Citrus Sinensis ID: 023686

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28

MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML

ccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEccccHHHHHHHHccccccccccEEEEccccccccccHHHHHHHHHcccccccEEEcHHHHHHHHHHccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEcccccEEEEEEEccEEEEcccccccccHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHccccEEEccccEEEEEEc

ccccccccccccccccccccccccccHccccccccccccEEEEEEEEcccccEEEEEEccHHHHHHHHHHcHHcccccEcEEEEEcccHHHHccHHHHHHHHHHccccccEEccHHHHHHHHHHcccEEEcccccccccccccEEEEcccccEEEccEEEEEEEccccccccEEEEEEccEEEEccHccccHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHccccccccccccEEccccEEEEEEc

mgtgtsegiprvscltnpskkcpvctkavepgnknrrlNTSILirypgpsgrrnilidagkffyhsalrwfpaygirtiDAVIITHshadaigglddlrdwtnnvQRHIPIYVAMRDFEVMKKTHYYLvdtsgiipgaavselqfniideepftvqdlkitplpvwhgagyrslgfrfgnicyisdvseipeetypflqdCEILIMdalrpdrsssthfglprALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETegldvqlsydglrvpvml

mgtgtsegiprvscltnpskkcpvctkavepgnknrrlntsilirypgpsgrrNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSssthfglpraleevrkiqPKRTLFIGMMHLMDHEKVNEELLKLMETegldvqlsydglrvpvml

*********************CPVCTKAV******RRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALR********FGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLR*****

****TSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		278	2.2.26 [Sep-21-2011]
O74545		301	Putative hydrolase C777.0	yes	no	0.956	0.883	0.384	2e-47
Q7MUY1		492	Octanoyltransferase OS=Po	yes	no	0.895	0.506	0.293	5e-23
P16692		252	Protein PhnP OS=Escherich	N/A	no	0.812	0.896	0.257	2e-07
Q95Q18		295	Beta-lactamase-like prote	yes	no	0.348	0.328	0.342	4e-05

>sp\|O74545\|YCV6_SCHPO Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1	Back alignment and function desciption

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 165/289 (57%), Gaps = 23/289 (7%)

Query: 1   MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEP-GNKNRRLNTSILIRYPGPSGRR--NILI 57
           MGTG S GIP V CLT     C  C  ++ P G KN R NTS+L++    SG R  NILI
Sbjct: 11  MGTGCSSGIPNVCCLTLEKPTCRTCLASLTPEGRKNNRFNTSVLLQVDDGSGDRPKNILI 70

Query: 58  DAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWT-NNVQRHIPIYVAMR 116
           D GK FY SAL+ F  + IR +DAVI+TH HADAI G+DDLR+WT   +Q  + IY+  R
Sbjct: 71  DCGKHFYVSALKHFVEHKIRYLDAVILTHDHADAINGMDDLREWTLGFLQPSVKIYLTER 130

Query: 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKI--TPLPVWHGA---- 169
            ++V++++  Y+V+      G +V    F++   ++PF + D+ I  TPLPV HG     
Sbjct: 131 TYKVIERSFPYMVNAKNATGGGSVPTFDFHVFSPDKPFKLDDIDISVTPLPVHHGVYFIE 190

Query: 170 -----GYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRA 224
                 Y  +GFR G++ YISD + +P  T   ++   ++++DAL+ +   S HF   +A
Sbjct: 191 GKESQTYFCMGFRVGDMSYISDCNYVPPTTKKLMEGSNVVVVDALKHEPYPS-HFSFKQA 249

Query: 225 LEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDG 271
            E +  ++  P R L+ G  H ++H +  +EL  L     +  + +YDG
Sbjct: 250 EEFIASLEHVPSRVLYTGFSHKVEHNETVKELSVLK----VPTEPAYDG 294

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|Q7MUY1\|LIPB_PORGI Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|P16692\|PHNP_ECOLI Protein PhnP OS=Escherichia coli (strain K12) GN=phnP PE=1 SV=1	Back alignment and function description

>sp\|Q95Q18\|LACB2_CAEEL Beta-lactamase-like protein 2 homolog OS=Caenorhabditis elegans GN=Y53F4B.39 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
255572929		346	catalytic, putative [Ricinus communis] g	1.0	0.803	0.895	1e-146
449458165		357	PREDICTED: putative hydrolase C777.06c-l	1.0	0.778	0.870	1e-144
224135033		314	predicted protein [Populus trichocarpa]	1.0	0.885	0.870	1e-142
297829934		359	metallo-beta-lactamase family protein [A	1.0	0.774	0.838	1e-139
225442301		350	PREDICTED: putative hydrolase C777.06c [	1.0	0.794	0.856	1e-138
42564134		361	metallo-beta-lactamase family protein [A	1.0	0.770	0.831	1e-138
9294602		309	hydrolase-like protein [Arabidopsis thal	1.0	0.899	0.831	1e-137
48716734		311	hydrolase-like protein [Oryza sativa Jap	1.0	0.893	0.834	1e-137
145332379		279	metallo-beta-lactamase family protein [A	1.0	0.996	0.831	1e-137
357513653		341	Hydrolase-like protein [Medicago truncat	1.0	0.815	0.838	1e-137

>gi\|255572929\|ref\|XP_002527395.1\| catalytic, putative [Ricinus communis] gi\|223533205\|gb\|EEF34961.1\| catalytic, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/278 (89%), Positives = 261/278 (93%)

Query: 1   MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAG 60
           MGTGTSEGIPRVSCLTNP KKCPVC+KAVEPGNKNRRLNT +LIRY GP+G +NILIDAG
Sbjct: 69  MGTGTSEGIPRVSCLTNPLKKCPVCSKAVEPGNKNRRLNTGLLIRYAGPAGTQNILIDAG 128

Query: 61  KFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV 120
           KFFYHSALRWFP +G+RTIDAVIITHSHADAIGGLDDLRDWTNNVQ HIPIYVA RDFEV
Sbjct: 129 KFFYHSALRWFPTFGLRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVAERDFEV 188

Query: 121 MKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGN 180
           MKKTHYYLVDTS IIPGAAVSELQFNI+ EEPF V DLKITPLPVWHG GYRSLGFRFG 
Sbjct: 189 MKKTHYYLVDTSVIIPGAAVSELQFNIMHEEPFIVCDLKITPLPVWHGPGYRSLGFRFGK 248

Query: 181 ICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 240
           ICYISDVS+IPEETYP L+DCEILI+DALRPDRSSSTHFGLPRAL+EVRKIQPKRTLF G
Sbjct: 249 ICYISDVSDIPEETYPLLKDCEILILDALRPDRSSSTHFGLPRALDEVRKIQPKRTLFTG 308

