNELLDVRVFYE-------DKNKK  462 (781)
T ss_dssp             CSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECCST---------------TTCCCCEEEEEE-------CTTSE
T ss_pred             CcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccC---------------CCCCCeEEEEEE-------CCCCC
Confidence            4678899888887644 467666788888775533110000               012235666543       55665


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      +.+ |+. +-|..+|..+++................|.++...++|.+.++..++.+..||..+.  .+.   .+.....
T Consensus       463 lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~~---~~~~~~~  535 (781)
T 3v9f_A          463 IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ--LVR---KFNQYEG  535 (781)
T ss_dssp             EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC--EEE---EECTTTT
T ss_pred             EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC--eEE---EccCCCC
Confidence            444 444 458889988776544332221101123688999999998888776455777887652  122   2211111


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec----CCCEEEEEEccCCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVSKLSSAY  278 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~spdg~  278 (279)
                      -....|.++...+ ++.+.++. .+|.|..||..+++. ..+...    ...|.++...++|+
T Consensus       536 l~~~~i~~i~~d~-~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~  595 (781)
T 3v9f_A          536 FCSNTINQIYRSS-KGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGN  595 (781)
T ss_dssp             CSCSCEEEEEECT-TSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSC
T ss_pred             CCCCeeEEEEECC-CCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCC
Confidence            2245688999888 77665554 467558888876653 233221    23466777666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.83  E-value=0.0034  Score=53.72  Aligned_cols=57  Identities=14%  Similarity=0.146  Sum_probs=36.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGI   94 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~   94 (279)
                      .+.+||..+........   ....+.....++++..+++.++.|+. +..+.+||..+...
T Consensus       220 ~~~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W  277 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTV---TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  277 (656)
T ss_dssp             EEEEECTTTCCBCCCEE---EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             EEEEEeCCCCcEEeCcc---cCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCce
Confidence            46678877766432211   22233444556788899999999884 56899999876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.82  E-value=0.0021  Score=53.96  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       146 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      .++.|..||+.+++.+..+....      .+....+...+..++.+ .|+.++.+|.+++
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG  495 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKF------AAWGGTLYTKGGLVWYATLDGYLKALDNKDG  495 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             CCCeEEEEECCCCCEEEEecCCC------CccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence            35789999999999888876543      22222223334555545 8999999999984

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.82  E-value=0.00025  Score=61.02  Aligned_cols=162  Identities=8%  Similarity=-0.002  Sum_probs=90.9

Q ss_pred             CceEEEEEccCCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC-C
Q 023672           61 NFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-S  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~  138 (279)
                      ..+.+|+|++.+..|+.+ ...+.|..+++.+.......  .            .....+      ...|..+++++. +
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~--~------------~~i~~~------~~~P~glavD~~~g  465 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--D------------TVISRD------IQAPDGLAVDWIHS  465 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC--C------------CBCCSC------C--CCCEECCCSSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce--E------------EEEeCC------CCCcceEEEEeeCC
Confidence            346688999866666544 45678888888741100000  0            000000      013444566644 4


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--c-CCeEEEEEccCCCCceeeeeecc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .++++-...+.|.++++........+.....     ....++++|.+..|+.+  . .+.|.++++...  ....+  + 
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~-----~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~--~~~~l--~-  535 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSL--V-  535 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEEEECCCSSC-----CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC--CCCEE--S-
T ss_pred             cEEEEeccCCeEEEEecCCCceEEEEeCCCC-----CcceEEEccCCCcEEEcccCCCCeEEEEeCCCC--CeeEE--E-
Confidence            4445545677899999875543332222111     45789999976665533  2 377888877642  11111  1 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                         ...-.....|+|+|+++.++++-+..+.|..+|+...
T Consensus       536 ---~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          536 ---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             ---CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             ---eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence               1112346689999955666666667788999998643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.82  E-value=0.0062  Score=47.04  Aligned_cols=178  Identities=7%  Similarity=0.018  Sum_probs=100.3

Q ss_pred             ceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC-CCc
Q 023672           62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC  139 (279)
Q Consensus        62 ~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  139 (279)
                      .+.+++|++....| .+-...+.|..+++.......                .+....-       ..|..+++++ .+.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~----------------~~~~~~l-------~~p~glavd~~~g~   92 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ----------------NVVVSGL-------LSPDGLACDWLGEK   92 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC----------------EEEEECC-------SCCCEEEEETTTTE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE----------------EEEcCCC-------CCccEEEEEcCCCe
Confidence            46789999855444 455567889889887542100                0001000       1233445565 344


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCceeeeeeccc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      ++++-...+.|.++++........+.....     ....++++|.+..|+ +-  ..+.|..+++...  ....+  .  
T Consensus        93 ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~-----~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~--~--  161 (318)
T 3sov_A           93 LYWTDSETNRIEVSNLDGSLRKVLFWQELD-----QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFII--I--  161 (318)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSCS-----SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC--SCEEE--E--
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCC-----CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC--CeEEE--E--
Confidence            445555677899999875433222222211     567899999766666 43  3578888887641  11111  1  


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                        ...-.....++++|+++.++++-+..+.|..+|+........+........++++..
T Consensus       162 --~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          162 --NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET
T ss_pred             --ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC
Confidence              111235689999995566666666778899999864333222222233455666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.81  E-value=0.0012  Score=50.73  Aligned_cols=146  Identities=10%  Similarity=0.016  Sum_probs=87.4

Q ss_pred             eCcccccCCC-CcEEEEecCCCcEEEEECCCCeeeEEEeccCc---cccccceeeEEE---CCCCCEEEEec--------
Q 023672          128 FPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAF---NPTGTKIFAGY--------  192 (279)
Q Consensus       128 ~~~~~~~~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~v~~~~~---~~~~~~l~~~~--------  192 (279)
                      .|.+..+++. +.++++.-..++|..||...+..... ....-   ......+..+.|   .|+++++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3445555554 44455555789999999976644333 22210   111124579999   68887777542        


Q ss_pred             ------CCeEEEEEcc---CCCCceeeeeecccccC------C-CCCceEEEEEccCCCcEEEEEeCC-CcEEEEecCCC
Q 023672          193 ------NKSVRVFDVH---RPGRDFEKYSTLKGNKE------G-QAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNM  255 (279)
Q Consensus       193 ------d~~i~~~d~~---~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~sp~~~~~l~~~~~d-g~i~~wd~~~~  255 (279)
                            +..|..||+.   ++. ..... .+.....      + -...+..++..+ +|+..++++.. +.|...+....
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~-~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSK-PVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCC-CSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC
T ss_pred             ccccCCCCEEEEEcCCcCCCCC-EEEEe-cCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC
Confidence                  5789999998   532 22111 1110000      1 123478999999 89999999888 88777776533


Q ss_pred             eEEEEEeec------CCCEEEEEEccCCC
Q 023672          256 ELLYVLHGQ------EGGVTHVSKLSSAY  278 (279)
Q Consensus       256 ~~~~~~~~~------~~~v~~~~~spdg~  278 (279)
                       .+..+-..      ....++|+++|||+
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~  197 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSN  197 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTT
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCC
Confidence             33322211      12467999999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.79  E-value=0.00094  Score=54.04  Aligned_cols=137  Identities=11%  Similarity=-0.017  Sum_probs=81.5

Q ss_pred             eCcccccCCC--CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecC----C-eEEEEE
Q 023672          128 FPHMSASDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN----K-SVRVFD  200 (279)
Q Consensus       128 ~~~~~~~~~~--~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----~-~i~~~d  200 (279)
                      .|..++++|+  ...|+.+...+.|+.+|+.++....... ...     .+..++|+++++++++...    . .+..++
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~-----~P~giavd~dG~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIG-----QCADVNFTLNGDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCS-----CEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCC-----CccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence            4666777884  3445555444889999998877654433 221     5789999999994444432    1 233333


Q ss_pred             ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec--CCCEEEEEEccCCC
Q 023672          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVSKLSSAY  278 (279)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~spdg~  278 (279)
                      .... ....  ..+     ........++++|+++.++++-..++.|+.+|..++.....+...  ......++|+|+|+
T Consensus       214 ~~~~-~~~~--~~~-----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          214 RASG-FTER--LSL-----CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             GGGT-TCCE--EEE-----EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             CCCC-eecc--ccc-----cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence            3221 1100  111     012335678899856666666667788999999877763333221  22345799999986

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.79  E-value=0.0089  Score=50.42  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=96.1

Q ss_pred             EEEccCCCe----EEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           66 IKWSPDGSS----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        66 ~~~~~~~~~----l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      ++++|.+..    |++++.|+.|.-+|..+++..........             ..+..+.   -.|   .+ .++ .+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~-------------~~~~~~~---ssP---~v-~~g-~V  169 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDI-------------KVGSTLT---IAP---YV-VKD-KV  169 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCG-------------GGTCBCC---SCC---EE-ETT-EE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCC-------------Cccceee---cCC---EE-ECC-EE
Confidence            445443334    88888899999999998876433211100             0000000   000   00 033 34


Q ss_pred             EEec------CCCcEEEEECCCCeeeEEEeccCcccc--------------------------------ccce-eeEEEC
Q 023672          142 ASTT------RDHPIHLWDATTGLLRCTYRAYDAVDE--------------------------------ITAA-FSVAFN  182 (279)
Q Consensus       142 ~s~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~  182 (279)
                      +.++      .++.|+.+|.++|+.+..+........                                ...+ ..+++.
T Consensus       170 ~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d  249 (599)
T 1w6s_A          170 IIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD  249 (599)
T ss_dssp             EECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE
T ss_pred             EEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEe
Confidence            4443      478999999999999888765432100                                0000 135666


Q ss_pred             CCCCEEEEe-cC----------------CeEEEEEccCCCCceeeeeecccc---cCCCCCceEEEEEc-cCCC---cEE
Q 023672          183 PTGTKIFAG-YN----------------KSVRVFDVHRPGRDFEKYSTLKGN---KEGQAGIMSAIAFS-PTHT---GML  238 (279)
Q Consensus       183 ~~~~~l~~~-~d----------------~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s-p~~~---~~l  238 (279)
                      +....++.+ .+                +.|..+|.+++ +..-..+.....   +.....++. +... . ++   ..+
T Consensus       250 ~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v  326 (599)
T 1w6s_A          250 PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLL  326 (599)
T ss_dssp             TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEE
T ss_pred             CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ceeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEE
Confidence            776666644 33                48999999985 322222221000   001112222 2332 4 56   578


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEe
Q 023672          239 AIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       239 ~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      +.++.+|.++++|.++|+++....
T Consensus       327 ~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          327 THPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCcEEEEEECCCCCEeeccc
Confidence            888999999999999999887665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.78  E-value=0.0045  Score=53.11  Aligned_cols=168  Identities=13%  Similarity=0.087  Sum_probs=95.1

Q ss_pred             CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec------
Q 023672           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------  145 (279)
Q Consensus        72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------  145 (279)
                      +..+++++.|+.|..+|..+++.........                ......+...|   .+ .++ .++.+.      
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~~~~~~~~~~P---~v-~~~-~v~vg~~~~~~~  175 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTD----------------PAKPYSITGAP---RV-VKG-KVIIGNGGAEYG  175 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSC----------------TTSSCBCCSCC---EE-ETT-EEEECCBCTTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCC----------------CCCcceecCCC---EE-ECC-EEEEeCCCCCcC
Confidence            4578888889999999999887643321110                00000000000   00 033 344443      


Q ss_pred             CCCcEEEEECCCCeeeEEEeccCc-cc-------------------------cccceeeEEECCCCCEEEEe-cCC----
Q 023672          146 RDHPIHLWDATTGLLRCTYRAYDA-VD-------------------------EITAAFSVAFNPTGTKIFAG-YNK----  194 (279)
Q Consensus       146 ~d~~i~i~d~~~~~~~~~~~~~~~-~~-------------------------~~~~v~~~~~~~~~~~l~~~-~d~----  194 (279)
                      .++.|..+|..+|+.+..+..... ..                         .......++++|+...++.+ .++    
T Consensus       176 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          176 VRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccc
Confidence            258999999999999888764211 00                         00011247888887777755 444    


Q ss_pred             ---------------eEEEEEccCCCCceeeeeecccccC--CCCCceEEEEEccCCCc---EEEEEeCCCcEEEEecCC
Q 023672          195 ---------------SVRVFDVHRPGRDFEKYSTLKGNKE--GQAGIMSAIAFSPTHTG---MLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       195 ---------------~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~---~l~~~~~dg~i~~wd~~~  254 (279)
                                     .|..+|.+++. ............-  ....++....+.. ++.   .++.++.+|.++++|..+
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGK-LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCc-eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCC
Confidence                           49999999853 2222211100000  0012333333444 454   688999999999999999


Q ss_pred             CeEEEEEe
Q 023672          255 MELLYVLH  262 (279)
Q Consensus       255 ~~~~~~~~  262 (279)
                      |+++...+
T Consensus       334 G~~l~~~~  341 (668)
T 1kv9_A          334 GKLISAEK  341 (668)
T ss_dssp             CCEEEEEE
T ss_pred             CCEecccc
Confidence            99886554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.75  E-value=0.0082  Score=46.31  Aligned_cols=181  Identities=7%  Similarity=0.008  Sum_probs=99.0

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC-C
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-S  138 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~  138 (279)
                      ....+++|++.+..|+ +-..++.|..+++.+......             ...+.....       -.|..+++++. +
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-------------~~~~~~~~~-------~~p~glavd~~~~   89 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------YDTVISRDI-------QAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------CEEEECSSC-------SCCCEEEEETTTT
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-------------cEEEEeCCC-------CCcCEEEEeecCC
Confidence            4578999998665554 555578999999874210000             000000000       12333455544 4


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC-CeEEEEEccCCCCceeeeeecc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d-~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .+.++-...+.|.++++........+.....     ....++++|.+..|+ +. .. +.|..+++..  .....+.   
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-----~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG--~~~~~~~---  159 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLV---  159 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEEEEE---
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEECCCC-----CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC--CCeEEEE---
Confidence            4445546678899999875443333322211     567899999776666 44 33 7888888864  2111111   


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee--cCCCEEEEEEc
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVSKL  274 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s  274 (279)
                         ...-.....++++|+++.++++-+..+.|..+|+........+..  .-....+|++.
T Consensus       160 ---~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          160 ---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             ---ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE
Confidence               112245789999984556666666677899999864332222221  12345666664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.0013  Score=53.72  Aligned_cols=142  Identities=11%  Similarity=0.016  Sum_probs=84.5

Q ss_pred             CcccccCC-CCcEEEEec-CCCcEEEEECCCCeeeEEEeccCccccccceeeEEE-------CCCCCEEEEe-cCC----
Q 023672          129 PHMSASDP-TSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF-------NPTGTKIFAG-YNK----  194 (279)
Q Consensus       129 ~~~~~~~~-~~~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~-~d~----  194 (279)
                      |..++++| +...|+.+. ..+.|++.|+.++..........  .....+..++|       ++++..|++. ..+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            44567787 344455444 34679999998877665544322  12225789999       9999866644 222    


Q ss_pred             ---eEEEEEccCCCCceee---eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC-------CCeE----
Q 023672          195 ---SVRVFDVHRPGRDFEK---YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-------NMEL----  257 (279)
Q Consensus       195 ---~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~-------~~~~----  257 (279)
                         .|.+++....+ .+..   ...+. .    -.....++.+|+++.++++-..++.|..+|+.       ++..    
T Consensus       219 ~~~~V~~i~r~~~G-~~~~~~~~~~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          219 ESPSVYIIKRNADG-TFDDRSDIQLIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GEEEEEEEECCTTS-CCSTTSCEEEEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cCceEEEEecCCCC-ceeecccceeec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence               26666633311 1110   01111 1    11345778999667777777788889999997       5543    


Q ss_pred             -------EEE-Eee-cCCCEEEEEEccCCC
Q 023672          258 -------LYV-LHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       258 -------~~~-~~~-~~~~v~~~~~spdg~  278 (279)
                             ... +.. .......|+|+|+|+
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~  322 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGK  322 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCC
Confidence                   222 222 234568999999996

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.67  E-value=0.014  Score=46.73  Aligned_cols=177  Identities=10%  Similarity=-0.039  Sum_probs=103.9

Q ss_pred             CceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .....+++.+. ++++++-...+.|.+.+++.....                 .+.......       |..++++|.+.
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-----------------~l~~~~~~~-------P~~iavdp~~g  214 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-----------------TLFRENGSK-------PRAIVVDPVHG  214 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-----------------EEEECSSCC-------EEEEEEETTTT
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE-----------------EEEeCCCCC-------cceEEEecccC
Confidence            45678888874 444445556778888887643210                 011111112       33345566555


Q ss_pred             EEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecc
Q 023672          140 VFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       140 ~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .|+.+..  .+.|...++............-.     ....|++++++..|+..  ..+.|..+|+...  ....+... 
T Consensus       215 ~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~-----~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~-  286 (400)
T 3p5b_L          215 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-----WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILED-  286 (400)
T ss_dssp             EEEEEECSSSCCEEEEETTSCSCEEEECSSCS-----CEEEEEEETTTTEEEEEETTTTEEEEEETTSC--CCEEEEEC-
T ss_pred             eEEEEeCCCCCEEEEEeCCCCccEEEEECCCC-----ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC--ccEEEEeC-
Confidence            5555542  36788888864433222222111     66799999988777743  6788999998742  11222111 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                         .........+++.  ++.++++-...+.|..+|..+++.+..+......+.+++..
T Consensus       287 ---~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          287 ---EKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  340 (400)
T ss_dssp             ---SSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred             ---CCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence               1122335567763  55677777778889999988888777776544455666543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.013  Score=48.05  Aligned_cols=163  Identities=10%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             ceEEEEEcc-CCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeec--CCCceEEEEeeCcccccCCC
Q 023672           62 FLKGIKWSP-DGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT--EGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        62 ~v~~~~~~~-~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .-..|+|+| +...|+.+ ...+.|++.|+.++.....                ....  .......++|.-.-.-.+++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l----------------~~~~~~~~~~p~~ia~~~~~~~~d~~  203 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP----------------LNINTIPTNRIRSIAFNKKIEGYADE  203 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE----------------ECCTTSSCSBEEEEEECCCBTTTBCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE----------------EccCccccCCCcEEEEeecccccCCC
Confidence            356899998 34445444 4446788888886543211                0000  01123333331111111778


Q ss_pred             CcEEEEecCCC-------cEEEEECCC-Ceee-----EEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEcc
Q 023672          138 SCVFASTTRDH-------PIHLWDATT-GLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH  202 (279)
Q Consensus       138 ~~~l~s~~~d~-------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~  202 (279)
                      +..|+++...+       .|.+++... +...     ..+....      .+..++++|++..|+ +. .++.|..+|+.
T Consensus       204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~------~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK------QCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES------CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC------CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            88666665443       266665443 2321     2222111      456889999655554 55 78899999997


Q ss_pred             -------CCCC--c--------eeeeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEec
Q 023672          203 -------RPGR--D--------FEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYRE  252 (279)
Q Consensus       203 -------~~~~--~--------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~  252 (279)
                             ++..  +        ...+...     +.......++|+| ++. ++++-+..+.|+.++.
T Consensus       278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-----~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTI-----ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             HHHHHHHTTCCCCCBGGGCTTTEEEEEEC-----SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cccccccCceeecccccccccccceeEec-----CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEec
Confidence                   4221  0        1111111     2234567899999 777 4555566778888664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.66  E-value=0.011  Score=45.51  Aligned_cols=166  Identities=11%  Similarity=0.003  Sum_probs=96.9

Q ss_pred             CceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ....++++++.+..| ++-...+.|.+++++.....                 .+......       .|..++++|.+.
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-----------------~~~~~~~~-------~P~~iavdp~~g  132 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-----------------TLFRENGS-------KPRAIVVDPVHG  132 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-----------------EEEECTTC-------CEEEEEEETTTT
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE-----------------EEEECCCC-------CcceEEeCCCCC
Confidence            345788888755444 45456788999888643110                 01111111       233345576555


Q ss_pred             EEEEecCC--CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecc
Q 023672          140 VFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       140 ~l~s~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .|+.+...  +.|...++.. .....+....    ......+++++++..|+ +- ..+.|..+|+...  ....+... 
T Consensus       133 ~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~----~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~-  204 (316)
T 1ijq_A          133 FMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILED-  204 (316)
T ss_dssp             EEEEEECSSSCEEEEEETTS-CCEEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEEC-
T ss_pred             EEEEEccCCCCeEEEEcCCC-CCeEEEEECC----CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC--ceEEEeec-
Confidence            55544432  6788888753 3333332111    12567999999877777 43 6789999999742  12222111 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                         .........+++.  ++.++++-...+.|..+|..+++.+..+..
T Consensus       205 ---~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          205 ---EKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             ---TTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             ---CCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence               1112345677774  456777777788899999888876666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.028  Score=49.18  Aligned_cols=192  Identities=8%  Similarity=-0.001  Sum_probs=109.0

Q ss_pred             CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      ....|.++...++|. |-.|+.++-|..|+..+.....-.....    ...    ........|.++..       .+++
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~----~~~----~~~l~~~~v~~i~~-------d~~g  374 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT----QMN----ESSLSNKVVSSVCD-------DGQG  374 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC--------CCC----SSCCSSSCEEEEEE-------CTTS
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc----ccc----cCCCCCcceEEEEE-------cCCC
Confidence            346799999999886 5557766778888876543211000000    000    00012235666654       4555


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      . |..|+.++-|..||..++..... .... ......|.++...+++.+.++..++.+..+|..++  .+.   .+... 
T Consensus       375 ~-lWigt~~~Gl~~~~~~~~~~~~~-~~~~-~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~~---~~~~~-  445 (781)
T 3v9f_A          375 K-LWIGTDGGGINVFENGKRVAIYN-KENR-ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK--KFQ---IIELE-  445 (781)
T ss_dssp             C-EEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC--EEE---ECCST-
T ss_pred             C-EEEEeCCCcEEEEECCCCeEEEc-cCCC-CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC--cEE---EeccC-
Confidence            4 44566556688899876543221 1100 11112688999888888777666678888988762  111   11110 


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec-----CCCEEEEEEccCCC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-----EGGVTHVSKLSSAY  278 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~spdg~  278 (279)
                      ......|.++...+ ++.+.+. +. +-|..||..+++........     ...|.++...++|+
T Consensus       446 ~~~~~~v~~i~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~  507 (781)
T 3v9f_A          446 KNELLDVRVFYEDK-NKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR  507 (781)
T ss_dssp             TTCCCCEEEEEECT-TSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred             CCCCCeEEEEEECC-CCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence            12245688998888 6665554 44 45888998876543322212     35688888777764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.62  E-value=0.0093  Score=46.66  Aligned_cols=120  Identities=9%  Similarity=0.026  Sum_probs=64.4

Q ss_pred             CCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEec----C------------CeEEEEEccCCCCcee
Q 023672          147 DHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY----N------------KSVRVFDVHRPGRDFE  209 (279)
Q Consensus       147 d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d------------~~i~~~d~~~~~~~~~  209 (279)
                      +.+|.+|++... .....+..... ......+.+.+.++|.++++..    |            ..-++|.+.. +. ..
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~-~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-ND-VR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TC-CE
T ss_pred             CCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-Ce-EE
Confidence            457777776543 22222211111 1223678999999998776532    1            1233444333 11 11


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCC-CeE--EEEEeecCCCEEEEEEcc-CCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDN-MEL--LYVLHGQEGGVTHVSKLS-SAY  278 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~sp-dg~  278 (279)
                      .   +.    ..-...+.++|+| ++. ++++-+..+.|+.|++.. +..  ...+. ..+..-.+++.+ +|+
T Consensus       215 ~---~~----~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          215 V---VA----EGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD  279 (355)
T ss_dssp             E---EE----EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred             E---ee----cCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCc
Confidence            1   11    1123478999999 664 555556678899999863 332  22332 234566777777 464

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.61  E-value=0.011  Score=43.96  Aligned_cols=119  Identities=10%  Similarity=0.129  Sum_probs=76.7

Q ss_pred             CceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEE
Q 023672          120 ESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR  197 (279)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~  197 (279)
                      ..+..++|       +|++ .++++...++.|...|+. ++.+..+.....    .....|++.+++.++++. .++.+.
T Consensus        27 ~~lSGla~-------~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           27 NNISSLTW-------SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV----KDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             SCEEEEEE-------ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC----SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             cCcceeEE-------eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC----CChHHeEEeCCCEEEEEECCCCcEE
Confidence            35677777       4444 455567778899999997 888888765432    145688999998877776 788999


Q ss_pred             EEEccCCCCceeeeeecccc--cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          198 VFDVHRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      ++++...+. ..........  ..........++|+| .+..|+++.+.....||.+
T Consensus        95 ~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           95 VISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             EEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEE
T ss_pred             EEEcCCCCe-eeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEE
Confidence            999876442 2212222111  123345678999999 6655555665544455544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.59  E-value=0.0076  Score=50.73  Aligned_cols=52  Identities=13%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       147 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      ++.|..||+.+++.+.......      ++..-.....+.+++.+ .|+.++.||.+++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             cceEEEEECCCCCEEEEecCCC------CCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence            6789999999999888776543      22221122235566655 9999999999985

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.56  E-value=0.0099  Score=46.50  Aligned_cols=140  Identities=11%  Similarity=0.026  Sum_probs=78.7

Q ss_pred             ccCCCCcEEEEe------------cCCCcEEEEECCCCe-eeEEEeccC--ccccccceeeEEECC--CCC-EE-EEe--
Q 023672          133 ASDPTSCVFAST------------TRDHPIHLWDATTGL-LRCTYRAYD--AVDEITAAFSVAFNP--TGT-KI-FAG--  191 (279)
Q Consensus       133 ~~~~~~~~l~s~------------~~d~~i~i~d~~~~~-~~~~~~~~~--~~~~~~~v~~~~~~~--~~~-~l-~~~--  191 (279)
                      ++.|+|..++++            ..+|.|.++|+.+.. ....+....  ..........+.+.+  ++. +| ++.  
T Consensus        56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~  135 (355)
T 3sre_A           56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP  135 (355)
T ss_dssp             EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred             EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC
Confidence            345666555554            268999999997421 122232221  000112456777755  353 34 343  


Q ss_pred             -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe-----------------CCCcEEEEecC
Q 023672          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-----------------YSQTSAIYRED  253 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-----------------~dg~i~~wd~~  253 (279)
                       .+..|.+|++...+........+..   ..-...+.+++.+ +|.++++..                 ..|.|+-+|. 
T Consensus       136 ~~~s~ielf~~d~~~~~~~~~~~~~g---~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          136 GSSSTVEVFKFQEEEKSLLHLKTIRH---KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             TTCCEEEEEEEETTTTEEEEEEEECC---TTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             CCCCeEEEEEEECCCCEEEEEecccc---CCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence             3678999998875444444444422   1234678999999 888887754                 1244555554 


Q ss_pred             CCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          254 NMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       254 ~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                       ++...... .-...++++|||||++
T Consensus       211 -~~~~~~~~-~l~~pNGia~spDg~~  234 (355)
T 3sre_A          211 -NDVRVVAE-GFDFANGINISPDGKY  234 (355)
T ss_dssp             -TCCEEEEE-EESSEEEEEECTTSSE
T ss_pred             -CeEEEeec-CCcccCcceECCCCCE
Confidence             33322223 2345799999999963

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.52  E-value=0.025  Score=48.39  Aligned_cols=114  Identities=14%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             EEEEcc-CCCeEEEeeCCC-----------eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           65 GIKWSP-DGSSFLTSSEDK-----------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        65 ~~~~~~-~~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .+++.+ +++.++.|+.+.           .+.+||..++......              ............       .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------------~~~~~~~~~~~~-------~  248 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------------VTVTKHDMFCPG-------I  248 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------------EEECSCCCSSCE-------E
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--------------ccCCCCCCcccc-------c
Confidence            556677 888888877543           5788988866432110              000001111111       1


Q ss_pred             ccCCCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cC-----CeEEEEEccC
Q 023672          133 ASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YN-----KSVRVFDVHR  203 (279)
Q Consensus       133 ~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d-----~~i~~~d~~~  203 (279)
                      ++..++.+++.|+. +..+.+||..+.+....-..+..    +.-.+++..+++++++.|  .+     ..+.+||..+
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~----R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC----CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc----ccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            33568888888874 45899999987754432222211    122356667788887754  33     5689999976

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.50  E-value=0.012  Score=47.83  Aligned_cols=111  Identities=13%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc---ccccceeeEEECCC---CCEEEEe--c----------
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPT---GTKIFAG--Y----------  192 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~--~----------  192 (279)
                      .+++.|+|+++++-...+.|.+++..+++...........   ........|+|+|+   +..|+.+  .          
T Consensus        31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~  110 (454)
T 1cru_A           31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL  110 (454)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS
T ss_pred             EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccc
Confidence            3456889987776554457888887655543222221110   11235678999996   5555532  2          


Q ss_pred             --CCeEEEEEccCCCCceeeeeeccccc-CCCCCceEEEEEccCCCcEEEEEe
Q 023672          193 --NKSVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       193 --d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                        ...|.-|++......+.....+.... .........++|.| +|.++++.+
T Consensus       111 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          111 PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             ccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence              23566666543221111111111100 11123478999999 777777654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.43  E-value=0.0042  Score=48.75  Aligned_cols=107  Identities=16%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC---CCEEEEe--cC-----CeEEE
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---GTKIFAG--YN-----KSVRV  198 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~--~d-----~~i~~  198 (279)
                      |..+++.|+|+++++ ..++.|.+++  +++...................|+|+|+   +..|+++  ..     +.|..
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            344566889985554 5569999998  4443221111110111226789999998   5555533  22     67888


Q ss_pred             EEccCCCCc--eeee-eeccc-ccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          199 FDVHRPGRD--FEKY-STLKG-NKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       199 ~d~~~~~~~--~~~~-~~~~~-~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      |+... +..  .+.+ ..+.. ....|  ....++|.| ++.++++.+
T Consensus       110 ~~~~~-~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          110 LRHLG-ERGVLDRVVLDGIPARPHGLH--SGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEECS-SCEEEEEEEEEEECCCTTCCC--CCCCEEECT-TSCEEEECC
T ss_pred             EEeCC-CCcCceEEEEEeCCCCCCCCc--CCceEEECC-CCCEEEEEC
Confidence            88764 211  1111 11211 01123  246899999 787766643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.39  E-value=0.0073  Score=47.43  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             cccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCC---CCEEEEe-c----C----CeE
Q 023672          130 HMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPT---GTKIFAG-Y----N----KSV  196 (279)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~-~----d----~~i  196 (279)
                      ..+++.|++++++ +..++.|.+++ .+++ .+..+..  ..........|+|+|+   +..|+++ .    +    ..|
T Consensus        32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v--~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDV--ANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             EEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCC--CCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             eEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccce--eecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3445577887555 45569999887 4454 1221110  0011125779999998   4455433 2    2    567


Q ss_pred             EEEEccCCCCcee---ee-eecccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          197 RVFDVHRPGRDFE---KY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       197 ~~~d~~~~~~~~~---~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      ..|+.........   .+ ..+. ....|  ....++|.| ++.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~-~~~~h--~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIP-GAYIH--NGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEE-CCSSC--CCCCEEECT-TSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCC-CCCCc--CCceEEECC-CCcEEEEEC
Confidence            7777764211111   11 1121 11223  346799999 787777644

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.39  E-value=0.029  Score=43.44  Aligned_cols=161  Identities=11%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ++...+..+++.+++.+++++...+..+-.|-. +..               +.. +.......+..+.+       .++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t---------------W~~-~~~~~~~~~~~~~~-------~~~  215 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA---------------WEP-HNRTTSRRLHNMGF-------TPD  215 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS---------------CEE-EECCSSSCEEEEEE-------CTT
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc---------------eeE-CCCCCCCccceeEE-------CCC
Confidence            445678899999988877766544333333321 110               000 11112234555544       566


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccc
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      +..++ ++.+|.+.+.+...++.-..+.... ......+.++.+.+++.+++++.++.+ ++.... +.........   
T Consensus       216 g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~---  288 (327)
T 2xbg_A          216 GRLWM-IVNGGKIAFSDPDNSENWGELLSPL-RRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDV---  288 (327)
T ss_dssp             SCEEE-EETTTEEEEEETTEEEEECCCBCTT-SSCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGG---
T ss_pred             CCEEE-EeCCceEEEecCCCCCeeEeccCCc-ccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCcc---
Confidence            66554 4457777766433243222222110 001114778999988888888877776 333333 4444332211   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                       ......+.++.|.+ ++. +++++.+|.|.-++-
T Consensus       289 -~~~~~~~~~v~~~~-~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          289 -KKVPSNFYKILFFS-PDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             -TTSSSCCCEEEEEE-TTE-EEEECSTTEEEEECC
T ss_pred             -CCCCCCeEEEEEEC-CCc-eEEEcCCceEEEEcC
Confidence             12234578888876 555 455566887766653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.37  E-value=0.063  Score=46.92  Aligned_cols=175  Identities=10%  Similarity=-0.043  Sum_probs=100.1

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .....|++.+.+..|+ +-...+.|.+.++......                 .+.......       |..++++|.+.
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~-----------------~l~~~~l~~-------P~gIaVDp~~g  526 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-----------------TLFRENGSK-------PRAIVVDPVHG  526 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE-----------------EEEECTTCC-------EEEEEEETTTT
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE-----------------EEEeCCCCC-------cceEEEecCCC
Confidence            4566788888665444 5555788888888743210                 011111112       33445576655


Q ss_pred             EEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecc
Q 023672          140 VFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       140 ~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .|+.+..  .+.|...++........+...-     .....|++++.+..|+..  ..+.|..+++...  ....+... 
T Consensus       527 ~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l-----~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~~-  598 (791)
T 3m0c_C          527 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILED-  598 (791)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECSSC-----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEEC-
T ss_pred             CEEEecCCCCCeEEEEecCCCceEEEEeCCC-----CCceEEEEecCCCeEEEEeCCCCcEEEEecCCC--ceEEEecC-
Confidence            5555543  2678888886444333332221     267799999887777743  6678999998642  22221111 


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS  272 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  272 (279)
                         .+.-....+|++..  +.++++-...+.|...|..+++.+..+........+|+
T Consensus       599 ---~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~  650 (791)
T 3m0c_C          599 ---EKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  650 (791)
T ss_dssp             ---TTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEE
T ss_pred             ---CCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEe
Confidence               11122345666644  46666767778898899888876666654333334444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.34  E-value=0.034  Score=43.20  Aligned_cols=178  Identities=10%  Similarity=0.113  Sum_probs=98.6

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc---E-EEEecC
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC---V-FASTTR  146 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~-l~s~~~  146 (279)
                      ...+++.....+-+.+||+ .++....                   ...+.+..+...|.   |.-.++   + +++.-.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~-------------------~~~g~~nnVD~r~~---~~l~g~~~dla~as~R~   95 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHS-------------------YNTGKLNNVDIRYD---FPLNGKKVDIAAASNRS   95 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEE-------------------ECCSCEEEEEEEEE---EEETTEEEEEEEEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEE-------------------ccCCCcccEEEecc---cccCCceEeEEEEeCCC
Confidence            3456666677788999999 4443221                   11133444443331   111222   2 333333