Query: 241 MMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 278
           MMHLMDHEKVNE LLKLME+EGLDVQLSYDGLRVPV L
Sbjct: 309 MMHLMDHEKVNEYLLKLMESEGLDVQLSYDGLRVPVTL 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449458165\|ref\|XP_004146818.1\| PREDICTED: putative hydrolase C777.06c-like [Cucumis sativus] gi\|449476657\|ref\|XP_004154798.1\| PREDICTED: putative hydrolase C777.06c-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224135033\|ref\|XP_002327550.1\| predicted protein [Populus trichocarpa] gi\|222836104\|gb\|EEE74525.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297829934\|ref\|XP_002882849.1\| metallo-beta-lactamase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297328689\|gb\|EFH59108.1\| metallo-beta-lactamase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225442301\|ref\|XP_002280465.1\| PREDICTED: putative hydrolase C777.06c [Vitis vinifera] gi\|297743093\|emb\|CBI35960.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|42564134|ref|NP_187996.2| metallo-beta-lactamase family protein [Arabidopsis thaliana] gi|62318851|dbj|BAD93913.1| hydrolase like protein [Arabidopsis thaliana] gi|63003856|gb|AAY25457.1| At3g13800 [Arabidopsis thaliana] gi|90093300|gb|ABD85163.1| At3g13800 [Arabidopsis thaliana] gi|110739543|dbj|BAF01680.1| hydrolase like protein [Arabidopsis thaliana] gi|332641895|gb|AEE75416.1| metallo-beta-lactamase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|9294602\|dbj\|BAB02903.1\| hydrolase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|48716734\|dbj\|BAD23415.1\| hydrolase-like protein [Oryza sativa Japonica Group] gi\|50726197\|dbj\|BAD33716.1\| hydrolase-like protein [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|145332379\|ref\|NP_001078146.1\| metallo-beta-lactamase family protein [Arabidopsis thaliana] gi\|332641896\|gb\|AEE75417.1\| metallo-beta-lactamase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357513653\|ref\|XP_003627115.1\| Hydrolase-like protein [Medicago truncatula] gi\|355521137\|gb\|AET01591.1\| Hydrolase-like protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
TAIR\|locus:2087974		361	AT3G13800 "AT3G13800" [Arabido	1.0	0.770	0.831	4.6e-128
POMBASE\|SPCC777.06c		301	SPCC777.06c "hydrolase (predic	0.956	0.883	0.390	1.1e-46
TAIR\|locus:2140695		303	AT4G03610 [Arabidopsis thalian	0.964	0.884	0.365	5.4e-31
TAIR\|locus:2009827		324	AT1G30300 "AT1G30300" [Arabido	0.690	0.592	0.394	2.1e-29
TIGR_CMR\|GSU_2465		251	GSU_2465 "metallo-beta-lactama	0.823	0.912	0.324	1.4e-23
UNIPROTKB\|Q5LPV6		266	SPO2743 "Uncharacterized prote	0.830	0.868	0.310	1.2e-19
TIGR_CMR\|SPO_2743		266	SPO_2743 "conserved hypothetic	0.830	0.868	0.310	1.2e-19
TIGR_CMR\|APH_1062		263	APH_1062 "metallo-beta-lactama	0.852	0.901	0.289	2.5e-19
TIGR_CMR\|ECH_0985		263	ECH_0985 "metallo-beta-lactama	0.910	0.961	0.256	1.6e-17
TIGR_CMR\|NSE_0580		264	NSE_0580 "metallo-beta-lactama	0.910	0.958	0.241	1.6e-10

TAIR\|locus:2087974 AT3G13800 "AT3G13800" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
 Identities = 232/279 (83%), Positives = 253/279 (90%)

Query:     1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAG 60
             MGTGTSEGIPRVSCLTNP K C VCTKA EPGN+NRRLNTSIL+RY  PSG  NILID G
Sbjct:    83 MGTGTSEGIPRVSCLTNPLKTCSVCTKATEPGNRNRRLNTSILVRYIRPSGTSNILIDCG 142

Query:    61 KFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV 120
             KFFYHSALRWFP +G+RT+DAV+ITHSHADAIGGLDDLRDWTNNVQ HIPIY A+RD EV
Sbjct:   143 KFFYHSALRWFPTFGLRTLDAVVITHSHADAIGGLDDLRDWTNNVQPHIPIYTAIRDLEV 202

Query:   121 MKKTHYYLVDTSGIIPGAAVSELQFNIIDEE-PFTVQDLKITPLPVWHGAGYRSLGFRFG 179
             MKKTHYYLVDTS IIPGAAVSEL+F +I E+ PF V DLKITPLPVWHG+ YRSLGFRFG
Sbjct:   203 MKKTHYYLVDTSVIIPGAAVSELEFKVIHEDQPFVVNDLKITPLPVWHGSNYRSLGFRFG 262

Query:   180 NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 239
             N+CYISDVS+IPEETYP L+DC++LIMDALRPDRSS+THFGLPRALEEVRKI+PKRTLF 
Sbjct:   263 NVCYISDVSDIPEETYPLLKDCDLLIMDALRPDRSSATHFGLPRALEEVRKIKPKRTLFT 322

Query:   240 GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 278
             GMMHLMDHEKV+EEL KL  TEGLDVQLSYDGLRVP+ +
Sbjct:   323 GMMHLMDHEKVSEELEKLRNTEGLDVQLSYDGLRVPISI 361

GO:0003824 "catalytic activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

POMBASE\|SPCC777.06c SPCC777.06c "hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

TAIR\|locus:2140695 AT4G03610 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2009827 AT1G30300 "AT1G30300" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2465 GSU_2465 "metallo-beta-lactamase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5LPV6 SPO2743 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2743 SPO_2743 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|APH_1062 APH_1062 "metallo-beta-lactamase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0985 ECH_0985 "metallo-beta-lactamase family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|NSE_0580 NSE_0580 "metallo-beta-lactamase family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74545	YCV6_SCHPO	No assigned EC number	0.3840	0.9568	0.8837	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00440110	hypothetical protein (314 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_9406000001	hypothetical protein (424 aa)	•	•	0.412
	gw1.X.2264.1	hypothetical protein (594 aa)	•	•	0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		278
PRK02113		252	PRK02113, PRK02113, putative hydrolase; Provisiona	2e-47
COG1235		269	COG1235, PhnP, Metal-dependent hydrolases of the b	4e-27
PRK11244		250	PRK11244, phnP, carbon-phosphorus lyase complex ac	1e-19
pfam12706		197	pfam12706, Lactamase_B_2, Beta-lactamase superfami	3e-19
smart00849		177	smart00849, Lactamase_B, Metallo-beta-lactamase su	3e-17
TIGR03307		238	TIGR03307, PhnP, phosphonate metabolism protein Ph	2e-15
pfam00753		148	pfam00753, Lactamase_B, Metallo-beta-lactamase sup	2e-13
COG0491		252	COG0491, GloB, Zn-dependent hydrolases, including	1e-07
COG1234		292	COG1234, ElaC, Metal-dependent hydrolases of the b	3e-07
COG2333		293	COG2333, ComEC, Predicted hydrolase (metallo-beta-	4e-06
pfam07718		279	pfam07718, Coatamer_beta_C, Coatamer beta C-termin	5e-04
COG1236		427	COG1236, YSH1, Predicted exonuclease of the beta-l	6e-04
PRK00055		270	PRK00055, PRK00055, ribonuclease Z; Reviewed	0.003
COG2220		258	COG2220, COG2220, Predicted Zn-dependent hydrolase	0.003

>gnl\|CDD\|179371 PRK02113, PRK02113, putative hydrolase; Provisional	Back alignment and domain information

 Score =  158 bits (400), Expect = 2e-47
 Identities = 100/275 (36%), Positives = 136/275 (49%), Gaps = 31/275 (11%)

Query: 1   MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAG 60
           +G+GTS G+P + C       CPVCT   +P  ++ RL TS L+   G      ILID G
Sbjct: 6   LGSGTSTGVPEIGC------TCPVCTSK-DP--RDNRLRTSALVETEG----ARILIDCG 52

Query: 61  KFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV 120
             F    LR         IDAV+ITH H D +GGLDDLR +       +PIY      E 
Sbjct: 53  PDFREQMLR----LPFGKIDAVLITHEHYDHVGGLDDLRPFCR--FGEVPIYAEQYVAER 106

Query: 121 MK-KTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG 179
           ++ +  Y  V+ S   PG     L+  I  + PF V   ++TPL V HG     LG+R G
Sbjct: 107 LRSRMPYCFVEHS--YPGVPNIPLR-EIEPDRPFLVNHTEVTPLRVMHGK-LPILGYRIG 162

Query: 180 NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 239
            + YI+D+  +PEE Y  LQ  ++L+M+ALR      TH  L  ALE +++I  K T  I
Sbjct: 163 KMAYITDMLTMPEEEYEQLQGIDVLVMNALRI-APHPTHQSLEEALENIKRIGAKETYLI 221

Query: 240 GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 274
            M H +      E+ L         V  +YDGL +
Sbjct: 222 HMSHHIGLHADVEKELP------PHVHFAYDGLEI 250

Length = 252

>gnl\|CDD\|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional	Back alignment and domain information

>gnl\|CDD\|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain	Back alignment and domain information

>gnl\|CDD\|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily	Back alignment and domain information

>gnl\|CDD\|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP	Back alignment and domain information

>gnl\|CDD\|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily	Back alignment and domain information

>gnl\|CDD\|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|225212 COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|219533 pfam07718, Coatamer_beta_C, Coatamer beta C-terminal region	Back alignment and domain information

>gnl\|CDD\|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed	Back alignment and domain information

>gnl\|CDD\|225130 COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		278
PRK02113		252	putative hydrolase; Provisional	100.0
TIGR02108		302	PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B.	100.0
PRK05184		302	pyrroloquinoline quinone biosynthesis protein PqqB	100.0
PRK11244		250	phnP carbon-phosphorus lyase complex accessory pro	100.0
TIGR03307		238	PhnP phosphonate metabolism protein PhnP. This fam	100.0
TIGR02649		303	true_RNase_BN ribonuclease BN. Members of this pro	100.0
TIGR02651		299	RNase_Z ribonuclease Z. Processing of the 3-prime	99.98
PRK00055		270	ribonuclease Z; Reviewed	99.95
COG1234		292	ElaC Metal-dependent hydrolases of the beta-lactam	99.95
PRK02126		334	ribonuclease Z; Provisional	99.93
PRK00685		228	metal-dependent hydrolase; Provisional	99.92
PF12706		194	Lactamase_B_2: Beta-lactamase superfamily domain;	99.9
COG1235		269	PhnP Metal-dependent hydrolases of the beta-lactam	99.89
TIGR02650		277	RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me	99.88
PRK04286		298	hypothetical protein; Provisional	99.87
TIGR00649		422	MG423 conserved hypothetical protein. Contains an	99.86
PRK11709		355	putative L-ascorbate 6-phosphate lactonase; Provis	99.83
KOG2121		746	consensus Predicted metal-dependent hydrolase (bet	99.82
TIGR03675		630	arCOG00543 arCOG00543 universal archaeal KH-domain	99.8
smart00849		183	Lactamase_B Metallo-beta-lactamase superfamily. Ap	99.77
COG0595		555	mRNA degradation ribonucleases J1/J2 (metallo-beta	99.74
COG1782		637	Predicted metal-dependent RNase, consists of a met	99.73
PRK11921		394	metallo-beta-lactamase/flavodoxin domain-containin	99.7
COG1236		427	YSH1 Predicted exonuclease of the beta-lactamase f	99.7
COG2333		293	ComEC Predicted hydrolase (metallo-beta-lactamase	99.67
KOG1136		501	consensus Predicted cleavage and polyadenylation s	99.66
PRK05452		479	anaerobic nitric oxide reductase flavorubredoxin;	99.65
PRK11539		755	ComEC family competence protein; Provisional	99.65
TIGR00361		662	ComEC_Rec2 DNA internalization-related competence	99.64
TIGR03413		248	GSH_gloB hydroxyacylglutathione hydrolase. Members	99.64
COG1237		259	Metal-dependent hydrolases of the beta-lactamase s	99.61
COG2220		258	Predicted Zn-dependent hydrolases of the beta-lact	99.61
COG0426		388	FpaA Uncharacterized flavoproteins [Energy product	99.6
PRK10241		251	hydroxyacylglutathione hydrolase; Provisional	99.59
PLN02469		258	hydroxyacylglutathione hydrolase	99.58
PF13483		163	Lactamase_B_3: Beta-lactamase superfamily domain;	99.57
PF02112		335	PDEase_II: cAMP phosphodiesterases class-II; Inter	99.57
PLN02962		251	hydroxyacylglutathione hydrolase	99.57
PF00753		194	Lactamase_B: Metallo-beta-lactamase superfamily; I	99.56
PLN02398		329	hydroxyacylglutathione hydrolase	99.55
COG0491		252	GloB Zn-dependent hydrolases, including glyoxylase	99.39
KOG1137		668	consensus mRNA cleavage and polyadenylation factor	99.38
KOG0813		265	consensus Glyoxylase [General function prediction	99.22
COG2248		304	Predicted hydrolase (metallo-beta-lactamase superf	99.21
COG5212		356	PDE1 Low-affinity cAMP phosphodiesterase [Signal t	99.1
KOG1135		764	consensus mRNA cleavage and polyadenylation factor	99.0
KOG1361		481	consensus Predicted hydrolase involved in interstr	98.88
KOG0814		237	consensus Glyoxylase [General function prediction	98.88
KOG3798		343	consensus Predicted Zn-dependent hydrolase (beta-l	98.77
PF14597		199	Lactamase_B_5: Metallo-beta-lactamase superfamily;	98.67
COG2015		655	Alkyl sulfatase and related hydrolases [Secondary	97.96
PF13691		63	Lactamase_B_4: tRNase Z endonuclease	97.41
KOG4736		302	consensus Uncharacterized conserved protein [Funct	95.74
PF07521		43	RMMBL: RNA-metabolising metallo-beta-lactamase; In	93.53
KOG3592		934	consensus Microtubule-associated proteins [Cytoske	92.77
TIGR00649		422	MG423 conserved hypothetical protein. Contains an	91.38
KOG1137		668	consensus mRNA cleavage and polyadenylation factor	83.48
TIGR03675		630	arCOG00543 arCOG00543 universal archaeal KH-domain	82.19

>PRK02113 putative hydrolase; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.5e-41  Score=287.21  Aligned_cols=246  Identities=38%  Similarity=0.663  Sum_probs=196.2