Q ss_pred             --CCcEEEEEC--CCCeeeEEEecc--CccccccceeeEEE--CCC-CC-EEEEe-cCCeEEEEEccCCC---Cceeeee
Q 023672          147 --DHPIHLWDA--TTGLLRCTYRAY--DAVDEITAAFSVAF--NPT-GT-KIFAG-YNKSVRVFDVHRPG---RDFEKYS  212 (279)
Q Consensus       147 --d~~i~i~d~--~~~~~~~~~~~~--~~~~~~~~v~~~~~--~~~-~~-~l~~~-~d~~i~~~d~~~~~---~~~~~~~  212 (279)
                        +++|.+|++  .++. +..+...  .-......++.+++  +|. ++ ++++. .+|.+..|++...+   ...+...
T Consensus        96 ~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR  174 (355)
T 3amr_A           96 EGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR  174 (355)
T ss_dssp             TTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence              578999976  3443 4333211  00001126778888  775 44 45554 88999999995321   2233334


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC-----CCeEEEEEe-e-cCCCEEEEEE--ccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-----NMELLYVLH-G-QEGGVTHVSK--LSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~-----~~~~~~~~~-~-~~~~v~~~~~--spdg~  278 (279)
                      ++.     ..+.+-.|...+ ....|+.+-++.-|..++.+     +++.+..+. + ....+.+|++  .++|+
T Consensus       175 ~f~-----lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~  243 (355)
T 3amr_A          175 AFK-----MNSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK  243 (355)
T ss_dssp             EEE-----CSSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred             Eec-----CCCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence            432     234688899998 77788888888767777754     344554442 1 2236888887  45544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.33  E-value=0.033  Score=42.96  Aligned_cols=173  Identities=13%  Similarity=0.025  Sum_probs=97.8

Q ss_pred             ceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ...++++.+.+. ++++-...+.|.+++++.....                 .+.......-..       ++++|.+..
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-----------------~l~~~~~~~P~g-------iavdp~~g~  135 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-----------------VLFWQELDQPRA-------IALDPSSGF  135 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------EEECSSCSSEEE-------EEEEGGGTE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-----------------EEEeCCCCCccE-------EEEeCCCCE
Confidence            355788887444 4445555678888888643210                 011111122233       344655555


Q ss_pred             EEEec--CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeeccc
Q 023672          141 FASTT--RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       141 l~s~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      |+.+.  ..+.|...++.... ...+....    ......++++|++..|+ +- ..+.|..+|+...  ....+.    
T Consensus       136 ly~td~~~~~~I~r~~~dG~~-~~~~~~~~----l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~----  204 (318)
T 3sov_A          136 MYWTDWGEVPKIERAGMDGSS-RFIIINSE----IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT--NRQAVV----  204 (318)
T ss_dssp             EEEEECSSSCEEEEEETTSCS-CEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEE----
T ss_pred             EEEEecCCCCEEEEEEcCCCC-eEEEEECC----CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC--ceEEEe----
Confidence            55554  25678888876432 23322111    11567999999877776 43 6789999998742  112111    


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK  273 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  273 (279)
                        .+.......+++..  +.++.+-...+.|..+|..+++....+......+.+++.
T Consensus       205 --~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v  257 (318)
T 3sov_A          205 --KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA  257 (318)
T ss_dssp             --CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred             --cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence              11223456777754  466777777888999998888766666543333344443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.23  E-value=0.025  Score=44.07  Aligned_cols=144  Identities=15%  Similarity=0.089  Sum_probs=76.9

Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC-ccccccceeeEEECCC---CCEEEE---e-cCCeEEEEE
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAFNPT---GTKIFA---G-YNKSVRVFD  200 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~---~-~d~~i~~~d  200 (279)
                      |..+++.|+|.++++--..|.|++++..+++......... ..........|+|+|+   +..|+.   . .++.|.-|.
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~  113 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML  113 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence            3345668899877776658999999876665422211110 0111226789999996   344442   1 455666666


Q ss_pred             ccCCC----C--ceeee-eecccccCCCCCceEEEEEccCCCcEEEEEeC-------------CCcEEEEecCCC-----
Q 023672          201 VHRPG----R--DFEKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYREDNM-----  255 (279)
Q Consensus       201 ~~~~~----~--~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-------------dg~i~~wd~~~~-----  255 (279)
                      +....    .  ..+.+ ..+.. ...|  ....|.|.| ++.++++.+.             .|.|.-.+....     
T Consensus       114 ~~~~~~~~~~~~~~~~i~~~~p~-~~~H--~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          114 YDEKKPSGEQLGAPDTVFRGIPK-GVIH--NGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             BCTTSCTTCCBCCCEEEEEEECC-CSSC--CCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             eCCCCcccccCCCcEEEEEcCCC-CCCc--cCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            65411    1  11111 11211 1233  346799999 7877777542             244444444322     


Q ss_pred             ----eEEEEEeecCCCEEEEEEccCCC
Q 023672          256 ----ELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       256 ----~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                          ..+.. .+|. ....++|+|+|+
T Consensus       190 Pf~~~~i~a-~G~R-Np~Gla~dp~G~  214 (347)
T 3das_A          190 PFPGSPVYS-YGHR-NVQGLAWDDKQR  214 (347)
T ss_dssp             SSTTCCEEE-BCCS-BCCEEEECTTCC
T ss_pred             CCCCCeEEe-eCCC-CcceEEECCCCC
Confidence                11211 2343 356899999875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.19  E-value=0.049  Score=42.13  Aligned_cols=131  Identities=10%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeec
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      .+++.+++.+...+..+-.|- .+..-..+....    ...+..+.+.+++.+++++.+|.+++.+... +....   .+
T Consensus       171 ~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~----~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~---~~  241 (327)
T 2xbg_A          171 SPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTT----SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWG---EL  241 (327)
T ss_dssp             CTTSCEEEEETTSSEEEEECT-TCSSCEEEECCS----SSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEEC---CC
T ss_pred             cCCCcEEEEECCCcEEEEeCC-CCCceeECCCCC----CCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeE---ec
Confidence            667777776654443444442 122111121111    1267789999999888888888887764221 11111   11


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee---cCCCEEEEEEccCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHVSKLSSA  277 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~spdg  277 (279)
                      ..........+.++.+.+ ++.+++++. +|.| ++....++.-..+..   ....+.++.|.+++
T Consensus       242 ~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD  304 (327)
T ss_dssp             BCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred             cCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence            100001223588899998 777777655 6666 344443432222221   12345666665443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.17  E-value=0.0091  Score=46.86  Aligned_cols=146  Identities=11%  Similarity=0.055  Sum_probs=74.3

Q ss_pred             eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC--ccccccceeeEEECCC---CCEEE-Ee-c-------C
Q 023672          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPT---GTKIF-AG-Y-------N  193 (279)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~-~~-~-------d  193 (279)
                      .|..+++.|+++.|+.+...|.|++++.. +.....+....  ..........|+|+|+   +..|+ +- .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            34456678999834445567899999853 43221111100  0011125678999996   44444 32 2       2


Q ss_pred             CeEEEEEccCCCCceeeeeecccc-----cCCCCCceEEEEEccCCCcEEEEEeCC-------------CcEEEEecCCC
Q 023672          194 KSVRVFDVHRPGRDFEKYSTLKGN-----KEGQAGIMSAIAFSPTHTGMLAIGSYS-------------QTSAIYREDNM  255 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~~~~l~~~~~d-------------g~i~~wd~~~~  255 (279)
                      ..|..|++............+...     ...|  ....++|.| ++.++++.+..             |.|.-+|....
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            356667765422222211111111     1123  235799999 78766665432             45666665432


Q ss_pred             e------------EEEEEe-ecCCCEEEEEEcc-CCC
Q 023672          256 E------------LLYVLH-GQEGGVTHVSKLS-SAY  278 (279)
Q Consensus       256 ~------------~~~~~~-~~~~~v~~~~~sp-dg~  278 (279)
                      -            ....+. ++ .....++|.| +|+
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~  210 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA  210 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE
T ss_pred             CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC
Confidence            0            111222 23 2468899998 553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.15  E-value=0.058  Score=45.80  Aligned_cols=173  Identities=12%  Similarity=-0.021  Sum_probs=97.8

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .....+++++.+..|+ +-...+.|.+.+++.....                 .+.....       -.|..++++|.+.
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-----------------~l~~~~l-------~~P~~Iavdp~~g  139 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-----------------VLFWQEL-------DQPRAIALDPSSG  139 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------EEECSSC-------SCCCCEEEETTTT
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-----------------EEEeCCC-------CCCceEEEecCCC
Confidence            4678999998655444 5556789999998743210                 0110111       1355567777655


Q ss_pred             EEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecc
Q 023672          140 VFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       140 ~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .|+.+..  .+.|...++............-     .....|++++++..|+..  ..+.|..+|+...  ...   .+.
T Consensus       140 ~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~-----~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~--~~~---~~~  209 (619)
T 3s94_A          140 FMYWTDWGEVPKIERAGMDGSSRFIIINSEI-----YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT--NRQ---AVV  209 (619)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEEEECSSC-----SSEEEEEEETTTTEEEEEETTTCCEEEESSSCC--EEC------
T ss_pred             eEEEeccCCCCEEEEEECCCCceEEEEeCCC-----CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC--ccE---EEE
Confidence            5555543  3567767765433222222111     266899999987777743  6778999988742  111   111


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS  272 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  272 (279)
                         .+.......+++.. + .++++-...+.|...|..+++....+........+++
T Consensus       210 ---~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~  261 (619)
T 3s94_A          210 ---KGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH  261 (619)
T ss_dssp             ---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEE
T ss_pred             ---eCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEE
Confidence               11112234677766 4 6666666778899999888876555543322333443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.12  E-value=0.1  Score=44.40  Aligned_cols=176  Identities=9%  Similarity=0.002  Sum_probs=101.6

Q ss_pred             CceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ..+.+|+|++....|+ +-..++.|..++++.....                  .....+      ...|..+++++.+.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~------------------~v~~~g------~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE------------------HVVEFG------LDYPEGMAVDWLGK   92 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------------EEECSS------CSCCCEEEEETTTT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE------------------EEEeCC------CCCcceEEEEeCCC
Confidence            4578999999665555 5556788988888743210                  001001      01344445565544


Q ss_pred             EE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCceeeeeecc
Q 023672          140 VF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       140 ~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      .| ++-...+.|.+.++........+...-     .....|+++|....|+ +-  ..+.|...++...  ....+   .
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-----~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~--~~~~l---~  162 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDL-----DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS--ERTTL---V  162 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSC-----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEE---E
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCC-----CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC--ceEEE---E
Confidence            44 444556789999987543322221111     1567999999766666 43  3567888887642  22221   1


Q ss_pred             cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                          ..-.....++++++++.++++-...+.|...|+..... ..+...-....+|++..
T Consensus       163 ----~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          163 ----PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             ----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred             ----CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence                12345789999994555555656677899999865443 23333333455666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.05  E-value=0.011  Score=47.01  Aligned_cols=127  Identities=9%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc-ccccccCCCCcccceeeec-----CCCceEEEEeeCcccccC
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-NACSLAKDQDSYEASLVVT-----EGESVYDFCWFPHMSASD  135 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~  135 (279)
                      .|..+..+|+|++||..+ +..|.|-.+..+...... ..+..     -....+..+     ...+|..+.|+|.    +
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~-----~q~~ty~l~~~~~~~~s~I~qVlWHPl----~  136 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA-----FQIFHYSIDEEEVGPKSSIKKVLFHPK----S  136 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT-----TEEEEEEGGGCC--CCCCEEEEEECTT----B
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc-----cceeEEEcCCcccCCCCceeEEEeccc----c
Confidence            577899999999999876 458999998843221110 00000     000011111     2467999999997    4


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCe--eeEEEeccCc----cccccceeeEEECCCCCEEEE-e--cCCeEEEE
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDA----VDEITAAFSVAFNPTGTKIFA-G--YNKSVRVF  199 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~-~--~d~~i~~~  199 (279)
                      .++..|++-..|+.|++||+....  +. .+.....    ......|.+++|.+++-.|++ .  ..|.|+-.
T Consensus       137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          137 YRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             GGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            457789999999999999998632  22 3321110    011136889999998765553 2  56777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.83  E-value=0.077  Score=38.27  Aligned_cols=156  Identities=12%  Similarity=0.063  Sum_probs=77.2

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC-cccccCCCCc
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP-HMSASDPTSC  139 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~  139 (279)
                      ..+..++|+|+|.+.++  .+|.+.-.+..+....                  ........|-...|.- ..+.|.|+|.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~------------------~W~~s~t~IG~~Gw~~F~a~~fD~~G~  100 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND------------------NWMGRAKKIGNGGWNQFQFLFFDPNGY  100 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC------------------CHHHHCEEEECSCGGGCSEEEECTTSC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc------------------cccccccEecccccccceEEEECCCCC
Confidence            46789999999986666  6776555444321110                  0000011111101100 1134588998


Q ss_pred             EEEEecCCCcEEEEECCCCeeeE-----EEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCC-Cceeeeee
Q 023672          140 VFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPG-RDFEKYST  213 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~-~~~~~~~~  213 (279)
                      +.++  .||.|.-++..+.....     .......-   ..+..|.|.|+|.+.++. |+.++-...-+.. ...-...+
T Consensus       101 LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~  174 (236)
T 1tl2_A          101 LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARAT  174 (236)
T ss_dssp             EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCE
T ss_pred             EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccc
Confidence            7777  46888777753321110     11111000   156899999999999887 8885432221100 00000001


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcE
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i  247 (279)
                      ...  ...-....-+.|.| ++.+.+..  ++.+
T Consensus       175 ~~g--~~g~~~yr~l~f~~-~G~l~~v~--~g~~  203 (236)
T 1tl2_A          175 KIG--QGGWDTFKFLFFSS-VGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEE--SSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred             eec--cCCcceEEEEEECC-CCcEEEEe--CCeE
Confidence            100  12222344567888 77766665  6644

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.80  E-value=0.2  Score=42.58  Aligned_cols=161  Identities=7%  Similarity=-0.004  Sum_probs=91.7

Q ss_pred             CCceEEEEEccCCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      -....+|+|++.+..|+.+ ...+.|..++++......                .+....-.       .|..+++++.+
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~----------------~v~~~~~~-------~P~GlAvD~~~   95 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ----------------NVVVSGLL-------SPDGLACDWLG   95 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE----------------EEECSSCS-------CEEEEEEETTT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE----------------EEEeCCCC-------CcCeEEEEecC
Confidence            3457899999866666544 446788888886431000                01111101       23444556644


Q ss_pred             c-EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCceeeeeec
Q 023672          139 C-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       139 ~-~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      . ++++-...+.|.+.++........+...-.     ....|+++|.+..|+ +-  ..+.|...++..  .....+.  
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~-----~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG--~~~~~l~--  166 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELD-----QPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SSRFIII--  166 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCS-----CCCCEEEETTTTEEEEEECSSSCEEEEEETTS--CSCEEEE--
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCC-----CCceEEEecCCCeEEEeccCCCCEEEEEECCC--CceEEEE--
Confidence            4 444555678899999875433222222211     567899999866665 43  346777777763  2222211  


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                          ...-.....++++++++.++++-...+.|...|+....
T Consensus       167 ----~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~  204 (619)
T 3s94_A          167 ----NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  204 (619)
T ss_dssp             ----CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred             ----eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence                11234578999999556666666667789999886543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.68  E-value=0.05  Score=42.61  Aligned_cols=99  Identities=15%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC---CCcEEEEEeCC-----Cc
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS-----QT  246 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~l~~~~~d-----g~  246 (279)
                      ....++|.|+|+++++-.++.|++++  . +. ...+..+. ...........++++|+   ++.++++-..+     +.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~-g~-~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--E-GR-LSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--T-TE-EEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--C-CC-ccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            55789999999977676779999998  3 22 12222221 11222346789999993   35555554433     56


Q ss_pred             EEEEecCCCe-----EE-EEEee---cCCCEEEEEEccCCC
Q 023672          247 SAIYREDNME-----LL-YVLHG---QEGGVTHVSKLSSAY  278 (279)
Q Consensus       247 i~~wd~~~~~-----~~-~~~~~---~~~~v~~~~~spdg~  278 (279)
                      |..|+...+.     .+ ..+..   .......|+|.|||.
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~  147 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM  147 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC
Confidence            8888876432     12 22331   112346899999985

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.51  E-value=0.12  Score=37.26  Aligned_cols=108  Identities=13%  Similarity=-0.015  Sum_probs=60.3

Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCee------eEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCC
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLL------RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~  206 (279)
                      +|+|++.+.++  .+|.+.-.+..+...      -..+- ...  - ....++.|.|+|.+.++ .||.|+-++--+.+.
T Consensus        47 af~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG-~~G--w-~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~  119 (236)
T 1tl2_A           47 FLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIG-NGG--W-NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDT  119 (236)
T ss_dssp             EECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEE-CSC--G-GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTT
T ss_pred             EECCCccEEEE--eCCeEEEECCCCCCcccccccccEec-ccc--c-ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCC
Confidence            55888876665  677776666544211      11111 100  0 13468999999988888 779888777533221


Q ss_pred             ceeeee-ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          207 DFEKYS-TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       207 ~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      ...... +...  ..--..+..|.+.| +|.+.+..  |+.++-+..
T Consensus       120 ~~Wl~~a~~vg--~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~  161 (236)
T 1tl2_A          120 DNWIARATEVG--SGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALP  161 (236)
T ss_dssp             CCHHHHSEEEE--CSSGGGEEEEEECT-TSCEEEEE--TTEEEEECC
T ss_pred             CceeccccEec--cCCCCceEEEEECC-CceEEEEe--CCcEEecCC
Confidence            110000 0000  11113578999999 88777666  777544433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.15  E-value=0.089  Score=41.24  Aligned_cols=99  Identities=12%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC---CCcEEEEEeC---C----
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSY---S----  244 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~l~~~~~---d----  244 (279)
                      ....|+|.|+|+++++-.++.|+++|. . +.  ..+..+. ...........++++|+   ++.++++-+.   +    
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~-G~--~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISP-S-GK--KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECS-S-CE--EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeC-C-Cc--eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            567899999998777767799999973 2 22  2222221 11122346789999994   3655555442   3    


Q ss_pred             CcEEEEecCCC-------eEE-EEEeec-CCCEEEEEEccCCC
Q 023672          245 QTSAIYREDNM-------ELL-YVLHGQ-EGGVTHVSKLSSAY  278 (279)
Q Consensus       245 g~i~~wd~~~~-------~~~-~~~~~~-~~~v~~~~~spdg~  278 (279)
                      +.|..|+....       +.+ ..+... ......|+|.|||+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~  147 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM  147 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc
Confidence            56777776543       111 223311 12346799999985

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.07  E-value=0.58  Score=39.84  Aligned_cols=167  Identities=13%  Similarity=0.021  Sum_probs=95.0

Q ss_pred             eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE-EEEecCCCcEEE
Q 023672           74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHL  152 (279)
Q Consensus        74 ~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~i  152 (279)
                      +|+.+ ....|+..++++.....                .+....-.....+.|       ++.+.. +.+-..++.|..
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~----------------~~~~~~~~~~~~l~~-------d~~~~~lywtD~~~~~I~r   63 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV----------------AIPLTGVKEASALDF-------DVTDNRIYWTDISLKTISR   63 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE----------------ECCCCSCSCEEEEEE-------ETTTTEEEEEETTTTEEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcce----------------EEEcCCCCceEEEEE-------ECCCCEEEEEECCCCeEEE
Confidence            44444 35678888887532110                011111234555655       444444 445556788988


Q ss_pred             EECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                      +++........+.....     .+..+++.+.+..|+ +- ..+.|.+.++... . ...+  +    ...-.....+++
T Consensus        64 ~~~~g~~~~~v~~~g~~-----~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~-~-~~~l--~----~~~l~~P~~iav  130 (628)
T 4a0p_A           64 AFMNGSALEHVVEFGLD-----YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ-H-RQVL--V----WKDLDSPRALAL  130 (628)
T ss_dssp             EETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETTST-T-CEEE--E----CSSCCCEEEEEE
T ss_pred             EECCCCCcEEEEeCCCC-----CcceEEEEeCCCEEEEEECCCCEEEEEecCCC-c-EEEE--E----eCCCCCcccEEE
Confidence            99876544333332211     456899988776666 44 6789999998752 1 1111  1    112235789999


Q ss_pred             ccCCCcEEEEE-eCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          231 SPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       231 sp~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .|.++.++++- +..+.|...++........+. .-....+|++.++++
T Consensus       131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~  178 (628)
T 4a0p_A          131 DPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKR  178 (628)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTT
T ss_pred             ccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccC
Confidence            99455555543 235678888876544332232 345678899988653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.48  E-value=0.67  Score=36.21  Aligned_cols=56  Identities=9%  Similarity=0.071  Sum_probs=37.5

Q ss_pred             CceEEEEEccC------CCcEEEEEeCCCcEEEEecCCCeEEEEEe---ecCCCEEEEEEccCCC
Q 023672          223 GIMSAIAFSPT------HTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       223 ~~v~~~~~sp~------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~spdg~  278 (279)
                      ..+..+.|...      ++.++++.-..+.|...++..++......   .....+.++++.|||.
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence            35677888641      36677777677788888887665443322   2234789999999985

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.24  E-value=0.36  Score=36.83  Aligned_cols=118  Identities=4%  Similarity=-0.015  Sum_probs=59.9

Q ss_pred             CCCCcEEEEecCC--------------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEE
Q 023672          135 DPTSCVFASTTRD--------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVR  197 (279)
Q Consensus       135 ~~~~~~l~s~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~  197 (279)
                      ++++.+|+.+...              ..|+..++..++... +...         .+..|+++++.|+ +.  .++.-.
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~---------~~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD---------PCIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS---------CEEEEEEETTEEEEEEESSSSCEE
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC---------CccEEEEeCCEEEEEeecCCCCce
Confidence            5567777666432              357777777664322 2211         1346788888888 43  244444


Q ss_pred             EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEE-EEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA-IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ||-+...+...+.+.       .+.  +  ..++| .+..|+ +......|..-++..+.....+.   +... ..++|+
T Consensus       131 Iy~~~~dGs~~~~lt-------~~~--~--~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~  194 (302)
T 3s25_A          131 LYRIRIDGEEKKKIK-------NHY--L--FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLD  194 (302)
T ss_dssp             EEEEETTSCCCEEEE-------SSC--C--CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEE
T ss_pred             EEEEECCCCCeEEEe-------CCC--c--eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeec
Confidence            444443333333221       111  1  34567 444555 44335678888876665433332   2222 335576


Q ss_pred             CC
Q 023672          277 AY  278 (279)
Q Consensus       277 g~  278 (279)
                      |+
T Consensus       195 g~  196 (302)
T 3s25_A          195 DT  196 (302)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.15  Score=39.52  Aligned_cols=116  Identities=9%  Similarity=0.038  Sum_probs=69.2

Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEE---ECCCCCEEEE--ecCCeEEEEEccCCCCceeeeee
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA---FNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~~--~~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      ..++.++.||.|.-+|..+|+.+..+.....    .++....   ...++..++.  ..||.+..++..++ ...... .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~----~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~-~   84 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF----QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPL-S   84 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS----CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEE-E
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc----CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeee-c
Confidence            3788899999999999999999999876510    0111111   0012334443  37899999998763 111111 1


Q ss_pred             cccccCCCCCceEE---EEE-----ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          214 LKGNKEGQAGIMSA---IAF-----SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       214 ~~~~~~~~~~~v~~---~~~-----sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      ....  ....++..   ...     +. .+..+++|+.+|.+.-.|+++|+.+..+..
T Consensus        85 ~~~l--v~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           85 IRQL--VSTSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHH--HTTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             cccc--eeccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1100  01112211   000     01 345788999999999999999999888763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.07  E-value=0.91  Score=35.37  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCC
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN   92 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~   92 (279)
                      ..-+.|+|.|||+++++--..|.|++++..++
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence            34689999999987766655899999986544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.03  E-value=0.39  Score=39.84  Aligned_cols=89  Identities=9%  Similarity=0.066  Sum_probs=58.7

Q ss_pred             ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCC-----CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcE
Q 023672          175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRP-----GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i  247 (279)
                      ....+..+|||++++ +| .+.++.++|++.-     ++.......+..... -.-.....+|.+ +|....+---|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence            566899999999998 56 8999999999841     000000001111111 233567889999 88666667789999


Q ss_pred             EEEecCCC----------eEEEEEeecC
Q 023672          248 AIYREDNM----------ELLYVLHGQE  265 (279)
Q Consensus       248 ~~wd~~~~----------~~~~~~~~~~  265 (279)
                      .-|++...          ..+..+..|-
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~Y  429 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHY  429 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred             EEEeccHHHHHhcCccCCeeeecccccc
Confidence            99999754          4566666554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.99  E-value=1.2  Score=36.24  Aligned_cols=102  Identities=8%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             ceeeEEECCCCCEEEEecC-CeEEEEEccCCCCceeeeeecccccC--CCCCceEEEEEccC---CCcEEEEEeC-----
Q 023672          175 AAFSVAFNPTGTKIFAGYN-KSVRVFDVHRPGRDFEKYSTLKGNKE--GQAGIMSAIAFSPT---HTGMLAIGSY-----  243 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~---~~~~l~~~~~-----  243 (279)
                      ..+.|+|.|+|+++++... +.|++++...+ . ...+..+.....  ........|+|+|+   ++.+.++-+.     
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESG-S-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTC-C-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCC-c-EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            5579999999998887755 47888876542 2 222222322111  12456789999994   4555555432     


Q ss_pred             -------CCcEEEEecCCC-------eEEE-EEee-cCCCEEEEEEccCCC
Q 023672          244 -------SQTSAIYREDNM-------ELLY-VLHG-QEGGVTHVSKLSSAY  278 (279)
Q Consensus       244 -------dg~i~~wd~~~~-------~~~~-~~~~-~~~~v~~~~~spdg~  278 (279)
                             ...|.-|+....       +.+. .+.. .......|+|.|||+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~  156 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK  156 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence                   234555554322       1121 2322 123578999999985

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.64  E-value=2.7  Score=38.68  Aligned_cols=175  Identities=15%  Similarity=0.205  Sum_probs=95.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEE---ccC-CCeEEEee----------CCCeEEEEeCCCCcccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW---SPD-GSSFLTSS----------EDKTLRIFSLPENGISYDVNA  100 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~-~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~  100 (279)
                      -+.+.|..+.+....+.    +. ....+.|++.   ..+ ..+|++|+          ..|.|.+|++..++.      
T Consensus       808 ~i~lidp~t~~~i~~~~----l~-~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL------  876 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQ----FL-QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL------  876 (1158)
T ss_dssp             EEEEEETTTCCEEEEEE----CC-TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE------
T ss_pred             EEEEEeCCCCeEEEEEe----CC-CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE------
Confidence            45566766655443221    11 2234555553   332 46888776          347889998863211      


Q ss_pred             ccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE-EEeccCccccccceeeE
Q 023672          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSV  179 (279)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~  179 (279)
                                .......-.+++++++-      +  +|.+++..  ..+|++|++...+.+. ......      .+..+
T Consensus       877 ----------~lv~~~~v~g~v~al~~------~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~------~i~~~  930 (1158)
T 3ei3_A          877 ----------QTVAEKEVKGAVYSMVE------F--NGKLLASI--NSTVRLYEWTTEKELRTECNHYN------NIMAL  930 (1158)
T ss_dssp             ----------EEEEEEEESSCEEEEEE------E--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECC------CSCEE
T ss_pred             ----------EEEEEEEcCCcCEEEee------e--CCEEEEEc--CCEEEEEECCCCceEEEEeeccc------cEEEE
Confidence                      11122223457777753      1  45444433  5789999998665433 111111      22333


Q ss_pred             EECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          180 AFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       180 ~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      .....++++++| .-..|.++..+.....+..+..     ......++++.+-. +. .++.+..+|.|.+....
T Consensus       931 ~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~-----D~~~~~vta~~~ld-~~-t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          931 YLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR-----DFNPNWMSAVEILD-DD-NFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE-----CCSCBCEEEEEEEE-TT-EEEEEETTSEEEEEEEC
T ss_pred             EEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe-----ecccccEEEEEEEc-cC-cEEEEcCCCcEEEEecC
Confidence            333456778877 5566666655543333333222     34456788888866 44 56678889999888654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.48  E-value=1.5  Score=35.26  Aligned_cols=175  Identities=14%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec
Q 023672           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT  145 (279)
Q Consensus        66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  145 (279)
                      .-.+|..+.+|.=. ..++.|+|+++......                  ..-.+.|.-..|-      +++  .|+..+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks------------------~~~~e~VvfWkWi------s~~--~l~lVT  123 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------------HTMTDDVTFWKWI------SLN--TVALVT  123 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEE------------------EECSSCCCEEEEE------ETT--EEEEEC
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcc------------------eecCCCceEEEec------CCC--eEEEEc
Confidence            34677777776544 67999999997643211                  1112356556662      333  344333


Q ss_pred             CCCcEEEEECCC-CeeeEEEeccCccccccceeeEEECCCCCEEE-Ee---c----CCeEEEEEccCCCC----------
Q 023672          146 RDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---Y----NKSVRVFDVHRPGR----------  206 (279)
Q Consensus       146 ~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~----d~~i~~~d~~~~~~----------  206 (279)
                       +..|.-|++.. ..+.+.+..+..... ..|..-..+++.++++ +|   .    .|.+.+|..+..-.          
T Consensus       124 -~taVyHWsi~~~s~P~kvFdR~~~L~~-~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F  201 (494)
T 1bpo_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAG-CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF  201 (494)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGTT-CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEE
T ss_pred             -CCeeEEecccCCCCchhheecchhccc-ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeee
Confidence             55788899864 356666665554432 3566666677777766 33   1    24566666654210          


Q ss_pred             ----------------------------------------ceee-eeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          207 ----------------------------------------DFEK-YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       207 ----------------------------------------~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                                                              ++.. ...+........+...++..|+ .-.++..-+.-|
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G  280 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYG  280 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTS
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCc
Confidence                                                    0000 0000000012234455777787 666788888899


Q ss_pred             cEEEEecCCCeEEEEEeecCCCEEE
Q 023672          246 TSAIYREDNMELLYVLHGQEGGVTH  270 (279)
Q Consensus       246 ~i~~wd~~~~~~~~~~~~~~~~v~~  270 (279)
                      .|++||+.++.+++.-+-...+|..
T Consensus       281 ~i~lyDleTgt~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          281 YIHLYDLETGTCIYMNRISGETIFV  305 (494)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             eEEEEecccceeeeeecccCCceEE
Confidence            9999999999988765544444433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.08  E-value=1.9  Score=34.76  Aligned_cols=144  Identities=8%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEccCCCeEEEee-------CCCeEEEEeCCCCccccccccccccCC
Q 023672           35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS-------EDKTLRIFSLPENGISYDVNACSLAKD  106 (279)
Q Consensus        35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~  106 (279)
                      .++.|++.. ..+...+.....+.  ...|..-..+++.++++..+       -.|.+.+|..+.+...           
T Consensus       126 aVyHWsi~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-----------  192 (494)
T 1bpo_A          126 AVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-----------  192 (494)
T ss_dssp             EEEEEESSSSCCCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-----------
T ss_pred             eeEEecccCCCCchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-----------
Confidence            567787753 33444444444443  35688888899999887432       2477889998865321           


Q ss_pred             CCcccceeeecCCCceEEEEeeCcccccCC-CCcEEEEecC---CCcEEEEECCCC--------eeeEEEeccCcccccc
Q 023672          107 QDSYEASLVVTEGESVYDFCWFPHMSASDP-TSCVFASTTR---DHPIHLWDATTG--------LLRCTYRAYDAVDEIT  174 (279)
Q Consensus       107 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~s~~~---d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~  174 (279)
                             ...+|......+..     .-++ ....++.+..   .+++++.++...        +....+..+.... ..
T Consensus       193 -------~ieGhaa~F~~~~~-----~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~-~D  259 (494)
T 1bpo_A          193 -------PIEGHAASFAQFKM-----EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ-ND  259 (494)
T ss_dssp             -------EECCSEEEEEEEEC-----TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST-TC
T ss_pred             -------hheeeeeeeEEEec-----CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc-cC
Confidence                   11111111111111     0001 1123333332   368888888543        1111111111111 11


Q ss_pred             ceeeEEECCCCCEEE-EecCCeEEEEEccCC
Q 023672          175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHRP  204 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~  204 (279)
                      ..-++..++....++ ...-|.+++||+.++
T Consensus       260 FPvamqvs~kygviyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             ceeEEEecccCCEEEEEecCceEEEEecccc
Confidence            445788898877777 569999999999995

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.99  E-value=1.5  Score=33.13  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=54.5

Q ss_pred             CCcEEEEecCC-------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-----CeEEEEEccC
Q 023672          137 TSCVFASTTRD-------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHR  203 (279)
Q Consensus       137 ~~~~l~s~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~~~d~~~  203 (279)
                      ++.+++.|+.+       ..+.+||+.+.+-...-......    .-.++... ++++++.| .+     ..+.+||+.+
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR----SGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc----ccccEEEE-CCEEEEECCCCCCcccceEEEEeCCC
Confidence            45566666532       35889999887644332221111    11122222 45555544 43     4688999986


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-----cEEEEecCCCe
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNME  256 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-----~i~~wd~~~~~  256 (279)
                      .  ....+..+...    ......+.  . ++.+++.|+.++     .+.+||+.+.+
T Consensus       230 ~--~W~~~~~~~~~----r~~~~~~~--~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          230 N--AWRQVADMNMC----RRNAGVCA--V-NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             T--EEEEECCCSSC----CBSCEEEE--E-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             C--CEeeCCCCCCc----cccCeEEE--E-CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            3  22222222111    11112222  2 567888887654     48999988765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.36  E-value=2  Score=32.51  Aligned_cols=106  Identities=11%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             CCcEEEEecCC------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ec---------CCeEEEEE
Q 023672          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY---------NKSVRVFD  200 (279)
Q Consensus       137 ~~~~l~s~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---------d~~i~~~d  200 (279)
                      ++.+++.|+.+      ..+.+||+.+.+-...-......    .-.+++.. ++++++. |.         -..+.+||
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd  175 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----CSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYD  175 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----ceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeC
Confidence            45566777654      45889999887644332222111    11122222 4555553 32         34588999


Q ss_pred             ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (279)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~  256 (279)
                      +.+.  ....+..+...    ......+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       176 ~~~~--~W~~~~~~p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          176 PATE--TWTELCPMIEA----RKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             TTTT--EEEEECCCSSC----CBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCC--eEEECCCccch----hhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            9873  22222222111    111122222   55677777654     358889987653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.74  E-value=2.4  Score=31.89  Aligned_cols=106  Identities=12%  Similarity=0.215  Sum_probs=55.0

Q ss_pred             CCcEEEEecCC-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC-----CeEEEEEccCCC
Q 023672          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN-----KSVRVFDVHRPG  205 (279)
Q Consensus       137 ~~~~l~s~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d-----~~i~~~d~~~~~  205 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...-......    .-.++... ++++++. |.+     ..+.+||+.+. 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~-  185 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR----EGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTG-  185 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC----BSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc----ccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCC-
Confidence            45566666543     35889999887644332222211    11122222 4555554 343     56889998863 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~  256 (279)
                       .......+...    ......+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       186 -~W~~~~~~p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          186 -HWTNVTPMATK----RSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             -EEEEECCCSSC----CBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -cEEeCCCCCcc----cccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence             22222222111    111222222   56788888764     358899987764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.72  E-value=4.6  Score=35.12  Aligned_cols=182  Identities=6%  Similarity=0.010  Sum_probs=94.0