Q ss_pred             CCCCCCCCcccccccCCCCCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcC
Q 023686            1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTID   80 (278)
Q Consensus         1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id   80 (278)
                      ||||+++|+|+++|      .|++|.++.   +.+.|.++|++|+    .++..+|||||+++..++.+    .++.+||
T Consensus         6 lGtg~~~g~P~~~c------~c~~C~~~~---~~~~R~~~s~li~----~~~~~iLiD~G~g~~~~l~~----~~~~~id   68 (252)
T PRK02113          6 LGSGTSTGVPEIGC------TCPVCTSKD---PRDNRLRTSALVE----TEGARILIDCGPDFREQMLR----LPFGKID   68 (252)
T ss_pred             EEeCCCCCeecCCC------CCccCCCCC---CCCcceeeEEEEE----ECCeEEEEECCchHHHHHHh----cCccccC
Confidence            79999999999999      999999986   6789999999999    45789999999987665544    2668999


Q ss_pred             EEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceE
Q 023686           81 AVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK  159 (278)
Q Consensus        81 ~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~  159 (278)
                      +|||||.|+||++|++.+.....  ..+++||+++.+.+.+.+...+.+.... .+  .....++..+ +++.+++++++
T Consensus        69 ~I~lTH~H~DH~~gl~~l~~~~~--~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~  143 (252)
T PRK02113         69 AVLITHEHYDHVGGLDDLRPFCR--FGEVPIYAEQYVAERLRSRMPYCFVEHS-YP--GVPNIPLREIEPDRPFLVNHTE  143 (252)
T ss_pred             EEEECCCChhhhCCHHHHHHhcc--CCCceEEECHHHHHHHHhhCCeeeccCC-CC--CCcceeeEEcCCCCCEEECCeE
Confidence            99999999999999998865421  2468999999988888765432221110 01  1122455555 57889999999


Q ss_pred             EEEEEecCCCCceeeEEEEccEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEE
Q 023686          160 ITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI  239 (278)
Q Consensus       160 i~~~~~~H~~~~~~~g~~i~~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~  239 (278)
                      |+++++.|+. .+++||++++++|+||+.+.++...+.++++|++++|+.+ ....++|+++++++++++++++++++++
T Consensus       144 i~~~~~~H~~-~~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~-~~~~~~H~t~~~a~~~~~~~~~k~l~l~  221 (252)
T PRK02113        144 VTPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALR-IAPHPTHQSLEEALENIKRIGAKETYLI  221 (252)
T ss_pred             EEEEEecCCC-ccEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhc-CCCCCCcCCHHHHHHHHHHhCCCEEEEE
Confidence            9999999975 4789999999999999998777788889999999999976 3456789999999999999999999999


Q ss_pred             eeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686          240 GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV  276 (278)
Q Consensus       240 h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~  276 (278)
                      |+.+.+..   .+   +..+....++.+|+|||++++
T Consensus       222 H~s~~~~~---~~---~~~~~~~~~~~~A~Dg~~~~~  252 (252)
T PRK02113        222 HMSHHIGL---HA---DVEKELPPHVHFAYDGLEIIF  252 (252)
T ss_pred             cccccchh---HH---HHHHhCCCCceeccCceEEeC
Confidence            99876532   12   223333446899999999975

>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B	Back alignment and domain information

>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	Back alignment and domain information

>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional	Back alignment and domain information

>TIGR03307 PhnP phosphonate metabolism protein PhnP	Back alignment and domain information

>TIGR02649 true_RNase_BN ribonuclease BN	Back alignment and domain information

>TIGR02651 RNase_Z ribonuclease Z	Back alignment and domain information

>PRK00055 ribonuclease Z; Reviewed	Back alignment and domain information

>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]	Back alignment and domain information

>PRK02126 ribonuclease Z; Provisional	Back alignment and domain information

>PRK00685 metal-dependent hydrolase; Provisional	Back alignment and domain information

>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A	Back alignment and domain information

>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	Back alignment and domain information

>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type	Back alignment and domain information

>PRK04286 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00649 MG423 conserved hypothetical protein	Back alignment and domain information

>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional	Back alignment and domain information

>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein	Back alignment and domain information

>smart00849 Lactamase_B Metallo-beta-lactamase superfamily	Back alignment and domain information

>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	Back alignment and domain information

>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]	Back alignment and domain information

>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional	Back alignment and domain information

>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional	Back alignment and domain information

>PRK11539 ComEC family competence protein; Provisional	Back alignment and domain information

>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2	Back alignment and domain information

>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase	Back alignment and domain information

>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	Back alignment and domain information

>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	Back alignment and domain information

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]	Back alignment and domain information

>PRK10241 hydroxyacylglutathione hydrolase; Provisional	Back alignment and domain information

>PLN02469 hydroxyacylglutathione hydrolase	Back alignment and domain information

>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A	Back alignment and domain information

>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3	Back alignment and domain information

>PLN02962 hydroxyacylglutathione hydrolase	Back alignment and domain information

>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []	Back alignment and domain information

>PLN02398 hydroxyacylglutathione hydrolase	Back alignment and domain information

>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]	Back alignment and domain information

>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>KOG0813 consensus Glyoxylase [General function prediction only]	Back alignment and domain information

>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]	Back alignment and domain information

>KOG0814 consensus Glyoxylase [General function prediction only]	Back alignment and domain information

>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B	Back alignment and domain information

>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF13691 Lactamase_B_4: tRNase Z endonuclease	Back alignment and domain information

>KOG4736 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs	Back alignment and domain information

>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]	Back alignment and domain information

>TIGR00649 MG423 conserved hypothetical protein	Back alignment and domain information

>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		278
3md7_A		293	Crystal Structure Of A Beta-Lactamase-Like Protein		2e-26
3py6_A		274	Crystal Structure Of A Beta-Lactamase-Like Protein		2e-26
3g1p_A		258	Crystals Structure Of Phnp From E.Coli K-12 Length		2e-08

>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound To Gmp From Brucella Melitensis Length = 293

Back alignment and structure

Iteration: 1

Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 30/284 (10%) Query: 1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILI-RYPGPSGRRNILID 58 +G G+S G+PR++ KC +P N KNRR S+L+ RY ++ID Sbjct: 34 LGCGSSPGVPRIN---GDWGKC-------DPKNPKNRRRRASLLVERYDAEGNNTVVVID 83 Query: 59 AGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 118 G F + G+ +DA + TH HAD I G+DDLR + + R + +Y Sbjct: 84 TGPDFRMQMID----SGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTR 139 Query: 119 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD----LKITPLPVWHGAGYRSL 174 + T Y +T + + +I E PF+++ ++ P HG SL Sbjct: 140 NRLYDTFGYCFETPVGSSYPPILSMH-DIAPETPFSIEGAGGAIRFEPFSQVHG-DIESL 197 Query: 175 GFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPK 234 GFR G++ Y +DVS PE++ +++D ++LI+ AL+ R +HF L ALE + K+ PK Sbjct: 198 GFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQ-YRPHPSHFSLGEALEWIEKLSPK 256 Query: 235 RTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 278 R + M +D+E V E V+ YDGLR V + Sbjct: 257 RAILTHMHVPLDYETVMRETPH-------HVEPGYDGLRFEVAV 293

PyMOL of 3md7

>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From Brucella Melitensis Bound To Gmp Length = 274