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...|.++....++ .|..|+.+| +..||..+......    .             ......|..+..        .++ 
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~----~-------------~~~~~~i~~i~~--------~~g-  113 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQP----E-------------TDFPTDVRTMAL--------QGD-  113 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCC----S-------------CCCCSCEEEEEE--------ETT-
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECc----c-------------cCCCceEEEEEe--------cCC-
Confidence            3568888877776 455666666 77899876533210    0             000123443321        134 


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccC
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      .|..++.+ -|..+|..+++.. .+...........|.++...+++.+.++.. +.+..+|..+.  .+... .......
T Consensus       114 ~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~--~~~~~-~~~~~~~  187 (758)
T 3ott_A          114 TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNG--KFEGI-PLPVHSS  187 (758)
T ss_dssp             EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTT--EEEEE-CCCCCTT
T ss_pred             cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCC--ceEEe-cCCCccc
Confidence            34445555 5778898766543 221110000112578888888888777544 45777887652  11111 1110000


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      .....|.++...+ ++..|..|+. +-+..+|..+++...........|.++...++|
T Consensus       188 ~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  243 (758)
T 3ott_A          188 QSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG  243 (758)
T ss_dssp             CSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC
T ss_pred             cccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC
Confidence            1123478888877 5554444544 347888887765322111112346666655554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.42  E-value=6.6  Score=36.18  Aligned_cols=116  Identities=13%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             ccCCCCcEEEEecCC---------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672          133 ASDPTSCVFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~  203 (279)
                      .|..+...|+++...         ..|++.+...+..+..+.....    ..|...+.+.  ..++.+.++.+.++.+..
T Consensus       468 gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~----~~I~~As~n~--~~vvva~g~~l~~fel~~  541 (1158)
T 3ei3_A          468 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQA----KNISVASCNS--SQVVVAVGRALYYLQIHP  541 (1158)
T ss_dssp             TCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTC----CCCCEEEECS--SEEEEEETTEEEEEEEET
T ss_pred             cccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCC----CEEEEEEeCC--CEEEEEECCEEEEEEeeC
Confidence            345555666666431         2466666655445555543321    1455555553  355533567888888875


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCC-----CcEEEEEeC-CCcEEEEecCCCeEEEEE
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSY-SQTSAIYREDNMELLYVL  261 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~~l~~~~~-dg~i~~wd~~~~~~~~~~  261 (279)
                      +  .+......     .-...|.|+++.|..     +.+++.|.. |++|+|+++.+.+.+...
T Consensus       542 ~--~L~~~~~~-----~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~  598 (1158)
T 3ei3_A          542 Q--ELRQISHT-----EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE  598 (1158)
T ss_dssp             T--EEEEEEEE-----ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             C--ceeeeccc-----CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE
Confidence            2  12222221     124579999998622     468999996 999999999887766443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.39  E-value=6  Score=37.24  Aligned_cols=36  Identities=11%  Similarity=0.137  Sum_probs=27.0

Q ss_pred             ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE
Q 023672          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV  260 (279)
Q Consensus       224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~  260 (279)
                      ...++..++ .-.++..-+.-|.|++||+.|+.++..
T Consensus       260 fpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          260 FPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             cceEEEecc-ccCEEEEEecCceEEEEecccchhhhh
Confidence            344666777 556777778889999999999876543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.98  E-value=2.9  Score=34.08  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=58.1

Q ss_pred             CcccccCCCCc-EEEEecCCCcEEEEECCCCe---eeEEEeccCcc----ccccceeeEEECCC----CCEEEE-e--cC
Q 023672          129 PHMSASDPTSC-VFASTTRDHPIHLWDATTGL---LRCTYRAYDAV----DEITAAFSVAFNPT----GTKIFA-G--YN  193 (279)
Q Consensus       129 ~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~l~~-~--~d  193 (279)
                      |..+++.|++. .|+++...|.|++++.....   .+..+...-..    ........|+|+|+    +.+.++ +  .+
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            44456788885 45556678999999754321   12222110000    01235678999997    333332 2  12


Q ss_pred             ----------CeEEEEEccCC--C----CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC
Q 023672          194 ----------KSVRVFDVHRP--G----RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (279)
Q Consensus       194 ----------~~i~~~d~~~~--~----~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d  244 (279)
                                ..|.-|.+...  .    ...+.+..+......|  ....|+|.| ++.++++.+..
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgp-DG~LYv~~Gd~  159 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGP-DGFLYIILGDG  159 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECT-TSCEEEEECCT
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECC-CCcEEEEeCCC
Confidence                      14444666431  1    0122222332222344  367899999 78777766543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.96  E-value=4.3  Score=33.04  Aligned_cols=103  Identities=9%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             ceeeEEECCCCC--EEEEecCCeEEEEEccCCCCceeeeeecccccC-----CCCCceEEEEEccC---CCcEEEEEeCC
Q 023672          175 AAFSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT---HTGMLAIGSYS  244 (279)
Q Consensus       175 ~v~~~~~~~~~~--~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~---~~~~l~~~~~d  244 (279)
                      ..+.|+|.|++.  ++++-..|.|++++... ......+..+.....     ........|+|+|+   ++.+.++-+.+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g-~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEG-EIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTS-CBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCC-CeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            557899999985  66666889999997542 111111111211111     12456789999993   25555543321


Q ss_pred             ------------CcEEEEecCC----------CeEEEEEe--ecCCCEEEEEEccCCC
Q 023672          245 ------------QTSAIYREDN----------MELLYVLH--GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       245 ------------g~i~~wd~~~----------~~~~~~~~--~~~~~v~~~~~spdg~  278 (279)
                                  ..|.-|.+..          .+.+..+.  .....-..|+|.|||+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~  151 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF  151 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc
Confidence                        1343355432          23344443  1223568899999995

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.74  E-value=3.4  Score=31.37  Aligned_cols=107  Identities=15%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             CCcEEEEecC-C-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCC-----eEEEEEccCC
Q 023672          137 TSCVFASTTR-D-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK-----SVRVFDVHRP  204 (279)
Q Consensus       137 ~~~~l~s~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~-----~i~~~d~~~~  204 (279)
                      ++.+++.|+. +     ..+.+||+.+.+-...-......    .-.++... ++++++ .|.++     .+.+||+.+.
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----SLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----hceEEEEE-CCEEEEEeccCCCCccceEEEEECCCC
Confidence            4556666665 2     36889999887543322111111    11122222 445555 44432     5888898763


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC--------------cEEEEecCCCeE
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--------------TSAIYREDNMEL  257 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg--------------~i~~wd~~~~~~  257 (279)
                        ....+......    ......+.+   ++.+++.|+.++              .+.+||+.+.+-
T Consensus       223 --~W~~~~~~p~~----r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          223 --KWAPFEAFPQE----RSSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             --EEEEECCCSSC----CBSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             --eEEECCCCCCc----ccceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence              22222222111    111222222   557777777542              377889877653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.73  E-value=4.8  Score=36.19  Aligned_cols=69  Identities=13%  Similarity=0.054  Sum_probs=41.7

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEEEE--e--cCCeEEEEEccC
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFA--G--YNKSVRVFDVHR  203 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~--~--~d~~i~~~d~~~  203 (279)
                      .++..++++-+.|+++|+|++.+++++.+...................|. +.++.+  .  .+|..++|.+..
T Consensus       244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~~  317 (950)
T 4gq2_M          244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLNA  317 (950)
T ss_dssp             ETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEEE
T ss_pred             cCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEec
Confidence            45667899999999999999999999888654332211111122233332 233321  2  456777776643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.47  E-value=3.6  Score=31.13  Aligned_cols=106  Identities=10%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             CCcEEEEecCC-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC-----CeEEEEEccCCC
Q 023672          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN-----KSVRVFDVHRPG  205 (279)
Q Consensus       137 ~~~~l~s~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d-----~~i~~~d~~~~~  205 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...-.......   .. +++.. ++++++. |.+     ..+.+||+.+. 
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-  194 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI---GV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN-  194 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB---SC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc---ce-EEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCC-
Confidence            45566666543     358889998775433222111110   11 22222 4555554 333     46889998763 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~  256 (279)
                       .......+...    ......+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       195 -~W~~~~~~p~~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          195 -EWRMITAMNTI----RSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             -EEEECCCCSSC----CBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -eEeeCCCCCCc----cccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence             22222222111    111222232   56788888765     458899987654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.39  E-value=3.7  Score=31.07  Aligned_cols=107  Identities=15%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             CCcEEEEecCC-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-----CeEEEEEccCCC
Q 023672          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPG  205 (279)
Q Consensus       137 ~~~~l~s~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~~~d~~~~~  205 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...-......    .-.++... ++++++.| .+     ..+.+||+.+. 
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-  241 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR----SGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE-  241 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT-
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc----ccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC-
Confidence            45566666544     45889999877543321111110    11122222 45555544 43     56899999863 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-----cEEEEecCCCeE
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNMEL  257 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-----~i~~wd~~~~~~  257 (279)
                       ....+..+.    ........+.  - ++.+++.|+.++     .+.+||+.+.+-
T Consensus       242 -~W~~~~~~p----~~r~~~~~~~--~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          242 -TWTFVAPMK----HRRSALGITV--H-QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             -EEEECCCCS----SCCBSCEEEE--E-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             -cEEECCCCC----CCccceEEEE--E-CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence             222222221    1111122222  2 567888887543     478899877653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.82  E-value=4.1  Score=30.60  Aligned_cols=106  Identities=13%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             CCcEEEEecCC-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-----CeEEEEEccCCC
Q 023672          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPG  205 (279)
Q Consensus       137 ~~~~l~s~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~~~d~~~~~  205 (279)
                      ++.+++.|+.+     ..+.+||+.+.+-...-......    .-.++... ++++++.| .+     ..+.+||+.+. 
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~-  232 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR----SGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTD-  232 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT-
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc----ccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCC-
Confidence            45566666654     45889999887654332221111    11122222 44555544 43     56899999863 


Q ss_pred             CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (279)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~  256 (279)
                       ....+..+...    ......+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       233 -~W~~~~~~p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          233 -SWTTVTSMTTP----RCYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             -EEEEECCCSSC----CBSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             -cEEECCCCCCc----ccceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             22222222111    111222222   56788888765     357899987654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.39  E-value=0.97  Score=35.06  Aligned_cols=110  Identities=10%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe-cCCCcEE
Q 023672           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST-TRDHPIH  151 (279)
Q Consensus        73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~  151 (279)
                      ..++.++.||.|.-+|..+|+.........                ..++.... .|   +...++..++.. +.||.|.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~----------------~~p~~~~~-~~---~~~~~~~~~vv~p~~dG~l~   70 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN----------------FQPLIEIQ-EP---SRLETYETLIIEPFGDGNIY   70 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG----------------SCCSEECC-CS---CTTTSSEEEEECCSTTTEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc----------------cCCcEEec-CC---ccccCCcEEEEEECCCCEEE
Confidence            367889999999999998886644322110                00111110 00   001133344443 6899999


Q ss_pred             EEECCCCeeeEEEeccCccccccceee---EEE------CCCCCEEEE-ecCCeEEEEEccCC
Q 023672          152 LWDATTGLLRCTYRAYDAVDEITAAFS---VAF------NPTGTKIFA-GYNKSVRVFDVHRP  204 (279)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~---~~~------~~~~~~l~~-~~d~~i~~~d~~~~  204 (279)
                      .++..+|.....+....... ..++..   ..+      +.+ ..+++ +.++.+...|++++
T Consensus        71 a~~~~~G~~~~~~~~~~lv~-~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG  131 (339)
T 2be1_A           71 YFNAHQGLQKLPLSIRQLVS-TSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNG  131 (339)
T ss_dssp             EEETTTEEEEEEEEHHHHHT-TCSEEEECC----------CC-EEEEECEEEEEEEEEETTTC
T ss_pred             EEECCCCcEEeeecccccee-ccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCC
Confidence            99999886665554432110 001110   001      123 34444 48888888888874

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.92  E-value=6.1  Score=31.19  Aligned_cols=197  Identities=10%  Similarity=0.077  Sum_probs=95.6

Q ss_pred             eeeEecCCCC--cccceeeeeeccCCCCCceEEEEEc---cC----CCeEE-EeeCCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPH--RTYHFYNQFRTSSIPNNFLKGIKWS---PD----GSSFL-TSSEDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~---~~----~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .+..||+.+.  +.++.+............+..+++.   |+    +.+.. +=+..+-|.|+|+.+++.-...... +.
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-FK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG-GS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC-Cc
Confidence            4678999998  8877665433333345678999988   22    22333 3334678999999988654332211 11


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCC----CcEEEEecCCCcEEEEECC-----CCeeeEEEeccCccccccc
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPT----SCVFASTTRDHPIHLWDAT-----TGLLRCTYRAYDAVDEITA  175 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~l~s~~~d~~i~i~d~~-----~~~~~~~~~~~~~~~~~~~  175 (279)
                      +. ..   ....-.+..+ .+.-....++++|+    ++.|+.....+. ++|-+.     +......++..+..+....
T Consensus       203 pd-~~---~~~~i~G~~~-~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~  276 (381)
T 3q6k_A          203 AE-RP---TKFDYGGKEY-EFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYND  276 (381)
T ss_dssp             CC-SC---EEEEETTEEE-EECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCC
T ss_pred             cc-cC---cceEECCEEe-EeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCC
Confidence            10 00   0111111111 11111122345665    666666654442 233332     2111111111111111112


Q ss_pred             eeeEEEC-CCCCEEEEe-cCCeEEEEEccC-CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672          176 AFSVAFN-PTGTKIFAG-YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       176 v~~~~~~-~~~~~l~~~-~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      ...+++. .+|.++++- ....|..|+..+ +-.+ .....+..  ...-..+..+.+.+ ++.+.+..+
T Consensus       277 ~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~-~n~~~l~~--d~~l~~pd~~~i~~-~g~Lwv~sn  342 (381)
T 3q6k_A          277 AIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRM-KNTDVVYT--SSRFVFGTDISVDS-KGGLWFMSN  342 (381)
T ss_dssp             EEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCG-GGEEEEEE--CTTCCSEEEEEECT-TSCEEEEEC
T ss_pred             cceEEEeCCCCeEEEEeccCCeEEEEeCCCCcccc-CceEEEEE--CCCccccCeEEECC-CCeEEEEEC
Confidence            3356776 567666665 889999999875 2110 11111111  11233577788877 666666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.71  E-value=0.88  Score=37.83  Aligned_cols=74  Identities=11%  Similarity=0.064  Sum_probs=49.9

Q ss_pred             eCcccccCCCCcEEEEec-CCCcEEEEECCCC------ee---eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeE
Q 023672          128 FPHMSASDPTSCVFASTT-RDHPIHLWDATTG------LL---RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV  196 (279)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~------~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i  196 (279)
                      +|+.+.++|||++++.++ .+.++.++|++.-      +.   ...+.....  ........+|.++|....+- -|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceE
Confidence            677888999999987765 4778999999742      11   001111111  11256789999999433355 89999


Q ss_pred             EEEEccC
Q 023672          197 RVFDVHR  203 (279)
Q Consensus       197 ~~~d~~~  203 (279)
                      ..|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999975

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.68  E-value=5.3  Score=30.09  Aligned_cols=113  Identities=10%  Similarity=0.141  Sum_probs=57.7

Q ss_pred             CCcEEEEecC---------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC-----CeEEEEEc
Q 023672          137 TSCVFASTTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN-----KSVRVFDV  201 (279)
Q Consensus       137 ~~~~l~s~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d-----~~i~~~d~  201 (279)
                      ++.+++.|+.         -..+.+||+.+.+-...-......    .-.++... ++++++. |.+     ..+.+||+
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR----KNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEECCEETTEEBCCEEEEET
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh----hcceEEEE-CCEEEEEeCCCCCCCCceEEEeeC
Confidence            4555666643         345889999887644332222111    11122222 4555554 332     46889999


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe--EEEEEee
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME--LLYVLHG  263 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~--~~~~~~~  263 (279)
                      .+.  ....+..+.    .......++.+   ++.+++.|+.+     ..+.+||+.+.+  .+..+..
T Consensus       224 ~~~--~W~~~~~~p----~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~  283 (306)
T 3ii7_A          224 KLN--EWKMVSPMP----WKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRA  283 (306)
T ss_dssp             TTT--EEEECCCCS----CCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEEC
T ss_pred             CCC--cEEECCCCC----CCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccc
Confidence            863  222222221    11112223333   56788888754     458899998754  4444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.97  E-value=14  Score=34.05  Aligned_cols=38  Identities=8%  Similarity=0.091  Sum_probs=32.0

Q ss_pred             ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .+.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            455666777 77899999999999999999999988765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.79  E-value=6.1  Score=29.66  Aligned_cols=106  Identities=10%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             CCcEEEEecCCC-----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ec-------CCeEEEEEccC
Q 023672          137 TSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-------NKSVRVFDVHR  203 (279)
Q Consensus       137 ~~~~l~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-------d~~i~~~d~~~  203 (279)
                      ++.+++.|+.++     .+.+||+.+.+-...-......    .-.+++.. ++++++. |.       -..+.+||+.+
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~  182 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR----SSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATT  182 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc----cCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence            455666666543     4778998877644332222111    11122222 4455553 33       24588999886


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-----cEEEEecCCCe
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNME  256 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-----~i~~wd~~~~~  256 (279)
                      .  .......+......    ...+.+   ++.+++.|+.++     .+.+||+.+.+
T Consensus       183 ~--~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          183 N--EWTYIAEMSTRRSG----AGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             T--EEEEECCCSSCCBS----CEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             C--cEEECCCCcccccc----ccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            3  22222222111111    122222   567888887653     58899987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.77  E-value=6.4  Score=29.86  Aligned_cols=108  Identities=16%  Similarity=0.314  Sum_probs=54.4

Q ss_pred             CCcEEEEecC------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec-C----CeEEEEEccCC
Q 023672          137 TSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-N----KSVRVFDVHRP  204 (279)
Q Consensus       137 ~~~~l~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d----~~i~~~d~~~~  204 (279)
                      ++.+++.|+.      -..+.+||+.+.+-...-......    .-.+++.. ++++++ .|. +    ..+.+||+.+.
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----SMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----ccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCC
Confidence            5556666653      235889999887644332221111    11122222 445555 443 2    35778898763


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC--------------CcEEEEecCCCeEE
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------------QTSAIYREDNMELL  258 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d--------------g~i~~wd~~~~~~~  258 (279)
                        ....+..+...    .... +++. - ++.+++.|+.+              ..+.+||+.+.+-.
T Consensus       233 --~W~~~~~~p~~----r~~~-~~~~-~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          233 --KWEVMTEFPQE----RSSI-SLVS-L-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             --CEEECCCCSSC----CBSC-EEEE-E-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             --eEEECCCCCCc----ccce-EEEE-E-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence              22222222111    1111 2222 2 56788887754              35888998876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=87.99  E-value=12  Score=32.22  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             CCcEEEEecCC------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCC--eEEEEEccCCCCc
Q 023672          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK--SVRVFDVHRPGRD  207 (279)
Q Consensus       137 ~~~~l~s~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~--~i~~~d~~~~~~~  207 (279)
                      ++.+++.|+.+      ..+.+||+.+.+-...-.....    ..-.+++.-.++++++. |.++  .+.+||..+.  .
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--I  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--E
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--c
Confidence            56666776643      3578899988654332111111    11123333336666664 4332  7899999873  2


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC--C-----CcEEEEecCCCe
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--S-----QTSAIYREDNME  256 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~--d-----g~i~~wd~~~~~  256 (279)
                      +...... ...........++.+...++.+++.|+.  +     ..+.+||+.+..
T Consensus       525 W~~~~~~-g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          525 FKDVTPK-DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCCS-SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             eEEccCC-CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            2222110 0001111222345666623778888876  2     348889987765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.89  E-value=7.3  Score=29.48  Aligned_cols=106  Identities=8%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             CCcEEEEecCC--------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-C-----CeEEEEEc
Q 023672          137 TSCVFASTTRD--------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-N-----KSVRVFDV  201 (279)
Q Consensus       137 ~~~~l~s~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d-----~~i~~~d~  201 (279)
                      ++.+++.|+.+        ..+.+||+.+.+-...-..+...    .-.+++. -++++++.| . +     ..+.+||+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~  172 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----YGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDP  172 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----cceeEEE-ECCEEEEEeCCCCCCcccceEEEEeC
Confidence            45566666632        35889999887543222211111    1112222 344555543 4 2     46899999


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-----cEEEEecCCCe
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNME  256 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-----~i~~wd~~~~~  256 (279)
                      .+.  .......+...    .....++.+   ++.+++.|+.++     .+.+||+.+.+
T Consensus       173 ~~~--~W~~~~~~p~~----r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          173 KKF--EWKELAPMQTA----RSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTT--EEEECCCCSSC----CBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCC--eEEECCCCCCc----hhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            863  22222222111    111122222   567788777654     48889987653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.32  E-value=16  Score=32.88  Aligned_cols=38  Identities=8%  Similarity=0.091  Sum_probs=32.7

Q ss_pred             ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      .+.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            567777777 77899999999999999999999887754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=87.26  E-value=2.2  Score=35.85  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=41.5

Q ss_pred             eCcccccCCCCcEEEEecCC------------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          128 FPHMSASDPTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      +|+.++|++.|.+++.-..+            ..+.+.+..+++....+..+..    ..++.++|+||++.|++
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----aE~TG~~fspDg~tlfv  547 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFV  547 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----ccCcCeeECCCCCEEEE
Confidence            46667889999876654432            2355667777877766665432    37899999999988874

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.99  E-value=2  Score=36.19  Aligned_cols=55  Identities=13%  Similarity=0.030  Sum_probs=39.4

Q ss_pred             ceEEEEEccCCCcEEEEEeCC------------CcEEEEecCCCeEEEEEeecC-CCEEEEEEccCCCC
Q 023672          224 IMSAIAFSPTHTGMLAIGSYS------------QTSAIYREDNMELLYVLHGQE-GGVTHVSKLSSAYT  279 (279)
Q Consensus       224 ~v~~~~~sp~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~-~~v~~~~~spdg~~  279 (279)
                      ..-.|+|+| .|.+++.-..+            ..+.+.+..+++....+.++. ..+++++|+|||++
T Consensus       477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~t  544 (592)
T 3zwu_A          477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKT  544 (592)
T ss_dssp             CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred             CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCE
Confidence            346789999 77766654322            236667777888777777654 57999999999974

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.05  E-value=6.4  Score=32.94  Aligned_cols=56  Identities=13%  Similarity=0.045  Sum_probs=39.3

Q ss_pred             CceEEEEEccCCCcEEEEEeC------------CCcEEEEecCCCeEEEEEeec-CCCEEEEEEccCCCC
Q 023672          223 GIMSAIAFSPTHTGMLAIGSY------------SQTSAIYREDNMELLYVLHGQ-EGGVTHVSKLSSAYT  279 (279)
Q Consensus       223 ~~v~~~~~sp~~~~~l~~~~~------------dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~spdg~~  279 (279)
                      .....|+|++ +|.+.++...            .+.|..++..++++...+... ...+++++|+||+++
T Consensus       476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~kt  544 (592)
T 4a9v_A          476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKT  544 (592)
T ss_dssp             CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred             CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCE
Confidence            3467899999 7777763321            125777777788876666544 346899999999974

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.29  E-value=6.2  Score=33.03  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=38.9

Q ss_pred             eCcccccCCCCcEEEEecC------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672          128 FPHMSASDPTSCVFASTTR------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (279)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (279)
                      +|+-+.|+++|.+.+....            ...+..++..+++....+.....    ..++.++|+||++.|++.
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~----aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC----ccccCCEECCCCCEEEEE
Confidence            3455667888877663321            12566677777876665543321    267899999999988843

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.13  E-value=26  Score=30.23  Aligned_cols=116  Identities=11%  Similarity=0.064  Sum_probs=59.1

Q ss_pred             CCcEEEEecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEEEEe-c--C-----CeEEEEEccCCC
Q 023672          137 TSCVFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-Y--N-----KSVRVFDVHRPG  205 (279)
Q Consensus       137 ~~~~l~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~--d-----~~i~~~d~~~~~  205 (279)
                      ++.+++.|+.++  .+.+||+.+.+-...-.............++.+..+ +++++.| .  +     ..+.+||+.+..
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            666777776554  689999988764332210000000112223555655 4555544 3  2     468899998743


Q ss_pred             C----ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC--------CcEEEEecCCCeE
Q 023672          206 R----DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMEL  257 (279)
Q Consensus       206 ~----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d--------g~i~~wd~~~~~~  257 (279)
                      .    .+..+....  ... .....++.+ . ++.+++.|+.+        ..|.+||+.+.+-
T Consensus       580 w~~~~~W~~~~~~p--~~~-R~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          580 ATEPITVIKKLQHP--LFQ-RYGSQIKYI-T-PRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             SSCCEEEEEEEECG--GGC-CBSCEEEEE-E-TTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             cccceEEEEcCCCC--CCC-cccceEEEe-C-CCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            1    022221110  011 111222233 2 36788888743        4589999987653

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.85  E-value=18  Score=31.23  Aligned_cols=65  Identities=12%  Similarity=0.104  Sum_probs=41.9

Q ss_pred             CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccc--------cceeeEEECCCCCEEE--Ee-cCCeEEEEEccC
Q 023672          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI--------TAAFSVAFNPTGTKIF--AG-YNKSVRVFDVHR  203 (279)
Q Consensus       137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~--~~-~d~~i~~~d~~~  203 (279)
                      +..++++-+.|+++|+|++.+++++............        .+-.-+...  +.+++  .. .+|..++|.+..
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~--~~~lv~y~P~~~G~Fk~~~l~~  305 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY--NNTLVTLLPLENGLFQMGTLLV  305 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEES--SSEEEEEETTTTCEEEEEEEEC
T ss_pred             CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhe--eeEEEEEecCCCCeEEEEEEEE
Confidence            4669999999999999999999988887763221000        000111111  24444  23 678999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + ++ DG S ++ S D+++++++L       D    +    + +Y     +   + V   
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-----IGHKDFVLSV 314

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT 184
                            S ++D  +  WD  +G      + + ++V  +  A   +  P 
Sbjct: 315 AT-------TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 185 GTKIF-AGYNKSVRVFDVHR 203
                    +   R++   +
Sbjct: 368 YNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVA 180
                   ++ S       A+ + D  + +WD+ TG L     + +        + +SV 
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261

Query: 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS----TLKGNKEGQAGIMSAIAFSPTHT 235
           F   G  + +G  ++SV+++++       +  +    T +    G    + ++A +    
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
             +  GS  +    + + +   L +L G    V  V
Sbjct: 322 -YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 18/114 (15%)

Query: 41  VPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA 100
               +T +      T     +F+  +  + +    L+ S+D+ +  +          +  
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348

Query: 101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
                               SV         S   P   VFA+ + D    +W 
Sbjct: 349 HR-----------------NSVISVAVANGSSLG-PEYNVFATGSGDCKARIWK 384

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 28/148 (18%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
           +T +   + +  I + P+G++F T S+D T R+F L  +      +              
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------------ 267

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
                   +    +         +  +  +   D   ++WDA           +D  + +
Sbjct: 268 ---NIICGITSVSF-------SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRV 315

Query: 174 TAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
           +    +     G  +    ++  +++++
Sbjct: 316 S---CLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 8/111 (7%), Positives = 23/111 (20%), Gaps = 24/111 (21%)

Query: 44  HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL 103
                      +       +  + +S  G   L   +D    ++   +   +  +     
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312

Query: 104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
                             V                   A+ + D  + +W+
Sbjct: 313 ----------------NRVSCLGV-------TDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 40/238 (16%), Positives = 72/238 (30%), Gaps = 35/238 (14%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDSYEASL--- 114
            + + P  S  +++SED T++++            G +  V   S         +     
Sbjct: 22  RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81

Query: 115 --------VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166
                         +++         +  P      S +RD  I +W+  TG    T+  
Sbjct: 82  TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141

Query: 167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV-----------HRPGRDFEKYSTL 214
           +           V  N  GT I +   +++VRV+ V           HR   +   ++  
Sbjct: 142 HREWV-----RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
                      S    S      L  GS  +T  ++       L  L G +  V  V 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 21/172 (12%), Positives = 49/172 (28%), Gaps = 44/172 (25%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-----CSLAKDQDSYEASLVVTEGESV 122
            + DG+   + S D+T+R++ +       ++         ++   +S  +S+    G   
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210

Query: 123 YDFCWFPHMSAS---------------------------------DPTSCVFASTTRDHP 149
                      S                                         S   D  
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 270

Query: 150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
           + +WD        T  A++         S+ F+ T   +     +++V+V++
Sbjct: 271 LRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 24/101 (23%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
            T    +N+++G+ +   G   L+ ++DKTLR++          +NA             
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE----------- 289

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
                   V    +         T+    + + D  + +W+
Sbjct: 290 ------HFVTSLDF-------HKTAPYVVTGSVDQTVKVWE 317

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 8/141 (5%)

Query: 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-- 190
           A          T   + +H+ D  +  +  +      + +     +    P     +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----MPDKFGPGTAMMAPDNRTAYVLN 58

Query: 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250
            +   +   D+         ++ L          M + A SP    + A  + +Q    +
Sbjct: 59  NHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 251 REDNMELLYVLHGQEGGVTHV 271
                  L V    +G     
Sbjct: 117 YVVKPPRLEVFSTADGLEAKP 137

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 7/80 (8%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
           +                 F ST +D+ ++ W    G      +   +V       S   +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV------LSCDIS 315

Query: 183 PTGTKIF-AGYNKSVRVFDV 201
                I     +K   V++V
Sbjct: 316 VDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 25/127 (19%)

Query: 28  NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIF 87
                   +          +          +  + +  +K++  G  F+++ +D  L  +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

Query: 88  SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147
             P                     +     E  SV                    + + D
Sbjct: 293 RTP------------------YGASIFQSKESSSVLSCDI-------SVDDKYIVTGSGD 327

Query: 148 HPIHLWD 154
               +++
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
           +V  +     ++ G    V+V+D+  P     K    + +   +   + +    P     
Sbjct: 56  AVTISNPTRHVYTGGKGCVKVWDISHP---GNKSPVSQLDCLNRDNYIRSCKLLPDGC-T 111

Query: 238 LAIGSY 243
           L +G  
Sbjct: 112 LIVGGE 117

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 22/155 (14%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE----SVY 123
              DG   ++ S D ++R++ +      + +            + +++V+        ++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242

Query: 124 DFCWFPH-------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV 170
           D                   ++          +++ D  + LWD  TG         ++ 
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 171 DEITAAFSVAFNPTGTKIFAGYN-----KSVRVFD 200
                 + +  + T      G         + V D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 19/213 (8%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDSYEASLVVTEGE 120
               G+  ++ S+D TL+++S           G +  V +  +  +     ++    +  
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAVDEITAAFSV 179
           +         +     T        +       DAT  +      +    +    AA   
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 180 AFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
                   +   Y+  V+V+D            T     +G    + ++ F   H   + 
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPE--------TETCLHTLQGHTNRVYSLQFDGIH---VV 191

Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
            GS   +  ++  +    ++ L G +   + + 
Sbjct: 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 19/199 (9%), Positives = 43/199 (21%), Gaps = 14/199 (7%)

Query: 36  LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK-TLRIFSLPENGI 94
           L       H                ++       PD  +     E    +          
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208

Query: 95  SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
               +  +      + +          V     F   +A +P           + +  +D
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFD 266

Query: 155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST 213
                         +       +SV  +  G+ ++  G    +  +D        EK   
Sbjct: 267 LEKNASIKRVPLPHSY------YSVNVSTDGSTVWLGGALGDLAAYDA----ETLEKKGQ 316

Query: 214 LKGNKEGQAGIMSAIAFSP 232
           +         + S   F+ 
Sbjct: 317 VDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/106 (9%), Positives = 29/106 (27%), Gaps = 4/106 (3%)

Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199
            +A+  +   +   D  TG            + + + F  A +P G  +    +      
Sbjct: 48  AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 200 DVHRPGRDFEKYSTLKGNKE----GQAGIMSAIAFSPTHTGMLAIG 241
                          +             ++ +A++   + +  +G
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 15/147 (10%), Positives = 33/147 (22%), Gaps = 5/147 (3%)

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
            H+S    +        RD  +++ D                +  +   S          
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 189 FAG--YNKSVRVFDVHRPG---RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
            AG  +     + D            +  T    +      ++AI  S      +     
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTH 270
           +    +    ++  L           H
Sbjct: 184 TGKILLVDYTDLNNLKTTEISAERFLH 210

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 13/199 (6%), Positives = 37/199 (18%), Gaps = 29/199 (14%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
             + S  G        D  + +  L                          +  G     
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDL----------------WMKEPTTVAEIKIGSEARS 109

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA------FS 178
                     D      A         + D  T   +          +           +
Sbjct: 110 IETSKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 167

Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
           +  +    +      ++ ++  V     +  K + +          +       +H   +
Sbjct: 168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-----ERFLHDGGLDGSHRYFI 222

Query: 239 AIGSYSQTSAIYREDNMEL 257
              +      +      +L
Sbjct: 223 TAANARNKLVVIDTKEGKL 241

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 16/196 (8%), Positives = 53/196 (27%), Gaps = 34/196 (17%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
           S   S  ++ S D  L+++           +         S            ++     
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-----------GLHHVDVL 69

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNP 183
             +       C+ A+T+    +  +  T       ++       D+  +  + +++ +  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 184 TGTK------IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK----------EGQAGIMSA 227
           +  +      +      +  ++  H    +    +                   +   ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 228 IAFSPTHTGMLAIGSY 243
           +  S    G++A G  
Sbjct: 190 VDISE--RGLIATGFN 203

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 27/213 (12%), Positives = 55/213 (25%), Gaps = 34/213 (15%)

Query: 42  PPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC 101
              R  + +    +    +N ++ +K+SP GS    + +  +    +L E      + + 
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 102 SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR 161
           S+                  V    +               S   D  +  WD  T    
Sbjct: 273 SVPTHSSQASLGEFAHSSW-VMSLSFNDSGE-------TLCSAGWDGKLRFWDVKTKERI 324

Query: 162 CTYRAY-DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220
            T   + D ++       +A +  G  +       V+                 KG + G
Sbjct: 325 TTLNMHCDDIE--IEEDILAVDEHGDSLAEPGVFDVKFLK--------------KGWRSG 368

Query: 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253
                            L      ++   +RE 
Sbjct: 369 MGA---------DLNESLCCVCLDRSIRWFREA 392

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 9e-05
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
            +       + S   S  FA+   D  I +WD TT      +              V   
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ-QVGVVAT 306

Query: 183 PTGTKIFAGYNKSVRVFDV 201
             G  I    + ++  +++
Sbjct: 307 GNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 4/97 (4%)

Query: 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
              ++++PT   I     KS  V  +              G+    + +++ + FSP   
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH---GSSVVTTVKFSPIKG 76

Query: 236 G-MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
              L  G  S    ++     +    +         V
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 113

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 170 VDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228
           V+ I+     A+N   T+I     N  V +++    G  + +   LK +     G ++ +
Sbjct: 7   VEPIS---CHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHN----GQVTGV 57

Query: 229 AFSPTHTGMLAIGSYSQTSAIYREDNM 255
            ++P     +      + + ++     
Sbjct: 58  DWAPDSN-RIVTCGTDRNAYVWTLKGR 83

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 16/170 (9%), Positives = 36/170 (21%), Gaps = 22/170 (12%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPEN---------GISYDVNACSLAKDQD-----SYE 111
             W+ D +       +  + I+    N           +  V     A D +       +
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 112 ASLVVTEGESVYDFCWFPHMSASD--------PTSCVFASTTRDHPIHLWDATTGLLRCT 163
            +  V   +          +  +         P    FA  +    I +           
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 164 YRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST 213
            +        T         +        +   R+F  +    +     T
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWD-ATTGLLRCTYRAYDAVDEITAAFSVAF 181
                    +  +    + A+ + D  I ++       +     A+   D +    ++ +
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVN---NLLW 266

Query: 182 NPTGTKIFAGYNKSVRVFDV 201
               T + +G +  ++ ++V
Sbjct: 267 ETPSTLVSSGADACIKRWNV 286

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 171 DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           D I+    +   P+ + +    ++ S+ V+      ++      L  +   +  ++    
Sbjct: 12  DYIS---DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLC-CN 63

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNM 255
           F       + +G+             
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGS 89

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 18/96 (18%)

Query: 59  PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
           P +++  IK  P  S  L +S D +L ++       + D+                    
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------------RY 55

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
              +    +  +            +   +       
Sbjct: 56  KHPLLCCNFIDN----TDLQIYVGTVQGEILKVDLI 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
                     +  P +   A+ + D+ + +W+                       SV + 
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN--SVIWL 278

Query: 183 PTGTKIFAGYNKSVRVFDV 201
              T + AG + +++ ++V
Sbjct: 279 NETTIVSAGQDSNIKFWNV 297

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 5/79 (6%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
                        P     AS + D  I +W+  T  +  T      ++       +   
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQLGII 290

Query: 183 PTGTKIFAG-YNKSVRVFD 200
            T   + +   N  +   +
Sbjct: 291 WTKQALVSISANGFINFVN 309

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-DQDSYEASLVVTEGESVYD 124
             +   G   +   ++    +    E+  S    A + +       + S  ++ G     
Sbjct: 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDA 318

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG 158
                     D  S  +A++     + ++DA + 
Sbjct: 319 IIAAQ-----DGASDNYANSAGTEVLDIYDAASD 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.59
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.43
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.18
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.05
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.92
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.89
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.88
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.8
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.75
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.53
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.53
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.48
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.27
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.11
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.73
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.33
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.38
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.08
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.89
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.86
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.85
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.48
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.47
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.57
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.48
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.21
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.62
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.59
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.45
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.38
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.5
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.74
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	90.5
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.04
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.51
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.7
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	84.82

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-35  Score=232.26  Aligned_cols=217  Identities=17%  Similarity=0.273  Sum_probs=161.5

Q ss_pred             eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc-------ccccC--------CCCccccee-
Q 023672           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-------CSLAK--------DQDSYEASL-  114 (279)
Q Consensus        51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~-  114 (279)
                      +..+++.||.+.|++++|+|++++|+||+.||+|+|||+.++........       ....+        ..+..+... 
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            34458999999999999999999999999999999999988755321110       00000        000000000 


Q ss_pred             -------------eecCCCceEEEEeeC----------------------------------cccccCCCCcEEEEecCC
Q 023672          115 -------------VVTEGESVYDFCWFP----------------------------------HMSASDPTSCVFASTTRD  147 (279)
Q Consensus       115 -------------~~~~~~~v~~~~~~~----------------------------------~~~~~~~~~~~l~s~~~d  147 (279)
                                   ...+...........                                  ....+.+.+.++++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence                         000000000000000                                  023456778889999999


Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceE
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (279)
                      +.|++||+++++.+..+..+..     .|++++|+|++++|+++ .|+.|++||++..    .....+  ....+...+.
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~-----~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~----~~~~~~--~~~~~~~~i~  274 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHES-----DINAICFFPNGNAFATGSDDATCRLFDLRAD----QELMTY--SHDNIICGIT  274 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEE--CCTTCCSCEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEeeccc----cccccc--ccccccCceE
Confidence            9999999999999999988776     89999999999999966 9999999999873    222121  1145667899


Q ss_pred             EEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       227 ~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +++|+| ++.+|++|+.||.|++||+.+++++..+.+|.++|++++|+|||++
T Consensus       275 ~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         275 SVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             EEEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence            999999 8999999999999999999999999999999999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-34  Score=221.92  Aligned_cols=222  Identities=11%  Similarity=0.133  Sum_probs=165.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc---------cccccC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN---------ACSLAK  105 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~  105 (279)
                      .+.+||+.+....+      .+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.......         .....+
T Consensus        39 ~v~i~~~~~~~~~~------~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  112 (311)
T d1nr0a1          39 SVYTVPVGSLTDTE------IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS  112 (311)
T ss_dssp             EEEEEETTCSSCCE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT
T ss_pred             EEEEEECCCCceeE------EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc
Confidence            46788988877765      567899999999999999999999999999999998764321100         000000


Q ss_pred             -------C---CCcccc----------eeeecCCCceEEEEeeCcccccCCCCcE-EEEecCCCcEEEEECCCCeeeEEE
Q 023672          106 -------D---QDSYEA----------SLVVTEGESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHLWDATTGLLRCTY  164 (279)
Q Consensus       106 -------~---~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~i~d~~~~~~~~~~  164 (279)
                             .   ......          .....|...|.+++|       +|++.+ |++|+.|+.|++||+++++....+
T Consensus       113 d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~-------~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~  185 (311)
T d1nr0a1         113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  185 (311)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-------cccceeeeccccccccccccccccccccccc
Confidence                   0   000000          001122334555544       777774 888999999999999999998888


Q ss_pred             eccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC
Q 023672          165 RAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (279)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~  243 (279)
                      ..+..     .|+++.|+|++++++++ .|+.|++||++++ .....+........+|...|.+++|+| ++.+|++|+.
T Consensus       186 ~~~~~-----~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~  258 (311)
T d1nr0a1         186 GEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASA  258 (311)
T ss_dssp             CCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEET
T ss_pred             ccccc-----cccccccCccccccccccccccccccccccc-cccccccccccccccccccccccccCC-CCCEEEEEeC
Confidence            87776     89999999999999966 8999999999874 333333333334468899999999999 8999999999


Q ss_pred             CCcEEEEecCCCeEEEEEeecCC---CEEEEEEccC
Q 023672          244 SQTSAIYREDNMELLYVLHGQEG---GVTHVSKLSS  276 (279)
Q Consensus       244 dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~spd  276 (279)
                      ||.|+|||+++++++.++..|..   .+.++.|+++
T Consensus       259 Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~  294 (311)
T d1nr0a1         259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  294 (311)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC
Confidence            99999999999999999987653   4566666654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-33  Score=215.13  Aligned_cols=201  Identities=18%  Similarity=0.193  Sum_probs=161.4

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc----
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH----  130 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----  130 (279)
                      .+.||++.|++|+|+|++++|+||+.||+|+|||+.++.......                 .|...|.+++|+|.    
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-----------------~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----------------GHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-----------------CCSSCEEEEEECTTSSEE
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-----------------CCCCcEEEEeeecccccc
Confidence            678999999999999999999999999999999998775532211                 12223333333221    


Q ss_pred             -------------------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeE
Q 023672          131 -------------------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (279)
Q Consensus       131 -------------------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  179 (279)
                                                     ...+++++..+++++.|+.+++||+++++....+..+..     .+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMV  149 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-----cceee
Confidence                                           235688899999999999999999999999988887776     78899


Q ss_pred             EECCCCCEEEEe-cCCeEEEEEccCCCCceeee-----------------------------------------------
Q 023672          180 AFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY-----------------------------------------------  211 (279)
Q Consensus       180 ~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~-----------------------------------------------  211 (279)
                      +|+|++.+++++ .|+.|++|++.+... ...+                                               
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  228 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  228 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             ecccCCCEEEEEeCCCeEEEEeecccee-eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence            999999999966 999999999876321 1000                                               


Q ss_pred             --------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          212 --------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       212 --------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                              ......+.+|...|.+++|+| ++.+|++|+.||.|++||+++++++.++.+|.++|++++|+|||++
T Consensus       229 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence                    000112246788999999999 8999999999999999999999999999999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-32  Score=211.30  Aligned_cols=220  Identities=15%  Similarity=0.198  Sum_probs=164.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc--cccc-------cccccC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS--YDVN-------ACSLAK  105 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~--~~~~-------~~~~~~  105 (279)
                      .+.+||+........... ....+|.+.|.+++|+|++++|++|+.||+|++||+......  ....       .....+
T Consensus        73 ~V~iWd~~~~~~~~~~~~-~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  151 (337)
T d1gxra_          73 CVKVWDISHPGNKSPVSQ-LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP  151 (337)
T ss_dssp             EEEEEETTSTTCCSCSEE-EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred             EEEEEEccCCcccceeEE-eeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccc
Confidence            478899877655443222 245689999999999999999999999999999998754321  0000       000000


Q ss_pred             --------CCCccc----------ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEecc
Q 023672          106 --------DQDSYE----------ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY  167 (279)
Q Consensus       106 --------~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~  167 (279)
                              ..+..+          ......+...+.++       ++++++..+++++.|+.|++||+++++.+..+...
T Consensus       152 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l-------~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~  224 (337)
T d1gxra_         152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI-------DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT  224 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-------EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             cccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccceeecccccc
Confidence                    000001          01111223344444       45888999999999999999999999988777543


Q ss_pred             CccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672          168 DAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (279)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~  246 (279)
                      .      .|.+++|+|++++++++ .|+.+++||++.+.    .. ..    ..|...|.+++|+| ++.+|++|+.||.
T Consensus       225 ~------~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~-~~----~~~~~~i~~v~~s~-~g~~l~s~s~Dg~  288 (337)
T d1gxra_         225 S------QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KY-QL----HLHESCVLSLKFAY-CGKWFVSTGKDNL  288 (337)
T ss_dssp             S------CEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EE-EE----CCCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             c------ceEEEEEcccccccceeccccccccccccccc----cc-cc----cccccccceEEECC-CCCEEEEEeCCCe
Confidence            3      88999999999999966 99999999998742    11 11    57888999999999 8999999999999


Q ss_pred             EEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          247 SAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       247 i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |++||+.+++++..+. |...|++++|+|||++
T Consensus       289 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         289 LNAWRTPYGASIFQSK-ESSSVLSCDISVDDKY  320 (337)
T ss_dssp             EEEEETTTCCEEEEEE-CSSCEEEEEECTTSCE
T ss_pred             EEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCE
Confidence            9999999999987766 7889999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-32  Score=216.31  Aligned_cols=216  Identities=14%  Similarity=0.195  Sum_probs=166.2

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||..+++..    ....+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.....               ..
T Consensus        30 ~i~iw~~~~~~~~----~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~---------------~~   90 (371)
T d1k8kc_          30 EVHIYEKSGNKWV----QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT---------------LV   90 (371)
T ss_dssp             EEEEEEEETTEEE----EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE---------------EE
T ss_pred             EEEEEECCCCCEE----EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc---------------cc
Confidence            5778888765432    2336789999999999999999999999999999999986532111               02


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                      ...+...|.++.|       +|+++.|++++.|+.|++|++............. ..+...|.+++|+|++++|+++ .|
T Consensus        91 ~~~~~~~v~~i~~-------~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          91 ILRINRAARCVRW-------APNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             CCCCSSCEEEEEE-------CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccc-------ccccccceeecccCcceeeeeecccccccccccc-cccccccccccccccccceeccccC
Confidence            2345668898887       7789999999999999999987765433322111 1112378999999999999966 99


Q ss_pred             CeEEEEEccCCCCceee----------eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          194 KSVRVFDVHRPGRDFEK----------YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      +.|++||+.........          .........+|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+..
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceeeeec
Confidence            99999998753211000          0011122367888999999999 899999999999999999999999999999


Q ss_pred             cCCCEEEEEEccCCC
Q 023672          264 QEGGVTHVSKLSSAY  278 (279)
Q Consensus       264 ~~~~v~~~~~spdg~  278 (279)
                      |..+|.+++|+|||+
T Consensus       242 ~~~~v~s~~fs~d~~  256 (371)
T d1k8kc_         242 ETLPLLAVTFITESS  256 (371)
T ss_dssp             SSCCEEEEEEEETTE
T ss_pred             ccccceeeeecCCCC
Confidence            999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6e-31  Score=202.02  Aligned_cols=213  Identities=13%  Similarity=0.130  Sum_probs=149.9

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc--------ccccC-------CCCcc-------
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA--------CSLAK-------DQDSY-------  110 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~-------~~~~~-------  110 (279)
                      .+++.||.+.|++++|+|++++|++|+.||+|++||++++........        ....+       ..+..       
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            347899999999999999999999999999999999987654221110        00000       00000       


Q ss_pred             ------cceeeecCCCceEEEEeeCc------------------------------ccccCCCCcEEEEecCCCcEEEEE
Q 023672          111 ------EASLVVTEGESVYDFCWFPH------------------------------MSASDPTSCVFASTTRDHPIHLWD  154 (279)
Q Consensus       111 ------~~~~~~~~~~~v~~~~~~~~------------------------------~~~~~~~~~~l~s~~~d~~i~i~d  154 (279)
                            .......+...+..+.++|.                              +++++|++++|++++.|+.|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  00011112233444444332                              457889999999999999999999


Q ss_pred             CCCCeeeEE-EeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672          155 ATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       155 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (279)
                      +++++.... ...+..     .|.+++|+|++++++++ .|+.|++||+.++ .......    ...+|...|.+++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~~~----~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         165 LSGASVSEVKTIVHPA-----EITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHTN----SWTFHTAKVACVSWSP  234 (299)
T ss_dssp             EETTEEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCCC----CCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccc-----ccccccccccccccccccccccccccccccc-ccccccc----cccccccccccccccc
Confidence            988765443 223333     89999999999999966 9999999999873 2222222    2367899999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCeEEEEE--eec-CCCEEEEEEccC
Q 023672          233 THTGMLAIGSYSQTSAIYREDNMELLYVL--HGQ-EGGVTHVSKLSS  276 (279)
Q Consensus       233 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~-~~~v~~~~~spd  276 (279)
                       ++.+|++|+.||.|++||++++.....+  ..| ...|..+.|.++
T Consensus       235 -~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  280 (299)
T d1nr0a2         235 -DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE  280 (299)
T ss_dssp             -TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET
T ss_pred             -cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC
Confidence             8999999999999999999877543322  233 446777766544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.4e-30  Score=206.02  Aligned_cols=190  Identities=15%  Similarity=0.183  Sum_probs=151.2

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      .++|+|++|+|++++||+|+.||.|+|||+.+++....               .....|..+|.+++|       +|+++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~---------------~~l~gH~~~V~~l~f-------sp~~~   64 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV---------------HELKEHNGQVTGVDW-------APDSN   64 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE---------------EEEECCSSCEEEEEE-------ETTTT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE---------------EEecCCCCCEEEEEE-------CCCCC
Confidence            46799999999999999999999999999976432110               122457789999988       66889


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      +|++|+.|++|++||+.++.....+.....   ...|.+++|+|+++.++++ .|+.+++|++............    .
T Consensus        65 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~----~  137 (371)
T d1k8kc_          65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRI---NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI----K  137 (371)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCC---SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE----C
T ss_pred             EEEEEECCCeEEEEeecccccccccccccc---cccccccccccccccceeecccCcceeeeeeccccccccccc----c
Confidence            999999999999999988776555443221   1279999999999999976 9999999999874332222222    2


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC------------------eEEEEEeecCCCEEEEEEccCCCC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------------------ELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ..|...|.+++|+| ++.+|++|+.|+.|++||+...                  .++.....|...|.+++|+|+|++
T Consensus       138 ~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         138 KPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             TTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             cccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            67888999999999 8999999999999999997542                  356677788999999999999863

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7e-30  Score=202.84  Aligned_cols=237  Identities=16%  Similarity=0.292  Sum_probs=142.9

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCC-CCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD-QDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~  113 (279)
                      ...+|+....+.+..  ......+|++.|+||+|+|||++||+|+ |++|+|||+.++.............. .......
T Consensus        39 ~~~~~~~~~~~~~~~--~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (388)
T d1erja_          39 YYILYNPALPREIDV--ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS  115 (388)
T ss_dssp             CEEEECTTSCCCEEE--EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------
T ss_pred             cEEEeCCCCCcceee--eeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccc
Confidence            345677655543321  1112336999999999999999999987 89999999998765433221111000 0001111


Q ss_pred             eeecCCCceEEEEeeCc-----------------------------------cccc------------------------
Q 023672          114 LVVTEGESVYDFCWFPH-----------------------------------MSAS------------------------  134 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~-----------------------------------~~~~------------------------  134 (279)
                      ....+...|.+++|+|+                                   ++.+                        
T Consensus       116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            22234456667766432                                   0111                        


Q ss_pred             ------------------CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc--cccccceeeEEECCCCCEEEEe-cC
Q 023672          135 ------------------DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTGTKIFAG-YN  193 (279)
Q Consensus       135 ------------------~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~d  193 (279)
                                        .+++.+|++++.|+.|++||++++.....+.....  ..+...|.+++|+|++++|+++ .|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence                              12333344444444444444444433333221110  1223468899999999999866 89


Q ss_pred             CeEEEEEccCCCCceeee----eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEE
Q 023672          194 KSVRVFDVHRPGRDFEKY----STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT  269 (279)
Q Consensus       194 ~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~  269 (279)
                      +.|++||+++........    .........|...|.+++|+| ++.+|++|+.||.|++||+++++++.++.+|.+.|.
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~  354 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI  354 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence            999999998642211100    011112256788999999999 899999999999999999999999999999999999


Q ss_pred             EEEEcc
Q 023672          270 HVSKLS  275 (279)
Q Consensus       270 ~~~~sp  275 (279)
                      ++++++
T Consensus       355 ~~~~~~  360 (388)
T d1erja_         355 SVAVAN  360 (388)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            998643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=197.62  Aligned_cols=186  Identities=12%  Similarity=0.195  Sum_probs=153.0

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      .|...|.+++|+|+|++|++|+ ||.|+|||+.++......            .......|...|.+++|       +|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~------------~~~~~~~h~~~I~~v~~-------s~d  108 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------SQLDCLNRDNYIRSCKL-------LPD  108 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS------------EEEECSCTTSBEEEEEE-------CTT
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee------------EEeeecCCCCcEEEEEE-------cCC
Confidence            7999999999999999999998 899999999865432111            11123356678999988       778


Q ss_pred             CcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeec
Q 023672          138 SCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +++|++|+.|+.|++||+...  +....+..+..     .+.+++|+|++.+++++ .|+.|++||++++    +.....
T Consensus       109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----~~~~~~  179 (337)
T d1gxra_         109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQF  179 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEE
T ss_pred             CCEEEEeecccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc----cccccc
Confidence            999999999999999998754  44555555554     78899999999999965 9999999999873    222222


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                          .+|...+.+++|++ ++..+++|+.|+.|++||+++++.+..+. |...|.+++|+|+|+
T Consensus       180 ----~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         180 ----QGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE  237 (337)
T ss_dssp             ----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS
T ss_pred             ----cccccccccccccc-cccccccccccccccccccccceeecccc-cccceEEEEEccccc
Confidence                57888999999999 89999999999999999999999887776 788999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.8e-29  Score=197.47  Aligned_cols=145  Identities=8%  Similarity=0.122  Sum_probs=113.7

Q ss_pred             ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc-cccccceeeEEECCCCCEEEEe-cCC---eEEEEEccCCC
Q 023672          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFAG-YNK---SVRVFDVHRPG  205 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~---~i~~~d~~~~~  205 (279)
                      +++++|++ +|++|+.|++|++||+.+++.+..+..... .++..+|.+++|+|++++|++| .|+   .|++||+.++ 
T Consensus       189 ~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g-  266 (393)
T d1sq9a_         189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-  266 (393)
T ss_dssp             EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc-
Confidence            35678887 889999999999999999988877664322 2344589999999999999976 665   5999999874 


Q ss_pred             Cceeeee------ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEE----EEEEcc
Q 023672          206 RDFEKYS------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT----HVSKLS  275 (279)
Q Consensus       206 ~~~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~----~~~~sp  275 (279)
                      .....+.      .......+|...|++++|+| ++.+|++|+.|++|+|||+.+++++.++.+|.+.|.    .++|+|
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~  345 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE  345 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECC
Confidence            3222221      11223358999999999999 899999999999999999999999999999987664    467777


Q ss_pred             CCC
Q 023672          276 SAY  278 (279)
Q Consensus       276 dg~  278 (279)
                      +|.
T Consensus       346 ~~~  348 (393)
T d1sq9a_         346 HGD  348 (393)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-28  Score=191.37  Aligned_cols=130  Identities=15%  Similarity=0.244  Sum_probs=103.6

Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~  212 (279)
                      .++++.++++++.|+.|++||++.++.+..+..+..     .+.++++++  ++++++ .|+.|++||+... +....+.
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~-~~~~~~~  254 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-----LTSGMELKD--NILVSGNADSTVKIWDIKTG-QCLQTLQ  254 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-----CEEEEEEET--TEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccceeeeEeccccc-----ceeEEecCC--CEEEEEcCCCEEEEEecccc-ccccccc
Confidence            455778899999999999999999999888887765     777777765  577765 9999999999873 2222221


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-----ecCCCEEEEEEccCCC
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~spdg~  278 (279)
                      .    ...|...+.++.+++   .++++|+.||.|++||+++++++..+.     +|...|++++|+|+|+
T Consensus       255 ~----~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         255 G----PNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  318 (342)
T ss_dssp             S----TTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             c----cceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC
Confidence            1    145667777777755   589999999999999999999988875     4667899999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.3e-28  Score=186.16  Aligned_cols=186  Identities=14%  Similarity=0.137  Sum_probs=150.7

Q ss_pred             cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      +..+++.+.+++++|+|+.|+.++ ++.|.+||+++.....                 ....|...|.+++|       +
T Consensus        13 p~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~-----------------~~~~H~~~v~~~~~-------s   67 (311)
T d1nr0a1          13 PRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE-----------------IYTEHSHQTTVAKT-------S   67 (311)
T ss_dssp             CCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE-----------------EECCCSSCEEEEEE-------C
T ss_pred             CCCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE-----------------EEcCCCCCEEEEEE-------e
Confidence            344566778899999999999886 6679999998653311                 33457789999987       7


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeee--EEEeccCccccccceeeEEECCCCCEEEEe---cCCeEEEEEccCCCCceee
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFAG---YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~d~~i~~~d~~~~~~~~~~  210 (279)
                      |++++|++|+.||+|++||+.++...  ..+..+..     .|.+++|+|++++++++   .+..+++|++.+. +   .
T Consensus        68 p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-~---~  138 (311)
T d1nr0a1          68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-T---S  138 (311)
T ss_dssp             TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-C---B
T ss_pred             CCCCeEeccccCceEeeeeeeccccccccccccccC-----ccccccccccccccccccccccccccccccccc-c---c
Confidence            78999999999999999999987644  44555554     89999999999988854   3567999999874 2   2


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ...    +.+|...|.+++|+|++...|++|+.|+.|++||++++++...+..|..+|++++|+|+|++
T Consensus       139 ~~~----l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~  203 (311)
T d1nr0a1         139 NGN----LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  203 (311)
T ss_dssp             CBC----CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ccc----ccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccc
Confidence            222    36888999999999943346889999999999999999999999999999999999999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-27  Score=184.21  Aligned_cols=198  Identities=11%  Similarity=0.059  Sum_probs=151.7

Q ss_pred             ccCCC-CCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           55 TSSIP-NNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        55 ~~~~h-~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      .+.+| ...|++++|+|  ++++|++|+.||+|+|||+..+.........         .......+..+|.+++|    
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~---------~~~~~~~~~~~v~~v~~----  123 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN---------VKSEFQVLAGPISDISW----  123 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE---------EEEEEECCSSCEEEEEE----
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc---------cccccccccCcEEEEEE----
Confidence            45677 46899999998  6689999999999999999765432211110         00122345668888888    


Q ss_pred             cccCCCCcEEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE-EEe-cCCeEEEEEccCCCCc
Q 023672          132 SASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAG-YNKSVRVFDVHRPGRD  207 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~d~~i~~~d~~~~~~~  207 (279)
                         ++++.++++++.  ++.+.+|+.++++.+..+..|..     .|.+++|+|++..+ +++ .|+.+++||+... +.
T Consensus       124 ---s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~-~~  194 (325)
T d1pgua1         124 ---DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ-----RINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KF  194 (325)
T ss_dssp             ---CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS-----CEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EE
T ss_pred             ---CCCCCccceeeccccceEEEEeecccccceeeeeccc-----ccccccccccccceEEEeeccccccccccccc-cc
Confidence               678888877654  67899999999999888887765     89999999998764 444 8999999999763 11


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc---cCCC
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL---SSAY  278 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s---pdg~  278 (279)
                      ..   .. ....+|...|.+++|+|+.+.+|++++.|+.|++||+++++++..+.+|..++.++.|+   |||+
T Consensus       195 ~~---~~-~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         195 SA---SD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             EE---EE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSS
T ss_pred             ce---ec-ccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCC
Confidence            11   11 22357888999999999667899999999999999999999999999988877666665   5665

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-27  Score=183.38  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=140.2

Q ss_pred             eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (279)
Q Consensus        53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (279)
                      .+...+|++.|++|+|+|++++||+|+.||+|+|||++++....              .......|..+|.+++|+|.  
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~--------------~~~~~~~h~~~V~~v~f~~~--   67 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--------------DLLQSLRYKHPLLCCNFIDN--   67 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--------------EEEEEEECSSCEEEEEEEES--
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce--------------EEEEecCCCCCEEEEEEeCC--
Confidence            34788999999999999999999999999999999997543211              11123457889999998653  


Q ss_pred             ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc------------------------------------------
Q 023672          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------------------------  170 (279)
Q Consensus       133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------------------  170 (279)
                          ++.+|++|+.|+.|++|++..+........+...                                          
T Consensus        68 ----~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~  143 (342)
T d1yfqa_          68 ----TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN  143 (342)
T ss_dssp             ----SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred             ----CCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc
Confidence                4568999999999999998765433322111100                                          


Q ss_pred             --ccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee------------------------------------
Q 023672          171 --DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY------------------------------------  211 (279)
Q Consensus       171 --~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~------------------------------------  211 (279)
                        ..........+.+.+..++++ .|+.|++||++.........                                    
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~  223 (342)
T d1yfqa_         144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             cccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEe
Confidence              000012233455566666654 88889999887532111000                                    


Q ss_pred             -----------------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          212 -----------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       212 -----------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                                       ........+|...+.+++|+| ++.+|++|+.||.|++||+.+++++..+..+ ..+..++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s  301 (342)
T d1yfqa_         224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA  301 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEE
T ss_pred             cCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEE
Confidence                             000011134566789999999 8999999999999999999999999888643 345567788


Q ss_pred             cCCC
Q 023672          275 SSAY  278 (279)
Q Consensus       275 pdg~  278 (279)
                      |+|+
T Consensus       302 ~~~~  305 (342)
T d1yfqa_         302 CSDN  305 (342)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            8875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=5.2e-27  Score=182.47  Aligned_cols=192  Identities=19%  Similarity=0.292  Sum_probs=141.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc--------------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA--------------  100 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--------------  100 (279)
                      .+++||+.+++...      .+.+|.+.|.+++|+|+++++++|+.|+.+.+|+............              
T Consensus        78 ~v~iWd~~~~~~~~------~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (340)
T d1tbga_          78 KLIIWDSYTTNKVH------AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             EEEEEETTTTEEEE------EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEE
T ss_pred             ceeeeecccceeEE------EEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccc
Confidence            45678877776654      5678999999999999999999999999999999765432100000              


Q ss_pred             ----------------------------------------------ccccCCCCcccc----------eeeecCCCceEE
Q 023672          101 ----------------------------------------------CSLAKDQDSYEA----------SLVVTEGESVYD  124 (279)
Q Consensus       101 ----------------------------------------------~~~~~~~~~~~~----------~~~~~~~~~v~~  124 (279)
                                                                    .......+..+.          .....|...|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~  231 (340)
T d1tbga_         152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEE
Confidence                                                          000000000000          011123344555


Q ss_pred             EEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccC
Q 023672          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR  203 (279)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~  203 (279)
                      ++       ++|++.+|++|+.|+.|++||++.......+.....   ...+.+++|+|++++|++| .||.|++||+.+
T Consensus       232 v~-------~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         232 IC-------FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI---ICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EE-------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CSCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             EE-------ECCCCCEEEEEeCCCeEEEEeecccccccccccccc---cCceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence            54       488999999999999999999999887776654332   1268999999999999976 899999999987


Q ss_pred             CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      +    +....+    .+|..+|++++|+| ++.+|++|+.||.|+|||
T Consensus       302 ~----~~~~~~----~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         302 A----DRAGVL----AGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             C----CEEEEE----CCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             C----cEEEEE----cCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence            4    333344    68999999999999 899999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=182.26  Aligned_cols=212  Identities=16%  Similarity=0.144  Sum_probs=142.5

Q ss_pred             eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc---------cccccCCCCc-------------
Q 023672           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN---------ACSLAKDQDS-------------  109 (279)
Q Consensus        52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~-------------  109 (279)
                      ..+++.||.+.|++++|+|    |+||+.||+|++||+.++.......         ........+.             
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~~   80 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG   80 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccccccc
Confidence            3457888888888888886    8888888888888876543210000         0000000000             


Q ss_pred             ---------------------ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCC-cEEEEECCCCeeeEEEecc
Q 023672          110 ---------------------YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-PIHLWDATTGLLRCTYRAY  167 (279)
Q Consensus       110 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~i~d~~~~~~~~~~~~~  167 (279)
                                           .........+..+..+.+.....++++++..+++++.++ .|++|++...+....+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~  160 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP  160 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeec
Confidence                                 000011111112222233333455677777887777665 7999999876655544432


Q ss_pred             CccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC---------CCcE
Q 023672          168 DAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---------HTGM  237 (279)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------~~~~  237 (279)
                      .    ...+.+++|+|++.+|++| .|+.|++||+.++    ..   ......+|...|.+++|+|.         ++.+
T Consensus       161 ~----~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~----~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         161 L----RAKPSYISISPSETYIAAGDVMGKILLYDLQSR----EV---KTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             C----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EE---EECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             c----CCceeEEEeccCccccccccccccccceeeccc----cc---ccccccccccccceeeecccccccccccCCCCe
Confidence            2    1278999999999999977 9999999999874    11   11223688999999999872         3468


Q ss_pred             EEEEeCCCcEEEEecCC-CeEEEEEeecCCCEEEEEEccCCC
Q 023672          238 LAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       238 l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      |++|+.|+.|++||+++ .+.+..+.+|...|++++|+|+++
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~  271 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST  271 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred             eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE
Confidence            99999999999999977 556777788999999999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.4e-27  Score=180.21  Aligned_cols=180  Identities=21%  Similarity=0.339  Sum_probs=144.7

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.++....      .+.+|...+.+++|+|++++|++++.|+.|++|++.++....                 .
T Consensus       124 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-----------------~  180 (317)
T d1vyhc1         124 TIKMWEVQTGYCVK------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-----------------E  180 (317)
T ss_dssp             EEEEEETTTCCEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------E
T ss_pred             ceeEeecccceeee------EEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeE-----------------E
Confidence            45678887776654      567899999999999999999999999999999998764321                 1


Q ss_pred             eecCCCceEEEEeeCcc-------------cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEE
Q 023672          115 VVTEGESVYDFCWFPHM-------------SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF  181 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~-------------~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (279)
                      ...+...+..+.|.|..             ......+.++++++.|+.|++||+++++++..+..+..     .|.+++|
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-----~v~~~~~  255 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-----WVRGVLF  255 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEE
T ss_pred             EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC-----CEEEEEE
Confidence            22344567777776642             12344567899999999999999999999999988776     8999999


Q ss_pred             CCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       182 ~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                      +|++++|+++ .||.|++||++++ +   .+..+    .+|...|++++|+| ++.+|++|+.||+|+|||
T Consensus       256 ~~~~~~l~s~~~dg~i~iwd~~~~-~---~~~~~----~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         256 HSGGKFILSCADDKTLRVWDYKNK-R---CMKTL----NAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSSSCEEEEETTTEEEEECCTTS-C---CCEEE----ECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCeEEEEECCCC-c---EEEEE----cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence            9999999966 9999999999874 2   23333    68899999999999 899999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.1e-24  Score=169.03  Aligned_cols=197  Identities=11%  Similarity=0.076  Sum_probs=145.1

Q ss_pred             eeeEecCCCCcccceee--eeeccCCCCCceEEEEEccCCCeEEEeeC--CCeEEEEeCCCCccccccccccccCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYN--QFRTSSIPNNFLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  110 (279)
                      .+.+||...........  .......|.+.|.+++|++++++|++++.  ++.+.+|+.+++....              
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------  153 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG--------------  153 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEE--------------
T ss_pred             CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccce--------------
Confidence            67788887665544322  22245678999999999999999887654  6789999998654321              


Q ss_pred             cceeeecCCCceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEE
Q 023672          111 EASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKI  188 (279)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  188 (279)
                         ....|...|.++.|+       |++. .+++++.|+.|++||+...+....+..+.  .+...|.+++|+|+ +.++
T Consensus       154 ---~~~~h~~~v~~~~~~-------~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~v~~v~~~pd~~~~l  221 (325)
T d1pgua1         154 ---EVSGHSQRINACHLK-------QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH--KQGSFVRDVEFSPDSGEFV  221 (325)
T ss_dssp             ---ECCSCSSCEEEEEEC-------SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS--CTTCCEEEEEECSTTCCEE
T ss_pred             ---eeeeccccccccccc-------ccccceEEEeecccccccccccccccceeccccc--CCCCccEEeeeccccceec
Confidence               123466789999884       4554 57889999999999999887776665432  22237899999997 5777


Q ss_pred             EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEc---cCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672          189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS---PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (279)
Q Consensus       189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  264 (279)
                      +++ .|+.|++||++++    +....+    .+|..++.++.|+   | ++.+|++++.|+.|+|||+++++++..+..|
T Consensus       222 ~s~~~d~~i~iwd~~~~----~~~~~l----~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         222 ITVGSDRKISCFDGKSG----EFLKYI----EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             EEEETTCCEEEEETTTC----CEEEEC----CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccceeeeeeccc----cccccc----cccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            765 9999999999874    333344    4555555444444   5 6789999999999999999999999888876