Back alignment and structure

>pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12 Length = 258

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		278
3md7_A		293	Beta-lactamase-like; ssgcid, hydrolase, structural	4e-90
3g1p_A		258	Protein PHNP; C-P lyase, phosphodiesterase, phosph	1e-79
3jxp_A		321	Coenzyme PQQ synthesis protein B; alpha-beta prote	2e-35
1zkp_A		268	Hypothetical protein BA1088; zinc binding protein,	1e-18
2p4z_A		284	Metal-dependent hydrolases of the beta-lactamase s	3e-08
1p9e_A		331	Methyl parathion hydrolase; Zn containing; 2.40A {	1e-06
3aj3_A		274	MLR6805 protein, 4-pyridoxolactonase; Zn-protein,	2e-06
1k07_A		263	FEZ-1 beta-lactamase; monomer with alpha-beta/BETA	3e-06
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	3e-06
2cbn_A		306	Ribonuclease Z; phosphodiesterase beta lactamase t	3e-06
3m8t_A		294	'BLR6230 protein; subclass B3 beta-lactamase, zinc	4e-06
4ax1_B		303	Metallo-beta-lactamase AIM-1; hydrolase, antibioti	5e-06
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	6e-06
3iek_A		431	Ribonuclease TTHA0252; metallo beta lactamase fold	7e-06
2i7x_A		717	Protein CFT2; polyadenylation, metallo-B-lactamase	9e-06
3dha_A		254	N-acyl homoserine lactone hydrolase; zinc bimetall	9e-06
3h3e_A		267	Uncharacterized protein TM1679; structural genomic	1e-05
4ad9_A		289	Lactb2, beta-lactamase-like protein 2; hydrolase,	2e-05
2xf4_A		210	Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A	2e-05
3esh_A		280	Protein similar to metal-dependent hydrolase; stru	3e-05
1a7t_A		232	Metallo-beta-lactamase; hydrolase (beta-lactamase)	7e-05
1ztc_A		221	Hypothetical protein TM0894; structural genomics,	1e-04
3adr_A		261	Putative uncharacterized protein ST1585; quorum se	1e-04
1y44_A		320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	1e-04
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	2e-04
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	3e-04
3zwf_A		368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	3e-04
1sml_A		269	Protein (penicillinase); metallo-beta-lactamase, a	3e-04
2az4_A		429	Hypothetical protein EF2904; structural genomics,	3e-04
3bk2_A		562	RNAse J, metal dependent hydrolase; endoribonuclea	3e-04
2zwr_A		207	Metallo-beta-lactamase superfamily protein; hydrol	5e-04
4eyb_A		270	Beta-lactamase NDM-1; metallo beta lactamase, anti	5e-04
2yhe_A		668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	8e-04
2e7y_A		280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	8e-04

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Length = 293	Back alignment and structure

 Score =  268 bits (687), Expect = 4e-90
 Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 30/284 (10%)

Query: 1   MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILIRYPGPSGR-RNILID 58
           +G G+S G+PR++           C     P N KNRR   S+L+      G    ++ID
Sbjct: 34  LGCGSSPGVPRING------DWGKCD----PKNPKNRRRRASLLVERYDAEGNNTVVVID 83

Query: 59  AGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 118
            G  F    +      G+  +DA + TH HAD I G+DDLR +  +  R + +Y      
Sbjct: 84  TGPDFRMQMID----SGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTR 139

Query: 119 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQ----DLKITPLPVWHGAGYRSL 174
             +  T  Y  +T        +  +  +I  E PF+++     ++  P    HG    SL
Sbjct: 140 NRLYDTFGYCFETPVGSSYPPILSM-HDIAPETPFSIEGAGGAIRFEPFSQVHG-DIESL 197

Query: 175 GFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPK 234
           GFR G++ Y +DVS  PE++  +++D ++LI+ AL+  R   +HF L  ALE + K+ PK
Sbjct: 198 GFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQY-RPHPSHFSLGEALEWIEKLSPK 256

Query: 235 RTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 278
           R +   M   +D+E V  E           V+  YDGLR  V +
Sbjct: 257 RAILTHMHVPLDYETVMRETPH-------HVEPGYDGLRFEVAV 293

PyMOL of 3md7

>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258	Back alignment and structure

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321	Back alignment and structure

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268	Back alignment and structure

>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Length = 284	Back alignment and structure

>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331	Back alignment and structure

>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Length = 274	Back alignment and structure

>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263	Back alignment and structure

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459	Back alignment and structure

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306	Back alignment and structure

>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Length = 294	Back alignment and structure

>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Length = 303	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636	Back alignment and structure

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431	Back alignment and structure

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717	Back alignment and structure

>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Length = 254	Back alignment and structure

>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Length = 267	Back alignment and structure

>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Length = 289	Back alignment and structure

>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210	Back alignment and structure

>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 280	Back alignment and structure

>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232	Back alignment and structure

>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221	Back alignment and structure

>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261	Back alignment and structure

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651	Back alignment and structure

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368	Back alignment and structure

>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Length = 269	Back alignment and structure

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429	Back alignment and structure

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562	Back alignment and structure

>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Length = 207	Back alignment and structure

>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Length = 270	Back alignment and structure

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Length = 668	Back alignment and structure