Q ss_pred             CC
Q 023672          265 EG  266 (279)
Q Consensus       265 ~~  266 (279)
                      ..
T Consensus       293 ~~  294 (325)
T d1pgua1         293 KQ  294 (325)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-24  Score=171.28  Aligned_cols=186  Identities=17%  Similarity=0.247  Sum_probs=127.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEc-cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWS-PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+||..+.....      ....+ ....++.+. +++++|++|+.||.|++|+..++..........          .
T Consensus       186 ~i~~~d~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----------~  248 (388)
T d1erja_         186 TVRIWDLRTGQCSL------TLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN----------E  248 (388)
T ss_dssp             EEEEEETTTTEEEE------EEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             eeeeeecccccccc------ccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc----------c
Confidence            45566666555433      23334 344555555 488999999999999999998765433221111          1


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC-------ccccccceeeEEECCCCC
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-------AVDEITAAFSVAFNPTGT  186 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~  186 (279)
                      ....|...|.++.|       +|++.+|++++.|+.|++||++++..........       ...+...|.+++|+|+++
T Consensus       249 ~~~~h~~~v~~l~~-------s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  321 (388)
T d1erja_         249 SGTGHKDSVYSVVF-------TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE  321 (388)
T ss_dssp             --CCCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             cccCCCCCEEEEEE-------CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC
Confidence            22345678888877       7789999999999999999998765432221110       011223789999999999


Q ss_pred             EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE------ccCCCcEEEEEeCCCcEEEEecC
Q 023672          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF------SPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      +|++| .||.|++||++++    +.+..+    .+|.+.|.++++      +| ++.+|++|+.||+|+|||++
T Consensus       322 ~l~sg~~dg~i~vwd~~~~----~~~~~l----~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         322 YILSGSKDRGVLFWDKKSG----NPLLML----QGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEETTSEEEEEETTTC----CEEEEE----ECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCC----cEEEEE----eCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            99976 9999999999984    333344    689999999875      56 78899999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.7e-23  Score=163.10  Aligned_cols=191  Identities=13%  Similarity=0.207  Sum_probs=143.2

Q ss_pred             ccCCCCCce-EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFL-KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v-~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      ++.||.+.| +|++|  ++++|+||+.||+|+|||+.+++...                 ....|..+|.+++|+     
T Consensus         7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~-----------------~l~~H~~~V~~l~~s-----   62 (355)
T d1nexb2           7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL-----------------QLSGHDGGVWALKYA-----   62 (355)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE-----------------EEECCSSCEEEEEEE-----
T ss_pred             EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEECCCCCEEEEEEc-----
Confidence            688999886 56555  67899999999999999998764421                 234577899999884     


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee---
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE---  209 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~---  209 (279)
                        |+ .+|++|+.|++|++|++...+...........   .......+++++.+++++ .|+.|++||+++......   
T Consensus        63 --~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~  136 (355)
T d1nexb2          63 --HG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST---VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE  136 (355)
T ss_dssp             --TT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC---EEEEEEEEETTEEEEEEEETTSEEEEEECCC---------
T ss_pred             --CC-CEEEEEeccccccccccccccccccccccccc---ccccccccccccceeeeecCCCcEEEEEccCCceeccccc
Confidence              33 48999999999999999998877665544321   134556777888888865 889999999875211000   


Q ss_pred             ------------------------------------e---------e-------eecccccCCCCCceEEEEEccCCCcE
Q 023672          210 ------------------------------------K---------Y-------STLKGNKEGQAGIMSAIAFSPTHTGM  237 (279)
Q Consensus       210 ------------------------------------~---------~-------~~~~~~~~~~~~~v~~~~~sp~~~~~  237 (279)
                                                          .         +       ........++...+.++.|+| ++.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  215 (355)
T d1nexb2         137 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKR  215 (355)
T ss_dssp             --CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTE
T ss_pred             cceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-ccee
Confidence                                                0         0       000011235667788999999 8999


Q ss_pred             EEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       238 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      +++++.|+.|++||++++.++..+.+|...|.+++|+++
T Consensus       216 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~  254 (355)
T d1nexb2         216 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK  254 (355)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS
T ss_pred             eecccccceEEeeeccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.6e-23  Score=161.16  Aligned_cols=220  Identities=11%  Similarity=0.159  Sum_probs=151.8

Q ss_pred             eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-----------
Q 023672           34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-----------  102 (279)
Q Consensus        34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-----------  102 (279)
                      -.+++||+.+++++.      .+.+|.+.|++++|+|+ .+|++|+.|++|++|++.............           
T Consensus        33 g~i~vWd~~~~~~~~------~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (355)
T d1nexb2          33 KMIRVYDSINKKFLL------QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY  105 (355)
T ss_dssp             TEEEEEETTTTEEEE------EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEE
T ss_pred             CeEEEEECCCCcEEE------EEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccc
Confidence            368899999887765      67899999999999986 589999999999999998765421111000           


Q ss_pred             ------ccCCCCcccceeeecCCCc-----------------------eEEEEeeCc-ccccCCCCcEEEEecCCCcEEE
Q 023672          103 ------LAKDQDSYEASLVVTEGES-----------------------VYDFCWFPH-MSASDPTSCVFASTTRDHPIHL  152 (279)
Q Consensus       103 ------~~~~~~~~~~~~~~~~~~~-----------------------v~~~~~~~~-~~~~~~~~~~l~s~~~d~~i~i  152 (279)
                            .....+..+..........                       +.....+.. .....+++.+++++..|+.|++
T Consensus       106 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~  185 (355)
T d1nexb2         106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV  185 (355)
T ss_dssp             TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeee
Confidence                  0000111111000000000                       000000000 1123456789999999999999


Q ss_pred             EECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEc
Q 023672          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS  231 (279)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  231 (279)
                      ||+++++.+.....+..     .+.++.|+|++..++++ .|+.|++||++++    .....+    .+|...|.+++++
T Consensus       186 ~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~----~~h~~~v~~~~~~  252 (355)
T d1nexb2         186 WDVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTL----QGHTALVGLLRLS  252 (355)
T ss_dssp             EETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTC----CEEEEE----CCCSSCCCEEEEC
T ss_pred             eecccccceeeeecccc-----ccccccccccceeeecccccceEEeeecccc----cccccc----ccccccccccccc
Confidence            99999998888776665     78899999999999866 9999999999984    223333    6889999999997


Q ss_pred             cCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE-EEccCCC
Q 023672          232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV-SKLSSAY  278 (279)
Q Consensus       232 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~-~~spdg~  278 (279)
                      +   .+|++|+.||.|++||++++...  +..|...+.++ .|+++++
T Consensus       253 ~---~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         253 D---KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDN  295 (355)
T ss_dssp             S---SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSS
T ss_pred             c---ceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCC
Confidence            6   58999999999999999988754  44455555554 4556654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.4e-23  Score=155.51  Aligned_cols=208  Identities=13%  Similarity=0.187  Sum_probs=145.9

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc---------
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL---------  103 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---------  103 (279)
                      .-.+++||+.++++..      ++.+|.+.|++++|  ++++|++|+.|+.|++|++..+...........         
T Consensus        34 Dg~i~vWd~~~~~~~~------~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (293)
T d1p22a2          34 DNTIKIWDKNTLECKR------ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN  105 (293)
T ss_dssp             SSCEEEEESSSCCEEE------EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred             CCeEEEEECCCCcEEE------EEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccc
Confidence            3468899998887765      67899999999987  568999999999999999987654221110000         


Q ss_pred             ----cCCCCccc-------------ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec
Q 023672          104 ----AKDQDSYE-------------ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA  166 (279)
Q Consensus       104 ----~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~  166 (279)
                          ........             ......+...+..+.+         ....+++++.|+.|++||+++++.+..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~  176 (293)
T d1p22a2         106 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---------DDKYIVSASGDRTIKVWNTSTCEFVRTLNG  176 (293)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cceeecccccceeEeecccccccccccccccccccccccee---------cccccccccCCCceeeecCCCCcEEEEEcc
Confidence                00000000             0011122223333333         345788899999999999999999888877


Q ss_pred             cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                      +..     .+..+.++  +..++++ .|+.|++||+++.    ......    .+|...+..  +++ ++.+|++|+.||
T Consensus       177 ~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~----~~~~~~----~~~~~~v~~--~~~-~~~~l~sg~~dg  238 (293)
T d1p22a2         177 HKR-----GIACLQYR--DRLVVSGSSDNTIRLWDIECG----ACLRVL----EGHEELVRC--IRF-DNKRIVSGAYDG  238 (293)
T ss_dssp             CSS-----CEEEEEEE--TTEEEEEETTSCEEEEETTTC----CEEEEE----CCCSSCEEE--EEC-CSSEEEEEETTS
T ss_pred             ccc-----ccccccCC--CCeEEEecCCCEEEEEecccc----eeeeee----cccceeeee--ccc-cceEEEEEcCCC
Confidence            665     66666665  4577765 9999999999973    222222    456666654  556 678999999999


Q ss_pred             cEEEEecCC---------CeEEEEEeecCCCEEEEEEcc
Q 023672          246 TSAIYREDN---------MELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       246 ~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      .|++||+.+         ..++..+.+|.+.|++++|++
T Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence            999999754         346788999999999999965

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=2.3e-23  Score=159.29  Aligned_cols=162  Identities=8%  Similarity=0.169  Sum_probs=120.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...+.+++|+|++++|++|+.||.|++||+.++....                .....+...|.+++|       +|++.
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~----------------~~~~~~~~~i~~~~~-------~~~~~  192 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE----------------VKTIVHPAEITSVAF-------SNNGA  192 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE----------------EEEEECSSCEEEEEE-------CTTSS
T ss_pred             ccccccccccccccccccccccccccccccccccccc----------------ccccccccccccccc-------ccccc
Confidence            3458899999999999999999999999997653211                123456678888877       77899


Q ss_pred             EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~  218 (279)
                      +|++++.|+.|++||+.++.........  ..+...|.+++|+|++++|++| .|+.|++||++++.... .....    
T Consensus       193 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~~----  265 (299)
T d1nr0a2         193 FLVATDQSRKVIPYSVANNFELAHTNSW--TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP-IIIKG----  265 (299)
T ss_dssp             EEEEEETTSCEEEEEGGGTTEESCCCCC--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-EEETT----
T ss_pred             cccccccccccccccccccccccccccc--cccccccccccccccccceEEEcCCCEEEEEECCCCCcce-EEEec----
Confidence            9999999999999999887654333221  1122389999999999999966 99999999998743221 11111    


Q ss_pred             CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                      ..+...+.++.| + ++.+|++|+.|+.|++||+.
T Consensus       266 ~~~~~~v~~~~~-~-~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         266 AHAMSSVNSVIW-L-NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSTTSCEEEEEE-E-ETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcEEEEEE-C-CCCEEEEEeCCCEEEEEecc
Confidence            234456666655 4 45689999999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2e-23  Score=165.88  Aligned_cols=158  Identities=18%  Similarity=0.301  Sum_probs=115.2

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      ....+...+++++|+|++ +|++|+.||+|+|||+.+++.........           ....|..+|.+++|       
T Consensus       179 ~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~-----------~l~~h~~~V~~l~~-------  239 (393)
T d1sq9a_         179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH-----------SMINNSNSIRSVKF-------  239 (393)
T ss_dssp             CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--------------CCCCCEEEEEE-------
T ss_pred             cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc-----------ccccccceEEEccc-------
Confidence            455677789999999998 89999999999999999765432221111           22456778999987       


Q ss_pred             CCCCcEEEEecCCCc---EEEEECCCCeeeEEEeccCc--------cccccceeeEEECCCCCEEEEe-cCCeEEEEEcc
Q 023672          135 DPTSCVFASTTRDHP---IHLWDATTGLLRCTYRAYDA--------VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH  202 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~---i~i~d~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~  202 (279)
                      +|++++|++|+.|++   |++||+++++.+..+.....        .+|...|++++|+|++++|+++ .|++|++||++
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            778999999998875   89999999988887753211        1344489999999999999966 99999999999


Q ss_pred             CCCCceeeeeecccccCCCCCceE----EEEEccCCCcEEEE
Q 023672          203 RPGRDFEKYSTLKGNKEGQAGIMS----AIAFSPTHTGMLAI  240 (279)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~----~~~~sp~~~~~l~~  240 (279)
                      ++    +++.++    .+|...|.    .++|+| ++..+++
T Consensus       320 ~g----~~~~~l----~gH~~~v~~~~~~~~~~~-~~~~~~~  352 (393)
T d1sq9a_         320 TK----ERITTL----NMHCDDIEIEEDILAVDE-HGDSLAE  352 (393)
T ss_dssp             TT----EEEEEE----ECCGGGCSSGGGCCCBCT-TSCBCSS
T ss_pred             CC----CEEEEE----CCcCCcccCCccEEEECC-CCCEEEE
Confidence            84    444444    45554443    355666 4544443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=8.2e-23  Score=164.05  Aligned_cols=217  Identities=11%  Similarity=0.023  Sum_probs=148.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||+.+++.+.      .+..| ..+..++|+|||++|++++.|++|++||+.+++....                .
T Consensus        43 ~v~vwD~~t~~~~~------~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~----------------~   99 (426)
T d1hzua2          43 QIALVDGDSKKIVK------VIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV----------------A   99 (426)
T ss_dssp             EEEEEETTTCSEEE------EEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE----------------E
T ss_pred             EEEEEECCCCcEEE------EEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE----------------E
Confidence            67899999998876      45555 4589999999999999999999999999987643111                1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEEEEe-cCCCcEEEEECCCCeeeEEEeccCcc-----------------------
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAV-----------------------  170 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~-----------------------  170 (279)
                      ....+.....+.++   .+|+|||++++++ ..++.+++||..++.....+..+...                       
T Consensus       100 ~i~~~~~~~~~~~s---~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~  176 (426)
T d1hzua2         100 EIKIGIEARSVESS---KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  176 (426)
T ss_dssp             EEECCSEEEEEEEC---CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEeCCCCCcceEEe---eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCE
Confidence            12222223333333   3578899986544 57889999999887655443221100                       


Q ss_pred             ---------------------------ccccceeeEEECCCCCEEEE-e-cCCeEEEEEccCCCCceeee----------
Q 023672          171 ---------------------------DEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKY----------  211 (279)
Q Consensus       171 ---------------------------~~~~~v~~~~~~~~~~~l~~-~-~d~~i~~~d~~~~~~~~~~~----------  211 (279)
                                                 .....+..+.|+|+++++++ . .+..+.+++..+... ....          
T Consensus       177 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  255 (426)
T d1hzua2         177 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEE-EEEEECSSCCCCSC
T ss_pred             EEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccE-EEEeccCCcccccc
Confidence                                       11123557889999988874 4 667788888765210 0000          


Q ss_pred             -------------------------------------eecccccCCCCCceEEEEEccCCCcEEEE-------EeCCCcE
Q 023672          212 -------------------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAI-------GSYSQTS  247 (279)
Q Consensus       212 -------------------------------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~-------~~~dg~i  247 (279)
                                                           ......+.+|...+..++|+| ++.+|++       ++.|++|
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCE
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEE
Confidence                                                 011112357788899999999 8888884       5568899


Q ss_pred             EEEecCCCeEEEEEe---------ecCCCEEEEEEccCCCC
Q 023672          248 AIYREDNMELLYVLH---------GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       248 ~~wd~~~~~~~~~~~---------~~~~~v~~~~~spdg~~  279 (279)
                      +|||+.++++..++.         .|...|.+++|||||++
T Consensus       335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred             EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence            999999998765553         34557999999999983

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=2.6e-22  Score=156.97  Aligned_cols=196  Identities=13%  Similarity=0.074  Sum_probs=150.6

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCC--eEEEEeCCCCccccccccccccCCCCcccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (279)
                      .+++||+..+....        .+|.+.|.+++|+|||++|++++.+.  .|++||..++...                 
T Consensus        25 ~v~v~d~~~~~~~~--------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-----------------   79 (360)
T d1k32a3          25 QAFIQDVSGTYVLK--------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-----------------   79 (360)
T ss_dssp             EEEEECTTSSBEEE--------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-----------------
T ss_pred             eEEEEECCCCcEEE--------ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-----------------
Confidence            57889988776542        26899999999999999998766543  7999999876432                 


Q ss_pred             eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (279)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  191 (279)
                       ....+...+..++|       +|++++|++++.++.+++|++.+++....+..+..     .+.+++|+|+|++|+.+ 
T Consensus        80 -~~~~~~~~v~~~~~-------spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          80 -KFEENLGNVFAMGV-------DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             -ECCCCCCSEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEE
T ss_pred             -EeeCCCceEEeeee-------cccccccceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeec
Confidence             22345567888877       88999999999999999999999998888877765     78899999999999832 


Q ss_pred             ----------cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-----
Q 023672          192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----  256 (279)
Q Consensus       192 ----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-----  256 (279)
                                .++.+++||+.++    +.. .+    ..+...+..++|+| ++..|++++.++.+.+||.....     
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~----~~~-~~----~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~  216 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGR----KIF-AA----TTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEV  216 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTT----EEE-EC----SCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCS
T ss_pred             cccccceeeccccceeeeccccC----cee-ee----cccccccccccccC-CCCEEEEEeCCCceEcccccccceeecc
Confidence                      2346899999873    211 22    35566788999999 89999999999999999976543     


Q ss_pred             --EEEEEeecCCCEEEEEEccCCC
Q 023672          257 --LLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       257 --~~~~~~~~~~~v~~~~~spdg~  278 (279)
                        ....+..+...+..+.|+|+|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~s~~~~  240 (360)
T d1k32a3         217 VSKPFVIPLIPGSPNPTKLVPRSM  240 (360)
T ss_dssp             CBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             ccceEEEecccCccccceECCCcC
Confidence              2344455555556666777664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-21  Score=145.57  Aligned_cols=179  Identities=15%  Similarity=0.260  Sum_probs=125.1

Q ss_pred             eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .....|...|+|++|  |+++||||+.||+|+|||+.+++...                 ....|...|.++.|      
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~-----------------~l~~H~~~V~~v~~------   63 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-----------------ILTGHTGSVLCLQY------   63 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE-----------------EECCCSSCEEEEEC------
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEecCCCCEeeeec------
Confidence            356678899999765  78999999999999999998764422                 22356778988866      


Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeee
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~  212 (279)
                         ++++|++|+.|+.|++|++..+...........       ....+.+....+++ ..++.+.+||...... .....
T Consensus        64 ---~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  132 (293)
T d1p22a2          64 ---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRR  132 (293)
T ss_dssp             ---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS-------CEEEEECCTTEEEEEETTSCEEEEECSSSSC-CEEEE
T ss_pred             ---ccceeeccccccccccccccccccccccccccc-------ccccccccccceeecccccceeEeecccccc-ccccc
Confidence               567999999999999999999887766655442       23344455556664 5999999999987322 22222


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      ..    ..|...+..+.+.+   ..+++++.|+.|++||+++++++..+.++...+..+.+++
T Consensus       133 ~~----~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  188 (293)
T d1p22a2         133 VL----VGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD  188 (293)
T ss_dssp             EE----CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             cc----cccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC
Confidence            22    45556666665544   3566666777777777777777777776666666665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=3.2e-22  Score=156.46  Aligned_cols=173  Identities=12%  Similarity=0.103  Sum_probs=133.7

Q ss_pred             EEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        64 ~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      ..-.||| ||+++|+++ +|.|.+||+.++..                   ....|+..|.+++|       +|||+.|+
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~-------------------~~~~~~~~v~~~~~-------spDg~~l~   58 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-------------------LKVPEPLRIRYVRR-------GGDTKVAF   58 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-------------------EECSCCSCEEEEEE-------CSSSEEEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcE-------------------EEccCCCCEEEEEE-------CCCCCEEE
Confidence            3467999 999999887 47999999986543                   33457778999988       78999988


Q ss_pred             EecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccC
Q 023672          143 STTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (279)
Q Consensus       143 s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~  219 (279)
                      +++.+.  .|++||+++++... +..+..     .+.+++|+|++++|+++ .++.+++|++.++ .   ....+    .
T Consensus        59 ~~~~~~g~~v~v~d~~~~~~~~-~~~~~~-----~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~---~~~~~----~  124 (360)
T d1k32a3          59 IHGTREGDFLGIYDYRTGKAEK-FEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETG-K---PTVIE----R  124 (360)
T ss_dssp             EEEETTEEEEEEEETTTCCEEE-CCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTTC-C---EEEEE----E
T ss_pred             EEEcCCCCEEEEEECCCCcEEE-eeCCCc-----eEEeeeecccccccceecccccccccccccc-c---eeeee----e
Confidence            776553  79999999887654 444443     88999999999999965 9999999999874 2   22222    4


Q ss_pred             CCCCceEEEEEccCCCcEEEEEe----------CCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGS----------YSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      .|...+.+++|+| ++.+|+.+.          .++.+++||+.+++... +..+...+..++|+|||++
T Consensus       125 ~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         125 SREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKN  192 (360)
T ss_dssp             CSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCE
T ss_pred             cccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCE
Confidence            6677888999999 888887543          34569999999887654 3446778899999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-21  Score=149.94  Aligned_cols=163  Identities=18%  Similarity=0.250  Sum_probs=120.3

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .+.+|...+.++.  +++.+|++|+.||.|++||++.+....                 ....+...+.++.+       
T Consensus       172 ~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~-----------------~~~~~~~~v~~~~~-------  225 (342)
T d2ovrb2         172 TLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIH-----------------TLTGHQSLTSGMEL-------  225 (342)
T ss_dssp             EECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCCSCEEEEEE-------
T ss_pred             EEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeee-----------------EecccccceeEEec-------
Confidence            5667777666554  467899999999999999998754321                 22344556777665       


Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                        ++++|++++.|+.|++||+...+....+..+..  +...+.++.++  +++++++ .||.|++||++++ +....+..
T Consensus       226 --~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~  298 (342)
T d2ovrb2         226 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK--HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG-EFIRNLVT  298 (342)
T ss_dssp             --ETTEEEEEETTSCEEEEETTTCCEEEEECSTTS--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC-CEEEEEEE
T ss_pred             --CCCEEEEEcCCCEEEEEecccccccccccccce--eeeceeecccC--CCeeEEEcCCCEEEEEECCCC-CEEEEEec
Confidence              445999999999999999999888777765432  22255666665  4577755 9999999999984 33332222


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCc----EEEEecC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT----SAIYRED  253 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~----i~~wd~~  253 (279)
                      .  ...+|...|++++|+| ++.+|++|+.||+    |++||+.
T Consensus       299 ~--~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         299 L--ESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             C--TTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             c--cCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            1  2246788999999999 8999999999985    9999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.1e-21  Score=145.28  Aligned_cols=151  Identities=13%  Similarity=0.217  Sum_probs=113.0

Q ss_pred             EEEEccCCCeEEEeeCCC-eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672           65 GIKWSPDGSSFLTSSEDK-TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (279)
Q Consensus        65 ~~~~~~~~~~l~t~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s  143 (279)
                      +.+++++++.+++++.|+ .+++|++.......                .....+...+.+++|       +|++.+|++
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~-------s~~~~~l~~  179 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF----------------DLKTPLRAKPSYISI-------SPSETYIAA  179 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEE----------------ECSSCCSSCEEEEEE-------CTTSSEEEE
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceee----------------eeeeccCCceeEEEe-------ccCcccccc
Confidence            345677778888777764 78999987432211                122234557888877       778999999


Q ss_pred             ecCCCcEEEEECCCCeeeEE-EeccCccccccceeeEEECCCC----------CEEEEe-cCCeEEEEEccCCCCceeee
Q 023672          144 TTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTG----------TKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       144 ~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                      |+.||.|++||+.+++.... +..|..     .|.+++|+|.+          .++++| .|+.|++||++++...   .
T Consensus       180 g~~dg~i~i~d~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---~  251 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKTSRWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---I  251 (287)
T ss_dssp             EETTSCEEEEETTTTEEEECCSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC---E
T ss_pred             ccccccccceeeccccccccccccccc-----ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---E
Confidence            99999999999998876543 344444     89999998754          577766 9999999999874322   2


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      ..+    .+|...|++++|+| ++ .|++++.|+.|++||+
T Consensus       252 ~~~----~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         252 KAL----NAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EET----TSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             EEe----CCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence            222    68999999999999 66 5888999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=4.9e-18  Score=129.13  Aligned_cols=221  Identities=16%  Similarity=0.152  Sum_probs=144.8

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCcccccccccc----ccCCCCc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACS----LAKDQDS  109 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~  109 (279)
                      .+.+||+.+++.....      . ..+.+..++|+|||++|+ +++.++.|.+||+.+++.........    .....+.
T Consensus        13 ~v~v~D~~t~~~~~~i------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~   85 (301)
T d1l0qa2          13 NISVIDVTSNKVTATI------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG   85 (301)
T ss_dssp             EEEEEETTTTEEEEEE------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             EEEEEECCCCeEEEEE------E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc
Confidence            4788999999876532      2 224578999999999875 66789999999999876533221110    0000000


Q ss_pred             c-----------cceeeecCCCceEEEEe--eCcccccCCCCcEEE-EecCCCcEEEEECCCCeeeEEEeccCccccccc
Q 023672          110 Y-----------EASLVVTEGESVYDFCW--FPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITA  175 (279)
Q Consensus       110 ~-----------~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~l~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  175 (279)
                      .           ........+..+..+..  .+..+.++|++..++ ++..++.+.+|+..++.....+....      .
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  159 (301)
T d1l0qa2          86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------S  159 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------S
T ss_pred             ccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC------C
Confidence            0           00001111111111111  123456788888764 55668889999999998888877655      5


Q ss_pred             eeeEEECCCCCEEEE-e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe---CCCcEEEE
Q 023672          176 AFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIY  250 (279)
Q Consensus       176 v~~~~~~~~~~~l~~-~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~---~dg~i~~w  250 (279)
                      +..+.++|++..+++ + .++.+.+|+....    ......     .....+..+++++ ++..++.++   .++.|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTV-----KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEE-----ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEE
T ss_pred             ceEEEeeccccceeeecccccccccccccce----eeeecc-----cccCCcceeeccc-cccccccccccceeeeeeee
Confidence            778999999988874 4 5577778887752    222222     2234577899999 666665543   34679999


Q ss_pred             ecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672          251 REDNMELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      |+.+++.+..+..+ ..+.+++|+|||++
T Consensus       230 D~~t~~~~~~~~~~-~~~~~va~spdg~~  257 (301)
T d1l0qa2         230 DTGTNKITARIPVG-PDPAGIAVTPDGKK  257 (301)
T ss_dssp             ETTTTEEEEEEECC-SSEEEEEECTTSSE
T ss_pred             ecCCCeEEEEEcCC-CCEEEEEEeCCCCE
Confidence            99999998888754 56899999999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=8.8e-19  Score=135.35  Aligned_cols=225  Identities=14%  Similarity=0.031  Sum_probs=140.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccc----------
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSL----------  103 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~----------  103 (279)
                      .+.+||+.+++.....    ....+...+.+++|+|||++++ +++.++.|.+||+.+++..........          
T Consensus        12 ~v~v~D~~s~~~~~~i----~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v   87 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVI----TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             EEEEEETTTTEEEEEE----ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             EEEEEECCCCeEEEEE----ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeE
Confidence            5789999998876521    1223445678999999999874 667899999999998876432211100          


Q ss_pred             -cCCCCcccce---------------------eeecCCCceEEEE--eeCcccccCCCCcEEEEecCCCcEEEEECCCCe
Q 023672          104 -AKDQDSYEAS---------------------LVVTEGESVYDFC--WFPHMSASDPTSCVFASTTRDHPIHLWDATTGL  159 (279)
Q Consensus       104 -~~~~~~~~~~---------------------~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~  159 (279)
                       ..........                     ........+..+.  -.|..++++|++.++++++.  .+.+||..+++
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~  165 (337)
T d1pbyb_          88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT  165 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTE
T ss_pred             EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCc
Confidence             0000000000                     0000011111111  12446788999999998864  46779988877


Q ss_pred             eeEEEeccCcc-------------------------------------------------------------ccccceee
Q 023672          160 LRCTYRAYDAV-------------------------------------------------------------DEITAAFS  178 (279)
Q Consensus       160 ~~~~~~~~~~~-------------------------------------------------------------~~~~~v~~  178 (279)
                      ....+..+...                                                             .....+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (337)
T d1pbyb_         166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS  245 (337)
T ss_dssp             EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE
Confidence            66554322110                                                             01113445


Q ss_pred             EEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE
Q 023672          179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (279)
Q Consensus       179 ~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~  258 (279)
                      +.++|++.++++ .++.+++||+.+.    +....+     .+...+.+++|+| +|.+|++++.|+.|++||..+++.+
T Consensus       246 ~~~~~~~~~~~~-~~~~i~v~d~~~~----~~~~~~-----~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         246 TAVNPAKTRAFG-AYNVLESFDLEKN----ASIKRV-----PLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEECTTSSEEEE-EESEEEEEETTTT----EEEEEE-----ECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             EEecccceEEEE-ccccEEEEECCCC----cEEEEE-----cCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            566777766654 3588999999984    333333     2345688999999 8999999999999999999999999


Q ss_pred             EEEeecCC----CEEEEEEccC
Q 023672          259 YVLHGQEG----GVTHVSKLSS  276 (279)
Q Consensus       259 ~~~~~~~~----~v~~~~~spd  276 (279)
                      .+++.+..    -..-..|++|
T Consensus       315 ~~i~~~g~~~~~~~~~~~~~~~  336 (337)
T d1pbyb_         315 GQVDLPGNASMSLASVRLFTRD  336 (337)
T ss_dssp             EEEECGGGCCCBTCCCEEEECC
T ss_pred             EEEECCCCCccceeeeeEEcCC
Confidence            88875432    2233446665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=7e-18  Score=135.11  Aligned_cols=194  Identities=6%  Similarity=-0.040  Sum_probs=138.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (279)
                      .+.+||..+++.+.      .+..| ..+..++|+|||++|++++.|++|++||+.++.....                .
T Consensus        43 ~v~v~D~~t~~v~~------~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~----------------~   99 (432)
T d1qksa2          43 QIALIDGSTYEIKT------VLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV----------------A   99 (432)
T ss_dssp             EEEEEETTTCCEEE------EEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE----------------E
T ss_pred             EEEEEECCCCcEEE------EEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE----------------E
Confidence            57899999999876      44445 3599999999999999999999999999987542110                1


Q ss_pred             eecCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEECCCCeeeEEEeccCcc------ccccceeeEEECCCCCE
Q 023672          115 VVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAV------DEITAAFSVAFNPTGTK  187 (279)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~  187 (279)
                      ....+..-..+.++|   +|+|||++| ++++.++.|++||..+++.+..+..+...      ........+.++|++..
T Consensus       100 ~i~~~~~~~~~~~s~---~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         100 EIKIGSEARSIETSK---MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             EEECCSEEEEEEECC---STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             EEecCCCCCCeEEec---ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence            122223334444544   579999976 67888999999999999988887654321      12224567899999988


Q ss_pred             EE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCeEEEEEe
Q 023672          188 IF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       188 l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~  262 (279)
                      ++ +. .++.|.+||..+. .... ...+     .+...+..++|+| ++.++++++ .++.+.++|..+++.+..+.
T Consensus       177 ~~vs~~~~~~i~~~d~~~~-~~~~-~~~i-----~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDL-NNLK-TTEI-----SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEETTTTEEEEEETTCS-SEEE-EEEE-----ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEccCCeEEEEEccCC-Ccce-EEEE-----cccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEec
Confidence            76 44 7899999998763 2221 1222     2344678999999 777665555 45679999998887766554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=7.3e-19  Score=140.87  Aligned_cols=185  Identities=10%  Similarity=-0.063  Sum_probs=127.2

Q ss_pred             ccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCC
Q 023672           69 SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH  148 (279)
Q Consensus        69 ~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~  148 (279)
                      +++.-++++.+.||+|.|||..+++....                +  ..+..+..++|       +|||+++++++.|+
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~----------------~--~~g~~~~~v~f-------SpDG~~l~~~s~dg   83 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTV----------------L--DTGYAVHISRL-------SASGRYLFVIGRDG   83 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEE----------------E--ECSSCEEEEEE-------CTTSCEEEEEETTS
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEE----------------E--eCCCCeeEEEE-------CCCCCEEEEEcCCC
Confidence            33333468999999999999998765321                2  22345666655       89999999999999


Q ss_pred             cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeee----cccccCCCC
Q 023672          149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST----LKGNKEGQA  222 (279)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~  222 (279)
                      +|++||+.+++............+...+.+..|+|||++++ ++ .++.|++||..++ ........    .......+.
T Consensus        84 ~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2          84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESC
T ss_pred             CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCC
Confidence            99999999876443332222222223566777889999876 55 8999999999874 33222111    000112345


Q ss_pred             CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCCC
Q 023672          223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       223 ~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~~  279 (279)
                      .....+.++|++..++++...++.|.+||..+++...... .+...+.+++|+|||+|
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~  220 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  220 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCE
Confidence            5677899999544566777888999999998887654433 24567899999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.2e-19  Score=135.93  Aligned_cols=207  Identities=7%  Similarity=-0.005  Sum_probs=119.3

Q ss_pred             eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCC-----
Q 023672           33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD-----  106 (279)
Q Consensus        33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----  106 (279)
                      .-.+++||+........   .....+|.+.|.+++|+|++ .+|++|+.||.|++|++.................     
T Consensus        32 Dg~v~iwd~~~~~~~~~---~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  108 (342)
T d1yfqa_          32 DGSLTVYKFDIQAKNVD---LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRIC  108 (342)
T ss_dssp             TSEEEEEEEETTTTEEE---EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred             CCeEEEEEccCCCcceE---EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccc
Confidence            34678888876554321   11334699999999999864 5889999999999999986644211110000000     


Q ss_pred             CCcccceeeecCCCceEE-----------EEe---------eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEE--
Q 023672          107 QDSYEASLVVTEGESVYD-----------FCW---------FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY--  164 (279)
Q Consensus       107 ~~~~~~~~~~~~~~~v~~-----------~~~---------~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~--  164 (279)
                      .......+.......+..           ...         ......+.+.+..+++++.|+.|++||+.........  
T Consensus       109 ~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  188 (342)
T d1yfqa_         109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE  188 (342)
T ss_dssp             EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred             ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee
Confidence            000000000000000000           000         0001123445667777777888888877543211000  


Q ss_pred             --------------------------------------------------ec----cCccccccceeeEEECCCCCEEEE
Q 023672          165 --------------------------------------------------RA----YDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       165 --------------------------------------------------~~----~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                                                                        ..    .....+...+.+++|+|++.+|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~las  268 (342)
T d1yfqa_         189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEE
Confidence                                                              00    000122235779999999999996


Q ss_pred             e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (279)
Q Consensus       191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~  252 (279)
                      | .||.|++||+++.    +.+..+    .. ...+..++|+| ++.+|++++.|+.+++|..
T Consensus       269 g~~Dg~v~vWD~~~~----~~l~~~----~~-~~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         269 AGSDGIISCWNLQTR----KKIKNF----AK-FNEDSVVKIAC-SDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EETTSCEEEEETTTT----EEEEEC----CC-CSSSEEEEEEE-CSSEEEEEEECTHHHHCSS
T ss_pred             ECCCCEEEEEECCCC----cEEEEe----cC-CCCCEEEEEEe-CCCEEEEEEcCCcEEEeee
Confidence            6 9999999999984    333333    11 23455678888 8889999999998888865

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=7.1e-18  Score=130.65  Aligned_cols=82  Identities=15%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~  254 (279)
                      .+..+.+++++.+++...++.|.+||..++    +....+     .+...+.+++|+| ++.+|++++.|+.|++||+.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----~~~~~~-----~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         253 LYFTGLRSPKDPNQIYGVLNRLAKYDLKQR----KLIKAA-----NLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CEEEEEECSSCTTEEEEEESEEEEEETTTT----EEEEEE-----ECSSCCCEEEECS-SSSCEEEESBSSEEEEEETTT
T ss_pred             eeEEEEEeCCCCEEEEecCCeEEEEECCCC----cEEEEE-----cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECcc
Confidence            344566777777776665678999999873    222222     2234688999999 899999999999999999999


Q ss_pred             CeEEEEEeecCC
Q 023672          255 MELLYVLHGQEG  266 (279)
Q Consensus       255 ~~~~~~~~~~~~  266 (279)
                      ++.+.+++.+.+
T Consensus       323 ~~~i~~i~~p~g  334 (346)
T d1jmxb_         323 LEKVKNIKLPGG  334 (346)
T ss_dssp             TEEEEEEECSSS
T ss_pred             CCEEEEEECCCC
Confidence            999999986554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=1.6e-16  Score=126.98  Aligned_cols=180  Identities=11%  Similarity=-0.038  Sum_probs=118.4

Q ss_pred             eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEE
Q 023672           74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW  153 (279)
Q Consensus        74 ~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~  153 (279)
                      ++++.+.||+|+|||+.+++....                  +..+..+..++|       +|||+++++++.|++|++|
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~------------------l~~g~~~~~vaf-------SPDGk~l~~~~~d~~v~vw   88 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKV------------------IDTGYAVHISRM-------SASGRYLLVIGRDARIDMI   88 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEE------------------EECCSSEEEEEE-------CTTSCEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE------------------EeCCCCeeEEEE-------CCCCCEEEEEeCCCCEEEE
Confidence            567888999999999998754321                  222345666654       8999999999999999999


Q ss_pred             ECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecc----cccCCCCCceEE
Q 023672          154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK----GNKEGQAGIMSA  227 (279)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~v~~  227 (279)
                      |+.+++...........++...+.+++|+|||++++ ++ .++.+++||..+. ..........    .....+......
T Consensus        89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             ETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             EccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeE
Confidence            999987655444332223333567888899999887 44 8999999999884 2222211100    000123344566


Q ss_pred             EEEccCCCcEEEEEeCCCcEEEEecCCCeEE-EEEeecCCCEEEEEEccCCCC
Q 023672          228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELL-YVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       228 ~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~spdg~~  279 (279)
                      +.+++++..++.+....+.+.+++......+ .....+...+.+++|+|+|++
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY  220 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcE
Confidence            7777733333444445566777776665433 234457778999999999974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.9e-16  Score=120.20  Aligned_cols=217  Identities=8%  Similarity=0.057  Sum_probs=131.5

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (279)
                      .+.+|++.....+...    ....|.+.|.+|+|+|||++|++++ .|+.|.+|++.........              .
T Consensus        15 ~I~v~~~~~~~~l~~~----~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~--------------~   76 (333)
T d1ri6a_          15 QIHVWNLNHEGALTLT----QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--------------A   76 (333)
T ss_dssp             EEEEEEECTTSCEEEE----EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--------------E
T ss_pred             cEEEEEEcCCCCeEEE----EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--------------e
Confidence            5677887654433211    2234778899999999999986554 5899999999754221100              0


Q ss_pred             eeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-e
Q 023672          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G  191 (279)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~  191 (279)
                      ......       ..|..++++|+|++|++++. ++.|.+|+...............   ...+.++.++|++++++. +
T Consensus        77 ~~~~~~-------~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~v~~s~d~~~~~~~~  146 (333)
T d1ri6a_          77 AESALP-------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPA  146 (333)
T ss_dssp             EEEECS-------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEE
T ss_pred             eecccC-------CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC---CccceEEEeeecceeeeccc
Confidence            111122       23344566999999988875 66899999877665444332221   115678889999988774 4


Q ss_pred             -cCCeEEEEEccCCCCceeee-------------------------------------------------eeccc--ccC
Q 023672          192 -YNKSVRVFDVHRPGRDFEKY-------------------------------------------------STLKG--NKE  219 (279)
Q Consensus       192 -~d~~i~~~d~~~~~~~~~~~-------------------------------------------------~~~~~--~~~  219 (279)
                       .+..+.+|+...........                                                 .....  ...
T Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  226 (333)
T d1ri6a_         147 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  226 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             cccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCC
Confidence             66778888876532111000                                                 00000  000


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE---EeecCCCEEEEEEccCCCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV---LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~v~~~~~spdg~~  279 (279)
                      ........+++++++..+++++..++.+.+|++........   .......+++++|+|||++
T Consensus       227 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~  289 (333)
T d1ri6a_         227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY  289 (333)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred             CccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCE
Confidence            11234566788994334555666778899999875543222   2234456789999999985

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.2e-16  Score=124.41  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             CceEEEEEccCCCc--EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          223 GIMSAIAFSPTHTG--MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       223 ~~v~~~~~sp~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      ..+.+++|+| +++  ++++++.|+.|++||+.+++.+.++..+......+.+.++|
T Consensus       300 ~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         300 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            3578999999 665  45677889999999999999999998776666777777665

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=1.1e-15  Score=119.76  Aligned_cols=225  Identities=12%  Similarity=0.004  Sum_probs=133.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccc--
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACS--  102 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~--  102 (279)
                      .+++||..+++.+.      .+.++..  ..++|+|||++|++++          .++.|.+||..+++.........  
T Consensus        48 ~v~v~D~~tg~~~~------~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~  119 (373)
T d2madh_          48 QQWVLDAGSGSILG------HVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP  119 (373)
T ss_pred             eEEEEECCCCCEEE------EEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc
Confidence            57889999988776      3333433  3699999999998874          46789999999887643221110  


Q ss_pred             -----------ccCCCCcccceeee----------cCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEECCCCee
Q 023672          103 -----------LAKDQDSYEASLVV----------TEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLL  160 (279)
Q Consensus       103 -----------~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d~~~~~~  160 (279)
                                 ......+.......          .....+....-.|.++.++|++..+ ++.+.|+.+.+|+...+..
T Consensus       120 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             eeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence                       00001111000000          0111111111223455677887654 6778899999999877655


Q ss_pred             eEEEeccCccc-c-----------------------------------------------------ccceeeEEECCCCC
Q 023672          161 RCTYRAYDAVD-E-----------------------------------------------------ITAAFSVAFNPTGT  186 (279)
Q Consensus       161 ~~~~~~~~~~~-~-----------------------------------------------------~~~v~~~~~~~~~~  186 (279)
                      ........... .                                                     ......+++++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  279 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence            44322111000 0                                                     00112234444444


Q ss_pred             EEE----------Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc--EEEEEeCCCcEEEEecC
Q 023672          187 KIF----------AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLAIGSYSQTSAIYRED  253 (279)
Q Consensus       187 ~l~----------~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--~l~~~~~dg~i~~wd~~  253 (279)
                      .++          .. .++.+.+||..++ +   ....+     .+...+..++|+| +|+  ++++++.|+.|++||+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-~---~~~~~-----~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVG-Q---TSSQI-----SLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             eEEEecCCCceEEeecCCCeEEEEECCCC-c---EEEEe-----cCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence            332          11 3456677777663 1   22222     3445688999999 766  45688999999999999


Q ss_pred             CCeEEEEEeecCCCEEEEEEccCC
Q 023672          254 NMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       254 ~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                      +++.+.++..+....+.|++.+++
T Consensus       350 tg~~~~~~~~~g~~P~~l~~~~~~  373 (373)
T d2madh_         350 AGDQDQSTVELGSGPQVLSVMNEA  373 (373)
T ss_pred             CCCEEEEECCCCCCCcEEEEecCC
Confidence            999999999887778888887653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=1.4e-15  Score=115.31  Aligned_cols=162  Identities=12%  Similarity=0.202  Sum_probs=121.3

Q ss_pred             EEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEE
Q 023672           76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWD  154 (279)
Q Consensus        76 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d  154 (279)
                      ++++.|++|.|||+.+++....                  ...+.....+       +++|+|++| ++++.++.|++||
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~------------------i~~g~~p~~v-------a~spdG~~l~v~~~~~~~i~v~d   60 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTAT------------------IPVGSNPMGA-------VISPDGTKVYVANAHSNDVSIID   60 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE------------------EECSSSEEEE-------EECTTSSEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEE------------------EECCCCceEE-------EEeCCCCEEEEEECCCCEEEEEE
Confidence            4667899999999998754321                  1122233444       558899977 5677899999999


Q ss_pred             CCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672          155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (279)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (279)
                      +.+++.+..+..+.      .+..+.|++++..++ ++ .++.+.+|+..++    +....+     .+...+.+++|+|
T Consensus        61 ~~t~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~  125 (301)
T d1l0qa2          61 TATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----TVAGTV-----KTGKSPLGLALSP  125 (301)
T ss_dssp             TTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEE-----ECSSSEEEEEECT
T ss_pred             CCCCceeeeeeccc------cccccccccccccccccccccceeeecccccc----eeeeec-----cccccceEEEeec
Confidence            99999998887665      567899999998777 55 7889999999873    222232     2334578899999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       233 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      ++..+++++..++.+.+|+..++..+..+..+ ..+..++++|+++
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  170 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT  170 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS
T ss_pred             CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeecccc
Confidence            44445566777888999999999988888754 4578899999985

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=2e-16  Score=122.39  Aligned_cols=115  Identities=11%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE-EEe
Q 023672           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AST  144 (279)
Q Consensus        66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~  144 (279)
                      ++|++++++|++++.|++|.+||+.+++....                +...++.....+       +++|||+++ +++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t----------------~~~~~~~~p~~l-------~~spDG~~l~v~~   58 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS----------------CVMPDKFGPGTA-------MMAPDNRTAYVLN   58 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE----------------EECSSCCSSCEE-------EECTTSSEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEE----------------EEcCCCCCcceE-------EECCCCCEEEEEE
Confidence            57899999999999999999999997654221                222333333344       558899887 556


Q ss_pred             cCCCcEEEEECCCCeeeEEEeccCccc-cccceeeEEECCCCCEEEEe-------------cCCeEEEEEccC
Q 023672          145 TRDHPIHLWDATTGLLRCTYRAYDAVD-EITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHR  203 (279)
Q Consensus       145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-------------~d~~i~~~d~~~  203 (279)
                      ..++.|.+||+.+++.+..+....... ....+..++|+|||++++++             .+..+.+||..+
T Consensus        59 ~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~  131 (346)
T d1jmxb_          59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  131 (346)
T ss_dssp             TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             CCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence            678999999999999887776543211 11245688999999887643             245667776654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=5.6e-16  Score=119.33  Aligned_cols=158  Identities=11%  Similarity=0.120  Sum_probs=114.2

Q ss_pred             CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec-CCCceEEEEeeCcccccCCCCcEE-EEecCCCcE
Q 023672           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPI  150 (279)
Q Consensus        73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i  150 (279)
                      ++|++++.|++|.|||+.+++....                +... ++..+..+       +++|||+++ ++++.++.|
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~----------------i~~~~~~~~~~~i-------~~spDg~~l~v~~~~~~~v   58 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKV----------------ITIADAGPTPMVP-------MVAPGGRIAYATVNKSESL   58 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE----------------EECTTCTTCCCCE-------EECTTSSEEEEEETTTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEE----------------EECCCCCCCccEE-------EECCCCCEEEEEECCCCeE
Confidence            4799999999999999997654321                1111 22233334       558999987 566789999


Q ss_pred             EEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c------------CCeEEEEEccCCCCceeeeeecccc
Q 023672          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y------------NKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------------d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      .+||+.+++.+..+..+........+..++|+|+++.++++ .            +..+.+||..+.    .....+   
T Consensus        59 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~---  131 (337)
T d1pbyb_          59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAF---  131 (337)
T ss_dssp             EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEE---
T ss_pred             EEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC----eEEEec---
Confidence            99999999998888766543333356789999999988744 2            467888998873    222232   


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                        .+...+..++|+| ++.++++++.  .+.+||..+++....+..+.
T Consensus       132 --~~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~  174 (337)
T d1pbyb_         132 --EAPRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             --ECCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTT
T ss_pred             --cccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCC
Confidence              2234577899999 8888888864  47789999999888876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=3.7e-14  Score=110.90  Aligned_cols=204  Identities=10%  Similarity=-0.076  Sum_probs=123.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA  104 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  104 (279)
                      .++++|..+++.+.      ...++..  ..++|+|||+.|++++          .|+.|.+||..+++......     
T Consensus        47 ~~~~~d~~~~~~~~------~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-----  113 (368)
T d1mdah_          47 ENWVSCAGCGVTLG------HSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-----  113 (368)
T ss_dssp             EEEEEETTTTEEEE------EEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-----
T ss_pred             eEEEEeCCCCcEEE------EEeCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-----
Confidence            56778888888765      2333333  3589999999888654          47889999999875432211     


Q ss_pred             CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCCCeeeEEEeccCccc------------
Q 023672          105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVD------------  171 (279)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~------------  171 (279)
                                 . +..........|..++|+|||++++++. .++.+.+||+.+++....+..+....            
T Consensus       114 -----------~-p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  181 (368)
T d1mdah_         114 -----------L-PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLG  181 (368)
T ss_dssp             -----------E-TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECC
T ss_pred             -----------C-CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEE
Confidence                       1 1111111222344566788888887775 46888889888877655543321100            


Q ss_pred             --------------------------------------------------------------------------------
Q 023672          172 --------------------------------------------------------------------------------  171 (279)
Q Consensus       172 --------------------------------------------------------------------------------  171 (279)
                                                                                                      
T Consensus       182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (368)
T d1mdah_         182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred             cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeee
Confidence                                                                                            


Q ss_pred             cccceeeEEECCCCCEEEEe--cC--------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc--EEE
Q 023672          172 EITAAFSVAFNPTGTKIFAG--YN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLA  239 (279)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~--~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--~l~  239 (279)
                      .......++++|++..++..  .+        ..|.+||..++ +   ....+     .+...+.+++|+| +++  +++
T Consensus       262 ~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~---~~~~~-----~~~~~~~~~a~sp-DG~~~ly~  331 (368)
T d1mdah_         262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-Q---TSGPI-----SNGHDSDAIIAAQ-DGASDNYA  331 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-C---EEECC-----EEEEEECEEEECC-SSSCEEEE
T ss_pred             cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC-c---EeEEe-----cCCCceeEEEECC-CCCEEEEE
Confidence            00011234455555444421  11        23666776663 1   12222     1234678899999 664  456


Q ss_pred             EEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       240 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                      ++..++.|++||..+++.+.+++.... ...|++-
T Consensus       332 s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~~  365 (368)
T d1mdah_         332 NSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ  365 (368)
T ss_dssp             EETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred             EeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEEe
Confidence            777899999999999999999885443 4556553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8.4e-14  Score=106.91  Aligned_cols=175  Identities=13%  Similarity=0.114  Sum_probs=111.9

Q ss_pred             eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe-cCCCcEEE
Q 023672           74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST-TRDHPIHL  152 (279)
Q Consensus        74 ~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~i  152 (279)
                      .+++++.|++|++|+++......               ......+++.+..++|       +|||++|+++ ..|+.|.+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~---------------~~~~~~~~~~v~~la~-------spDG~~L~v~~~~d~~i~~   63 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALT---------------LTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLA   63 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEE---------------EEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeE---------------EEEEEcCCCCEeEEEE-------eCCCCEEEEEECCCCeEEE
Confidence            35677899999999997532110               0112344455666654       8899988555 55899999


Q ss_pred             EECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (279)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (279)
                      |++........+..+..  ....+..++|+|+|++++++  .++.+.+|+.... ...... ..    ..+...+.++.+
T Consensus        64 ~~i~~~~~~~~~~~~~~--~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~-~~~~~~-~~----~~~~~~~~~v~~  135 (333)
T d1ri6a_          64 YRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVV-DV----VEGLDGCHSANI  135 (333)
T ss_dssp             EEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEE-EE----ECCCTTBCCCEE
T ss_pred             EEEeCCCCcEEEeeecc--cCCCceEEEEcCCCCEEeecccCCCceeeeccccc-cceecc-cc----cCCCccceEEEe
Confidence            99987644333322211  01156789999999999854  6789999998763 211111 11    344566788999


Q ss_pred             ccCCCcEEEEEe-CCCcEEEEecCCCeEEEE------EeecCCCEEEEEEccCCCC
Q 023672          231 SPTHTGMLAIGS-YSQTSAIYREDNMELLYV------LHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       231 sp~~~~~l~~~~-~dg~i~~wd~~~~~~~~~------~~~~~~~v~~~~~spdg~~  279 (279)
                      +| ++..++.++ .+..|.+|+.........      .......+..++|++++.+
T Consensus       136 s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         136 SP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             CT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            99 676666655 556699999876532211      1123346788999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.43  E-value=2.3e-11  Score=94.68  Aligned_cols=169  Identities=11%  Similarity=-0.000  Sum_probs=116.1

Q ss_pred             cCCCCCceEEEEEccCCCeEEEe-----eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           56 SSIPNNFLKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        56 ~~~h~~~v~~~~~~~~~~~l~t~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      ..++.+++.+++++|||+.+++.     +.++.|.+||..+++....                +   ..+....      
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~----------------~---~~~~~~~------   70 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH----------------V---NGGFLPN------   70 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE----------------E---eCCCCcc------
Confidence            44678889999999999988754     2346799999887654321                1   1111112      


Q ss_pred             ccccCCCCcEEEEec----------CCCcEEEEECCCCeeeEEEeccCcccc--ccceeeEEECCCCCEEEE-e--cCCe
Q 023672          131 MSASDPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVAFNPTGTKIFA-G--YNKS  195 (279)
Q Consensus       131 ~~~~~~~~~~l~s~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~--~d~~  195 (279)
                       ++|+|||++|++++          .++.|.+||+.+++.+..+..+.....  ......+.|+++++.++. .  .++.
T Consensus        71 -~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          71 -PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             -EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence             35589999998874          457899999999998887765543110  112346788999887663 2  4678


Q ss_pred             EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (279)
Q Consensus       196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  262 (279)
                      +.+|+....    +..        .+.....++.++|++...+++.+.|+.+.+||..+++......
T Consensus       150 ~~~~~~~~~----~~~--------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         150 VGLVVQGGS----SDD--------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             eEEeeccCC----eEE--------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            888888763    111        2223466889999555566788999999999998887665543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=6e-12  Score=98.69  Aligned_cols=137  Identities=8%  Similarity=-0.031  Sum_probs=88.0

Q ss_pred             cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc----
Q 023672          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD----  207 (279)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~----  207 (279)
                      +.++|+++..+ .++.+.+++....+.+..++...      ....+.++|||++++ ++ .+++|.+||+.+-...    
T Consensus       225 ~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgk------sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~  297 (441)
T d1qnia2         225 AVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPK------NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK  297 (441)
T ss_dssp             HHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBS------SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred             EecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCC------CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence            34444444332 24556666666666666666654      567899999999987 56 8999999998752100    


Q ss_pred             eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC----------CeEEEEE-----eecCCCEEEEE
Q 023672          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----------MELLYVL-----HGQEGGVTHVS  272 (279)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~-----~~~~~~v~~~~  272 (279)
                      ......+... ....-.....+|++ ++..+.+...|..|..|++..          ...+..+     .+|...+.+.+
T Consensus       298 ~~~~~~~~~~-~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t  375 (441)
T d1qnia2         298 IELRDTIVAE-PELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES  375 (441)
T ss_dssp             SCGGGGEEEC-CBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             CCcceEEEee-cccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc
Confidence            0000111111 01112345568999 898899999999999999742          1234455     57777777888


Q ss_pred             EccCCCC
Q 023672          273 KLSSAYT  279 (279)
Q Consensus       273 ~spdg~~  279 (279)
                      ++|||+|
T Consensus       376 ~~pdGk~  382 (441)
T d1qnia2         376 RDADGKW  382 (441)
T ss_dssp             TTCCCCE
T ss_pred             cCCCCcE
Confidence            9999986

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=1.5e-11  Score=99.09  Aligned_cols=132  Identities=12%  Similarity=0.044  Sum_probs=97.0

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c---------CCeEEEEEccCC
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y---------NKSVRVFDVHRP  204 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---------d~~i~~~d~~~~  204 (279)
                      .+++.++..  .++.|.+||+.+++....+..+.-......|.++.|+|||++|+.+ .         ++.+.+||+.++
T Consensus        25 ~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          25 ISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             CSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC
Confidence            667877764  4778999999999887766655433444478999999999998843 2         467899999973


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec------------------CC
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------------EG  266 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------------------~~  266 (279)
                           ....+    ..+...+..+.||| +|..+|... ++.+++|+..+++.......+                  .+
T Consensus       103 -----~~~~l----~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1         103 -----QLITE----ERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             -----EECCS----SCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             -----ccccc----ccCCcccccccccc-CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence                 12223    56778899999999 888888864 678999999988765443221                  12


Q ss_pred             CEEEEEEccCCCC
Q 023672          267 GVTHVSKLSSAYT  279 (279)
Q Consensus       267 ~v~~~~~spdg~~  279 (279)
                      ....+.|||||++
T Consensus       172 ~~~~~~wSPDGk~  184 (470)
T d2bgra1         172 AYSALWWSPNGTF  184 (470)
T ss_dssp             SSBCEEECTTSSE
T ss_pred             CccccEECCCCCc
Confidence            3456889999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=5.1e-11  Score=95.85  Aligned_cols=157  Identities=16%  Similarity=0.202  Sum_probs=102.1

Q ss_pred             EEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (279)
Q Consensus        65 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~  144 (279)
                      .+.|.++++++..  .|+.+.+||+.+++.........            ...+...|.++.|       |||+++|+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~~~i~~~~~-------SpDg~~i~~~   79 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENST------------FDEFGHSINDYSI-------SPDGQFILLE   79 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTT------------TTTSSSCCCEEEE-------CTTSSEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhh------------hhhccCccceeEE-------CCCCCEEEEE
Confidence            4779999987764  47889999999876532111111            1123345666655       8899999987


Q ss_pred             cC---------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecc
Q 023672          145 TR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       145 ~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      +.         ++.+.+||+.+++... +..+..     .+..+.|+|||+.++...++.+++|+...+ ..........
T Consensus        80 ~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~~~~~-----~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g-~~~~~t~~~~  152 (470)
T d2bgra1          80 YNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPN-----NTQWVTWSPVGHKLAYVWNNDIYVKIEPNL-PSYRITWTGK  152 (470)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECC-SSCCCT-----TEEEEEECSSTTCEEEEETTEEEEESSTTS-CCEECCSCCB
T ss_pred             ECCcceeeeccCceEEEEECCCCcccc-cccCCc-----cccccccccCcceeeEeecccceEEECCCC-ceeeeeeccC
Confidence            53         5678899999987543 444443     788999999999999888889999999874 2222111000


Q ss_pred             c--ccC---------CCCCceEEEEEccCCCcEEEEEeCCCc-EEEE
Q 023672          216 G--NKE---------GQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIY  250 (279)
Q Consensus       216 ~--~~~---------~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~w  250 (279)
                      .  ...         ...+....+.||| +|..|+....|.+ +..|
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEE
T ss_pred             CCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceE
Confidence            0  000         1123356688999 8888888765543 4433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=2.9e-10  Score=87.59  Aligned_cols=137  Identities=10%  Similarity=-0.032  Sum_probs=94.9

Q ss_pred             ccCCCCcEEEEec-----CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-----------cCCeE
Q 023672          133 ASDPTSCVFASTT-----RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----------YNKSV  196 (279)
Q Consensus       133 ~~~~~~~~l~s~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----------~d~~i  196 (279)
                      +.+|+++.+++..     .+..|.+||..+++.+..+....       ...++|+|||++|++.           .++.|
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-------~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-------LPNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-------SCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-------CCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            4588999887653     45579999999999988886543       2379999999988732           36889


Q ss_pred             EEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe--CCCcEEEEecCCCeEEEEEeecCC-------C
Q 023672          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEG-------G  267 (279)
Q Consensus       197 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~-------~  267 (279)
                      ++||+.++ +....+................++|+| ++..++.++  .+..+.+||..+++.+..+..+..       .
T Consensus        81 ~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          81 EVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             EEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred             EEEECCCC-CEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence            99999984 333332222111112223456789999 777666554  466799999999998877765432       3


Q ss_pred             EEEEEEccCCC
Q 023672          268 VTHVSKLSSAY  278 (279)
Q Consensus       268 v~~~~~spdg~  278 (279)
                      ...+++++||+
T Consensus       159 ~~~~~~~~dg~  169 (355)
T d2bbkh_         159 DTFFMHCRDGS  169 (355)
T ss_dssp             TEEEEEETTSC
T ss_pred             cceEEEcCCCC
Confidence            45578888875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=6.5e-09  Score=80.53  Aligned_cols=214  Identities=11%  Similarity=0.053  Sum_probs=117.9

Q ss_pred             eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee
Q 023672           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (279)
Q Consensus        36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (279)
                      +..||..++.+.....   ........+..|+|+|+++.|+++.. +.+..|.+.......               . ..
T Consensus        18 ~~~fd~~~~~l~~~~~---~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~---------------~-~~   77 (365)
T d1jofa_          18 TVQFDDEKLTCKLIKR---TEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIV---------------H-EA   77 (365)
T ss_dssp             EEEEETTTTEEEEEEE---EECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEE---------------E-EE
T ss_pred             EEEEcCCCCeEEEeee---eeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeE---------------E-Ee
Confidence            4566777766532111   22233445678999999999988765 567788776321100               0 00


Q ss_pred             ecCCCceEEEEeeCcccccCCCCcE--EEEec-CCCcEEEEECCC-CeeeEEEecc-----------CccccccceeeEE
Q 023672          116 VTEGESVYDFCWFPHMSASDPTSCV--FASTT-RDHPIHLWDATT-GLLRCTYRAY-----------DAVDEITAAFSVA  180 (279)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~--l~s~~-~d~~i~i~d~~~-~~~~~~~~~~-----------~~~~~~~~v~~~~  180 (279)
                      .      ....-.|..++++++++.  ++++. ..+.|..+.+.. +.....+...           ........+.++.
T Consensus        78 ~------~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~  151 (365)
T d1jofa_          78 S------HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV  151 (365)
T ss_dssp             E------EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE
T ss_pred             e------ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEE
Confidence            0      011124556677888874  33332 245555554422 1111111100           0001112467999


Q ss_pred             ECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecCCCeE
Q 023672          181 FNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDNMEL  257 (279)
Q Consensus       181 ~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~~~~~  257 (279)
                      |+|+|+++++.  ....|.+|+....+... .......  .........++|+| ++.++ ++...++.|.+|++..+..
T Consensus       152 ~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~-~~~~~~~--~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         152 FDPTETYLYSADLTANKLWTHRKLASGEVE-LVGSVDA--PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCEE-EEEEEEC--SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ECCCCCEEEEeeCCCCEEEEEEccCCCcee-eccceee--cCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCCc
Confidence            99999988854  56789999876533222 1111111  12345688999999 66665 5555688899999876542


Q ss_pred             --EEEEee-----------------cCCCEEEEEEccCCCC
Q 023672          258 --LYVLHG-----------------QEGGVTHVSKLSSAYT  279 (279)
Q Consensus       258 --~~~~~~-----------------~~~~v~~~~~spdg~~  279 (279)
                        +.....                 +......+.++|||++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence              222111                 1113567999999985

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.6e-08  Score=72.66  Aligned_cols=199  Identities=12%  Similarity=0.094  Sum_probs=109.5

Q ss_pred             ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC-C--eEEEEeCCCCccccccccccccCCC
Q 023672           31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED-K--TLRIFSLPENGISYDVNACSLAKDQ  107 (279)
Q Consensus        31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~  107 (279)
                      ...+.+++.|..-.....       +..+...+...+|||||+.||..... +  .+.+.+...+...            
T Consensus        16 ~~~~~l~i~d~dG~~~~~-------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~------------   76 (269)
T d2hqsa1          16 QFPYELRVSDYDGYNQFV-------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------   76 (269)
T ss_dssp             SCCEEEEEEETTSCSCEE-------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE------------
T ss_pred             CceEEEEEEcCCCCCcEE-------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee------------
Confidence            334567777766544432       33345668899999999999865443 2  3555555543221            


Q ss_pred             CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEE--EEECCCCeeeEEEeccCccccccceeeEEECCC
Q 023672          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIH--LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT  184 (279)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~--i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (279)
                            .............|       +|+|..++.... ++...  .+...............      ......++++
T Consensus        77 ------~~~~~~~~~~~~~~-------spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  137 (269)
T d2hqsa1          77 ------QVASFPRHNGAPAF-------SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS------NNTEPTWFPD  137 (269)
T ss_dssp             ------EEECCSSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS------CEEEEEECTT
T ss_pred             ------EEeeeeccccccee-------cCCCCeeeEeeecCCccceeecccccccceeeeeccc------cccccccccc
Confidence                  22333445556666       778888776543 33322  23332222222222111      3345567777


Q ss_pred             CCEEE-Ee-cCCe--EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEE--EecCCCeE
Q 023672          185 GTKIF-AG-YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAI--YREDNMEL  257 (279)
Q Consensus       185 ~~~l~-~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~--wd~~~~~~  257 (279)
                      +..++ ++ .++.  |.+.++...  ....   .    ...........|+| ++..++..+. .+...+  .|...+..
T Consensus       138 ~~~~~~~~~~~g~~~i~~~~~~~~--~~~~---~----~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         138 SQNLAFTSDQAGRPQVYKVNINGG--APQR---I----TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSS--CCEE---C----CCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             cccceecccccCCceEeeeecccc--ccee---e----eccccccccccccc-ccceeEEEeecCCceeeeEeecccccc
Confidence            76665 44 5554  555555542  1111   1    23345677889999 6666665544 444444  45444433


Q ss_pred             EEEEeecCCCEEEEEEccCCCC
Q 023672          258 LYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       258 ~~~~~~~~~~v~~~~~spdg~~  279 (279)
                        .+..+........|||||++
T Consensus       208 --~~~~~~~~~~~p~~SPDG~~  227 (269)
T d2hqsa1         208 --QVLSSTFLDETPSLAPNGTM  227 (269)
T ss_dssp             --EECCCSSSCEEEEECTTSSE
T ss_pred             --eEeecCccccceEECCCCCE
Confidence              34445667788999999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.16  E-value=1.8e-08  Score=76.30  Aligned_cols=188  Identities=11%  Similarity=0.076  Sum_probs=114.6

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .-..++|.++++.|+++.....|...+.........                .....+.+..    .|+.++++++|++.
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~----------------~~~~~g~~~~----~pndl~~d~~G~ly  131 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIA----------------KKDSEGRRMQ----GCNDCAFDYEGNLW  131 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECC----------------SBCTTSCBCB----CCCEEEECTTSCEE
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEE----------------eccccccccC----CCcEEEECCCCCEE
Confidence            356899999999888887777788888765422100                0000111110    13334557788776


Q ss_pred             EEecC---------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC----EEE-Ee-cCCeEEEEE
Q 023672          142 ASTTR---------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT----KIF-AG-YNKSVRVFD  200 (279)
Q Consensus       142 ~s~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~-~~-~d~~i~~~d  200 (279)
                      ++-..               .|.|..++.. ++.........      ..+.++|+|++.    .|+ +. ..+.|..||
T Consensus       132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~------~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d  204 (314)
T d1pjxa_         132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ------FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES------SEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             EecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcc------eeeeeEECCCCCcceeEEEEEeecccceEEee
Confidence            65321               2334444432 33332222111      446889988764    454 43 788999999


Q ss_pred             ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      +...+.. .....+.............+++.. +|+++++....+.|.+||...++.+..+..+...+++++|.||++
T Consensus       205 ~~~~g~~-~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         205 IKGPAKI-ENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEETTEE-EEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             ccCcccc-ceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence            8753322 111111111112233466899999 888888887889999999988888777877667889999999986

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.10  E-value=2.2e-07  Score=70.31  Aligned_cols=189  Identities=7%  Similarity=-0.006  Sum_probs=109.2

Q ss_pred             CCCceEEEEEccCCCeEEEeeCC----CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672           59 PNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (279)
                      .......+++++||+++++...+    +.+...+..........               ...........+       ++
T Consensus        80 ~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~nd~-------~~  137 (319)
T d2dg1a1          80 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII---------------EDLSTAYCIDDM-------VF  137 (319)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE---------------CSSSSCCCEEEE-------EE
T ss_pred             CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec---------------cCCCcccCCcce-------eE
Confidence            34457789999999877765332    23444444332211000               000111223334       44


Q ss_pred             CCCCcEEEEecC------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCC
Q 023672          135 DPTSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR  206 (279)
Q Consensus       135 ~~~~~~l~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~  206 (279)
                      .++|++.++...      .+.+..++...+..........      ..+.++|+|+++.|+ +- ..+.|..||+...+.
T Consensus       138 d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~------~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~  211 (319)
T d2dg1a1         138 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS------VANGIALSTDEKVLWVTETTANRLHRIALEDDGV  211 (319)
T ss_dssp             CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred             EeccceeecccccccccCcceeEEEecccceeEEEeeccc------eeeeeeeccccceEEEecccCCceEEEEEcCCCc
Confidence            788886665432      1235555544333222222111      457899999998776 43 788999999976443


Q ss_pred             ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec------CCCEEEEEEccCC
Q 023672          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------EGGVTHVSKLSSA  277 (279)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~spdg  277 (279)
                      .....................+++.+ +|.+.++....+.|.+||. +|+.+..+...      ...+++++|.|++
T Consensus       212 ~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         212 TIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             SEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             eeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            33222111111112223366899999 8888888888999999994 78888887643      2357889998865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=3e-07  Score=68.14  Aligned_cols=203  Identities=12%  Similarity=0.225  Sum_probs=122.6

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-----------cc--CCCCccc-------cee-ee-cCC
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-----------LA--KDQDSYE-------ASL-VV-TEG  119 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~--~~~~~~~-------~~~-~~-~~~  119 (279)
                      .-..|+++++++.+++-..+..|++||.+.. .........           ..  .......       ..+ .. ..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            4578999999998877777889999997632 211110000           00  0000000       000 00 111


Q ss_pred             CceEEEE----eeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC
Q 023672          120 ESVYDFC----WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (279)
Q Consensus       120 ~~v~~~~----~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~  194 (279)
                      ..+..+.    ..|..+++.+++.++++....+.+.+++.. ++.+..+.....   ......+++.++++.+++. ..+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~---~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH---LEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTT---CSSEEEEEECSSSEEEEEEGGGT
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccc---ccccceeeeccceeEEeeecccc
Confidence            1111110    123345677788877777777778777754 555555533221   2256788999999877766 889


Q ss_pred             eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecCCCeEEEEEeecC--CCEEEE
Q 023672          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHGQE--GGVTHV  271 (279)
Q Consensus       195 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~--~~v~~~  271 (279)
                      .|++||...  ..   +..+.  ..+.......+++.+ ++.++++-.. ++.|.+|+ .+|+.+.++....  ....+|
T Consensus       179 ~V~~~d~~G--~~---~~~~g--~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~v  249 (279)
T d1q7fa_         179 CVKVFNYEG--QY---LRQIG--GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDV  249 (279)
T ss_dssp             EEEEEETTC--CE---EEEES--CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEE
T ss_pred             ceeeeecCC--ce---eeeec--ccccccCCccccccc-CCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEE
Confidence            999999864  22   22221  134455678999999 7887777554 45699998 5788887776433  357899