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		278
3md7_A		293	Beta-lactamase-like; ssgcid, hydrolase, structural	100.0
3jxp_A		321	Coenzyme PQQ synthesis protein B; alpha-beta prote	100.0
3g1p_A		258	Protein PHNP; C-P lyase, phosphodiesterase, phosph	100.0
2cbn_A		306	Ribonuclease Z; phosphodiesterase beta lactamase t	99.98
1zkp_A		268	Hypothetical protein BA1088; zinc binding protein,	99.97
1y44_A		320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	99.97
3zwf_A		368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	99.97
2e7y_A		280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	99.95
3rpc_A		264	Possible metal-dependent hydrolase; structural gen	99.92
3kl7_A		235	Putative metal-dependent hydrolase; structural gen	99.91
2wyl_A		360	L-ascorbate-6-phosphate lactonase ULAG; hydrolase;	99.9
3bv6_A		379	Metal-dependent hydrolase; metallo protein, beta-l	99.9
2az4_A		429	Hypothetical protein EF2904; structural genomics,	99.89
3iek_A		431	Ribonuclease TTHA0252; metallo beta lactamase fold	99.87
3zq4_A		555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	99.85
3bk2_A		562	RNAse J, metal dependent hydrolase; endoribonuclea	99.84
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	99.83
1vjn_A		220	Zn-dependent hydrolase of metallo-beta-lactamase s	99.83
2p4z_A		284	Metal-dependent hydrolases of the beta-lactamase s	99.83
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	99.82
2i7x_A		717	Protein CFT2; polyadenylation, metallo-B-lactamase	99.82
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	99.82
4b87_A		367	DNA cross-LINK repair 1A protein; dclre1A, DCLRE,	99.82
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	99.8
3adr_A		261	Putative uncharacterized protein ST1585; quorum se	99.77
3m8t_A		294	'BLR6230 protein; subclass B3 beta-lactamase, zinc	99.76
2bib_A		547	CBPE, teichoic acid phosphorylcholine esterase/ ch	99.76
3l6n_A		219	Metallo-beta-lactamase; zinc, hydolase, antibiotic	99.75
1a7t_A		232	Metallo-beta-lactamase; hydrolase (beta-lactamase)	99.74
1k07_A		263	FEZ-1 beta-lactamase; monomer with alpha-beta/BETA	99.74
3hnn_A		262	Putative diflavin flavoprotein A 5; PSI-2, protein	99.73
2ohh_A		404	Type A flavoprotein FPRA; beta-lactamase like doma	99.72
4ax1_B		303	Metallo-beta-lactamase AIM-1; hydrolase, antibioti	99.72
4ad9_A		289	Lactb2, beta-lactamase-like protein 2; hydrolase,	99.72
1ycg_A		398	Nitric oxide reductase; DIIRON site, oxidoreductas	99.72
3zdk_A		336	5' exonuclease apollo; hydrolase; HET: TLA; 2.16A	99.72
1e5d_A		402	Rubredoxin\:oxygen oxidoreductase; oxygenreductase	99.72
4dik_A		410	Flavoprotein; TM0755, electron transport, DI-iron	99.71
1m2x_A		223	Class B carbapenemase BLAB-1; alpha-beta/BETA-alph	99.71
4efz_A		298	Metallo-beta-lactamase family protein; structural	99.71
3q6v_A		233	Beta-lactamase; metalloenzyme, alpha-beta, hydrola	99.7
4hl2_A		243	Beta-lactamase NDM-1; structural genomics, PSI-bio	99.7
2r2d_A		276	AGR_PTI_140P, Zn-dependent hydrolases; lactonase,	99.69
1sml_A		269	Protein (penicillinase); metallo-beta-lactamase, a	99.68
1mqo_A		227	Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd	99.68
2zo4_A		317	Metallo-beta-lactamase family protein; hydrolase;	99.67
3iog_A		227	Beta-lactamase; hydrolase, antibiotic resistance,	99.67
2xf4_A		210	Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A	99.67
4eyb_A		270	Beta-lactamase NDM-1; metallo beta lactamase, anti	99.66
3dha_A		254	N-acyl homoserine lactone hydrolase; zinc bimetall	99.66
3aj3_A		274	MLR6805 protein, 4-pyridoxolactonase; Zn-protein,	99.66
1jjt_A		228	IMP-1 metallo beta-lactamase; metallo-beta-lactama	99.66
2q9u_A		414	A-type flavoprotein; flavodoxin like, beta lactama	99.66
2gcu_A		245	Putative hydroxyacylglutathione hydrolase 3; ethyl	99.65
2vw8_A		303	PA1000, PQSE; quinolone signal response protein, s	99.65
2y8b_A		265	Metallo-B-lactamase; hydrolase, cephalosporins, an	99.65
2fhx_A		246	SPM-1; metallo-beta-lactamase, dinuclear zinc, ant	99.64
2zwr_A		207	Metallo-beta-lactamase superfamily protein; hydrol	99.62
1xm8_A		254	Glyoxalase II; structural genomics, protein struct	99.62
2qed_A		258	Hydroxyacylglutathione hydrolase; metallo-B- super	99.61
1qh5_A		260	Glyoxalase II, protein (hydroxyacylglutathione hyd	99.59
1ztc_A		221	Hypothetical protein TM0894; structural genomics,	99.57
2p18_A		311	Glyoxalase II; metalloprotein, beta sandwich, alph	99.56
3esh_A		280	Protein similar to metal-dependent hydrolase; stru	99.56
3tp9_A		474	Beta-lactamase and rhodanese domain protein; struc	99.55
3r2u_A		466	Metallo-beta-lactamase family protein; structural	99.52
2cfu_A		658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	99.48
2p97_A		201	Hypothetical protein; putative metal-dependent hyd	99.46
1p9e_A		331	Methyl parathion hydrolase; Zn containing; 2.40A {	99.41
3h3e_A		267	Uncharacterized protein TM1679; structural genomic	99.39
2yhe_A		668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	98.98
3bk2_A		562	RNAse J, metal dependent hydrolase; endoribonuclea	91.37
3zq4_A		555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	89.52
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	87.48
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	86.97
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	86.8
2az4_A		429	Hypothetical protein EF2904; structural genomics,	85.47
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	84.37

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*	Back alignment and structure

Probab=100.00  E-value=7e-41  Score=287.93  Aligned_cols=253  Identities=32%  Similarity=0.564  Sum_probs=202.0

Q ss_pred             CCCCCCCCcccccccCCCCCCCccccccccCCCCCcccceeEEEEccCCCCC--ceEEEecCcchHHHHhhhCCcCCCCC
Q 023686            1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGR--RNILIDAGKFFYHSALRWFPAYGIRT   78 (278)
Q Consensus         1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~--~~iLiD~G~~~~~~~~~~l~~~~~~~   78 (278)
                      ||||+++|+|+|+|      .|.+|.++.   +.+.|+++|++|+..+ .++  +.+|||||++...++.+    .++.+
T Consensus        34 LG~g~~~G~P~~~c------~c~~C~~~~---~~~~R~~~s~li~~~~-~~g~~~~iLID~G~~~~~~l~~----~~~~~   99 (293)
T 3md7_A           34 LGCGSSPGVPRING------DWGKCDPKN---PKNRRRRASLLVERYD-AEGNNTVVVIDTGPDFRMQMID----SGVHM   99 (293)
T ss_dssp             EECBCTTCBSCTTC------CCTTSCTTC---GGGCBCBCEEEEEEEC-TTCCEEEEEECCCTTHHHHHHH----HTCCC
T ss_pred             EeecCCCCcccCCC------CCccCCccC---CCCcccccEEEEEecC-CCCceeEEEEECCccHHHHHHh----cCCCc
Confidence            79999999999999      999999986   4678999999999411 123  79999999997666654    35679


Q ss_pred             cCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecc
Q 023686           79 IDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQD  157 (278)
Q Consensus        79 Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  157 (278)
                      ||+|||||.|.||++|++.+...+.....+++||+++.+.+.+++.+.+.+....  ........++..+ +++.+++++
T Consensus       100 id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~~g~  177 (293)
T 3md7_A          100 LDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPV--GSSYPPILSMHDIAPETPFSIEG  177 (293)
T ss_dssp             CSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCT--TCCCCCCEEEEECCTTCCEEECC
T ss_pred             ccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhhhhcccc--ccCCCCceEEEEcCCCCcEEECC
Confidence            9999999999999999999887543233578999999999888775544332110  0001122355566 578999999


Q ss_pred             ----eEEEEEEecCCCCceeeEEEEccEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCC
Q 023686          158 ----LKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQP  233 (278)
Q Consensus       158 ----~~i~~~~~~H~~~~~~~g~~i~~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~  233 (278)
                          ++|+++++.|.+ .+++||++++++|+||+.+.++.+.+.++++|++++|+++.. ..+.|+++.+++++++++++
T Consensus       178 ~~~~~~v~~~~~~H~~-~~~~g~~i~~~~y~gDt~~~~~~~~~~~~~~Dlli~e~~~~~-~~~~H~~~~~a~~~~~~~~~  255 (293)
T 3md7_A          178 AGGAIRFEPFSQVHGD-IESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYR-PHPSHFSLGEALEWIEKLSP  255 (293)
T ss_dssp             TTCCEEEEEEEEEETT-EEEEEEEETTEEEECSCSBCCGGGHHHHTTCSEEEEECCCSS-CBTTBCCHHHHHHHHHHHCC
T ss_pred             CCCcEEEEEEEecCCC-CCEEEEEEeEEEEECCCCCCCHHHHHHhcCCCEEEEeCccCC-CCCCCCCHHHHHHHHHHcCC
Confidence                999999999985 489999999999999999888888999999999999997654 56789999999999999999