Q ss_pred             EEccCCC
Q 023672          272 SKLSSAY  278 (279)
Q Consensus       272 ~~spdg~  278 (279)
                      ++.|||+
T Consensus       250 av~~dG~  256 (279)
T d1q7fa_         250 ALMDDGS  256 (279)
T ss_dssp             EEETTTE
T ss_pred             EEeCCCc
Confidence            9999985

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.00  E-value=2.5e-07  Score=71.38  Aligned_cols=180  Identities=16%  Similarity=0.130  Sum_probs=102.0

Q ss_pred             ceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           62 FLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .+.++.|+|||+++++++. ...|.+|+.............            .....+..       |..++|+|++++
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~------------~~~~~g~g-------Pr~i~f~pdg~~  206 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV------------DAPDPGDH-------PRWVAMHPTGNY  206 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE------------ECSSTTCC-------EEEEEECTTSSE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce------------eecCCCCc-------eEEEEECCCCce
Confidence            4789999999998887764 457888876543211100000            01112222       333456889988


Q ss_pred             EEEe-cCCCcEEEEECCCCeeeEEEe-----ccC---------ccccccceeeEEECCCCCEEEEe--cC-----CeEEE
Q 023672          141 FAST-TRDHPIHLWDATTGLLRCTYR-----AYD---------AVDEITAAFSVAFNPTGTKIFAG--YN-----KSVRV  198 (279)
Q Consensus       141 l~s~-~~d~~i~i~d~~~~~~~~~~~-----~~~---------~~~~~~~v~~~~~~~~~~~l~~~--~d-----~~i~~  198 (279)
                      +++. ..+++|.+|++..++......     ...         ..........+.++|+|++++++  .+     ..|..
T Consensus       207 ~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~  286 (365)
T d1jofa_         207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             EEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEE
Confidence            7555 467899999987654322111     100         00111235578999999999854  22     23777


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecCCCe--EEEEEe
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNME--LLYVLH  262 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~~~~--~~~~~~  262 (279)
                      |++...+...... .+... .........++++|.+|.+|+++ ..++.|.+|++....  .+..+.
T Consensus       287 ~~~~~~g~~~~~~-~~~~~-~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~  351 (365)
T d1jofa_         287 FKLRDCGSIEKQL-FLSPT-PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVR  351 (365)
T ss_dssp             EEECTTSCEEEEE-EEEEC-SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCCceeeEe-EeeEE-EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEE
Confidence            8876533222111 11111 12233456789998456765554 577889999876443  344444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=8.7e-08  Score=72.04  Aligned_cols=184  Identities=13%  Similarity=0.083  Sum_probs=111.7

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .+..++++|||+++++...+++|..|+......                   ........+..+       +++++|+++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-------------------~~~~~~~~~~gl-------a~~~dG~l~   82 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHATVEGKVSGL-------AFTSNGDLV   82 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEECSSEEEEE-------EECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-------------------EEEcCCCCcceE-------EEcCCCCeE
Confidence            588999999999999999999988887653211                   111222334444       558899999


Q ss_pred             EEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeec--cc
Q 023672          142 ASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL--KG  216 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~--~~  216 (279)
                      ++...++.+..++.....  ..........    ..+..+.+.++++++++. .++.+..+|...+..........  ..
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          83 ATGWNADSIPVVSLVKSDGTVETLLTLPDA----IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTC----SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             EEecCCceEEEEEecccccceeeccccCCc----cccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence            988888888888765432  2222211111    157789999999888765 78888888887632111111100  00


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE---EEEeecCCCEEEEEEccCCC
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~spdg~  278 (279)
                      ...........+.++.  +.++++.+..+.|+.++.......   ..+. ......+++|.+||+
T Consensus       159 ~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~  220 (302)
T d2p4oa1         159 NSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN  220 (302)
T ss_dssp             STTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC
T ss_pred             eccCcccccccccccC--CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCC
Confidence            1112223455666654  457777788888888887654321   1222 223445677777774

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=1.4e-07  Score=70.95  Aligned_cols=190  Identities=10%  Similarity=0.029  Sum_probs=117.5

Q ss_pred             CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ...+.+.+++|+++|+++++...++.+.+|+.......              ...............+.       +.++
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~n~i~-------~~~~  123 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--------------VETLLTLPDAIFLNGIT-------PLSD  123 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--------------EEEEEECTTCSCEEEEE-------ESSS
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc--------------eeeccccCCccccceeE-------EccC
Confidence            34567999999999998888888888888876542110              00011122333444554       4788


Q ss_pred             CcEEEEecCCCcEEEEECCCCeeeEEEeccCc-----cccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceee
Q 023672          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-----VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK  210 (279)
Q Consensus       138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~  210 (279)
                      ++++++-+.++.+..+|..++...........     ......+..+.+..  ..++ +. ..+.|..++........ .
T Consensus       124 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~-~  200 (302)
T d2p4oa1         124 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPG-E  200 (302)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBC-C
T ss_pred             CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEecccccccccc-c
Confidence            98988888899999999887754433322111     01111344566554  4444 43 78899999887632221 1


Q ss_pred             eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe--ecCCCEEEEEE---ccCCC
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVSK---LSSAY  278 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~---spdg~  278 (279)
                      ....     ........+++++ +|.++++...++.|..++.. ++......  ..-..+++++|   +||++
T Consensus       201 ~~~~-----~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         201 PEIF-----VEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCT  266 (302)
T ss_dssp             CEEE-----EESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             cccc-----cCCCCCcceEECC-CCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCC
Confidence            1111     1123356799999 88888888888999999864 44333332  23346899999   67775

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.94  E-value=1.3e-06  Score=65.26  Aligned_cols=188  Identities=11%  Similarity=0.063  Sum_probs=117.3

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (279)
                      ...+.++++.+++.++++ +.+ -+.++|..+++........             .......+.++       .+.|+|+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~-------------~~~~~~~~nd~-------~vd~~G~  115 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE-------------SDLPGNRSNDG-------RMHPSGA  115 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS-------------TTCTTEEEEEE-------EECTTSC
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee-------------cCCCcccceee-------EECCCCC
Confidence            346889999999876664 455 4888998876542110000             00011233444       3477888


Q ss_pred             EEEEecC----CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672          140 VFASTTR----DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       140 ~l~s~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +.++...    .+.-.+|.+..++.........      ....++|+++++.++ +. ..+.|..|++............
T Consensus       116 iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~------~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~  189 (295)
T d2ghsa1         116 LWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS------IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  189 (295)
T ss_dssp             EEEEEEETTCCTTCEEEEEEETTEEEEEEEEES------SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             EEEEeccccccccceeEeeecCCcEEEEeeccC------CcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence            7665432    2344567766776554443322      456899999998776 44 6788999988642211100001


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc-cCC
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL-SSA  277 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-pdg  277 (279)
                      ......+..+....+++.. +|.+.++.-..+.|..|| ..++.+..+......+++++|- ||+
T Consensus       190 ~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         190 VFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             EEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EEeccCcccccccceEEcC-CCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCC
Confidence            1111133445678899999 888887776778899999 5788888888766779999995 554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=1.6e-07  Score=68.92  Aligned_cols=177  Identities=10%  Similarity=0.067  Sum_probs=108.8

Q ss_pred             eEEEEEccCCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           63 LKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      -.+|+++++|+.+++. +..+.+..++.......                   .....     -...|..+++++++.++
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-------------------~~~~~-----~~~~p~gvav~~~g~i~   71 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-------------------VLPFN-----GLYQPQGLAVDGAGTVY   71 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEE-------------------ECCCC-----SCCSCCCEEECTTCCEE
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-------------------EeccC-----CccCceEEEEcCCCCEE
Confidence            4789999999966554 45577777766533210                   00000     01235566778899888


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCC
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  220 (279)
                      ++....+.+++++-.+...+......      ..+.++++.++++++++. .+..+..++......   .....     .
T Consensus        72 v~d~~~~~i~~~~~~~~~~~~~~~~~------~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~---~~~~~-----~  137 (260)
T d1rwia_          72 VTDFNNRVVTLAAGSNNQTVLPFDGL------NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPF-----T  137 (260)
T ss_dssp             EEETTTEEEEECTTCSCCEECCCCSC------CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC---EECCC-----C
T ss_pred             Eeeeeeceeeeeeeccceeeeeeeee------eecccccccccceeEeecccccccccccccccee---eeeee-----c
Confidence            77777777776665444433222211      156789999999887765 667777777654211   11111     1


Q ss_pred             CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY  278 (279)
Q Consensus       221 ~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~  278 (279)
                      .......++++| ++.++++...++.|..+|.............-....+|++.++|+
T Consensus       138 ~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         138 GLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT  194 (260)
T ss_dssp             SCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC
T ss_pred             ccCCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeee
Confidence            123457899999 888888888888899999876544332223345678899988875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.90  E-value=1.2e-07  Score=74.07  Aligned_cols=157  Identities=13%  Similarity=0.037  Sum_probs=95.9

Q ss_pred             CCCceEEEEEccCCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      |.-.+....++|||++|++. ..+.+|.++|+.+++....                +....+.....+++       +|+
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~i----------------i~iP~g~gphgi~~-------spd  126 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI----------------THIPNVQAIHGLRL-------QKV  126 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE----------------EECTTCCCEEEEEE-------CCS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeE----------------EecCCCCCccceEE-------ecc
Confidence            44556666678999988655 5688999999998754221                22233344455544       666


Q ss_pred             Cc--EEEEecCCC-----------------cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-Ce-
Q 023672          138 SC--VFASTTRDH-----------------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-KS-  195 (279)
Q Consensus       138 ~~--~l~s~~~d~-----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-~~-  195 (279)
                      ++  +++..+.+.                 .+..+|..+.+....+....      .+..+.|+|+|++++++ .+ .. 
T Consensus       127 g~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~------~p~~v~~spdGk~a~vt~~nse~~  200 (441)
T d1qnia2         127 PKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG------NLDNTDADYTGKYATSTCYNSERA  200 (441)
T ss_dssp             SBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCC
T ss_pred             CCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCC------CccceEECCCCCEEEEEecCCCce
Confidence            76  444333322                 23558888888777776654      56789999999998843 22 11 


Q ss_pred             -------------EEEEE--------------------------ccCCCCceeeeeecccccCCCCCceEEEEEccCCCc
Q 023672          196 -------------VRVFD--------------------------VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (279)
Q Consensus       196 -------------i~~~d--------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  236 (279)
                                   |.+.+                          ... .   .....+    ... .....+.++| +|.
T Consensus       201 ~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~---~v~~~I----Pvg-ksPhGv~vSP-DGk  270 (441)
T d1qnia2         201 VDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-S---EFTRYI----PVP-KNPHGLNTSP-DGK  270 (441)
T ss_dssp             SSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-C---SSEEEE----CCB-SSCCCEEECT-TSC
T ss_pred             EEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-C---ceEEEE----eCC-CCccCceECC-CCC
Confidence                         22222                          111 0   111111    111 2356789999 565


Q ss_pred             -EEEEEeCCCcEEEEecCC
Q 023672          237 -MLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       237 -~l~~~~~dg~i~~wd~~~  254 (279)
                       +++++..+++|.+||+.+
T Consensus       271 yl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         271 YFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeCCcCCcEEEEEeeh
Confidence             456788899999999865

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=5e-07  Score=66.19  Aligned_cols=177  Identities=12%  Similarity=0.056  Sum_probs=109.6

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      ....++++++++.+++....+.+++++-.+....                  ...........+       +++++++++
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~------------------~~~~~~~~p~~i-------avd~~g~i~  112 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV------------------LPFDGLNYPEGL-------AVDTQGAVY  112 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE------------------CCCCSCCSEEEE-------EECTTCCEE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceee------------------eeeeeeeecccc-------cccccceeE
Confidence            3567899999988777777777766654432110                  001111223333       457788877


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCC
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  220 (279)
                      ++-.....+..++...... .......    ......++++++++++++. .++.|..+|......     ....   ..
T Consensus       113 v~d~~~~~~~~~~~~~~~~-~~~~~~~----~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-----~~~~---~~  179 (260)
T d1rwia_         113 VADRGNNRVVKLAAGSKTQ-TVLPFTG----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----VVLP---FT  179 (260)
T ss_dssp             EEEGGGTEEEEECTTCSSC-EECCCCS----CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-----EECC---CS
T ss_pred             eecccccccccccccccee-eeeeecc----cCCcceeeecCCCCEeeecccccccccccccccee-----eeee---cc
Confidence            7766666677777654332 2221111    1145689999999877765 788899999875311     1111   12


Q ss_pred             CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCC
Q 023672          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       221 ~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~  278 (279)
                      .......+++++ ++.++++....+.|..++...... ..+. ..-....+|+++++|.
T Consensus       180 ~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         180 DITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             SCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCC
T ss_pred             ccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCC
Confidence            234568899999 888888888888888888654432 2222 2224578999999874

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.88  E-value=4.1e-08  Score=75.95  Aligned_cols=135  Identities=11%  Similarity=-0.088  Sum_probs=87.9

Q ss_pred             CCCCcE--EE-EecCCCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-----------cCCeEEE
Q 023672          135 DPTSCV--FA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----------YNKSVRV  198 (279)
Q Consensus       135 ~~~~~~--l~-s~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----------~d~~i~~  198 (279)
                      .++++.  ++ ....++.  |.+||..+++.+..+..+..       ..++|+|+|+.+++.           .|+.|++
T Consensus        28 ~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-------~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v  100 (368)
T d1mdah_          28 GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-------SLAVAGHSGSDFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-------CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred             CCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-------CcceECCCCCEEEEEcccCccccccccCCeEEE
Confidence            455553  32 3444554  66779999998888776542       358999999988842           2677999


Q ss_pred             EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCeEEEEEeecCC-------CEEE
Q 023672          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEG-------GVTH  270 (279)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~-------~v~~  270 (279)
                      ||..+. +....+................++|+| +|++|+.+. .++.+.+||+.+++.+..+..+..       ....
T Consensus       101 ~D~~t~-~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (368)
T d1mdah_         101 FDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATH  178 (368)
T ss_dssp             ECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEE
T ss_pred             EECCCC-cEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceE
Confidence            999884 322222111000011122344689999 777776664 678999999999998888765443       3345


Q ss_pred             EEEccCCC
Q 023672          271 VSKLSSAY  278 (279)
Q Consensus       271 ~~~spdg~  278 (279)
                      +++++||+
T Consensus       179 v~~~~Dg~  186 (368)
T d1mdah_         179 YLGSCPAS  186 (368)
T ss_dssp             ECCCCTTS
T ss_pred             EEEcCCCC
Confidence            77788875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=4.1e-06  Score=61.23  Aligned_cols=182  Identities=10%  Similarity=0.053  Sum_probs=99.8

Q ss_pred             ccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672           55 TSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (279)
Q Consensus        55 ~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (279)
                      .+..+.+......|+|+|+.++.... ++...++.........                ..............+      
T Consensus        77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~------  134 (269)
T d2hqsa1          77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----------------RQVTDGRSNNTEPTW------  134 (269)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------EECCCCSSCEEEEEE------
T ss_pred             EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccc----------------eeeeecccccccccc------
Confidence            34456678889999999998876543 3333333222111000                000111111222222      


Q ss_pred             cCCCCcE-EEEecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCce
Q 023672          134 SDPTSCV-FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF  208 (279)
Q Consensus       134 ~~~~~~~-l~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~  208 (279)
                       ++++.. +++...++  .|.+.++..+...... ....     ......|+|+++.++ .. ..+...+|.........
T Consensus       135 -~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~~~-----~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         135 -FPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEGS-----QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             -CTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CSSS-----EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             -ccccccceecccccCCceEeeeecccccceeee-cccc-----cccccccccccceeEEEeecCCceeeeEeecccccc
Confidence             334443 33444444  4556666655433222 2222     556789999999888 44 55555555554422221


Q ss_pred             eeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMELLYVLHGQEGGVTHVSKLS  275 (279)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp  275 (279)
                      .   .     ..+........||| +|+.|+-.+.   ...|+++++..+.. ..+....+.+...+|||
T Consensus       208 ~---~-----~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         208 Q---V-----LSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             E---E-----CCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             e---E-----eecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            1   1     12234567789999 7777664443   33588999876654 45666677888999998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=9.6e-07  Score=70.29  Aligned_cols=217  Identities=7%  Similarity=-0.018  Sum_probs=117.3

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee---------CCCeEEEEeCCCCccccccccccccC
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS---------EDKTLRIFSLPENGISYDVNACSLAK  105 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~  105 (279)
                      .+.++|+.++.......   ...-..-.+....||||+++++.+.         ..+.+.+||+.++........     
T Consensus        38 ~i~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~-----  109 (465)
T d1xfda1          38 TVRLWNVETNTSTVLIE---GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-----  109 (465)
T ss_dssp             CEEEBCGGGCCCEEEEC---TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-----
T ss_pred             cEEEEECCCCCEEEEEc---CccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc-----
Confidence            35566666554322111   1111223567788999999887653         357788999987643211000     


Q ss_pred             CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc-------------c
Q 023672          106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-------------E  172 (279)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-------------~  172 (279)
                                ......+..       ..+||+|+.||... ++.|.+.+..++...+.........             .
T Consensus       110 ----------~~~~~~l~~-------~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1         110 ----------EVSNAKLQY-------AGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             ----------TCCSCCCSB-------CCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             ----------cCCccccce-------eeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence                      001112222       25689999998876 6678888887776555443221100             0


Q ss_pred             ccceeeEEECCCCCEEEE-e-cCCeEEEEEccCCC-Cc---eee--------------ee------------ec-ccccC
Q 023672          173 ITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPG-RD---FEK--------------YS------------TL-KGNKE  219 (279)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~-~-~d~~i~~~d~~~~~-~~---~~~--------------~~------------~~-~~~~~  219 (279)
                      ...-..+.|||||+.|+. . .+..|..+.+.... ..   ...              +.            .. .....
T Consensus       172 ~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~  251 (465)
T d1xfda1         172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (465)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCc
Confidence            001146789999999984 3 55555555442210 00   000              00            00 00001


Q ss_pred             CCCCceEEEEEccCCCcEEEEEeC-C---CcEEEEecCCCeEEEEEeec-CCCE----EEEEEccCCC
Q 023672          220 GQAGIMSAIAFSPTHTGMLAIGSY-S---QTSAIYREDNMELLYVLHGQ-EGGV----THVSKLSSAY  278 (279)
Q Consensus       220 ~~~~~v~~~~~sp~~~~~l~~~~~-d---g~i~~wd~~~~~~~~~~~~~-~~~v----~~~~~spdg~  278 (279)
                      .....+..+.|+| ++.+++.... +   ..|.++|..++++...+... .++|    ....|+|||+
T Consensus       252 ~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~  318 (465)
T d1xfda1         252 MREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (465)
T ss_dssp             GSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             cccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCC
Confidence            1223467889999 7776665432 2   24888999999876555433 2222    3467888886

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=5.9e-05  Score=55.41  Aligned_cols=160  Identities=16%  Similarity=0.178  Sum_probs=101.8

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCcccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~  138 (279)
                      .....++++.++++++++....+.+.+++.+.... ..                .. ..+......+       ++++++
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~-~~----------------~g~~~~~~~~~~i-------~~d~~g  168 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-HK----------------FGCSKHLEFPNGV-------VVNDKQ  168 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EE----------------EECTTTCSSEEEE-------EECSSS
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccCCcee-ec----------------cccccccccccee-------eeccce
Confidence            44567888888888777777777777777653211 00                00 0111223333       447788


Q ss_pred             cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeeccc
Q 023672          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKG  216 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~  216 (279)
                      +.+++....+.|.+||.. ++.+..+....   ....+..|++.++|+++++-  .++.|.+|+..  ++..   ..+..
T Consensus       169 ~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g---~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~---~~~~~  239 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYE-GQYLRQIGGEG---ITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLI---SALES  239 (279)
T ss_dssp             EEEEEEGGGTEEEEEETT-CCEEEEESCTT---TSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEE---EEEEE
T ss_pred             eEEeeeccccceeeeecC-Cceeeeecccc---cccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEE---EEEeC
Confidence            888888888999999964 56666654322   12256789999999977764  45679999854  2222   22211


Q ss_pred             ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                        .........+++.| ++.+++ ++.++.|++|......
T Consensus       240 --~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         240 --KVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             --SSCCSCEEEEEEET-TTEEEE-EETTTEEEEEECSCCC
T ss_pred             --CCCCCCEeEEEEeC-CCcEEE-EeCCCeEEEEEeeeec
Confidence              12223578899999 887655 4578899999986654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-06  Score=69.45  Aligned_cols=149  Identities=14%  Similarity=0.099  Sum_probs=85.8

Q ss_pred             EEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-
Q 023672           67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-  145 (279)
Q Consensus        67 ~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-  145 (279)
                      .|.+++.++. -..+|.|.+||+.++..........              .....+...       .+|||+++++... 
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~-------~~SpD~~~vl~~~~   80 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKK--------------IESLRAIRY-------EISPDREYALFSYN   80 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTT--------------TTTTTCSEE-------EECTTSSEEEEEES
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCcc--------------cccccccee-------EECCCCCeEEEEEc
Confidence            5888887665 3557889999998664311100000              001122222       3588999887753 


Q ss_pred             --------CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccc-
Q 023672          146 --------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-  216 (279)
Q Consensus       146 --------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~-  216 (279)
                              ..+.+.++|+.++...........   ...+....|||+|+.++-..++.|.+.+...+ ...+....-.. 
T Consensus        81 ~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~---~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~-~~~~lt~~g~~~  156 (465)
T d1xfda1          81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS---NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK-QAIRVVSTGKEG  156 (465)
T ss_dssp             CCCCSSSCCCSEEEEEESSSCCCEECCCTTCC---SCCCSBCCBCSSTTCEEEEETTEEEEESSSSS-CCEEEECCCBTT
T ss_pred             ccceeEeeccccEEEEEccCCceeeccCccCC---ccccceeeeccCCceEEEEecceEEEEecCCC-ceEEEecccCcc
Confidence                    356788999998875433222111   11455689999999998667788988888753 22222111000 


Q ss_pred             -ccCCCC---------CceEEEEEccCCCcEEEEEe
Q 023672          217 -NKEGQA---------GIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       217 -~~~~~~---------~~v~~~~~sp~~~~~l~~~~  242 (279)
                       ...+..         +.-.++.||| +|..||...
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~  191 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAA  191 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEE
T ss_pred             eeeccccchhhhhhhccccceEEECC-CCCeEEEEE
Confidence             000000         1124778999 888887764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.48  E-value=4.3e-05  Score=57.22  Aligned_cols=186  Identities=10%  Similarity=0.092  Sum_probs=101.5

Q ss_pred             eEEEEEccCCCeEEEeeC-------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672           63 LKGIKWSPDGSSFLTSSE-------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (279)
                      ..+++|.++|+++++...       +|+|..||..++.....                 .  . .........|..++++
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~-----------------~--~-~~~~~~~g~P~Gl~~~   79 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-----------------C--K-PEVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-----------------E--C-CEETTEECCEEEEEEC
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEE-----------------E--C-CccccCCCcceeEEEe
Confidence            567899999997765432       46788888876532110                 0  0 0000111124456778


Q ss_pred             CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecC--------------CeEEEEEc
Q 023672          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN--------------KSVRVFDV  201 (279)
Q Consensus       136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--------------~~i~~~d~  201 (279)
                      ++++.++++...+.|..++...+... .+...........+..+.+.++|++.++...              ..-++|-+
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence            99988888877777888887655322 2211111111124578999999988775311              11234433


Q ss_pred             cCCCCceeeeeecccccCCCCCceEEEEEccCCCc-----EEEEEeCCCcEEEEecCCCeEEE------EEee-cCCCEE
Q 023672          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-----MLAIGSYSQTSAIYREDNMELLY------VLHG-QEGGVT  269 (279)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----~l~~~~~dg~i~~wd~~~~~~~~------~~~~-~~~~v~  269 (279)
                      ...+........        -...+.++|+| ++.     ++++-+..+.|..||+.....+.      .+.. .....-
T Consensus       159 ~~dg~~~~~~~~--------~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         159 TTDGQMIQVDTA--------FQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CTTSCEEEEEEE--------ESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             eecCceeEeeCC--------cceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            322222211111        12356889998 443     55666778889988876432221      1111 122355


Q ss_pred             EEEEccCCC
Q 023672          270 HVSKLSSAY  278 (279)
Q Consensus       270 ~~~~spdg~  278 (279)
                      +|++.++|+
T Consensus       230 GiavD~~Gn  238 (314)
T d1pjxa_         230 GMDFDEDNN  238 (314)
T ss_dssp             EEEEBTTCC
T ss_pred             eeEEecCCc
Confidence            677777764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.27  E-value=0.00035  Score=52.27  Aligned_cols=157  Identities=12%  Similarity=0.101  Sum_probs=91.8

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ..+.+++|.++|+++++-...+.|..|+..++....                 ...........       ++++++|++
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~-----------------~~~~~~~~p~g-------la~~~dG~l   95 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-----------------PFVSHKANPAA-------IKIHKDGRL   95 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-----------------EEECSSSSEEE-------EEECTTSCE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE-----------------EEeCCCCCeeE-------EEECCCCCE
Confidence            346789999999977777788999888877542211                 11112222333       455889987


Q ss_pred             EEEecCC----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecC-------CeEEEEEccCCCCcee
Q 023672          141 FASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDVHRPGRDFE  209 (279)
Q Consensus       141 l~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~~~d~~~~~~~~~  209 (279)
                      +++...+    +.+...+...+...........   ...+..+.+.++|++.++...       +.+..++..  +....
T Consensus        96 ~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~  170 (319)
T d2dg1a1          96 FVCYLGDFKSTGGIFAATENGDNLQDIIEDLST---AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVT  170 (319)
T ss_dssp             EEEECTTSSSCCEEEEECTTSCSCEEEECSSSS---CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEE
T ss_pred             EEEecCCCccceeEEEEcCCCceeeeeccCCCc---ccCCcceeEEeccceeecccccccccCcceeEEEecc--cceeE
Confidence            7765432    3355555555544333322111   125678999999987775321       234444443  22222


Q ss_pred             eeeecccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDN  254 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~  254 (279)
                      .+.       ..-...+.++|+| ++. ++++-+..+.|+.||+..
T Consensus       171 ~~~-------~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         171 PII-------QNISVANGIALST-DEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             EEE-------EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEe-------eccceeeeeeecc-ccceEEEecccCCceEEEEEcC
Confidence            211       1122457899999 555 556667788999998753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.11  E-value=0.00029  Score=51.24  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC-C-----CeEEEEeCCCCcc
Q 023672           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-D-----KTLRIFSLPENGI   94 (279)
Q Consensus        35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-d-----g~i~iwd~~~~~~   94 (279)
                      .+++.|+..++..       .+..+.+.+...+|||||++||.... +     ..|.+++..++..
T Consensus        22 dl~~~d~~~g~~~-------~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2          22 DLWEHDLKSGSTR-------KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             EEEEEETTTCCEE-------EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             cEEEEECCCCCEE-------EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            4667788877654       34556677899999999999985432 2     2366677766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.86  E-value=0.0023  Score=47.02  Aligned_cols=152  Identities=15%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             EEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672           64 KGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (279)
Q Consensus        64 ~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (279)
                      -+..|++. ++++.+=-..+.|..||..++...                   .......+..+.+       .+++.+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-------------------~~~~~~~~~~i~~-------~~dg~l~v   74 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-------------------VHALPFMGSALAK-------ISDSKQLI   74 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------------EEECSSCEEEEEE-------EETTEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-------------------EEECCCCcEEEEE-------ecCCCEEE
Confidence            35668874 444445556788999998865321                   1112233444443       55776666


Q ss_pred             EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c----CCeEEEEEccCCCCceeeeeecccc
Q 023672          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y----NKSVRVFDVHRPGRDFEKYSTLKGN  217 (279)
Q Consensus       143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~----d~~i~~~d~~~~~~~~~~~~~~~~~  217 (279)
                      ++ .+ .|.++|..+++.......... .....++.+.+.|+|++.++. .    .+.-.+|.+..+ ........    
T Consensus        75 a~-~~-gl~~~d~~tg~~~~l~~~~~~-~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-~~~~~~~~----  146 (295)
T d2ghsa1          75 AS-DD-GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-KVTKLFAD----  146 (295)
T ss_dssp             EE-TT-EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-EEEEEEEE----
T ss_pred             EE-eC-ccEEeecccceeeEEeeeecC-CCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-cEEEEeec----
Confidence            54 44 488999998876544332222 122267889999999988854 2    234566766652 21111111    


Q ss_pred             cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (279)
Q Consensus       218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~  253 (279)
                          -.....++|++++..++++-+..+.|+.|++.
T Consensus       147 ----~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         147 ----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             ----ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             ----cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence                22457899999444566677778889888864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.0016  Score=49.71  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCce----eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEE
Q 023672          175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF----EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA  248 (279)
Q Consensus       175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~  248 (279)
                      ....+.++|||++++ ++ .+.++.|+|++.-...+    .....+... ....-....-+|+. .|.-..+---|..|.
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e-~elglgPLht~fd~-~g~aytslfids~v~  353 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-PELGLGPLHTAFDG-RGNAYTSLFLDSQVV  353 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC-CBCCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee-cccCcCccccccCC-CceEEEEeeccceEE
Confidence            567899999999999 56 89999999997411000    000011111 11223455678988 787666767899999


Q ss_pred             EEecCC
Q 023672          249 IYREDN  254 (279)
Q Consensus       249 ~wd~~~  254 (279)
                      -|++..
T Consensus       354 kw~~~~  359 (459)
T d1fwxa2         354 KWNIED  359 (459)
T ss_dssp             EEEHHH
T ss_pred             EEecch
Confidence            999853

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.73  E-value=0.00016  Score=52.59  Aligned_cols=98  Identities=13%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             cCCC--CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC-----eEEEEEccCC
Q 023672          134 SDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK-----SVRVFDVHRP  204 (279)
Q Consensus       134 ~~~~--~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~-----~i~~~d~~~~  204 (279)
                      ++|+  |+.++..+ ++.|.+.|+.+++... +.....     ......|||||+.|+ +. .++     .|.+++...+
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~-----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLG-----VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSS-----EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCC-----cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            4677  88888765 4568888999887654 333332     567899999999988 43 332     3666666552


Q ss_pred             CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (279)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~  241 (279)
                        ....+..................|+| +++.|+..
T Consensus        79 --~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          79 --EIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             --EEEECCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             --ceEEeeecCCCccCccccccccccCC-CCCEEEEE
Confidence              22222111111112223456789999 77777764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.33  E-value=0.0078  Score=45.07  Aligned_cols=167  Identities=10%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             eEEEEEccCCCeEEEeeC------------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672           63 LKGIKWSPDGSSFLTSSE------------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (279)
                      --.|+..|+|..+++++.            .|.|.++|+.+.......               +... ++......|.|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~---------------l~~~-~~~~~~~~f~Ph  100 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSE---------------LEII-GNTLDISSFNPH  100 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEE---------------CEEE-CSSSCGGGCCEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceE---------------EEec-CCCCCCcceecc
Confidence            446888899987766542            388888888754321100               0000 011111123333


Q ss_pred             cccc--CCCCc-EEEEe---cCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECCCCCEEEEe----cC------
Q 023672          131 MSAS--DPTSC-VFAST---TRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YN------  193 (279)
Q Consensus       131 ~~~~--~~~~~-~l~s~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d------  193 (279)
                      .+.+  ..++. +|++.   ....+|.++++..... +.-...... .....+..+.+..++.++++-    .+      
T Consensus       101 Gi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~-~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~  179 (340)
T d1v04a_         101 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW  179 (340)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHH
T ss_pred             ceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC-ccccCccceEEecCCCEEEecCccCcChhhhhh
Confidence            3322  33444 33333   2355677777754321 111111111 112256788888888877762    11      


Q ss_pred             ------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672          194 ------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (279)
Q Consensus       194 ------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~  255 (279)
                            +...+|..... . .+...       ..-...+.++++|++..++++-+..+.|+.|++...
T Consensus       180 e~~~~~~~g~v~~~~~~-~-~~~~~-------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         180 EMHLGLAWSFVTYYSPN-D-VRVVA-------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             HHHTTCCCEEEEEECSS-C-EEEEE-------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             hHhhcCCceeEEEEcCC-c-eEEEc-------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence                  23445544431 1 11111       112357899999944456666677888999998644

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.30  E-value=0.018  Score=43.99  Aligned_cols=99  Identities=9%  Similarity=0.012  Sum_probs=60.7

Q ss_pred             EEEEcc---CCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           65 GIKWSP---DGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        65 ~~~~~~---~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      .+++..   ||++|++.. .+.+|.+-|+.+.+.....                .......+..++..     ..|+..+
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi----------------~iPn~~~~HG~r~~-----~~p~T~Y  147 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL----------------EIPNAKGIHGLRPQ-----KWPRSNY  147 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE----------------ECSSCCSEEEEEEC-----CSSBCSE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEE----------------ecCCCCCCceeecc-----cCCCeEE
Confidence            566654   889887655 5889999999876543211                11122222222221     1234445


Q ss_pred             EEEecCC------------------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672          141 FASTTRD------------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (279)
Q Consensus       141 l~s~~~d------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (279)
                      ++..+.+                  +.+.++|..+.+....+....      ....+.++++|+++++
T Consensus       148 V~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g------~ld~~~~s~dGK~af~  209 (459)
T d1fwxa2         148 VFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFS  209 (459)
T ss_dssp             EEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEE
T ss_pred             EEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC------ChhccccCCCCCEEEE
Confidence            5544332                  236678999988877777655      4557999999999884

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.79  E-value=0.07  Score=42.84  Aligned_cols=30  Identities=7%  Similarity=0.068  Sum_probs=25.7

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .+.++++|+.||.++-+|.++|+.+-++..
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            455788899999999999999999977764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.093  Score=37.47  Aligned_cols=119  Identities=6%  Similarity=0.022  Sum_probs=73.4

Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCce
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM  225 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v  225 (279)
                      ..|+-.++.+.+....+....      .+.+++|++..+.++ +- ..+.|...++............+    ......+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~------~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~----~~~~~~p   79 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAP   79 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSSCSCC
T ss_pred             CeEEEEECCCCcceeeeCCCC------ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE----eCCCCCc
Confidence            358888998765444433222      567899999888887 44 66778777775421111111111    1222346


Q ss_pred             EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672          226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       226 ~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd  276 (279)
                      ..+++.+.++.+..+-...+.|.+.++........+........++++.|.
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~  130 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  130 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc
Confidence            678888746666666677788999998876655555555566788888874

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.36  E-value=0.15  Score=39.54  Aligned_cols=112  Identities=13%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC---ccccccceeeEEECCC---CCEEEEe-c-------C-
Q 023672          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFNPT---GTKIFAG-Y-------N-  193 (279)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~l~~~-~-------d-  193 (279)
                      |..++|.|+++++++--..|.|++++..+++.........   ..........|+|+|+   ..+++.+ .       + 
T Consensus        29 P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~~  108 (450)
T d1crua_          29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK  108 (450)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred             ceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCccc
Confidence            3344568899888877667999999988776543332221   1122236678999996   3444421 1       1 