Q ss_pred             CeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEeecC
Q 023686          234 KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML  278 (278)
Q Consensus       234 ~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~~~  278 (278)
                      ++++++|+++.+...    ++   .++....+.+++|||+|+++.
T Consensus       256 k~lvl~H~~~~~~~~----~~---~~~~~~~v~~a~DG~~i~l~~  293 (293)
T 3md7_A          256 KRAILTHMHVPLDYE----TV---MRETPHHVEPGYDGLRFEVAV  293 (293)
T ss_dssp             SEEEEESBCTTCCHH----HH---HHHSCTTEEECCTTCEEEECC
T ss_pred             CEEEEECCCCCCCHH----HH---HhhcCCCcEEeeCCcEEEecC
Confidence            999999999887642    12   223344899999999999863

PyMOL of 3md7

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A	Back alignment and structure

>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A	Back alignment and structure

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7	Back alignment and structure

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9	Back alignment and structure

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*	Back alignment and structure

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}	Back alignment and structure

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A	Back alignment and structure

>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}	Back alignment and structure

>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*	Back alignment and structure

>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}	Back alignment and structure

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10	Back alignment and structure

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*	Back alignment and structure

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}	Back alignment and structure

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*	Back alignment and structure

>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4	Back alignment and structure

>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10	Back alignment and structure

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A	Back alignment and structure

>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}	Back alignment and structure

>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}	Back alignment and structure

>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A	Back alignment and structure

>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*	Back alignment and structure

>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0	Back alignment and structure

>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*	Back alignment and structure

>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A	Back alignment and structure

>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*	Back alignment and structure

>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B	Back alignment and structure

>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}	Back alignment and structure

>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*	Back alignment and structure

>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}	Back alignment and structure

>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3	Back alignment and structure

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*	Back alignment and structure

>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1	Back alignment and structure

>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}	Back alignment and structure

>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A	Back alignment and structure

>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A	Back alignment and structure

>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}	Back alignment and structure

>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A	Back alignment and structure

>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...	Back alignment and structure

>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}	Back alignment and structure

>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A	Back alignment and structure

>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}	Back alignment and structure

>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A	Back alignment and structure

>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A	Back alignment and structure

>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A	Back alignment and structure

>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A	Back alignment and structure

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}	Back alignment and structure

>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}	Back alignment and structure

>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*	Back alignment and structure

>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A	Back alignment and structure

>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}	Back alignment and structure

>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A	Back alignment and structure

>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A	Back alignment and structure

>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2	Back alignment and structure

>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*	Back alignment and structure

>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11	Back alignment and structure

>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*	Back alignment and structure

>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}	Back alignment and structure

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}	Back alignment and structure

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*	Back alignment and structure

>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12	Back alignment and structure

>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5	Back alignment and structure

>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}	Back alignment and structure

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}	Back alignment and structure

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*	Back alignment and structure

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*	Back alignment and structure

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10	Back alignment and structure

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		278
d1xtoa_		304	d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P	8e-31
d1zkpa1		244	d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B	2e-13
d2dkfa1		431	d.157.1.10 (A:1-431) Putative RNA-degradation prot	8e-11
d1y44a1		307	d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci	7e-10
d2i7xa1		514	d.157.1.10 (A:1-422,A:626-717) Cleavage factor two	4e-08
d2i7ta1		451	d.157.1.10 (A:9-459) Cleavage and polyadenylation	2e-07
d2cbna1		305	d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Esch	3e-07
d2e7ya1		280	d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther	3e-07
d1wraa1		305	d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi	2e-06
d2az4a1		183	d.157.1.10 (A:56-238) Hypothetical protein EF2904	8e-06
d2cfua2		505	d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudo	5e-05
d1vmea2		250	d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,	5e-04
d1p9ea_		294	d.157.1.5 (A:) Methyl parathion hydrolase {Pseudom	0.001
d2gmna1		264	d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Br	0.002
d1znba_		230	d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroi	0.003
d1e5da2		249	d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreducta	0.004

>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Coenzyme PQQ synthesis protein B, PqqB
domain: Coenzyme PQQ synthesis protein B, PqqB
species: Pseudomonas putida [TaxId: 303]

 Score =  114 bits (286), Expect = 8e-31
 Identities = 45/316 (14%), Positives = 92/316 (29%), Gaps = 56/316 (17%)

Query: 1   MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILIRYPGPSGRRNILIDA 59
           +G+    G P+ +C       C  C    +       R  +SI +   G      IL +A
Sbjct: 6   LGSAAGGGFPQWNC------NCVNCKGYRDGTLKATARTQSSIALSDDG---VHWILCNA 56

Query: 60  GKFFYHSALRWFPAY-----GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 114
                     + P           I+A+++  S  D   GL  LR+          ++  
Sbjct: 57  SPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG-----CPHQVWCT 111

Query: 115 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYR-- 172
               + +          S    G   + ++            +LK TP P+   A     
Sbjct: 112 DMVHQDLTTGFPLFNMLSHWNGGLQWNRIELE-GSFVIDACPNLKFTPFPLRSAAPPYSP 170

Query: 173 ---------------SLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPD----- 212
                                G + Y   + ++ E+    +   + L++D    +     
Sbjct: 171 HRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEMQ 230

Query: 213 -----------RSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETE 261
                             G    LE +     +R + I + +       N      +   
Sbjct: 231 RRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRR 290

Query: 262 GLDVQLSYDGLRVPVM 277
           G  V++++DG+ + ++
Sbjct: 291 G--VEVAFDGMSIELL 304

PyMOL of d1xtoa_

>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244	Back information, alignment and structure

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431	Back information, alignment and structure

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307	Back information, alignment and structure

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451	Back information, alignment and structure

>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305	Back information, alignment and structure

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280	Back information, alignment and structure

>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305	Back information, alignment and structure

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183	Back information, alignment and structure

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505	Back information, alignment and structure

>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250	Back information, alignment and structure

>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294	Back information, alignment and structure

>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264	Back information, alignment and structure

>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Length = 230	Back information, alignment and structure