Q ss_pred             ---C--eEEEEEccCCCCceeeeee---cccccCCCCCceEEEEEccCCCcEEEEEeC
Q 023672          194 ---K--SVRVFDVHRPGRDFEKYST---LKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (279)
Q Consensus       194 ---~--~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~  243 (279)
                         .  .+..+..............   .......|  ....+.|.| ++.++++.+.
T Consensus       109 ~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~gg~l~fgp-DG~LYvs~Gd  163 (450)
T d1crua_         109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGP-DQKIYYTIGD  163 (450)
T ss_dssp             CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECT-TSCEEEEECC
T ss_pred             ccccceEEEeeecccccccccceEEEeecccccccc--cccceeEcC-CCCEEEEecC
Confidence               1  2344444432221111111   11111234  356899999 7777776553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.08  E-value=0.078  Score=39.89  Aligned_cols=110  Identities=13%  Similarity=0.193  Sum_probs=67.8

Q ss_pred             CCCCcEEEEecCCC-----------cEEEEECCCCeeeE--EEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEE
Q 023672          135 DPTSCVFASTTRDH-----------PIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVF  199 (279)
Q Consensus       135 ~~~~~~l~s~~~d~-----------~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~  199 (279)
                      ..++++++.|+.+.           .+.+||+.+++...  .+.....    ......++.+++++++.|  ....+.+|
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~----~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD----MFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC----CSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc----cceeEEEEecCCcEEEeecCCCcceeEe
Confidence            45777888776421           36789999876433  2222211    133467888999998866  44689999


Q ss_pred             EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC------CcEEEEecCCCe
Q 023672          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNME  256 (279)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d------g~i~~wd~~~~~  256 (279)
                      |..+.  ........    .. ...-..++..+ ++.+++.|+.+      ..+.+||..+.+
T Consensus       104 d~~~~--~w~~~~~~----~~-~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         104 DSSSD--SWIPGPDM----QV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EGGGT--EEEECCCC----SS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cCccC--cccccccc----cc-cccccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence            99873  11221111    11 12234567777 78888888753      358899987764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.89  E-value=0.091  Score=42.19  Aligned_cols=30  Identities=13%  Similarity=0.108  Sum_probs=26.1

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .+.++++|+.||.++.+|.++|+.+-+++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            556888899999999999999999987764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.89  E-value=0.31  Score=39.05  Aligned_cols=81  Identities=11%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceE
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (279)
                      |.|.-+|+.+|+.+.......      ++..-.++..+.++++| .|+.++.+|.+++ +   .+..+......+..+  
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~------p~~~g~lstagglVF~Gt~dg~l~A~Da~TG-e---~LW~~~~~~~~~~~P--  533 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-K---ELWKFQTGSGIVSPP--  533 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTC-C---EEEEEECSSCCCSCC--
T ss_pred             CeEEEEcCCCCcEEeecCCCC------CCccceeEEcCCeEEEeCCCCeEEEEECCCC-c---EeEEEECCCCccccC--
Confidence            578889999999888877554      33322234456677777 8999999999995 3   333332222233333  


Q ss_pred             EEEEccCCCcEEEEE
Q 023672          227 AIAFSPTHTGMLAIG  241 (279)
Q Consensus       227 ~~~~sp~~~~~l~~~  241 (279)
                       +.|..++.++++..
T Consensus       534 -~ty~~~G~qYv~i~  547 (582)
T d1flga_         534 -ITWEQDGEQYLGVT  547 (582)
T ss_dssp             -EEEEETTEEEEEEE
T ss_pred             -EEEEECCEEEEEEE
Confidence             45666344565544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.86  E-value=0.31  Score=38.83  Aligned_cols=51  Identities=10%  Similarity=0.173  Sum_probs=37.1

Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      |.|.-+|+.+++.+.......      ...+-.+.-.+.++++| .|+.++.+|.+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~------~~~gg~l~TagglVF~G~~dg~l~A~Da~tG  489 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG  489 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             cceEEEeCCCCeEeeeccCCC------CCCCceeEECCCEEEEECCCCcEEEEECCCC
Confidence            568889999999988877554      22222333345677766 9999999999995

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.85  E-value=0.23  Score=37.17  Aligned_cols=166  Identities=12%  Similarity=0.029  Sum_probs=88.9

Q ss_pred             eEEEEEccCCCeEEEeeCCC-----------eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672           63 LKGIKWSPDGSSFLTSSEDK-----------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (279)
Q Consensus        63 v~~~~~~~~~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (279)
                      +.......+|+.++.|+.+.           .+.+||..++......              .....+.......      
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------------~~~~~~~~~~~~~------   81 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------------VTVTKHDMFCPGI------   81 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------------EEECSCCCSSCEE------
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--------------CCCCCcccceeEE------
Confidence            34444556888888777421           3678999876442110              0111111111111      


Q ss_pred             cccCCCCcEEEEecCC-CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC------CeEEEEEccC
Q 023672          132 SASDPTSCVFASTTRD-HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDVHR  203 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~~~d~~~  203 (279)
                       ++.+++.+++.|+.+ ..+.+||..+......-.....    ..-...+..++|++++.| .+      ..+.+||..+
T Consensus        82 -~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~----r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          82 -SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             -EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC----CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             -EEecCCcEEEeecCCCcceeEecCccCccccccccccc----ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence             346788898888655 5899999988765432211111    133467778899888854 22      4689999987


Q ss_pred             CCCceeeeeecccc---cCCCC-----CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672          204 PGRDFEKYSTLKGN---KEGQA-----GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (279)
Q Consensus       204 ~~~~~~~~~~~~~~---~~~~~-----~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~  256 (279)
                      ..  ..........   ...+.     ..-..+...+ ++.+++.+...+.+.++|..+..
T Consensus       157 ~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         157 KT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCE
T ss_pred             Cc--eeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCc
Confidence            31  1111111000   00000     0111122334 67777777777777777776654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.78  E-value=0.13  Score=39.51  Aligned_cols=97  Identities=10%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             ccCCCCcEEEEe-cCC----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC-------------
Q 023672          133 ASDPTSCVFAST-TRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-------------  193 (279)
Q Consensus       133 ~~~~~~~~l~s~-~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d-------------  193 (279)
                      .++|++++++.+ +.+    ..|+++|+.+++.+..... ..     ....+.|.++++.|+ +..+             
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~-----~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cc-----cccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            348899988754 223    3699999999987643221 11     234789999998776 4322             


Q ss_pred             ---CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEE
Q 023672          194 ---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI  240 (279)
Q Consensus       194 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~  240 (279)
                         ..|..+.+.++...-..+...    ......+..+..++ ++.+++.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e----~d~~~~~~~~~~s~-d~~~l~i  249 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEF----PDEPKWMGGAELSD-DGRYVLL  249 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECC----TTCTTCEEEEEECT-TSCEEEE
T ss_pred             CCcceEEEEECCCCcccccccccc----ccCCceEEeeeccC-CcceeeE
Confidence               257788887642222222111    12234566778888 7776654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.75  E-value=0.21  Score=39.95  Aligned_cols=51  Identities=10%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      |.|.-||+.+++.+...+....      ...-...-.+.++++| .|+.++.+|.+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p------~~gg~lstagglVF~G~~dg~l~A~Da~TG  508 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccEEEeCCCCCceEeeecCCCC------CCCceEEEcCCEEEEECCCCeEEEEECCCC
Confidence            3577899999998887765432      1222233356677776 9999999999995

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.2  Score=35.61  Aligned_cols=178  Identities=9%  Similarity=0.080  Sum_probs=99.3

Q ss_pred             CCCceEEEEEccCCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      +...+.+|+|++..+.|+-+ ..++.|...+++......                 +....-.....+       +++.-
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-----------------v~~~~~~~p~~i-------AvD~~   89 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-----------------IIRQDLGSPEGI-------ALDHL   89 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-----------------EECTTCCCEEEE-------EEETT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-----------------EEEeccccccEE-------EEecc
Confidence            34457889999877766644 456788888887432210                 111111233333       33444


Q ss_pred             CcEEE-EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCe--EEEEEccCCCCceeeee
Q 023672          138 SCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKS--VRVFDVHRPGRDFEKYS  212 (279)
Q Consensus       138 ~~~l~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~--i~~~d~~~~~~~~~~~~  212 (279)
                      +..|+ +-...+.|.+.++........+.....     .+..++++|...+++..  ..+.  |..-++..  .....+.
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~-----~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG--~~~~~i~  162 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV-----NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRILA  162 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-----SEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEEE
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEeccccc-----CCcEEEEecccCcEEEeecCCCCcEEEEecCCC--CCceeee
Confidence            44554 445567899999876544332322212     56799999988777733  2223  44445543  2222221


Q ss_pred             ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL  274 (279)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  274 (279)
                            ...-.....+++++.++.+..+-...+.|...|+........+.+.. ...+|++.
T Consensus       163 ------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~  217 (263)
T d1npea_         163 ------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY  217 (263)
T ss_dssp             ------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE
T ss_pred             ------eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE
Confidence                  11223567899998444444555667889989987655444444433 34566654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.21  Score=35.47  Aligned_cols=130  Identities=12%  Similarity=0.019  Sum_probs=73.9

Q ss_pred             CCCCcEEEEe-cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672          135 DPTSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (279)
Q Consensus       135 ~~~~~~l~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~  211 (279)
                      ++..+.|+.+ ..++.|...++..+.....+...-.     .+.++++..-+..|+ +. ..+.|.+.++....  ...+
T Consensus        44 D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~-----~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~--~~~l  116 (263)
T d1npea_          44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG-----SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL  116 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC-----CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE
T ss_pred             EeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc-----cccEEEEeccCCeEEEeccCCCEEEEEecCCce--EEEE
Confidence            4445555554 5567788888876654444433222     567899987776776 44 67899999987521  1111


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE--ecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVSKLSSA  277 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~spdg  277 (279)
                        +    ......+..++++|..+.++.+-...+..+|+  ++............-..+.+|++.+.+
T Consensus       117 --~----~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~  178 (263)
T d1npea_         117 --F----DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS  178 (263)
T ss_dssp             --E----CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred             --e----cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecC
Confidence              1    12234578999999455444443322333444  554333332232223456788887654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.48  E-value=0.19  Score=40.24  Aligned_cols=51  Identities=20%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~  204 (279)
                      |.|.-+|+.+++.+........      ..+-.+.-.+.+++++ .|+.++.+|.+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~------~~~g~l~TagglVf~G~~dg~l~A~Da~tG  495 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATLDGYLKALDNKDG  495 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccEEEeccCCCceeeEcCCCCC------CCcceeEecCCEEEEECCCCeEEEEECCCC
Confidence            4688899999998877765432      1111222235566666 9999999999995

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.47  E-value=0.14  Score=40.99  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .+.+++.|+.||.++-+|.++|+.+-+++.
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            456888899999999999999999987764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.92  E-value=0.42  Score=34.46  Aligned_cols=174  Identities=14%  Similarity=0.160  Sum_probs=99.7

Q ss_pred             EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec
Q 023672           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT  145 (279)
Q Consensus        66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~  145 (279)
                      .-.+|..+.||.=+ ..++.|||+++......                  ..-.++|.-..|-      +++  .|+..+
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks------------------~~~~e~VvfWkWi------s~~--~L~lVT  120 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------------HTMTDDVTFWKWI------SLN--TVALVT  120 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEE------------------EECSSCCCEEEES------SSS--EEEEEC
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhce------------------EEcCCCcEEEEec------CCC--EEEEEc
Confidence            34568777777554 56899999997644211                  1122355555661      222  444443


Q ss_pred             CCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE-Ee---cC----CeEEEEEccCCC-----------
Q 023672          146 RDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YN----KSVRVFDVHRPG-----------  205 (279)
Q Consensus       146 ~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d----~~i~~~d~~~~~-----------  205 (279)
                       +..|+-|+++.. .+.+.+..+..... ..|..-..+++.++++ +|   .+    |.+.+|..+...           
T Consensus       121 -~taVYHW~~~g~s~P~k~fdR~~~L~~-~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F  198 (327)
T d1utca2         121 -DNAVYHWSMEGESQPVKMFDRHSSLAG-CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF  198 (327)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGTT-CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEE
T ss_pred             -CCceEEEcccCCCCchhhhhhcccccC-ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeee
Confidence             456888998542 45566655554322 2555666677777665 33   22    456667665420           


Q ss_pred             ---------------------------------------Cceee-eeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672          206 ---------------------------------------RDFEK-YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (279)
Q Consensus       206 ---------------------------------------~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg  245 (279)
                                                             .++.. ...+........+...++..|+ .-.++..-+.-|
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G  277 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYG  277 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTS
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCc
Confidence                                                   00000 0001001112234455777777 666788888899


Q ss_pred             cEEEEecCCCeEEEEEeecCCCEE
Q 023672          246 TSAIYREDNMELLYVLHGQEGGVT  269 (279)
Q Consensus       246 ~i~~wd~~~~~~~~~~~~~~~~v~  269 (279)
                      .|++||+.++.+++.-+-...+|.
T Consensus       278 ~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         278 YIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEEEcccccEEEEeecCCCceE
Confidence            999999999998876665555554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.85  E-value=0.2  Score=40.20  Aligned_cols=30  Identities=7%  Similarity=0.086  Sum_probs=26.5

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .+.++++|+.||.++-+|.++|+.+-+++.
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            566888899999999999999999988774

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.57  E-value=0.3  Score=39.33  Aligned_cols=30  Identities=13%  Similarity=0.149  Sum_probs=26.2

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672          234 HTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (279)
Q Consensus       234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  263 (279)
                      .+.+++.|+.||.++-+|.++|+.+-++..
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            456788899999999999999999987764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.48  E-value=0.91  Score=36.39  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceE
Q 023672          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (279)
Q Consensus       148 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (279)
                      |.|.-||+.+++.+.......      ++.+-.++..+.+++.| .|+.++.+|.+++ +.+   ..+......+..+  
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~------~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG-e~L---W~~~~~~~~~a~P--  520 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF------AVWGGTMATAGDLVFYGTLDGYLKARDSDTG-DLL---WKFKIPSGAIGYP--  520 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEE---EEEECSSCCCSCC--
T ss_pred             ceEEEEeCCCCceecccCCCC------CCccceeEecCCEEEEECCCCeEEEEECCCC-cEe---eEEECCCCcccCC--
Confidence            568889999998877665433      22222233456677767 9999999999995 333   3332221233333  


Q ss_pred             EEEEccCCCcEEEEE
Q 023672          227 AIAFSPTHTGMLAIG  241 (279)
Q Consensus       227 ~~~~sp~~~~~l~~~  241 (279)
                       +.|..++.++++..
T Consensus       521 -~tY~~dGkQYvav~  534 (596)
T d1w6sa_         521 -MTYTHKGTQYVAIY  534 (596)
T ss_dssp             -EEEEETTEEEEEEE
T ss_pred             -eEEEECCEEEEEEE
Confidence             34555355566543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.21  E-value=0.71  Score=34.05  Aligned_cols=143  Identities=12%  Similarity=0.072  Sum_probs=77.9

Q ss_pred             cccCCCCcEEEEecC------------CCcEEEEECCCCeeeE-EEeccCc-c-ccccceeeEEE--CCCCCE-EE-E--
Q 023672          132 SASDPTSCVFASTTR------------DHPIHLWDATTGLLRC-TYRAYDA-V-DEITAAFSVAF--NPTGTK-IF-A--  190 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~------------d~~i~i~d~~~~~~~~-~~~~~~~-~-~~~~~v~~~~~--~~~~~~-l~-~--  190 (279)
                      +++.|+|..+++++.            .|.|.++|+.+.+... .+..... . ...-....+.+  .+++.. |+ +  
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            344677776666532            4889999997754322 2221111 0 00012234443  455653 33 3  


Q ss_pred             -ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe--C-------------CCcEEEEecCC
Q 023672          191 -GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--Y-------------SQTSAIYREDN  254 (279)
Q Consensus       191 -~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~--~-------------dg~i~~wd~~~  254 (279)
                       +...+|.+|++...+.......++.   .......+.+++.. ++.+++|-.  .             -+...+|....
T Consensus       120 ~~~~~~ieif~~~~~~~~l~~~~~v~---~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         120 PGSSSTVEVFKFQEEEKSLLHLKTIR---HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEEC---CTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             cCCCceeEEEEEeCCCCeEEEEeecC---CccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence             2456899999976544444443432   22234578999988 788888831  1             12234444444


Q ss_pred             CeEEEEEeecCCCEEEEEEccCCCC
Q 023672          255 MELLYVLHGQEGGVTHVSKLSSAYT  279 (279)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~spdg~~  279 (279)
                      ++......+ -...++++++||+++
T Consensus       196 ~~~~~~~~~-l~~pNGI~~s~d~~~  219 (340)
T d1v04a_         196 NDVRVVAEG-FDFANGINISPDGKY  219 (340)
T ss_dssp             SCEEEEEEE-ESSEEEEEECTTSSE
T ss_pred             CceEEEcCC-CCccceeEECCCCCE
Confidence            443322332 345799999999874

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.14  E-value=0.75  Score=34.06  Aligned_cols=139  Identities=7%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC---CeEEEEEccCCCCcee
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN---KSVRVFDVHRPGRDFE  209 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d---~~i~~~d~~~~~~~~~  209 (279)
                      .|+..+++.....+-|.+||+. |+.+..+.... .....-...+.+.....-++ ++ .+   ..|.+|.+......+.
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr-~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK-LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETT-CCEEEECCSSC-EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CcCccEEEEEcCcCCEEEEcCC-CcEEEecccCC-cCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            4455677766777679999985 77776664321 11111122223333333333 44 32   3688888864322222


Q ss_pred             eeeecccccCCCCCceEEEEE--ccCCCc-EEEEEeCCCcEEEEecC---CC----eEEEEEeecCCCEEEEEEccC
Q 023672          210 KYSTLKGNKEGQAGIMSAIAF--SPTHTG-MLAIGSYSQTSAIYRED---NM----ELLYVLHGQEGGVTHVSKLSS  276 (279)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~--sp~~~~-~l~~~~~dg~i~~wd~~---~~----~~~~~~~~~~~~v~~~~~spd  276 (279)
                      .+.........-...++.+|+  +|.++. +++....+|.+..|.+.   .+    +++..+.. ...+.++.+.+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCC
Confidence            221111000111224667777  664454 56667778988888763   23    23444542 345666666654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.77  Score=32.43  Aligned_cols=183  Identities=7%  Similarity=-0.011  Sum_probs=98.0

Q ss_pred             CCCceEEEEEccCCCeEEEe-eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672           59 PNNFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (279)
Q Consensus        59 h~~~v~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (279)
                      ....+.+++|++..+.|+-+ ..++.|.-.+++.......             ...+....-       ..|..+++++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~-------------~~~~~~~~~-------~~p~glAvD~~   87 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------YDTVISRDI-------QAPDGLAVDWI   87 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------CEEEECSSC-------SCCCEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc-------------eEEEEeCCC-------CCcceEEEeec
Confidence            34457889999877766644 3466676666653211000             000111111       12233344544


Q ss_pred             CcEEEEe-cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCceeeeee
Q 023672          138 SCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYST  213 (279)
Q Consensus       138 ~~~l~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~~~~~~~  213 (279)
                      +..|+.+ ...+.|.+.++........+.....     .+..++++|...+++ +.  ..+.|.-.++..  .....+  
T Consensus        88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~-----~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--s~~~~l--  158 (266)
T d1ijqa1          88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSL--  158 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEEEE--
T ss_pred             cceEEEEecCCCEEEeEecCCceEEEEEcCCCC-----CcceEEEEcccCeEEEeccCCCcceeEeccCC--Cceecc--
Confidence            4445444 5567899999886654444443322     567899999776666 43  445666666654  222221  


Q ss_pred             cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC--CCEEEEEEc
Q 023672          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVSKL  274 (279)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s  274 (279)
                      .    ...-.....+++++.++.+..+-...+.|...|+........+....  ....+|++.
T Consensus       159 ~----~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~  217 (266)
T d1ijqa1         159 V----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF  217 (266)
T ss_dssp             E----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             c----ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE
Confidence            1    11224567899998444555555667888888886554333333222  234556654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.59  E-value=0.66  Score=31.57  Aligned_cols=155  Identities=10%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      -.|.+++.. +.+...+|+......+|-++.++.........+     .+   +.--.+..|..+.+      +.++.+.
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpF-----sF---VtDI~~d~I~G~g~------~~g~~~s  168 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGF-----GF---VSDIRGDLIAGLGF------FGGGRVS  168 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSC-----EE---EEEEETTEEEEEEE------EETTEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCc-----ce---EEeccCCeEEEEee------ecCCcce
Confidence            345555554 334566888878889999988765332211111     00   11111223333322      1222223


Q ss_pred             EEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe----cCCeEEEEEccCCCCceeeeeecc
Q 023672          141 FASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNKSVRVFDVHRPGRDFEKYSTLK  215 (279)
Q Consensus       141 l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~~~d~~~~~~~~~~~~~~~  215 (279)
                      ++++.. .|.+++++...|                .+....+.+..+. +++    ......-+|++.+.  .+.+ .+.
T Consensus       169 fF~adl~SG~lri~tpkeG----------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~--yerv-e~P  228 (313)
T d2hu7a1         169 LFTSNLSSGGLRVFDSGEG----------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS--VEDL-ELP  228 (313)
T ss_dssp             EEEEETTTEEEEEECCSSE----------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC--EEEC-CCS
T ss_pred             EEEEecccCCEEEecCCCC----------------cccceeEccCcee-eeccCCCCceEEEEEecccCc--eeee-ecC
Confidence            344433 445555554433                4444555555554 322    11222244776521  1111 110


Q ss_pred             -ccc-CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672          216 -GNK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (279)
Q Consensus       216 -~~~-~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd  251 (279)
                       ..+ .-..-.|.=+-+.| ++.+++.+-.||.-++++
T Consensus       229 ~kd~~sy~p~~I~~~~Y~P-dd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         229 SKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             SCHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEE
T ss_pred             cccceeecceEEEeeeeCC-CCcEEEEEecCCchheee
Confidence             000 00112344566899 888888999999988886

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.45  E-value=1.2  Score=33.97  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=25.8

Q ss_pred             CCCCceEEEEEccCCCeEEEe-e----CCCeEEEEeCCCCcc
Q 023672           58 IPNNFLKGIKWSPDGSSFLTS-S----EDKTLRIFSLPENGI   94 (279)
Q Consensus        58 ~h~~~v~~~~~~~~~~~l~t~-~----~dg~i~iwd~~~~~~   94 (279)
                      ++.-.+...+++||++++|.+ +    .--.++++|+.+++.
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            344445677889999988732 2    234689999998754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.38  E-value=1  Score=33.24  Aligned_cols=115  Identities=9%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             EEEEecCCCcEEEEECC---CC----eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCc-eee
Q 023672          140 VFASTTRDHPIHLWDAT---TG----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD-FEK  210 (279)
Q Consensus       140 ~l~s~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~-~~~  210 (279)
                      +++....+|.+..|.+.   .+    +.++.+....      .+..|.+.+....|+.+ .+..|+.++....... ...
T Consensus       145 ~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~------q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~  218 (353)
T d1h6la_         145 YAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS------QTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTV  218 (353)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS------CEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEE
T ss_pred             EEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC------ccceEEEeCCCCcEEEecCccceEEEEeccCCCcccee
Confidence            45666778888877663   23    3344454433      67899999998899888 7777776766532111 111


Q ss_pred             eeecccccCCCCCceEEEEEcc---CCCcEEEEEeCCCcEEEEecCCC-eEEEEEe
Q 023672          211 YSTLKGNKEGQAGIMSAIAFSP---THTGMLAIGSYSQTSAIYREDNM-ELLYVLH  262 (279)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp---~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~  262 (279)
                      +....  .......+-.++.-.   ..|.+|+|.-.+++..+||..+. +.+..|.
T Consensus       219 i~~~~--g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         219 IDRAD--GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEECS--SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             eeccc--CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            11111  012345666776543   13456666667888999998764 6666654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.50  E-value=1.3  Score=31.91  Aligned_cols=118  Identities=8%  Similarity=0.074  Sum_probs=75.8

Q ss_pred             CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeec
Q 023672          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (279)
Q Consensus       135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~  214 (279)
                      +|..+.||.-+ ..++.++|+++.+.++.+....      .|.--.|-.+ +.|+--.+..|+-|++.....+.+.. ..
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~~e------~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k~f-dR  141 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMF-DR  141 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEEEE-EC
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC------CcEEEEecCC-CEEEEEcCCceEEEcccCCCCchhhh-hh
Confidence            67777777666 5689999999999998888777      5555566544 34544466789999997543443332 22


Q ss_pred             ccccCCCCCceEEEEEccCCCcEEEEEe-------CCCcEEEEecCCCeEEEEEeecC
Q 023672          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS-------YSQTSAIYREDNMELLYVLHGQE  265 (279)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~  265 (279)
                      ...+  ....|..-..++ +..+++..+       -.|.+.||....+. .+.+++|.
T Consensus       142 ~~~L--~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGha  195 (327)
T d1utca2         142 HSSL--AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA  195 (327)
T ss_dssp             CGGG--TTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSE
T ss_pred             cccc--cCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccccee
Confidence            2221  245677788888 777766432       24568899876542 34455553

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=1.9  Score=32.21  Aligned_cols=142  Identities=14%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (279)
Q Consensus        62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (279)
                      .|..++|+-+  .|+... ++.+..++...-....                 ....-..++..+.+.|.         .+
T Consensus        88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~p~---------~~  138 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFR-----------------TVTSFEKPVFQLKNVNN---------TL  138 (381)
T ss_dssp             TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEE-----------------EEEECSSCEEEEEECSS---------EE
T ss_pred             CeEEEEeeCC--EEEEEe-CCCEEEEEeecccccc-----------------ccccccccccceecCCc---------ee
Confidence            4788899744  455443 5567777776421100                 11112345677766443         55


Q ss_pred             EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEE-EccCCCCceeeeeecccccCC
Q 023672          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF-DVHRPGRDFEKYSTLKGNKEG  220 (279)
Q Consensus       142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~-d~~~~~~~~~~~~~~~~~~~~  220 (279)
                      +....++.+.++++..++................+.+++|++.|+.++++.++...+- ++...       ..+... ..
T Consensus       139 ~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~-------~~~~~p-~~  210 (381)
T d1xipa_         139 VILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLP-------SELEEL-PV  210 (381)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-------HHHHTS-CT
T ss_pred             EEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCc-------cccCCC-cC
Confidence            6667788999999988764433221111111225678888888887776633332221 22110       111111 12


Q ss_pred             CCCceEEEEEccCCCcEEEEE
Q 023672          221 QAGIMSAIAFSPTHTGMLAIG  241 (279)
Q Consensus       221 ~~~~v~~~~~sp~~~~~l~~~  241 (279)
                      ....|.++.|-. +..++++-
T Consensus       211 ~~~~v~sI~WL~-~~~F~vvy  230 (381)
T d1xipa_         211 EEYSPLSVTILS-PQDFLAVF  230 (381)
T ss_dssp             TTSEEEEEEESS-SSEEEEEE
T ss_pred             CCcceeEEEEec-CceEEEEE
Confidence            344688899877 65666543

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=90.50  E-value=1.6  Score=29.04  Aligned_cols=136  Identities=10%  Similarity=0.013  Sum_probs=70.0

Q ss_pred             cccCCCCcEEEEecCCCcEEEEECCCCeee-----EEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCC
Q 023672          132 SASDPTSCVFASTTRDHPIHLWDATTGLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR  206 (279)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~  206 (279)
                      ++|+|++.+.++-.  +.+..=.+.+....     .+......-   ....-+.|+|.|-+.++. ++  .+|.-..+..
T Consensus        45 i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggW---n~FkflffdP~G~LyaVt-~~--~LYr~~pPtn  116 (235)
T d1tl2a_          45 LFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGW---NQFQFLFFDPNGYLYAVS-KD--KLYKASPPQS  116 (235)
T ss_dssp             EEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCG---GGCSEEEECTTSCEEEEE-TT--EEEEESCCCS
T ss_pred             EEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcc---cceEEEEECCCceEEEec-Cc--ceecCCcCcc
Confidence            35688888776653  24443333322111     111111111   145678999999887766 45  4554433221


Q ss_pred             ceeee-eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe------EEEEEe-ecCCCEEEEEEccCCC
Q 023672          207 DFEKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLH-GQEGGVTHVSKLSSAY  278 (279)
Q Consensus       207 ~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~-~~~~~v~~~~~spdg~  278 (279)
                      ..... ......-...-..+..+-|.| +|.+.++ ..| .+.-+...++.      .-..+. ++-....-+.|+|||.
T Consensus       117 ~~q~W~g~a~~vG~~gw~df~~lFFdP-~G~LYaV-~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~  193 (235)
T d1tl2a_         117 DTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAV-HGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  193 (235)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEE-ETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             cchhhhhhhhhhccCCcCceeEEEECC-CceEEEE-ECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc
Confidence            11110 000000012234577889999 8877766 334 46666654432      122333 4555678899999985

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.04  E-value=2.8  Score=31.25  Aligned_cols=153  Identities=9%  Similarity=0.009  Sum_probs=80.6

Q ss_pred             CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (279)
Q Consensus        61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (279)
                      ...+-++.++...+|+.|+.++ +.|..+..-+....     .......+......   ..|..+++       +.+  .
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~-----~~~~~~~~~~~~~i---p~v~~vaf-------s~d--~   98 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT-----SDSTPLTFKWEKEI---PDVIFVCF-------HGD--Q   98 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH-----SSSCCCCCSEEEEC---TTEEEEEE-------ETT--E
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhh-----ccCCCCcceeccCC---CCeEEEEe-------eCC--E
Confidence            4467788888777888888775 66766532110000     00001111111111   24555655       323  4


Q ss_pred             EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCC
Q 023672          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (279)
Q Consensus       141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  220 (279)
                      ++.. .++.+..++..+-...........     ++..+.++|.. .++...++.+.++++.... ..........  ..
T Consensus        99 l~v~-~~~~l~~~~~~~l~~~~~~~~~~~-----~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~-~~~~~~~v~~--~~  168 (381)
T d1xipa_          99 VLVS-TRNALYSLDLEELSEFRTVTSFEK-----PVFQLKNVNNT-LVILNSVNDLSALDLRTKS-TKQLAQNVTS--FD  168 (381)
T ss_dssp             EEEE-ESSEEEEEESSSTTCEEEEEECSS-----CEEEEEECSSE-EEEEETTSEEEEEETTTCC-EEEEEESEEE--EE
T ss_pred             EEEE-eCCCEEEEEeeccccccccccccc-----cccceecCCce-eEEEecCCCEEEEEeccCc-cccccCCcce--EE
Confidence            5444 345677777766433333332222     66788888753 3335588999999998742 2111100000  01


Q ss_pred             CCCceEEEEEccCCCcEEEEEe
Q 023672          221 QAGIMSAIAFSPTHTGMLAIGS  242 (279)
Q Consensus       221 ~~~~v~~~~~sp~~~~~l~~~~  242 (279)
                      -.+.+.+++|++ ++..++++.
T Consensus       169 ~~~~~~~v~ws~-kgkq~v~~~  189 (381)
T d1xipa_         169 VTNSQLAVLLKD-RSFQSFAWR  189 (381)
T ss_dssp             ECSSEEEEEETT-SCEEEEEEE
T ss_pred             ecCCceEEEEeC-CcEEEEEeC
Confidence            124578889988 888787774

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.51  E-value=3  Score=28.34  Aligned_cols=24  Identities=0%  Similarity=0.068  Sum_probs=18.2

Q ss_pred             CCCeEEEeeCCCeEEEEeCCCCcc
Q 023672           71 DGSSFLTSSEDKTLRIFSLPENGI   94 (279)
Q Consensus        71 ~~~~l~t~~~dg~i~iwd~~~~~~   94 (279)
                      +.+.|+++...|.+.++-+..++.
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~   48 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGET   48 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEE
Confidence            344777887899999998876644

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.70  E-value=1.6  Score=33.50  Aligned_cols=53  Identities=6%  Similarity=0.021  Sum_probs=38.8

Q ss_pred             CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE--EEe------ecCCCEEEEEEccC
Q 023672          223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLH------GQEGGVTHVSKLSS  276 (279)
Q Consensus       223 ~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~------~~~~~v~~~~~spd  276 (279)
                      ...++|+|.| ++.+|++--..|.|++++..+++...  .+.      .-.+...+|+|+|+
T Consensus        27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3577999999 88888877567999999987775432  221      11357889999996

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=84.82  E-value=3.9  Score=27.13  Aligned_cols=151  Identities=11%  Similarity=0.076  Sum_probs=72.8

Q ss_pred             CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC-cccccCCCC
Q 023672           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP-HMSASDPTS  138 (279)
Q Consensus        60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  138 (279)
                      -..+.-|+|+|+|++.++-.  +.+..=.+.+...            .      ........|-+..|.. ..+.|+|+|
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~n------------q------~wf~~atrIG~ggWn~FkflffdP~G   98 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDN------------D------NWMGRAKKIGNGGWNQFQFLFFDPNG   98 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEET--TEEEEESCCCSTT------------C------CHHHHCEEEECSCGGGCSEEEECTTS
T ss_pred             ccceeEEEECCCCcEEEEEC--CeEEECCCCCcch------------H------HHHHhhhhcccCcccceEEEEECCCc
Confidence            34577799999999776553  2333322221100            0      1111122333333322 123468888


Q ss_pred             cEEEEecCCCcEEEEECCCCeee-----EEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCc--eeee
Q 023672          139 CVFASTTRDHPIHLWDATTGLLR-----CTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD--FEKY  211 (279)
Q Consensus       139 ~~l~s~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~--~~~~  211 (279)
                      -+-++.  ++.++-=...+.++.     .........   ..+..+-|.|+|.+.++-.| .+.-+..-++...  +..-
T Consensus        99 ~LyaVt--~~~LYr~~pPtn~~q~W~g~a~~vG~~gw---~df~~lFFdP~G~LYaV~~~-~l~k~~pP~~~~d~WL~~s  172 (235)
T d1tl2a_          99 YLYAVS--KDKLYKASPPQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVHGQ-QFYKALPPVSNQDNWLARA  172 (235)
T ss_dssp             CEEEEE--TTEEEEESCCCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEETT-EEEEECCCSSTTCCHHHHC
T ss_pred             eEEEec--CcceecCCcCcccchhhhhhhhhhccCCc---CceeEEEECCCceEEEEECC-cEEEcCCCCCCCchhhhhh
Confidence            655555  354432222222211     111111111   15668999999988777544 4555554331110  0011


Q ss_pred             eecccccCCCCCceEEEEEccCCCcEEEE
Q 023672          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAI  240 (279)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~  240 (279)
                      ..+.   .++-....-+.|+| ++.+..+
T Consensus       173 t~ig---r~~w~~~~fi~Fs~-dG~L~~v  197 (235)
T d1tl2a_         173 TKIG---QGGWDTFKFLFFSS-VGTLFGV  197 (235)
T ss_dssp             EEEE---SSSGGGEEEEEECT-TSCEEEE
T ss_pred             hhhc---cCcccCceEEEECC-CCcEEEE
Confidence            1121   24455567899999 8877665