>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 249	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		278
d1xtoa_		304	Coenzyme PQQ synthesis protein B, PqqB {Pseudomona	100.0
d1zkpa1		244	Hypothetical protein BA1088 (BAS1016) {Bacillus an	100.0
d2cbna1		305	Ribonuclease Z (RNase Z) {Escherichia coli [TaxId:	99.97
d1y44a1		307	Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId	99.97
d2e7ya1		280	Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax	99.91
d2dkfa1		431	Putative RNA-degradation protein TTHA0252 {Thermus	99.84
d2az4a1		183	Hypothetical protein EF2904 {Enterococcus faecalis	99.78
d2i7ta1		451	Cleavage and polyadenylation specificity factor su	99.75
d2i7xa1		514	Cleavage factor two protein 2, CFT2 {Baker's yeast	99.7
d1k07a_		262	Zn metallo-beta-lactamase {Fluoribacter gormanii,	99.7
d2gmna1		264	Zn metallo-beta-lactamase {Bradyrhizobium japonicu	99.69
d2aioa1		266	Zn metallo-beta-lactamase {Xanthomonas maltophilia	99.69
d1ycga2		249	Nitric oxide reductase N-terminal domain {Moorella	99.67
d1wraa1		305	Teichoic acid phosphorylcholine esterase Pce (LytD	99.65
d1e5da2		249	Rubredoxin oxygen:oxidoreductase (ROO), N-terminal	99.64
d1ko3a_		230	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	99.64
d1vjna_		209	Hypothetical protein TM0207 {Thermotoga maritima [	99.64
d1znba_		230	Zn metallo-beta-lactamase {Bacteroides fragilis [T	99.63
d2q0ia1		298	Quinolone signal response protein PqsE {Pseudomona	99.61
d1x8ha_		228	Zn metallo-beta-lactamase {Aeromonas hydrophila, C	99.6
d1vmea2		250	ROO-like flavoprotein TM0755, N-terminal domain {T	99.6
d1m2xa_		219	Zn metallo-beta-lactamase {Chryseobacterium mening	99.58
d1xm8a_		254	Glyoxalase II (hydroxyacylglutathione hydrolase) {	99.57
d1mqoa_		221	Zn metallo-beta-lactamase {Bacillus cereus [TaxId:	99.56
d2qeda1		251	Glyoxalase II (hydroxyacylglutathione hydrolase) {	99.55
d1ztca1		207	Hypothetical protein TM0894 {Thermotoga maritima [	99.54
d1jjta_		220	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	99.54
d1qh5a_		260	Glyoxalase II (hydroxyacylglutathione hydrolase) {	99.53
d2cfua2		505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	99.44
d1p9ea_		294	Methyl parathion hydrolase {Pseudomonas sp. WBC-3	99.43
d2p97a1		200	Hypothetical protein Ava3068 {Anabaena variabilis	99.23
d2i7xa1		514	Cleavage factor two protein 2, CFT2 {Baker's yeast	93.83
d2i7ta1		451	Cleavage and polyadenylation specificity factor su	93.23
d2dkfa1		431	Putative RNA-degradation protein TTHA0252 {Thermus	91.18

>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Coenzyme PQQ synthesis protein B, PqqB
domain: Coenzyme PQQ synthesis protein B, PqqB
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.2e-37  Score=260.94  Aligned_cols=254  Identities=19%  Similarity=0.269  Sum_probs=188.8

Q ss_pred             CCCCCCCCcccccccCCCCCCCccccccccC-CCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhC-----CcC
Q 023686            1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEP-GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWF-----PAY   74 (278)
Q Consensus         1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l-----~~~   74 (278)
                      ||||+++|+|+++|      .|.+|.+|+++ .|...|+++|++|+.   .++..+|||||+++..++.+.-     ...
T Consensus         6 LGtg~~~g~P~~~c------~c~~C~~ar~~~~p~~~R~~ss~~i~~---~g~~~lLiD~G~~~~~ql~~~~~~~~~~~~   76 (304)
T d1xtoa_           6 LGSAAGGGFPQWNC------NCVNCKGYRDGTLKATARTQSSIALSD---DGVHWILCNASPDIRAQLQAFAPMQPARAL   76 (304)
T ss_dssp             EECBCTTCBSCTTC------CSHHHHHHHTTCSCCCCBCBCEEEEES---SSSSEEEESCCTTHHHHHHTCGGGCCCSSS
T ss_pred             EEEeCCCCeecCCC------CCcccchhhcCCCCCCcceeeEEEEEe---CCCeEEEEeCCchHHHHHHhhhhhhhhccc
Confidence            79999999999999      99999999984 467899999999995   3456899999999988886531     124


Q ss_pred             CCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCc-
Q 023686           75 GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEP-  152 (278)
Q Consensus        75 ~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  152 (278)
                      .+.+||+|||||.|.||+.|++.|....     ..++|+++.........+........     ......+..+ .++. 
T Consensus        77 ~~~~i~~I~iTH~H~DH~~GL~~l~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  146 (304)
T d1xtoa_          77 RDTGINAIVLLDSQIDHTTGLLSLREGC-----PHQVWCTDMVHQDLTTGFPLFNMLSH-----WNGGLQWNRIELEGSF  146 (304)
T ss_dssp             SCCSEEEEECSCCCHHHHGGGGGGGGGC-----CEEEEECHHHHHHTTTTSCHHHHHTT-----STTCEEEEECCSSSCB
T ss_pred             CCccceEEEEecCCcCeehhHHHHhhhc-----cccccccchhhhhhhhccchhhhccc-----ccCccceeeeeccCce
Confidence            4688999999999999999999987643     57899999887766554332211111     0111112222 1222 


Q ss_pred             --eeecceEEEEEEecCCCC-----------ceeeEEEEc------cEEEecCCCCCCcchhhcccCCCEEEEcCcCCC-
Q 023686          153 --FTVQDLKITPLPVWHGAG-----------YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPD-  212 (278)
Q Consensus       153 --~~~g~~~i~~~~~~H~~~-----------~~~~g~~i~------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~-  212 (278)
                        ...++++++++++.|...           ..+.+|.+.      ++.|.+|+...++......++++.++.++.+.. 
T Consensus       147 ~i~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (304)
T d1xtoa_         147 VIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWED  226 (304)
T ss_dssp             CCTTCTTEEEEEEECCCCCCTTSTTTTSCCTTSSEEEEEEETTTCCEEEEESCCSCCCHHHHHHHTTCSEEEEECCCSST
T ss_pred             eeccCCCcEEeeeeeccccccccceeccccccceeeEEEecccccccccccccceeeehhhhhhhhccchhhhhhhhccc
Confidence              234689999999999642           135677774      799999999888888888999999999997642 


Q ss_pred             ---------------CCCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhh-HHHHHHHhhhhCCCceEEeecCeEEee
Q 023686          213 ---------------RSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEK-VNEELLKLMETEGLDVQLSYDGLRVPV  276 (278)
Q Consensus       213 ---------------~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~-~~~~~~~~~~~~g~~v~~~~dg~~i~~  276 (278)
                                     ..+..|+++.++++.+++.++++++++|++|.+.... ..++..+. ...  .+.+|+|||+|+|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~H~t~~ea~~~~~~~~~k~lvLtH~sh~~p~~~~~~~~~~~~-~~~--gi~vA~DGm~i~L  303 (304)
T d1xtoa_         227 DEMQRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPERAEV-LRR--GVEVAFDGMSIEL  303 (304)
T ss_dssp             THHHHHTSCSCCSSSSSCCCSSSSSSHHHHGGGCCSSEEEEESBCTTCGGGSTTCHHHHHH-HHT--TEEECCTTCEEEC
T ss_pred             hhhhccccccchhhccCCCCCCCHHHHHHHHHhCCCCcEEEEecCCCCcccccCHHHHHHH-hhC--CcEEeeCCCEEEe
Confidence                           2346799999999999999999999999998764321 11222222 223  5889999999987

PyMOL of d1xtoa_

>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}	Back information, alignment and structure

>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]}	Back information, alignment and structure

>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}	Back information, alignment and structure

>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}	Back information, alignment and structure

>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}	Back information, alignment and structure

>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}	Back information, alignment and structure

>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]}	Back information, alignment and structure

>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]}	Back information, alignment and structure

>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}	Back information, alignment and structure

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure