Citrus Sinensis ID: 023695
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 278 | 2.2.26 [Sep-21-2011] | |||||||
| Q43317 | 325 | Cysteine synthase OS=Citr | N/A | no | 0.989 | 0.846 | 0.858 | 1e-125 | |
| O81154 | 325 | Cysteine synthase OS=Sola | N/A | no | 0.989 | 0.846 | 0.836 | 1e-123 | |
| Q00834 | 325 | Cysteine synthase OS=Spin | N/A | no | 0.992 | 0.849 | 0.833 | 1e-123 | |
| O23733 | 322 | Cysteine synthase OS=Bras | N/A | no | 0.992 | 0.857 | 0.826 | 1e-122 | |
| P38076 | 325 | Cysteine synthase OS=Trit | N/A | no | 0.989 | 0.846 | 0.810 | 1e-120 | |
| P47998 | 322 | Cysteine synthase OS=Arab | yes | no | 0.992 | 0.857 | 0.818 | 1e-120 | |
| O23735 | 324 | Cysteine synthase OS=Bras | N/A | no | 0.992 | 0.851 | 0.818 | 1e-120 | |
| P80608 | 325 | Cysteine synthase OS=Zea | N/A | no | 0.989 | 0.846 | 0.807 | 1e-120 | |
| Q9XEA8 | 325 | Cysteine synthase OS=Oryz | yes | no | 0.989 | 0.846 | 0.796 | 1e-118 | |
| Q9XEA6 | 321 | Cysteine synthase OS=Oryz | no | no | 0.989 | 0.856 | 0.8 | 1e-118 |
| >sp|Q43317|CYSK_CITLA Cysteine synthase OS=Citrullus lanatus PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/275 (85%), Positives = 261/275 (94%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMISDAE KGLITPGESVLIEPTSGNTGIGLAF+AAAK YRLII MPASMSLERR
Sbjct: 50 DRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
ILRAFGAELVLTDPA+GMKGAVQKAEEI AKTPN+Y+LQQFENPANPKIHYETTGPE+W
Sbjct: 110 TILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
+GSGG+IDALVSGIGTGGT+TGAGK+LKE+NPNIKLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 170 RGSGGKIDALVSGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+VN++DEV+QVSS+E+IETAKLLALKEGL VGISSG AAAAAI IAKRPEN
Sbjct: 230 GAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIV +FPSFGERYLS+VLFESV++E E+M FE
Sbjct: 290 AGKLIVAVFPSFGERYLSTVLFESVKRETENMVFE 324
|
Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine. Citrullus lanatus (taxid: 3654) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2 |
| >sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/275 (83%), Positives = 259/275 (94%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLI PGESVLIEPTSGNTG+GLAFMAAAK Y+LIITMP+SMSLERR
Sbjct: 50 DRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IILR F +ELVLTDPAKGMKGA+ KAEEI AKTPN+Y+LQQFENPANPKIHYETTGPE+W
Sbjct: 110 IILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGS G++DAL SGIGTGGTITG+GK+L+E+NPN+KLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 170 KGSNGKVDALASGIGTGGTITGSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVLEVN+ID+VVQVSS+E+IE AKLLALKEGL VGISSG AAAAAI++AKRPEN
Sbjct: 230 GAGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVVIFPSFGERYLSSVLFE+VR+EAE+MT E
Sbjct: 290 AGKLIVVIFPSFGERYLSSVLFETVRREAENMTVE 324
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/276 (83%), Positives = 258/276 (93%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IG+SMI+DAE GLITPGESVLIEPTSGNTGIGLAF+AAAK Y+LIITMPASMSLERR
Sbjct: 50 DRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
ILRAFGAEL+LTDPAKGMKGAVQKAEEI KTPN+Y+LQQFENPANPK+HYETTGPE+W
Sbjct: 110 TILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+GG+ID VSGIGTGGTITGAGK+LKE+NP++KL G+EP ES VLSGGKPGPHKIQG+
Sbjct: 170 KGTGGKIDIFVSGIGTGGTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGL 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+VNIIDEVVQ+SS+E+IE AKLLALKEGL VGISSG AAAAAI++AKRPEN
Sbjct: 230 GAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
AGKLIV +FPSFGERYLSSVLF+SVRKEAESM E+
Sbjct: 290 AGKLIVAVFPSFGERYLSSVLFDSVRKEAESMVIES 325
|
Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/276 (82%), Positives = 255/276 (92%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS+ERR
Sbjct: 47 DRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERR 106
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+W
Sbjct: 107 IILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIW 166
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+ G+ID VSGIGTGGTITGAGK+LKE+NPN+KLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 167 KGTDGKIDGFVSGIGTGGTITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGI 226
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+P VLEV++IDEVVQVSSDE+I+ A+LLALKEGL VGISSG AAAAAI++AKRPEN
Sbjct: 227 GAGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPEN 286
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
AGKL V +FPSFGERYLS+VLF++ RKEAESMTF+A
Sbjct: 287 AGKLFVAVFPSFGERYLSTVLFDATRKEAESMTFQA 322
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/275 (81%), Positives = 254/275 (92%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KG I PG+SVLIEPTSGNTGIGLAFMAAAK YRL++TMPASMS+ERR
Sbjct: 51 DRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERR 110
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL+AFGAEL+LTDP GMKGAVQKAEE+ AKTPN+Y+LQQFEN ANPKIHYETTGPE+W
Sbjct: 111 IILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIW 170
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+GG+ID LVSGIGTGGTITG GK+L+E+NPNIKLYG+EPTES +L+GGKPGPHKIQGI
Sbjct: 171 KGTGGKIDGLVSGIGTGGTITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGI 230
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+V+IIDE +QVSSDE+IE AK LALKEGL VGISSG AAAAAI++A+RPEN
Sbjct: 231 GAGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPEN 290
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKL VV+FPSFGERYLSSVLF S++KEAESM E
Sbjct: 291 AGKLFVVVFPSFGERYLSSVLFHSIKKEAESMVVE 325
|
Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/276 (81%), Positives = 252/276 (91%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERR
Sbjct: 47 DRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+W
Sbjct: 107 IILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIW 166
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 167 KGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGI 226
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPEN
Sbjct: 227 GAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPEN 286
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
AGKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 287 AGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23735|CYSK2_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/276 (81%), Positives = 253/276 (91%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS+ERR
Sbjct: 49 DRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERR 108
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+W
Sbjct: 109 IILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIW 168
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+ G+ID +SGIGTGGTITGAGK+LKE+NPN+KLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 169 KGTEGKIDGFISGIGTGGTITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGI 228
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+P VLE N+IDEVVQVSSDE+I+ A+LLA +EGL VGISSG AAAAAI++AKRPEN
Sbjct: 229 GAGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPEN 288
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
AGKL V +FPSFGERYLS+VLF++ RKEAESMTFEA
Sbjct: 289 AGKLFVAVFPSFGERYLSTVLFDATRKEAESMTFEA 324
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P80608|CYSK_MAIZE Cysteine synthase OS=Zea mays PE=1 SV=2 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/275 (80%), Positives = 253/275 (92%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG SVLIEPTSGNTGIGLAFMAAAK Y+L +TMPASMS+ERR
Sbjct: 50 DRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL+AFGAELVLTDP GMKGAV+KAEEI AKTPN+Y+LQQFENPANPKIHYETTGPE+W
Sbjct: 110 IILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
K + G+ID LVSGIGTGGTITG G++L+E+NPN+KLYG+EP ES VL+GGKPGPHKIQGI
Sbjct: 170 KATAGKIDGLVSGIGTGGTITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+V+++DE +QVSSDEAIETAK LALKEGL VGISSG AAAAA+ +AKRPEN
Sbjct: 230 GAGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKL VV+FPSFGERYLSSVLF+S++KEAESM E
Sbjct: 290 AGKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVE 324
|
Zea mays (taxid: 4577) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/275 (79%), Positives = 253/275 (92%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LI+TMPASMS+ERR
Sbjct: 50 DRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL+AFGAELVLTDP GMKGA+QKA+E+ AK PN+Y+LQQFENPANPKIHYETTGPE+W
Sbjct: 110 IILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
K + G++D LVSGIGTGGT+TG GK+LKE+NP IK+YG+EPTES +LSGG+PGPHKIQGI
Sbjct: 170 KATAGKVDILVSGIGTGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVL+VN++DEVVQVSSDEAI AK LALKEGL VGISSG AA AAI +A+RPEN
Sbjct: 230 GAGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
GKL+VV+FPSFGERYLSSVLFES+++EAE+M FE
Sbjct: 290 KGKLVVVVFPSFGERYLSSVLFESIKREAENMVFE 324
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/275 (80%), Positives = 255/275 (92%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK YRL++TMPASMS+ERR
Sbjct: 47 DRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERR 106
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL+AFGAEL+LTDP GMKGAVQKAEE+ AKT N+++LQQFENPANPKIHYETTGPE+W
Sbjct: 107 IILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIW 166
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+GG++D LVSGIGTGGTITGAG++L+E+NP+IK+YG+EP ES VLSGGKPGPHKIQGI
Sbjct: 167 KGTGGKVDGLVSGIGTGGTITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGI 226
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVL+V++I+E VQVSSDEAIE AK LALKEGL VGISSG AAAAA+ +A+RPEN
Sbjct: 227 GAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPEN 286
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
GKL VV+FPSFGERYLSSVLF+S++KEAE+M E
Sbjct: 287 EGKLFVVVFPSFGERYLSSVLFQSIKKEAENMVVE 321
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 278 | ||||||
| 351727525 | 325 | cysteine synthase [Glycine max] gi|18252 | 0.989 | 0.846 | 0.887 | 1e-128 | |
| 224099811 | 325 | predicted protein [Populus trichocarpa] | 0.989 | 0.846 | 0.883 | 1e-128 | |
| 255552177 | 325 | cysteine synthase, putative [Ricinus com | 0.989 | 0.846 | 0.905 | 1e-128 | |
| 146148622 | 325 | O-acetylserine (thiol)lyase [Glycine soj | 0.989 | 0.846 | 0.876 | 1e-127 | |
| 158263556 | 325 | O-acetylserine(thiol)-lyase [Sesamum ind | 0.989 | 0.846 | 0.894 | 1e-127 | |
| 357480875 | 325 | Cysteine synthase [Medicago truncatula] | 0.989 | 0.846 | 0.894 | 1e-126 | |
| 356573072 | 325 | PREDICTED: cysteine synthase-like [Glyci | 0.989 | 0.846 | 0.858 | 1e-125 | |
| 357480877 | 284 | Cysteine synthase [Medicago truncatula] | 0.989 | 0.968 | 0.894 | 1e-125 | |
| 388503006 | 325 | unknown [Medicago truncatula] | 0.989 | 0.846 | 0.890 | 1e-125 | |
| 255644573 | 325 | unknown [Glycine max] | 0.989 | 0.846 | 0.847 | 1e-124 |
| >gi|351727525|ref|NP_001235628.1| cysteine synthase [Glycine max] gi|18252506|gb|AAL66291.1|AF452451_1 cysteine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/275 (88%), Positives = 264/275 (96%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAA+ Y+LIITMPASMSLERR
Sbjct: 50 DRIGYSMIADAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAARGYKLIITMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY+LQQFENPANPK+HYETTGPE+W
Sbjct: 110 IILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGS G+IDA VSGIGTGGTITGAGK+LKE+NPNIKL G+EP ESPVLSGGKPGPHKIQGI
Sbjct: 170 KGSDGKIDAFVSGIGTGGTITGAGKYLKEQNPNIKLIGVEPVESPVLSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVLEVN++DEV+Q+SSDEAIETAKLLALKEGLFVGISSG AAAAA +IAKRPEN
Sbjct: 230 GAGFIPGVLEVNLLDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAFQIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIV +FPSFGERYLSSVLFESVR+EAESMTFE
Sbjct: 290 AGKLIVAVFPSFGERYLSSVLFESVRREAESMTFE 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099811|ref|XP_002311629.1| predicted protein [Populus trichocarpa] gi|222851449|gb|EEE88996.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/275 (88%), Positives = 266/275 (96%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMS ERR
Sbjct: 50 DRIGYSMIADAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSNERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IILRAFGAELVLT+PAKGMKGAVQKAEEI AKTPNAY+LQQFENP+NPK+HYETTGPE+W
Sbjct: 110 IILRAFGAELVLTNPAKGMKGAVQKAEEIKAKTPNAYILQQFENPSNPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGSGG++DALVSGIGTGGTITGAGK+LKE+NPNIKLYG+EP ESP+LSGGKPGPHKIQGI
Sbjct: 170 KGSGGKVDALVSGIGTGGTITGAGKYLKEQNPNIKLYGVEPVESPILSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVL+V I+DEVVQ+SSDEAIETAKLLALKEGL VGISSG AAAAA++IAKRPEN
Sbjct: 230 GAGFVPGVLDVKIVDEVVQISSDEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVV+FPSFGERYLSSVLF+SV++EAESM FE
Sbjct: 290 AGKLIVVVFPSFGERYLSSVLFDSVKREAESMKFE 324
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552177|ref|XP_002517133.1| cysteine synthase, putative [Ricinus communis] gi|223543768|gb|EEF45296.1| cysteine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/275 (90%), Positives = 266/275 (96%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAEAKGLITPG++VLIEPTSGNTGIGLAFMAAAK YRLIITMPASMSLERR
Sbjct: 50 DRIGYSMIADAEAKGLITPGQNVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFEN ANPKIHYETTGPE+W
Sbjct: 110 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENAANPKIHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGSGG+IDALVSGIGTGGTITGAGK+LKE+NPNIKL+G+EP ESPVLSGGKPGPHKIQGI
Sbjct: 170 KGSGGKIDALVSGIGTGGTITGAGKYLKEQNPNIKLFGVEPVESPVLSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVLEV+IIDEV+QVSS EAIETAKL+ALKEGL VGIS G A AAAI+IAKRPEN
Sbjct: 230 GAGFVPGVLEVDIIDEVIQVSSQEAIETAKLVALKEGLLVGISCGAATAAAIKIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVV+FPSFGERYLSSVLFESVR+EAESMT+E
Sbjct: 290 AGKLIVVVFPSFGERYLSSVLFESVRREAESMTYE 324
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|146148622|gb|ABQ02253.1| O-acetylserine (thiol)lyase [Glycine soja] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/275 (87%), Positives = 261/275 (94%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAA+ Y+LIITMPASMSLERR
Sbjct: 50 DRIGYSMIADAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAARGYKLIITMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY+LQQFENPANPK+HYETTGPE+W
Sbjct: 110 IILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGS G+ DA VSGIGTGGTITGAGK+LKE+NPNIKL G+EP ESPVLSGGKPGPHKIQGI
Sbjct: 170 KGSDGKTDAFVSGIGTGGTITGAGKYLKEQNPNIKLIGVEPVESPVLSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL VN++DEV+Q+SSDEAIETAKLLALKEGLFVGISSG AAAA +IAKRPEN
Sbjct: 230 GAGFIPGVLGVNLLDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAATFQIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIV +FPSFGERYLSSVLFESVR+EAESMTFE
Sbjct: 290 AGKLIVAVFPSFGERYLSSVLFESVRREAESMTFE 324
|
Source: Glycine soja Species: Glycine soja Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|158263556|gb|ABW24494.1| O-acetylserine(thiol)-lyase [Sesamum indicum] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/275 (89%), Positives = 263/275 (95%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAEA+GLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMP+SMSLERR
Sbjct: 50 DRIGYSMITDAEAQGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IILRAFGAELVLTDPAKGMKGAVQKAEEI KTPN+Y+LQQFENPANPKIHYETTGPELW
Sbjct: 110 IILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPELW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+ G+IDA VSGIGTGGTITGAGKFLKE NPNIKLYG+EP ESP+LSGGKPGPHKIQGI
Sbjct: 170 KGANGKIDAFVSGIGTGGTITGAGKFLKEHNPNIKLYGVEPVESPILSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+VN+IDEV+QVSSDEAIETAKLLALKEGL VGISSG AAAAAI IAKRPEN
Sbjct: 230 GAGFIPGVLDVNLIDEVIQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVVIFPSFGERYLSSVLFESVR+EAESMT E
Sbjct: 290 AGKLIVVIFPSFGERYLSSVLFESVRREAESMTVE 324
|
Source: Sesamum indicum Species: Sesamum indicum Genus: Sesamum Family: Pedaliaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480875|ref|XP_003610723.1| Cysteine synthase [Medicago truncatula] gi|217074042|gb|ACJ85381.1| unknown [Medicago truncatula] gi|355512058|gb|AES93681.1| Cysteine synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/275 (89%), Positives = 265/275 (96%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERR
Sbjct: 50 DRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFGAELVLTDPAKGMKGAVQKAEE+LAKTPNAY+LQQFENPANPK+HYETTGPE+W
Sbjct: 110 IILLAFGAELVLTDPAKGMKGAVQKAEELLAKTPNAYILQQFENPANPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+ G+IDA VSGIGTGGTITGAGK+LKE+N NIKL G+EP ESPVLSGGKPGPHKIQGI
Sbjct: 170 KGTDGKIDAFVSGIGTGGTITGAGKYLKEQNSNIKLIGVEPVESPVLSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVLEVN+IDEVVQ+SSDEAIETAKLLALKEGLFVGISSG AAAAAI+IAKRPEN
Sbjct: 230 GAGFVPGVLEVNLIDEVVQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVV+FPSFGERYLSSVLFESVR+EAE+MTFE
Sbjct: 290 AGKLIVVVFPSFGERYLSSVLFESVRREAETMTFE 324
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573072|ref|XP_003554689.1| PREDICTED: cysteine synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/275 (85%), Positives = 262/275 (95%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI DAE KGLITPGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMP+SMSLERR
Sbjct: 50 DRIGYSMIVDAEEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
ILRAFGAELVLTDPAKGMKGAVQKAEEI KTPN+YMLQQFENPANPK+HYETTGPE+W
Sbjct: 110 TILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPANPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGS G++DALVSGIGTGGT+TGAGK+LKE+NP+IKLYGIEP ESP+LSGGKPGPHKIQGI
Sbjct: 170 KGSSGKVDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+V+++DEVVQ+SS+EAIETAKLLALKEGL VGISSG AAAAA++IAKRPEN
Sbjct: 230 GAGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIV +FPSFGERYLSSVLFESV++EAES+ FE
Sbjct: 290 AGKLIVAVFPSFGERYLSSVLFESVKREAESLVFE 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480877|ref|XP_003610724.1| Cysteine synthase [Medicago truncatula] gi|355512059|gb|AES93682.1| Cysteine synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/275 (89%), Positives = 265/275 (96%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERR
Sbjct: 9 DRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERR 68
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFGAELVLTDPAKGMKGAVQKAEE+LAKTPNAY+LQQFENPANPK+HYETTGPE+W
Sbjct: 69 IILLAFGAELVLTDPAKGMKGAVQKAEELLAKTPNAYILQQFENPANPKVHYETTGPEIW 128
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+ G+IDA VSGIGTGGTITGAGK+LKE+N NIKL G+EP ESPVLSGGKPGPHKIQGI
Sbjct: 129 KGTDGKIDAFVSGIGTGGTITGAGKYLKEQNSNIKLIGVEPVESPVLSGGKPGPHKIQGI 188
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVLEVN+IDEVVQ+SSDEAIETAKLLALKEGLFVGISSG AAAAAI+IAKRPEN
Sbjct: 189 GAGFVPGVLEVNLIDEVVQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPEN 248
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVV+FPSFGERYLSSVLFESVR+EAE+MTFE
Sbjct: 249 AGKLIVVVFPSFGERYLSSVLFESVRREAETMTFE 283
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388503006|gb|AFK39569.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/275 (89%), Positives = 264/275 (96%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERR
Sbjct: 50 DRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL AFGAELVLTDPAKGMKGAVQKAEE+LAKTPNAY+LQQFENPANPK+HYETTGPE+W
Sbjct: 110 IILLAFGAELVLTDPAKGMKGAVQKAEELLAKTPNAYILQQFENPANPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KG+ G+IDA VSGIGTGGTITGAGK+LKE+N NIKL G+EP ESPVLSGGKPGPHKIQGI
Sbjct: 170 KGTDGKIDAFVSGIGTGGTITGAGKYLKEQNSNIKLIGVEPVESPVLSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVPGVLEVN+IDEVVQ+SSDEAIETAKLLALKEGLFVGISSG AAAAAI+IAKRPEN
Sbjct: 230 GAGFVPGVLEVNLIDEVVQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVV+FPS GERYLSSVLFESVR+EAE+MTFE
Sbjct: 290 AGKLIVVVFPSLGERYLSSVLFESVRREAETMTFE 324
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255644573|gb|ACU22789.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/275 (84%), Positives = 261/275 (94%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+IG+SMI DAE KGLITPGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMP+SMSLERR
Sbjct: 50 DRIGHSMIVDAEEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERR 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
ILRAFGAELVLTDPAKGMKGAVQKAEEI KTPN+YMLQQFENP NPK+HYETTGPE+W
Sbjct: 110 TILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPTNPKVHYETTGPEIW 169
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
KGS G++DALVSGIGTGGT+TGAGK+LKE+NP+IKLYGIEP ESP+LSGGKPGPHKIQGI
Sbjct: 170 KGSSGKVDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+PGVL+V+++DEVVQ+SS+EAIETAKLLALKEGL VGISSG AAAAA++IAKRPEN
Sbjct: 230 GAGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKL+V +FPSFGERYLSSVLFESV++EAES+ FE
Sbjct: 290 AGKLVVAVFPSFGERYLSSVLFESVKREAESLVFE 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 278 | ||||||
| TAIR|locus:2130419 | 322 | OASA1 "O-acetylserine (thiol) | 0.989 | 0.854 | 0.734 | 1.1e-105 | |
| TAIR|locus:2043964 | 392 | OASB "O-acetylserine (thiol) l | 0.974 | 0.691 | 0.671 | 3.2e-97 | |
| TAIR|locus:2080417 | 433 | OASC "O-acetylserine (thiol) l | 0.974 | 0.625 | 0.664 | 1.1e-96 | |
| TAIR|locus:2114804 | 324 | CYSD1 "cysteine synthase D1" [ | 0.989 | 0.848 | 0.614 | 2e-88 | |
| TAIR|locus:2143814 | 323 | CYSD2 "cysteine synthase D2" [ | 0.985 | 0.848 | 0.613 | 6e-87 | |
| TAIR|locus:2143754 | 323 | DES1 "L-cysteine desulfhydrase | 0.985 | 0.848 | 0.594 | 2.4e-83 | |
| UNIPROTKB|Q1KLZ2 | 376 | CAS1 "L-3-cyanoalanine synthas | 0.960 | 0.710 | 0.558 | 1e-82 | |
| UNIPROTKB|Q76MX2 | 351 | PCAS-1 "Bifunctional L-3-cyano | 0.964 | 0.763 | 0.570 | 2.8e-82 | |
| UNIPROTKB|Q1KLZ1 | 375 | CAS2 "L-3-cyanoalanine synthas | 0.960 | 0.712 | 0.554 | 5.2e-81 | |
| UNIPROTKB|Q43153 | 368 | CYSC "Bifunctional L-3-cyanoal | 0.960 | 0.725 | 0.543 | 3.7e-80 |
| TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 202/275 (73%), Positives = 226/275 (82%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRI
Sbjct: 48 RIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 107
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 167
Query: 124 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
G+GG+ID VS K+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 168 GTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIG 227
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 243
AGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL V +RPENA
Sbjct: 228 AGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA 287
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
GKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 288 GKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
|
|
| TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 182/271 (67%), Positives = 221/271 (81%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+IGYSMI+DAE KGLITPG+SVL+E TSGNTGIGLAF+AA+K Y+LI+TMPASMSLERR+
Sbjct: 118 RIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRV 177
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+LRAFGAELVLT+PAKGM GA+QKAEEIL KTPN+YMLQQF+NPANPKIHYETTGPE+W+
Sbjct: 178 LLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWE 237
Query: 124 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+ G+ID LV+ +F+KE+ P +K+ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 238 DTRGKIDILVAGIGTGGTITGVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIG 297
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 243
AGFVP L++ I+DE + +SS+EAIET+K LAL+EGL V KRPENA
Sbjct: 298 AGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENA 357
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 274
GKLI V+FPSFGERYLS+ LF+S+R+E E M
Sbjct: 358 GKLIAVVFPSFGERYLSTQLFQSIREECEQM 388
|
|
| TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 180/271 (66%), Positives = 218/271 (80%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+IGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR+
Sbjct: 156 RIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 216 LLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWD 275
Query: 124 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+ G++D V+ +F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 276 DTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIG 335
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 243
AGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL V KRPENA
Sbjct: 336 AGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA 395
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 274
GKLI V+FPSFGERYLS+ LF+S+R+E E M
Sbjct: 396 GKLIAVVFPSFGERYLSTPLFQSIREEVEKM 426
|
|
| TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 169/275 (61%), Positives = 210/275 (76%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
++I Y MI DAE KGLITPG+S LIE TSGNTGIGLAF+ AAK Y++++TMP+SMSLER+
Sbjct: 50 ERIAYGMIKDAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERK 109
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IIL A GAE+ LTDP+KG++G + KAEEI +K P++ ML+QF+NP+NP+ HY TTGPE+W
Sbjct: 110 IILLALGAEVHLTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIW 169
Query: 123 KGSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
+ S G +D LV+ +FLKEKN + K+YG+EPTES V+SGGKPG H IQGI
Sbjct: 170 RDSAGEVDILVAGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPGTHLIQGI 229
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPEN 242
GAG +P L+ N++DEV+QV+S EAIETAKLLALKEGL V KRPEN
Sbjct: 230 GAGLIPDNLDFNVLDEVIQVTSVEAIETAKLLALKEGLLVGISSGAAAAAAIKVAKRPEN 289
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVVIFPS GERYLS+ LFESVR EAE++ +
Sbjct: 290 AGKLIVVIFPSGGERYLSTSLFESVRHEAENLPIQ 324
|
|
| TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 168/274 (61%), Positives = 208/274 (75%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+I YSMI DAE KGLITPG+S LIEPT+GNTGIGLA M AA+ Y++I+ MP++MSLERRI
Sbjct: 50 RIAYSMIKDAEDKGLITPGKSTLIEPTAGNTGIGLACMGAARGYKVILVMPSTMSLERRI 109
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
ILRA GAEL L+D G+KG ++K E IL+KTP Y+ QQFENPANP+IHY TTGPE+W+
Sbjct: 110 ILRALGAELHLSDQRIGLKGMLEKTEAILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169
Query: 124 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
S G++D LV+ KFLKE+N +IK+ +EP ESPVLSGG+PGPH IQGIG
Sbjct: 170 DSAGKVDILVAGVGTGGTATGVGKFLKEQNKDIKVCVVEPVESPVLSGGQPGPHLIQGIG 229
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 243
+G VP L++ I+DE++QV+ +EAIETAKLLALKEGL V KRPENA
Sbjct: 230 SGIVPFNLDLTIVDEIIQVAGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENA 289
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
GKLIVV+FPS GERYLS+ LF+S+R EAE++ E
Sbjct: 290 GKLIVVVFPSGGERYLSTKLFDSIRYEAENLPIE 323
|
|
| TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 163/274 (59%), Positives = 205/274 (74%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+I YSMI DAE KGLITPG+S LIE T GNTGIGLA + A++ Y++I+ MP++MSLERRI
Sbjct: 50 RIAYSMIKDAEDKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRI 109
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
ILRA GAE+ LTD + G+KG ++KA+EIL+KTP Y+ QF NP NP+IHY TTGPE+W+
Sbjct: 110 ILRALGAEVHLTDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWR 169
Query: 124 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
S G++D LV+ KFLKEKN +IK+ +EP+ES VLSGGKPGPH IQGIG
Sbjct: 170 DSAGKVDILVAGVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPGPHLIQGIG 229
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 243
+G +P L+++I+DE++QV+ +EAIET KLLA+KEGL V KRPEN
Sbjct: 230 SGEIPANLDLSIVDEIIQVTGEEAIETTKLLAIKEGLLVGISSGASAAAALKVAKRPENV 289
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
GKLIVVIFPS GERYLS+ LFESVR EAE++ E
Sbjct: 290 GKLIVVIFPSGGERYLSTELFESVRYEAENLPVE 323
|
|
| UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 149/267 (55%), Positives = 200/267 (74%)
Query: 8 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 67
SMI+DAE KGLITPGE++LIEPTSGN GI +AFMAA + Y++++TMP+ SLERR+ +R
Sbjct: 102 SMINDAEEKGLITPGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRVCMRC 161
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 127
FGA+L+LTDP KGM G V+KA ++L TPNAYMLQQF NPAN K+H+ETTGPE+W+ + G
Sbjct: 162 FGADLILTDPTKGMGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWEDTNG 221
Query: 128 RIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFV 187
++D V ++LK KNPN+++YG+EP ES VL+GGKPGPH I G G GF
Sbjct: 222 QVDIFVMGIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSIMGNGVGFK 281
Query: 188 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENAGKLI 247
P +L++++++ V++V+S++A+ A+ LALKEGL V K+PEN GKLI
Sbjct: 282 PDILDLDMLERVIEVTSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENKGKLI 341
Query: 248 VVIFPSFGERYLSSVLFESVRKEAESM 274
V + PSFGERYLSSVLF+ +R+EAE+M
Sbjct: 342 VTVHPSFGERYLSSVLFQELRQEAENM 368
|
|
| UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 153/268 (57%), Positives = 198/268 (73%)
Query: 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66
++MI+DAE KGLITPG++ LIEPTSGN GI +AFMAA K Y++I+TMP+ SLERR+ +R
Sbjct: 78 FAMINDAEKKGLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMR 137
Query: 67 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG 126
AFGA+LV TDP KGM G ++KA ++L TPNAYMLQQF NPAN + H+ETTGPE+W+ +
Sbjct: 138 AFGADLVTTDPTKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWEDTQ 197
Query: 127 GRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGF 186
G +D V ++LK KNPN+K+YGIEPTES VL+GG PGPH+I G G GF
Sbjct: 198 GNVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPGPHEITGNGVGF 257
Query: 187 VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENAGKL 246
P +L++++++EV+ VSS+E++ A+ LALKEGL V RPEN GKL
Sbjct: 258 KPDILDMDVMEEVLMVSSEESVNMARELALKEGLMVGISSGANTVAALRLANRPENKGKL 317
Query: 247 IVVIFPSFGERYLSSVLFESVRKEAESM 274
IV I PSFGERYLSSVL+E +RKEA++M
Sbjct: 318 IVTIHPSFGERYLSSVLYEDIRKEAQNM 345
|
|
| UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 148/267 (55%), Positives = 197/267 (73%)
Query: 8 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 67
SMI+DAE KGLITPGE+ LIEPTSGN GI +AFMAA K Y++++TMP+ SLERR+ +R
Sbjct: 103 SMINDAEEKGLITPGETTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVCMRC 162
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 127
FGA+L+LTDP KGM G V+KA ++L TPNA+MLQQF NPAN K+H+ETTGPE+W+ + G
Sbjct: 163 FGADLILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNG 222
Query: 128 RIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFV 187
++D V ++LK KNPN+++YG+EP ES VL+GGKPGPH I G G GF
Sbjct: 223 QVDIFVMGIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSITGNGVGFK 282
Query: 188 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENAGKLI 247
P +L++++++ V++V S++A+ A+ LALKEGL V K+PEN GKLI
Sbjct: 283 PDILDMDMMERVIEVRSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENKGKLI 342
Query: 248 VVIFPSFGERYLSSVLFESVRKEAESM 274
V + SFGERYLSSVLF+ +R+EAE+M
Sbjct: 343 VTVHASFGERYLSSVLFQDLRQEAENM 369
|
|
| UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 145/267 (54%), Positives = 199/267 (74%)
Query: 8 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 67
+MI DAE KGLI+PG++VLIEPTSGN GI +AFMAA K Y++++TMP+ S+ERR+++RA
Sbjct: 96 AMIEDAEKKGLISPGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRVVMRA 155
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 127
FGA+L+LTDP KGM G V+KA ++L TP+ +MLQQF NPAN ++H+ETTGPE+W+ + G
Sbjct: 156 FGADLILTDPDKGMGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWEDTQG 215
Query: 128 RIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFV 187
++D V ++LK +NPN+K+YG+EP ES +L+GGKPGPH I G G GF
Sbjct: 216 KVDIFVMGIGSGGTVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFK 275
Query: 188 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENAGKLI 247
P +L+++++D V++V SD+A++ A+ LAL+EGL V KRPEN GKLI
Sbjct: 276 PEILDMDVMDAVLEVKSDDAVKMARQLALQEGLLVGISSGANTIAALDLAKRPENKGKLI 335
Query: 248 VVIFPSFGERYLSSVLFESVRKEAESM 274
V I PSFGERYLSS LF+ +R+EAE+M
Sbjct: 336 VTIHPSFGERYLSSALFKELREEAENM 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0A535 | CYSK_MYCBO | 2, ., 5, ., 1, ., 4, 7 | 0.5714 | 0.9460 | 0.8483 | yes | no |
| P0A534 | CYSK_MYCTU | 2, ., 5, ., 1, ., 4, 7 | 0.5714 | 0.9460 | 0.8483 | yes | no |
| P57171 | CYSK_BUCAI | 2, ., 5, ., 1, ., 4, 7 | 0.5407 | 0.9352 | 0.8253 | yes | no |
| P63871 | CYSK_STAAN | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| P63872 | CYSK_STAAW | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| P37887 | CYSK_BACSU | 2, ., 5, ., 1, ., 4, 7 | 0.5606 | 0.9352 | 0.8441 | yes | no |
| P31300 | CYSKP_CAPAN | 2, ., 5, ., 1, ., 4, 7 | 0.7279 | 0.9424 | 0.7005 | N/A | no |
| P45040 | CYSK_HAEIN | 2, ., 5, ., 1, ., 4, 7 | 0.5477 | 0.9460 | 0.8322 | yes | no |
| P63870 | CYSK_STAAM | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| P47998 | CYSK1_ARATH | 2, ., 5, ., 1, ., 4, 7 | 0.8188 | 0.9928 | 0.8571 | yes | no |
| O81155 | CYSKP_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.7536 | 0.9784 | 0.7046 | N/A | no |
| Q8KA48 | CYSK_BUCAP | 2, ., 5, ., 1, ., 4, 7 | 0.5444 | 0.9352 | 0.8074 | yes | no |
| P0ABK6 | CYSK_ECO57 | 2, ., 5, ., 1, ., 4, 7 | 0.5251 | 0.9640 | 0.8297 | N/A | no |
| P38076 | CYSK_WHEAT | 2, ., 5, ., 1, ., 4, 7 | 0.8109 | 0.9892 | 0.8461 | N/A | no |
| P0ABK5 | CYSK_ECOLI | 4, ., 5, ., 1, ., 5 | 0.5251 | 0.9640 | 0.8297 | N/A | no |
| Q6GJF8 | CYSK_STAAR | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| Q6GBX5 | CYSK_STAAS | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| O81154 | CYSK_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.8363 | 0.9892 | 0.8461 | N/A | no |
| Q5HIG2 | CYSK_STAAC | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| P0A1E4 | CYSK_SALTI | 2, ., 5, ., 1, ., 4, 7 | 0.5359 | 0.9640 | 0.8297 | N/A | no |
| P32260 | CYSKP_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.7236 | 0.9892 | 0.7180 | N/A | no |
| P0A1E3 | CYSK_SALTY | 2, ., 5, ., 1, ., 4, 7 | 0.5359 | 0.9640 | 0.8297 | yes | no |
| Q8CMT6 | CYSK_STAES | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| Q5XAQ3 | CYSK_STRP6 | 2, ., 5, ., 1, ., 4, 7 | 0.5492 | 0.9352 | 0.8306 | N/A | no |
| P73410 | CYSK_SYNY3 | 2, ., 5, ., 1, ., 4, 7 | 0.6060 | 0.9496 | 0.8461 | N/A | no |
| O32978 | CYSK_MYCLE | 2, ., 5, ., 1, ., 4, 7 | 0.5779 | 0.9352 | 0.8387 | yes | no |
| Q7DDL5 | CYSK_NEIMB | 2, ., 5, ., 1, ., 4, 7 | 0.5399 | 0.9388 | 0.8419 | yes | no |
| Q43317 | CYSK_CITLA | 2, ., 5, ., 1, ., 5, 2 | 0.8581 | 0.9892 | 0.8461 | N/A | no |
| Q00834 | CYSK_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.8333 | 0.9928 | 0.8492 | N/A | no |
| P80608 | CYSK_MAIZE | 2, ., 5, ., 1, ., 4, 7 | 0.8072 | 0.9892 | 0.8461 | N/A | no |
| Q9XEA8 | CYSK2_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.7963 | 0.9892 | 0.8461 | yes | no |
| P71128 | CYSM_CAMJE | 2, ., 5, ., 1, ., 4, 7 | 0.4790 | 0.9244 | 0.8595 | yes | no |
| O23733 | CYSK1_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8260 | 0.9928 | 0.8571 | N/A | no |
| Q5HRP1 | CYSK_STAEQ | 2, ., 5, ., 1, ., 4, 7 | 0.5378 | 0.9280 | 0.8322 | yes | no |
| Q9XEA6 | CYSK1_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8 | 0.9892 | 0.8566 | no | no |
| O23735 | CYSK2_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8188 | 0.9928 | 0.8518 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pg.C_LG_VIII001376 | O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pm.C_LG_XV0472 | serine O-acetyltransferase (EC-2.3.1.30) (293 aa) | • | • | • | • | 0.942 | |||||
| estExt_fgenesh4_pg.C_410108 | serine O-acetyltransferase (EC-2.3.1.30) (294 aa) | • | • | • | • | 0.942 | |||||
| estExt_fgenesh4_pm.C_LG_I1139 | serine O-acetyltransferase (EC-2.3.1.30) (334 aa) | • | • | • | • | 0.938 | |||||
| estExt_fgenesh4_pg.C_LG_V0392 | hypothetical protein (395 aa) | • | • | • | 0.924 | ||||||
| gw1.IX.3567.1 | sulfite reductase (EC-1.8.7.1) (576 aa) | • | • | 0.917 | |||||||
| gw1.I.1513.1 | sulfite reductase (EC-1.8.7.1) (634 aa) | • | • | 0.915 | |||||||
| estExt_Genewise1_v1.C_LG_I4741 | phosphateglycerate kinase (EC-2.5.1.47) (424 aa) | • | • | • | • | 0.908 | |||||
| gw1.XIV.1323.1 | cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa) | • | • | • | 0.902 | ||||||
| grail3.0039007102 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa) | • | • | • | 0.902 | ||||||
| gw1.10449.1.1 | annotation not avaliable (181 aa) | • | • | • | 0.901 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 278 | |||
| PLN02565 | 322 | PLN02565, PLN02565, cysteine synthase | 0.0 | |
| TIGR01136 | 299 | TIGR01136, cysKM, cysteine synthase | 1e-149 | |
| TIGR01139 | 298 | TIGR01139, cysK, cysteine synthase A | 1e-146 | |
| PLN00011 | 323 | PLN00011, PLN00011, cysteine synthase | 1e-143 | |
| PLN03013 | 429 | PLN03013, PLN03013, cysteine synthase | 1e-140 | |
| cd01561 | 291 | cd01561, CBS_like, CBS_like: This subgroup include | 1e-138 | |
| PLN02556 | 368 | PLN02556, PLN02556, cysteine synthase/L-3-cyanoala | 1e-136 | |
| COG0031 | 300 | COG0031, CysK, Cysteine synthase [Amino acid trans | 1e-128 | |
| PRK10717 | 330 | PRK10717, PRK10717, cysteine synthase A; Provision | 2e-98 | |
| PRK11761 | 296 | PRK11761, cysM, cysteine synthase B; Provisional | 2e-91 | |
| TIGR01138 | 290 | TIGR01138, cysM, cysteine synthase B | 1e-82 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 3e-76 | |
| TIGR03945 | 304 | TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio | 9e-64 | |
| cd00640 | 244 | cd00640, Trp-synth-beta_II, Tryptophan synthase be | 2e-62 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 2e-54 | |
| PLN02356 | 423 | PLN02356, PLN02356, phosphateglycerate kinase | 2e-26 | |
| cd01562 | 304 | cd01562, Thr-dehyd, Threonine dehydratase: The fir | 2e-16 | |
| COG1171 | 347 | COG1171, IlvA, Threonine dehydratase [Amino acid t | 3e-16 | |
| TIGR01127 | 380 | TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m | 1e-11 | |
| TIGR01124 | 499 | TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b | 3e-10 | |
| cd01563 | 324 | cd01563, Thr-synth_1, Threonine synthase is a pyri | 1e-09 | |
| PRK06815 | 317 | PRK06815, PRK06815, hypothetical protein; Provisio | 7e-09 | |
| PRK12483 | 521 | PRK12483, PRK12483, threonine dehydratase; Reviewe | 4e-07 | |
| PRK08198 | 404 | PRK08198, PRK08198, threonine dehydratase; Provisi | 7e-07 | |
| PRK06382 | 406 | PRK06382, PRK06382, threonine dehydratase; Provisi | 2e-06 | |
| COG0498 | 411 | COG0498, ThrC, Threonine synthase [Amino acid tran | 4e-06 | |
| TIGR02079 | 409 | TIGR02079, THD1, threonine dehydratase | 1e-05 | |
| PRK08526 | 403 | PRK08526, PRK08526, threonine dehydratase; Provisi | 4e-05 | |
| PRK09224 | 504 | PRK09224, PRK09224, threonine dehydratase; Reviewe | 1e-04 | |
| PRK08246 | 310 | PRK08246, PRK08246, threonine dehydratase; Provisi | 1e-04 | |
| cd06446 | 365 | cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr | 2e-04 | |
| PRK06110 | 322 | PRK06110, PRK06110, hypothetical protein; Provisio | 0.001 | |
| PRK08639 | 420 | PRK08639, PRK08639, threonine dehydratase; Validat | 0.002 | |
| PRK08206 | 399 | PRK08206, PRK08206, diaminopropionate ammonia-lyas | 0.003 | |
| PRK07048 | 321 | PRK07048, PRK07048, serine/threonine dehydratase; | 0.004 |
| >gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase | Back alignment and domain information |
|---|
Score = 508 bits (1309), Expect = 0.0
Identities = 243/275 (88%), Positives = 264/275 (96%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+IGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERRI
Sbjct: 48 RIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRI 107
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
IL AFGAELVLTDPAKGMKGAVQKAEEILAKTPN+Y+LQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWK 167
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
G+GG++DA VSGIGTGGTITGAGK+LKE+NP+IKLYG+EP ES VLSGGKPGPHKIQGIG
Sbjct: 168 GTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIG 227
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGF+PGVL+V+++DEVVQVSSDEAIETAKLLALKEGL VGISSG AAAAAI+IAKRPENA
Sbjct: 228 AGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENA 287
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
GKLIVVIFPSFGERYLSSVLFESV+KEAE+M FE
Sbjct: 288 GKLIVVIFPSFGERYLSSVLFESVKKEAENMVFEP 322
|
Length = 322 |
| >gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase | Back alignment and domain information |
|---|
Score = 420 bits (1081), Expect = e-149
Identities = 168/261 (64%), Positives = 214/261 (81%), Gaps = 1/261 (0%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+I SMI DAE +GL+ PG+ +IE TSGNTGI LA +AAAK Y+LI+TMP +MSLERR
Sbjct: 40 RIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRK 98
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+LRA+GAEL+LT +GMKGA+ KAEE+ A+T ML QFENPANP+ HY+TTGPE+W+
Sbjct: 99 LLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWR 158
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+ GRID V+G+GTGGTITG G++LKE+NPNIK+ +EP ESPVLSGG+PGPHKIQGIG
Sbjct: 159 DTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIG 218
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGF+P +L++++IDEV+ VS ++AIETA+ LA +EG+ VGISSG A AAA+++AKR ENA
Sbjct: 219 AGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENA 278
Query: 244 GKLIVVIFPSFGERYLSSVLF 264
K+IV I P GERYLS+ LF
Sbjct: 279 DKVIVAILPDTGERYLSTGLF 299
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299 |
| >gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A | Back alignment and domain information |
|---|
Score = 410 bits (1057), Expect = e-146
Identities = 173/262 (66%), Positives = 217/262 (82%), Gaps = 3/262 (1%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+I +MI DAE +GL+ PG+ ++EPTSGNTGI LA +AAA+ Y+LI+TMP +MS+ERR
Sbjct: 39 RIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRK 97
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELW 122
+L+A+GAELVLT A+GMKGA+ KAEEI A TPN+Y MLQQFENPANP+IH +TTGPE+W
Sbjct: 98 LLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIW 157
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
+ + G++DA V+G+GTGGTITG G+ LKE+ PNIK+ +EP ESPVLSGGKPGPHKIQGI
Sbjct: 158 RDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGI 217
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGF+P L ++IDEV+ VS +EAIETA+ LA +EG+ VGISSG A AAA+++AKRPE
Sbjct: 218 GAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE- 276
Query: 243 AGKLIVVIFPSFGERYLSSVLF 264
KLIVVI PS GERYLS+ LF
Sbjct: 277 PDKLIVVILPSTGERYLSTPLF 298
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298 |
| >gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase | Back alignment and domain information |
|---|
Score = 405 bits (1041), Expect = e-143
Identities = 190/275 (69%), Positives = 233/275 (84%)
Query: 3 QKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
+I YSMI DAE KGLITPG+S LIE T+GNTGIGLA + AA+ Y++I+ MP++MSLERR
Sbjct: 49 DRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERR 108
Query: 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
IILRA GAE+ LTD + G+KG ++KAEEIL+KTP Y+ QQFENPANP+IHY TTGPE+W
Sbjct: 109 IILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIW 168
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
+ S G++D LV+G+GTGGT TG GKFLKEKN +IK+ +EP ES VLSGG+PGPH IQGI
Sbjct: 169 RDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGI 228
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
G+G +P L++ I+DE++QV+ +EAIETAKLLALKEGL VGISSG AAAAA+++AKRPEN
Sbjct: 229 GSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPEN 288
Query: 243 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
AGKLIVVIFPS GERYLS+ LFESVR EAE++ E
Sbjct: 289 AGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323
|
Length = 323 |
| >gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase | Back alignment and domain information |
|---|
Score = 401 bits (1030), Expect = e-140
Identities = 189/274 (68%), Positives = 229/274 (83%), Gaps = 1/274 (0%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+IGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR+
Sbjct: 156 RIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 216 LLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWD 275
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 276 DTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIG 335
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPENA
Sbjct: 336 AGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA 395
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
GKLI V + G R + + S+ +
Sbjct: 396 GKLIAVSLFASG-RDIYTPRCSSLSGKRWRKCSL 428
|
Length = 429 |
| >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-138
Identities = 155/259 (59%), Positives = 198/259 (76%), Gaps = 4/259 (1%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+I MI DAE +GL+ PG + +IEPTSGNTGIGLA +AAAK YR II MP +MS E+R
Sbjct: 35 RIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRK 93
Query: 64 ILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
+LRA GAE++LT A+ GMKGA+ KA E+ A+TPNA+ L QFENPANP+ HYETT PE+
Sbjct: 94 LLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEI 153
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 181
W+ G++DA V+G+GTGGTITG ++LKEKNPN+++ G++P S + SGG PGPHKI+G
Sbjct: 154 WEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEG 213
Query: 182 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 241
IGAGF+P L+ ++IDEVV+VS +EA A+ LA +EGL VG SSG A AAA+++AKR
Sbjct: 214 IGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG 273
Query: 242 NAGKLIVVIFPSFGERYLS 260
GK IV I P GERYLS
Sbjct: 274 -PGKTIVTILPDSGERYLS 291
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291 |
| >gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Score = 388 bits (997), Expect = e-136
Identities = 170/267 (63%), Positives = 219/267 (82%)
Query: 8 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 67
+MI DAE K LITPG++ LIEPTSGN GI LAFMAA K Y++I+TMP+ SLERR+ +RA
Sbjct: 96 AMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRA 155
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 127
FGAELVLTDP KGM G V+KA E+L TP+A+MLQQF NPAN ++H+ETTGPE+W+ + G
Sbjct: 156 FGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLG 215
Query: 128 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFV 187
++D V GIG+GGT++G GK+LK KNPN+K+YG+EP ES VL+GGKPGPH I G G GF
Sbjct: 216 QVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFK 275
Query: 188 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLI 247
P +L+++++++V++VSS++A+ A+ LALKEGL VGISSG AA+ +AK PEN GKLI
Sbjct: 276 PDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLI 335
Query: 248 VVIFPSFGERYLSSVLFESVRKEAESM 274
V + PSFGERYLSSVLF+ +RKEAE+M
Sbjct: 336 VTVHPSFGERYLSSVLFQELRKEAENM 362
|
Length = 368 |
| >gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 365 bits (940), Expect = e-128
Identities = 153/258 (59%), Positives = 199/258 (77%), Gaps = 5/258 (1%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I MI DAE +GL+ PG ++E TSGNTGI LA +AAAK YRLII MP +MS ERR +
Sbjct: 45 IALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKL 103
Query: 65 LRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELW 122
LRA GAE++LT A G MKGA+++A+E+ A+ P A L QFENPANP+ HYETTGPE+W
Sbjct: 104 LRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIW 163
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
+ + G++DA V+G+GTGGTITG ++LKE+NPN+++ ++P S +LSGG+ GPHKI+GI
Sbjct: 164 QQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGI 222
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GAGFVP L++++IDEV++VS +EAI TA+ LA +EGL VGISSG A AAA+++AK
Sbjct: 223 GAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELP- 281
Query: 243 AGKLIVVIFPSFGERYLS 260
AGK IV I P GERYLS
Sbjct: 282 AGKTIVTILPDSGERYLS 299
|
Length = 300 |
| >gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 290 bits (746), Expect = 2e-98
Identities = 115/275 (41%), Positives = 165/275 (60%), Gaps = 15/275 (5%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+ ++I DAE +GL+ PG ++E T+GNTGIGLA +AAA+ Y+ +I MP + S E++
Sbjct: 46 RAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKD 104
Query: 64 ILRAFGAELVLT------DPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYET 116
+LRA GAELVL +P +KGA + AEE++A PN A QF+NPAN + HYET
Sbjct: 105 LLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYET 164
Query: 117 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP----VLSG- 171
TGPE+W+ + G++D V +GTGGT+ G ++LKE NP +K+ +PT S +G
Sbjct: 165 TGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGE 224
Query: 172 -GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 230
G +GIG G + LE ID+ +++ +EA+ TA L +EGL +G SSG
Sbjct: 225 LKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINV 284
Query: 231 AAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFE 265
AAA+ +A+ G IV I GERY S +
Sbjct: 285 AAALRLARE-LGPGHTIVTILCDSGERYQSKLFNP 318
|
Length = 330 |
| >gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 2e-91
Identities = 119/263 (45%), Positives = 164/263 (62%), Gaps = 17/263 (6%)
Query: 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66
SMI AE +G I PG+ LIE TSGNTGI LA +AA K YR+ + MP +MS ERR +R
Sbjct: 48 LSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMR 106
Query: 67 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG 126
A+GAEL+L +GM+GA A ++ A+ +L QF NP NP HYETTGPE+W+ +
Sbjct: 107 AYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTE 165
Query: 127 GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI---G 183
GRI VS +GT GTI G ++LKE+NP +++ G++P E I GI
Sbjct: 166 GRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGS----------SIPGIRRWP 215
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
++P + + + +D V+ VS EA T + LA +EG+F G+SSGGA AAA+ IA+ NA
Sbjct: 216 EEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARENPNA 275
Query: 244 GKLIVVIFPSFGERYLSSVLFES 266
+IV I G+RYLS+ +F +
Sbjct: 276 --VIVAIICDRGDRYLSTGVFPA 296
|
Length = 296 |
| >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 1e-82
Identities = 113/257 (43%), Positives = 165/257 (64%), Gaps = 11/257 (4%)
Query: 8 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 67
SMI +AE +G I PG+ VLIE TSGNTGI LA +AA K YR+ + MP +MS ER+ +RA
Sbjct: 45 SMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRA 103
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 127
+GAEL+L +GM+GA A E+ + L QF NP NP HY +TGPE+W+ +GG
Sbjct: 104 YGAELILVTKEEGMEGARDLALELANRGEGKL-LDQFNNPDNPYAHYTSTGPEIWQQTGG 162
Query: 128 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGAGFV 187
RI VS +GT GTI G +FLKE+NP +++ G++P E + G I+ ++
Sbjct: 163 RITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYL 215
Query: 188 PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLI 247
PG+ + +++D V+ + +A T + LA++EG+F G+SSGGA AAA+ +A+ E ++
Sbjct: 216 PGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELPDAVV 273
Query: 248 VVIFPSFGERYLSSVLF 264
V I G+RYLS+ +F
Sbjct: 274 VAIICDRGDRYLSTGVF 290
|
CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-76
Identities = 109/269 (40%), Positives = 164/269 (60%), Gaps = 11/269 (4%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+I MI DAEA G + PG +IEPTSGNTGIGLA +AA K Y+ II +P MS E+
Sbjct: 44 RIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVD 102
Query: 64 ILRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 120
+L+A GAE+V T A + + A+ ++ + P A++L Q+ NP+NP HY+ TGPE
Sbjct: 103 VLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE 162
Query: 121 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP------ 174
+ + G++D V+G GTGGTITG ++LKE NP ++ G +P E +L+ +
Sbjct: 163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP-EGSILAQPENLNKTGR 221
Query: 175 GPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 234
P+K++GIG F+P VL+ ++DE ++ E+ + A+ L +EGL VG SSG A AA+
Sbjct: 222 TPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAAL 281
Query: 235 EIAKRPENAGKLIVVIFPSFGERYLSSVL 263
+ A+ ++IVV+ P Y++ L
Sbjct: 282 KAAEDELTEDQVIVVLLPDSIRNYMTKFL 310
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 9e-64
Identities = 96/260 (36%), Positives = 143/260 (55%), Gaps = 8/260 (3%)
Query: 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66
++ A +G ITPG + +IE +SGN GI LA + A K R I + ++S + +LR
Sbjct: 43 LYILEAAIKRGRITPG-TTIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKLLR 101
Query: 67 AFGAELVLT---DPAKGMKGA-VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
A+GAE+ D G G + + E+LA P+AY Q+ NP NP+ HY TG E+
Sbjct: 102 AYGAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIA 161
Query: 123 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 182
+ + +D L G+ T GT+ G + L+E+ PN K+ ++ S V+ GG PG I G+
Sbjct: 162 R-AFPPLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVDAVGS-VIFGGPPGRRHIPGL 219
Query: 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 242
GA VP +L+ ++ID+VV V + + + LA +EG+ G SSG AA + R
Sbjct: 220 GASVVPELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPRIP- 278
Query: 243 AGKLIVVIFPSFGERYLSSV 262
G +V I P GERYL +V
Sbjct: 279 PGSTVVAILPDRGERYLDTV 298
|
Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304 |
| >gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 2e-62
Identities = 91/249 (36%), Positives = 125/249 (50%), Gaps = 41/249 (16%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++I AE +G + G V+IE T GNTGI LA AA + I MP S E+
Sbjct: 34 GALNLILLAEEEGKLPKG--VIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQ 91
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+RA GAE+VL A+ A+E+ + P AY + QF+NPAN T G E+ +
Sbjct: 92 MRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQ 148
Query: 125 SGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
GG + DA+V +G GG I G + LKE PN+K+ G+EP
Sbjct: 149 LGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP-------------------- 188
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
EVV VS +EA+E +LLA +EG+ V SS A AAA+++AK+
Sbjct: 189 --------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-GK 233
Query: 244 GKLIVVIFP 252
GK +VVI
Sbjct: 234 GKTVVVILT 242
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-54
Identities = 86/261 (32%), Positives = 131/261 (50%), Gaps = 22/261 (8%)
Query: 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66
++ A +G + ++E +SGNTG LA AA ++ I +P S + +++R
Sbjct: 41 AYLLLRALERG------ATVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMR 94
Query: 67 AFGAELVL---TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
A GAE++L ++A E+LA L Q+ NP N Y+T G E+ +
Sbjct: 95 ALGAEVILVVSEGDYDDALELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILE 153
Query: 124 -GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG------KPGP 176
G DA+V +G GG G + LKE P I++ G+EP +P L+ P P
Sbjct: 154 QLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKP 213
Query: 177 HKIQGIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 231
I G+G G + G L + +IDE V VS +EA+E +LLA +EG+ V SS A A
Sbjct: 214 TTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRLLARREGILVEPSSAAALA 273
Query: 232 AAIEIAKRPENAGKLIVVIFP 252
AA+ +A+ GK +VV+
Sbjct: 274 AALRLAELELGKGKRVVVVLT 294
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 88/315 (27%), Positives = 137/315 (43%), Gaps = 60/315 (19%)
Query: 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
++ +I +A G + PG V+ E ++G+T I LA +A A + + +P +++E+
Sbjct: 86 RVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQ 144
Query: 64 ILRAFGAELVLTDP-------------------AKGMKGAVQKAEEILAK---------- 94
IL A GA + P A + +K E
Sbjct: 145 ILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCIS 204
Query: 95 ------------TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 142
+ QFEN AN + HYE TGPE+W+ + G +DA V+ GTGGT+
Sbjct: 205 EEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTL 264
Query: 143 TGAGKFLKEKNPNIKLYGIEPTESPVLSG-------------GK----PGPHKIQGIGAG 185
G +FL+EKNPNIK + I+P S + + G+ P +GIG
Sbjct: 265 AGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGIN 324
Query: 186 FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK 245
+ + +D + + EA+E ++ L +GLFVG SS A+ +A+ G
Sbjct: 325 RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGH 383
Query: 246 LIVVIFPSFGERYLS 260
IV I G R+LS
Sbjct: 384 TIVTILCDSGMRHLS 398
|
Length = 423 |
| >gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-16
Identities = 76/284 (26%), Positives = 114/284 (40%), Gaps = 60/284 (21%)
Query: 1 MLQKIG-------YSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRL 49
LQK G Y+ + + AKG++ ++GN G+A+ A
Sbjct: 40 NLQKTGSFKIRGAYNKLLSLSEEERAKGVVAA--------SAGNHAQGVAYAAKLLGIPA 91
Query: 50 IITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPAN 109
I MP + + RA+GAE+VL A KA E LA+ + F++P
Sbjct: 92 TIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARE-LAEEEGLTFIHPFDDP-- 146
Query: 110 PKIHYETTGPELWKGSG----------GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159
++ G G +DA+ +G GG I G +K +PN K+
Sbjct: 147 ----------DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVI 196
Query: 160 GIEPTESPVLS----GGKPGPHKIQGI----GAGFVPGVLEVNII----DEVVQVSSDEA 207
G+EP +P ++ GKP A PG L II D+VV VS DE
Sbjct: 197 GVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEI 256
Query: 208 IETAKLLALKEGLFV-GISSGGAAAAAIEIAKRPENAGKLIVVI 250
LL +E L +G A AA+ + + + GK +VV+
Sbjct: 257 AAAMLLLFEREKLVAEP--AGALALAALL-SGKLDLKGKKVVVV 297
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304 |
| >gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-16
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 32/241 (13%)
Query: 30 TSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK 87
++GN G+A+ AAK+ + I MP + + R +GAE++L A
Sbjct: 81 SAGNHAQGVAY--AAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNF--DDAYAA 136
Query: 88 AEEILAKTPNAYMLQQFENPANPKIH----YETTGPELWKGSGGRIDALVSGIGTGGTIT 143
AEE LA+ + F++P T E+ + DA+ +G GG I+
Sbjct: 137 AEE-LAEEEGLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLIS 190
Query: 144 GAGKFLKEKNPNIKLYGIEPTESPVL-----SGGKP----GPHKI-QGIGAGFVPGVLEV 193
G LK +P IK+ G+EP +P + +G I G+ PG L
Sbjct: 191 GIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK-RPGDLTF 249
Query: 194 NII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
I+ D++V V DE + L + + +G A AA+ K GK +VV
Sbjct: 250 EILRELVDDIVLVDEDEICAAMRDLFERTKIIAE-PAGALALAALLAGKIEPLQGKTVVV 308
Query: 250 I 250
I
Sbjct: 309 I 309
|
Length = 347 |
| >gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 30 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV---- 85
++GN G+A+ A + +I MP S + +++GAE++L G
Sbjct: 55 SAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVIL-------HGDDYDEA 107
Query: 86 QKAEEILAKTPNAYMLQQFENP----ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 141
LA+ + F++ I E +D ++ +G GG
Sbjct: 108 YAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIME------DIPDVDTVIVPVGGGGL 161
Query: 142 ITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHK-IQGIGAGFV---PGVLEV 193
I+G K+ NPN+K+ G+E +P L GK + ++ I G PG L
Sbjct: 162 ISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTF 221
Query: 194 NII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
NII D+VV V +E I A L L+ + +G A AA+ K K+ VV
Sbjct: 222 NIIKEYVDDVVTV-DEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVDVKGKKIAVV 280
Query: 250 I 250
+
Sbjct: 281 L 281
|
A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380 |
| >gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 48/226 (21%)
Query: 7 YSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
Y+ ++ + +A+G+I ++GN G+AF AA + +I MP + +
Sbjct: 53 YNKMAQLSPEQKARGVIAA--------SAGNHAQGVAFSAARLGLKALIVMPETTPDIKV 104
Query: 63 IILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP---ANPKIHYE 115
+R FG E+VL D AK KA E L++ + F++P A
Sbjct: 105 DAVRGFGGEVVLHGANFDDAKA------KAIE-LSQEKGLTFIHPFDDPLVIAGQG---- 153
Query: 116 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSG 171
T E+ + +DA+ +G GG G +K+ P IK+ G+EPT+S L
Sbjct: 154 TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDA 213
Query: 172 GKPGPHKIQGIGAGFVPGV-----------LEVNIIDEVVQVSSDE 206
G+P G+ F GV L +D++V V +DE
Sbjct: 214 GEPVDLDQVGL---FADGVAVKRVGDETFRLCQQYLDDIVTVDTDE 256
|
This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499 |
| >gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 36/257 (14%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 81
G + ++GNT LA AA + ++ +PA +L + A+GA ++ +G
Sbjct: 69 GVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVL---AVEGN 125
Query: 82 KGAVQKAEEILAKTPNAYMLQQFENPANP-KIH-YETTGPELWKGSGGRI-DALVSGIGT 138
+ LA+ Y+ N NP ++ +T E+ + G + D +V +G
Sbjct: 126 FDDALRLVRELAEENWIYLS----NSLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGN 181
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTE-SPVLSGGKPG---------PHKI- 179
GG IT K KE + P ++ G++ +P++ K G P I
Sbjct: 182 GGNITAIWKGFKELKELGLIDRLP--RMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIA 239
Query: 180 QGIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 234
I G G + + E V VS +E +E KLLA EG+FV +S + A
Sbjct: 240 TAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLK 299
Query: 235 EIAKRPENAGKLIVVIF 251
++ + VV+
Sbjct: 300 KLREEGIIDKGERVVVV 316
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324 |
| >gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-09
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 38/246 (15%)
Query: 27 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL-VLTDPAKGMKGAV 85
I +SGN G G+A A + + P S + +RA GAE+ + A + A
Sbjct: 72 ITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAA 131
Query: 86 QKAEEILAKTPNAYMLQQFENPAN-PKI--HYETTGPELWKGSGGRIDALVSGIGTGGTI 142
++A E K + +P N P++ T G EL + +DA+ +G GG I
Sbjct: 132 RRAAEQQGKV--------YISPYNDPQVIAGQGTIGMELVE-QQPDLDAVFVAVGGGGLI 182
Query: 143 TGAGKFLKEKNPNIKLYG------------------IEPTESPVLSGGKPGPHKIQGIGA 184
+G +LK +P ++ G +E E P LS G G G+
Sbjct: 183 SGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAG-----GVEP 237
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
G + L +ID+ V VS +E E +L+A + + ++G A AAA+++A R + G
Sbjct: 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ--G 295
Query: 245 KLIVVI 250
K + V+
Sbjct: 296 KKVAVV 301
|
Length = 317 |
| >gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 28/209 (13%)
Query: 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71
+ A+G+IT ++GN G+A AA + +I MP + + +RA G E
Sbjct: 82 EQLARGVITA--------SAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGE 133
Query: 72 LVLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRI 129
+VL + + A++ AEE + F++P + T E+ + G +
Sbjct: 134 VVLHGESFPDALAHALKLAEE-----EGLTFVPPFDDP-DVIAGQGTVAMEILRQHPGPL 187
Query: 130 DALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG-KPGPHKIQGIGAGFVP 188
DA+ +G GG I G ++K P IK+ G+EP +S L G + G F
Sbjct: 188 DAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFAD 247
Query: 189 GVLEVNI-----------IDEVVQVSSDE 206
GV I +DEVV VS+DE
Sbjct: 248 GVAVAQIGEHTFELCRHYVDEVVTVSTDE 276
|
Length = 521 |
| >gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 129 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKP----GPHKI- 179
+D +V IG GG I+G +K P +++ G++ +P L+ G+P I
Sbjct: 171 VDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIA 230
Query: 180 QGIGAGFVPGVLEVNII----DEVVQVSSDE---AI----ETAKLLALKEGLFVGISSGG 228
GI PG L II D+VV VS +E AI E AKL+ EG +G
Sbjct: 231 DGIAVK-RPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVV--EG------AGA 281
Query: 229 AAAAAIEIAKRPENAGKLIVVI 250
+ AA+ K K++ V+
Sbjct: 282 VSVAALLSGKLDVKGKKVVAVL 303
|
Length = 404 |
| >gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 29/258 (11%)
Query: 7 YSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 65
+S +S+ E + G+IT ++GN G+A+ A+ I MP ++ +
Sbjct: 64 FSKLSEDELRNGVITA--------SAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAV 115
Query: 66 RAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 125
A+GA ++LT + A + A++I A N ++ F + T G E+ +
Sbjct: 116 EAYGAHVILT--GRDYDEAHRYADKI-AMDENRTFIEAFNDRWVISGQ-GTIGLEIMEDL 171
Query: 126 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHK--- 178
+D ++ +G GG I+G K NPN+K+ GIE S L GK H
Sbjct: 172 PD-LDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGV 230
Query: 179 --IQGIGAGFVPGVLEVNI----IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232
GI + PG L +I +D++V V ++E++ A + V SG A
Sbjct: 231 SICDGISVKY-PGDLTFDIAKNYVDDIVTV-TEESVSKAIYKLFEREKIVAEPSGAVGLA 288
Query: 233 AIEIAKRPENAGKLIVVI 250
AI K K+ +V+
Sbjct: 289 AIMEGKVDVKGKKVAIVV 306
|
Length = 406 |
| >gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 66/269 (24%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 80
G ++ +SGNTG A AA ++ + P +S + + GA ++ G
Sbjct: 125 GAKTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVI---AVDG 181
Query: 81 MKGAVQK-AEEILAKTPNAYMLQQFENPANP------KIHYETTGPELWKGSGGRI-DAL 132
Q+ +E + + N NP K + E+ + G + D +
Sbjct: 182 NFDDAQELVKEAANREGLLSAV----NSINPYRLEGQKTYAF----EIAEQLGWKAPDHV 233
Query: 133 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA-GFVPGVL 191
V +G GG + K KE P K+ ++P + G+ A GF PGV
Sbjct: 234 VVPVGNGGNLLAIYKGFKEGLPIGKI-----DKAP----------NMNGVQAEGFSPGVY 278
Query: 192 EVNIIDEVVQ------------------------------VSSDEAIETAKLLALKEGLF 221
E + VS +E +E KLLA +EG+
Sbjct: 279 AWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGIL 338
Query: 222 VGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+ S A AA +++ ++ + + +V++
Sbjct: 339 IEPHSAVAVAALLKLREKIIDPDETVVLV 367
|
Length = 411 |
| >gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 30 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE---LVLTDPAKGMKGAVQ 86
++GN G A+ + MPA+ ++ ++ FG E ++L
Sbjct: 71 SAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILV--GDTFDQCAA 128
Query: 87 KAEEILAKTPNAYMLQQFENPANPKIHYE-TTGPELWKGSGGRIDALVSGIGTGGTITGA 145
A E + + F++P I + T E+ + D +V +G GG I+G
Sbjct: 129 AAREHVEDH-GGTFIPPFDDPR--IIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGL 185
Query: 146 GKFLKEKNPNIKLYGIEPTESPVLS 170
+L +P K+ G+EP +P +
Sbjct: 186 TTYLAGTSPKTKIIGVEPEGAPSMK 210
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409 |
| >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 38/246 (15%)
Query: 27 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 86
I ++GN G+A A + +I MP + L + +A GAE++L A
Sbjct: 72 IAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILK--GDNYDEAYA 129
Query: 87 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG----------GRIDALVSGI 136
A E AK N + FE+ E+ G G +D +V +
Sbjct: 130 FALEY-AKENNLTFIHPFEDE------------EVMAGQGTIALEMLDEISDLDMVVVPV 176
Query: 137 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL--SGGKPGPHKIQG---IGAGF-VPGV 190
G GG I+G K+ NPNIK+ G+ +P + S + I G V
Sbjct: 177 GGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236
Query: 191 LEVNI------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
+N+ +D+ VQV DE I A L L++ V +G A+ AA+ K G
Sbjct: 237 SPINLAIILECVDDFVQV-DDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKG 295
Query: 245 KLIVVI 250
K I V+
Sbjct: 296 KKIGVV 301
|
Length = 403 |
| >gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 56/230 (24%)
Query: 7 YSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62
Y+ ++ + A+G+IT ++GN G+A AA + +I MP + +
Sbjct: 56 YNKMAQLTEEQLARGVITA--------SAGNHAQGVALSAARLGIKAVIVMPVTTPDIKV 107
Query: 63 IILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE-TT 117
+RAFG E+VL D A A E LA+ + F++P I + T
Sbjct: 108 DAVRAFGGEVVLHGDSFDEAY------AHAIE-LAEEEGLTFIHPFDDPD--VIAGQGTI 158
Query: 118 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPH 177
E+ + +DA+ +G GG I G ++K+ P IK+ G+EP +S L
Sbjct: 159 AMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK------- 211
Query: 178 KIQGIGAG----------FVPGV-----------LEVNIIDEVVQVSSDE 206
+ AG F GV L +D+V+ V +DE
Sbjct: 212 --AALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDE 259
|
Length = 504 |
| >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 32 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAE 89
GN G+ +A+ AAA + +P + + LRA GAE+V+ A ++ A A
Sbjct: 77 GNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAA 136
Query: 90 EILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFL 149
E A +AY Q E A T G E + +D ++ +G GG I G +
Sbjct: 137 ETGALLCHAY--DQPEVLAGAG----TLGLE-IEEQAPGVDTVLVAVGGGGLIAGIAAWF 189
Query: 150 KEKNPNIKLYGIEPTESPVL----SGGKPGPHKIQGIGA--------GFVPGVLEVNIID 197
+ ++ +EP +P L + G+P + GI A G + L +
Sbjct: 190 E---GRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVV 246
Query: 198 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 233
V V SDEAI A+ AL E L + + G A A A
Sbjct: 247 TSVLV-SDEAIIAAR-RALWEELRLAVEPGAATALA 280
|
Length = 310 |
| >gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 130 DALVSGIGTGGTITG-AGKFLKEKNPNIKLYGIEPTESPV--------LSGGKPG----- 175
D +++ +G G G F+ +K+ +KL G+E + L GG G
Sbjct: 204 DVVIACVGGGSNAAGLFYPFINDKD--VKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGL 261
Query: 176 --------PHKIQG---IGAGFV-PGV-------LEVNIIDEVVQVSSDEAIETAKLLAL 216
+I I AG PGV + + E V V+ +EA+E KLLA
Sbjct: 262 KMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRV-EYVAVTDEEALEAFKLLAR 320
Query: 217 KEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 249
EG+ + S A A AI++AK+ K+IVV
Sbjct: 321 TEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV 352
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365 |
| >gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 21 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73
P +I T GN G +AF A I +P S+E+ +RA GAEL+
Sbjct: 68 PRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120
|
Length = 322 |
| >gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 32 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA---ELVLT----DPAKGMKGA 84
GN G+A+ +I MP + ++ +R FG E+VL D + A
Sbjct: 82 GNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDS--AAAA 139
Query: 85 VQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWK--GSGGRIDALVSGI 136
+ AEE A + F++P T E+ + G D + +
Sbjct: 140 QEYAEET-----GATFIPPFDDPDVIAGQG-------TVAVEILEQLEKEGSPDYVFVPV 187
Query: 137 GTGGTITGAGKFLKEKNPNIKLYGIEPTESP----VLSGGKP 174
G GG I+G +LKE++P K+ G+EP + L GKP
Sbjct: 188 GGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKP 229
|
Length = 420 |
| >gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 2 LQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSL 59
+ ++ + ++ E + + G+ T GN G G+A AA+Q + +I MP S
Sbjct: 97 ISELSFEELTSGEVREKL--GDITFATATDGNHGRGVA--WAAQQLGQKAVIYMPKGSSE 152
Query: 60 ERRIILRAFGAELVLTD 76
ER +RA GAE ++TD
Sbjct: 153 ERVDAIRALGAECIITD 169
|
Length = 399 |
| >gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)
Query: 30 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE 89
+SGN +A A I MP + R +G E+V D + E
Sbjct: 79 SSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYT------EDRE 132
Query: 90 EI---LAKTPNAYMLQQFENPANPKIHY----ETTGPELWKGSGGRIDALVSGIGTGGTI 142
EI LA+ ++ +++P H T EL++ G +DAL +G GG +
Sbjct: 133 EIGRRLAEERGLTLIPPYDHP-----HVIAGQGTAAKELFEEVG-PLDALFVCLGGGGLL 186
Query: 143 TGAGKFLKEKNPNIKLYGIEPT-----------------ESP-VLSGGKPGPHKIQGIGA 184
+G + +P K+YG+EP ++P ++ G H +G
Sbjct: 187 SGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQH----LGN 242
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
P + ++D++V VS E ++ + A + + V + AAAA+ + G
Sbjct: 243 YTFPIIRR--LVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALR--GKVPLKG 298
Query: 245 KLIVVI 250
K + VI
Sbjct: 299 KRVGVI 304
|
Length = 321 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 278 | |||
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 100.0 | |
| PLN02565 | 322 | cysteine synthase | 100.0 | |
| PLN02556 | 368 | cysteine synthase/L-3-cyanoalanine synthase | 100.0 | |
| PLN00011 | 323 | cysteine synthase | 100.0 | |
| PLN03013 | 429 | cysteine synthase | 100.0 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 100.0 | |
| TIGR01136 | 299 | cysKM cysteine synthases. This model discriminates | 100.0 | |
| TIGR01139 | 298 | cysK cysteine synthase A. This model distinguishes | 100.0 | |
| PRK10717 | 330 | cysteine synthase A; Provisional | 100.0 | |
| PRK11761 | 296 | cysM cysteine synthase B; Provisional | 100.0 | |
| PLN02356 | 423 | phosphateglycerate kinase | 100.0 | |
| TIGR01138 | 290 | cysM cysteine synthase B. Alternate name: O-acetyl | 100.0 | |
| cd01561 | 291 | CBS_like CBS_like: This subgroup includes Cystathi | 100.0 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 100.0 | |
| COG1171 | 347 | IlvA Threonine dehydratase [Amino acid transport a | 100.0 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 100.0 | |
| PLN02550 | 591 | threonine dehydratase | 100.0 | |
| cd06448 | 316 | L-Ser-dehyd Serine dehydratase is a pyridoxal phos | 100.0 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 100.0 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 100.0 | |
| PRK08813 | 349 | threonine dehydratase; Provisional | 100.0 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 100.0 | |
| PLN02970 | 328 | serine racemase | 100.0 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 100.0 | |
| PRK06352 | 351 | threonine synthase; Validated | 100.0 | |
| PRK08638 | 333 | threonine dehydratase; Validated | 100.0 | |
| PRK08329 | 347 | threonine synthase; Validated | 100.0 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 100.0 | |
| PRK08197 | 394 | threonine synthase; Validated | 100.0 | |
| PRK02991 | 441 | D-serine dehydratase; Provisional | 100.0 | |
| PRK06608 | 338 | threonine dehydratase; Provisional | 100.0 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 100.0 | |
| PRK07048 | 321 | serine/threonine dehydratase; Validated | 100.0 | |
| PRK07476 | 322 | eutB threonine dehydratase; Provisional | 100.0 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 100.0 | |
| PRK06721 | 352 | threonine synthase; Reviewed | 100.0 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK07591 | 421 | threonine synthase; Validated | 100.0 | |
| TIGR02991 | 317 | ectoine_eutB ectoine utilization protein EutB. Mem | 100.0 | |
| PRK06110 | 322 | hypothetical protein; Provisional | 100.0 | |
| PRK07409 | 353 | threonine synthase; Validated | 100.0 | |
| PRK06815 | 317 | hypothetical protein; Provisional | 100.0 | |
| TIGR02035 | 431 | D_Ser_am_lyase D-serine ammonia-lyase. This family | 100.0 | |
| KOG1250 | 457 | consensus Threonine/serine dehydratases [Amino aci | 100.0 | |
| cd06447 | 404 | D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph | 100.0 | |
| cd01563 | 324 | Thr-synth_1 Threonine synthase is a pyridoxal phos | 100.0 | |
| PRK08246 | 310 | threonine dehydratase; Provisional | 100.0 | |
| PRK06381 | 319 | threonine synthase; Validated | 100.0 | |
| cd01562 | 304 | Thr-dehyd Threonine dehydratase: The first step in | 100.0 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 100.0 | |
| PRK06260 | 397 | threonine synthase; Validated | 100.0 | |
| PLN02569 | 484 | threonine synthase | 100.0 | |
| PRK06450 | 338 | threonine synthase; Validated | 100.0 | |
| KOG1481 | 391 | consensus Cysteine synthase [Amino acid transport | 100.0 | |
| PRK08206 | 399 | diaminopropionate ammonia-lyase; Provisional | 100.0 | |
| cd00640 | 244 | Trp-synth-beta_II Tryptophan synthase beta superfa | 100.0 | |
| PRK05638 | 442 | threonine synthase; Validated | 100.0 | |
| TIGR01747 | 376 | diampropi_NH3ly diaminopropionate ammonia-lyase fa | 100.0 | |
| TIGR00260 | 328 | thrC threonine synthase. Involved in threonine bio | 100.0 | |
| cd06446 | 365 | Trp-synth_B Tryptophan synthase-beta: Trptophan sy | 100.0 | |
| TIGR03844 | 398 | cysteate_syn cysteate synthase. Members of this fa | 100.0 | |
| TIGR03528 | 396 | 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem | 100.0 | |
| cd06449 | 307 | ACCD Aminocyclopropane-1-carboxylate deaminase (AC | 100.0 | |
| PRK13028 | 402 | tryptophan synthase subunit beta; Provisional | 100.0 | |
| TIGR01415 | 419 | trpB_rel pyridoxal-phosphate dependent TrpB-like e | 100.0 | |
| PRK12391 | 427 | tryptophan synthase subunit beta; Reviewed | 100.0 | |
| TIGR01275 | 311 | ACC_deam_rel pyridoxal phosphate-dependent enzymes | 100.0 | |
| TIGR00263 | 385 | trpB tryptophan synthase, beta subunit. Tryptophan | 100.0 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 100.0 | |
| PRK03910 | 331 | D-cysteine desulfhydrase; Validated | 100.0 | |
| PRK12390 | 337 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 100.0 | |
| TIGR01274 | 337 | ACC_deam 1-aminocyclopropane-1-carboxylate deamina | 100.0 | |
| PLN02618 | 410 | tryptophan synthase, beta chain | 100.0 | |
| PF00291 | 306 | PALP: Pyridoxal-phosphate dependent enzyme; InterP | 100.0 | |
| PRK14045 | 329 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 100.0 | |
| COG0498 | 411 | ThrC Threonine synthase [Amino acid transport and | 100.0 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 99.98 | |
| PRK09225 | 462 | threonine synthase; Validated | 99.97 | |
| cd01560 | 460 | Thr-synth_2 Threonine synthase catalyzes the final | 99.96 | |
| COG0133 | 396 | TrpB Tryptophan synthase beta chain [Amino acid tr | 99.96 | |
| COG1350 | 432 | Predicted alternative tryptophan synthase beta-sub | 99.95 | |
| COG3048 | 443 | DsdA D-serine dehydratase [Amino acid transport an | 99.92 | |
| KOG1395 | 477 | consensus Tryptophan synthase beta chain [Amino ac | 99.9 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 93.2 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.86 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 90.76 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.99 | |
| KOG2616 | 266 | consensus Pyridoxalphosphate-dependent enzyme/pred | 89.84 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.67 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 89.37 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 88.78 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.02 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 87.13 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 86.46 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 86.34 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 86.06 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 85.56 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 85.54 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 85.46 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 85.4 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 85.26 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 84.99 | |
| TIGR00696 | 177 | wecB_tagA_cpsF bacterial polymer biosynthesis prot | 84.45 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 84.14 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 83.97 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 83.85 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 83.74 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 83.11 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 83.05 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 82.61 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 82.46 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 82.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 81.97 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 81.9 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 81.33 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 80.66 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 80.55 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 80.48 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 80.44 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 80.25 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 80.17 |
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-63 Score=421.00 Aligned_cols=257 Identities=60% Similarity=0.991 Sum_probs=244.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
+|||.|.+++.+|+++|.|+||. +||++||||+|+++|++|+.+|+++++|||++++.+|+++|++|||+|+.++...+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g 119 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCC
Confidence 59999999999999999999995 79999999999999999999999999999999999999999999999999998444
Q ss_pred -hHHHHHHHHHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEE
Q 023695 81 -MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 158 (278)
Q Consensus 81 -~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~v 158 (278)
+..+.+++++++++.|+ .+|.+||+||.|+.+||.+++.||++|+++.+|+||+++|||||++|++++||+.+|++++
T Consensus 120 ~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~i 199 (300)
T COG0031 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRI 199 (300)
T ss_pred chHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEE
Confidence 78899999999999888 7778899999999999999999999999888999999999999999999999999999999
Q ss_pred EEEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHh
Q 023695 159 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 238 (278)
Q Consensus 159 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~ 238 (278)
++|||++|+.+..+. .++.++||+.+++|..++.+.+|+++.|+|+++++++|+|+++||+++++|||+++++++++++
T Consensus 200 v~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~ 278 (300)
T COG0031 200 VAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAK 278 (300)
T ss_pred EEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHH
Confidence 999999998887655 8899999999999988999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCeEEEEecCCCcCCcc
Q 023695 239 RPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 239 ~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+.. ++++||+|+||+|+||+|
T Consensus 279 ~~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 279 ELP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred hcC-CCCeEEEEECCCcccccC
Confidence 874 589999999999999998
|
|
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=429.84 Aligned_cols=278 Identities=87% Similarity=1.320 Sum_probs=258.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||+|.++|..+.++|.+.||.+.||++|+||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.+++..+
T Consensus 45 fKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~ 124 (322)
T PLN02565 45 VKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKG 124 (322)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCC
Confidence 89999999999999999999987789999999999999999999999999999999999999999999999999987545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.+++++++||+||.|+..||+|+|+||++|+++.||+||+|+|+||+++|++++||+.+|++|||+
T Consensus 125 ~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~ 204 (322)
T PLN02565 125 MKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYG 204 (322)
T ss_pred cHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 67888999999887667899999999998888999999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++++..+++.++.+++++.+..|..+..+.+|+.+.|+|+|++++++.|++++|+++||+||+++++++++++..
T Consensus 205 Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~ 284 (322)
T PLN02565 205 VEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRP 284 (322)
T ss_pred EecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhc
Confidence 99999998887777778889998877777777788999999999999999999999999999999999999999999876
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcccccC
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
..++++||+|++|+|.||+++.+|+.+.....+|+||.
T Consensus 285 ~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~~ 322 (322)
T PLN02565 285 ENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFEP 322 (322)
T ss_pred CCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccCC
Confidence 55678999999999999999999999999999999983
|
|
| >PLN02556 cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=425.93 Aligned_cols=277 Identities=61% Similarity=1.041 Sum_probs=255.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+++++|.++||.++||++|+||||+|+|++|+++|++|+||||+.++..|+.+|+.|||+|+.+++..+
T Consensus 89 ~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~ 168 (368)
T PLN02556 89 IKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKG 168 (368)
T ss_pred hHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCC
Confidence 79999999999999999999998889999999999999999999999999999999999999999999999999986444
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
+...++.+++++++.++++|++||+||.++..||.++++||++|+.+.||+||+|+|||||++|+++++|+.+|++|||+
T Consensus 169 ~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVig 248 (368)
T PLN02556 169 MGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYG 248 (368)
T ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEE
Confidence 55778888888888778899999999999667999999999999866899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++..+.+++++.+..|..++.+++|+++.|+|+|++++++.|++++|+++||+||++++++++++++.
T Consensus 249 Vep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~ 328 (368)
T PLN02556 249 VEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMP 328 (368)
T ss_pred EeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhc
Confidence 99999988877777777778888776677777889999999999999999999999999999999999999999988776
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..++++||+|++|+|.||+|+.+|++|+++.++|++|
T Consensus 329 ~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 329 ENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred cCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 4568899999999999999999999999999999887
|
|
| >PLN00011 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=410.36 Aligned_cols=277 Identities=69% Similarity=1.084 Sum_probs=251.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.+.||.++||++|+||||+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++....
T Consensus 47 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~ 126 (323)
T PLN00011 47 VKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIG 126 (323)
T ss_pred cchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcC
Confidence 89999999999999999999987789999999999999999999999999999999999999999999999999996444
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.++.++.+++++++.+++++++||+|+.++..||.++++||++|+.++||+||+|+|+|||++|++++||+.+|+++||+
T Consensus 127 ~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvig 206 (323)
T PLN00011 127 LKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCV 206 (323)
T ss_pred hHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEE
Confidence 45667778888887667889999999988777999999999999966899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++..+.++|++.+..|..+....+|+.+.|+|+|+++++++|++++|+++||+||++++++++++++.
T Consensus 207 Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~ 286 (323)
T PLN00011 207 VEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRP 286 (323)
T ss_pred EecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhc
Confidence 99999988877777777788888776677667788999999999999999999999999999999999999999988765
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..+++++|+|++|+|+||+|+.+|+.|+....+++.|
T Consensus 287 ~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 287 ENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred cCCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 4567899999999999999999999988876777654
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=415.93 Aligned_cols=262 Identities=72% Similarity=1.161 Sum_probs=242.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||+|.++|.+++++|.++||+++||++|+||||+|+|++|+.+|++++||||+++++.|+++|+.|||+|+.+++..+
T Consensus 153 fKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~ 232 (429)
T PLN03013 153 VKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232 (429)
T ss_pred cHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCC
Confidence 89999999999999999999997789999999999999999999999999999999999999999999999999987555
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
+.++.+.+++++++.++++|++||+||.|+.+||.|+|+||++|++++||+||+|+||||+++|++++||+.+|+++||+
T Consensus 233 ~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVig 312 (429)
T PLN03013 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIG 312 (429)
T ss_pred hHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEE
Confidence 67888999999888667899999999999777999999999999977899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+.++++.++.++|++.+.+|..+++.++|+++.|+|+|+++++++|++++|+++||+||++++++++++++.
T Consensus 313 Vep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~ 392 (429)
T PLN03013 313 VEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRP 392 (429)
T ss_pred EEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhc
Confidence 99999988877778888889999888888888889999999999999999999999999999999999999999998765
Q ss_pred CCCCCeE-EEEecCCCcCCcchh
Q 023695 241 ENAGKLI-VVIFPSFGERYLSSV 262 (278)
Q Consensus 241 ~~~~~~v-v~i~~~gG~~~~~~~ 262 (278)
..+++++ |+|++|+|++|.++.
T Consensus 393 ~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 393 ENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred cCCCCEEEEEEcCCCchhchhhh
Confidence 5556665 667778999999984
|
|
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-59 Score=396.31 Aligned_cols=274 Identities=68% Similarity=1.109 Sum_probs=258.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
.|||.++.||.+|+.+|.++||.++|+++||||+|+++|++|+..|++|+++||++.+.+|+..|+++|++|+.++....
T Consensus 82 vKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~ 161 (362)
T KOG1252|consen 82 VKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAG 161 (362)
T ss_pred HHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred hHH---HHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+.. +...+.++..+.|+.+.++||.||.|+..||.++++||++|+.+++|.+|.++|||||++|+.+++|+.+|+++
T Consensus 162 ~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~k 241 (362)
T KOG1252|consen 162 MKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIK 241 (362)
T ss_pred cCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCE
Confidence 555 88889999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEEecCCCCcccCCCCCC--ccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHH
Q 023695 158 LYGIEPTESPVLSGGKPGP--HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 235 (278)
Q Consensus 158 vigV~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~ 235 (278)
|++|+|..|..+....+++ +.++|||.++.|..++...+|+.+.+.++|++.+.++|+.+||+++++|||++++++++
T Consensus 242 Vv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~ 321 (362)
T KOG1252|consen 242 VVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALK 321 (362)
T ss_pred EEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHH
Confidence 9999999998887777777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcc
Q 023695 236 IAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 274 (278)
Q Consensus 236 ~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 274 (278)
++++.+..++-+|++++|+|.+|+++.+||+|+++..++
T Consensus 322 ~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 322 LAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 999987666666666589999999999999999987765
|
|
| >TIGR01136 cysKM cysteine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=393.64 Aligned_cols=263 Identities=64% Similarity=1.058 Sum_probs=239.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+++..++++|.+.+| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++++.+
T Consensus 37 ~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~ 115 (299)
T TIGR01136 37 VKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEG 115 (299)
T ss_pred ccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 8999999999999999998877 469999999999999999999999999999999999999999999999999997545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.+++++++||+|+.++..||+++++||++|+++.||+||+|+|+||+++|++.+||+.+|.+|||+
T Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ 195 (299)
T TIGR01136 116 MKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVA 195 (299)
T ss_pred hHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEE
Confidence 78889999999887646789999999998788999999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++++...++..+.+.+++.+..++.+.++++|+.+.|+|+|++++++.|++.+|+++||+||++++++++++++.
T Consensus 196 Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~ 275 (299)
T TIGR01136 196 VEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRL 275 (299)
T ss_pred EecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhc
Confidence 99999988876666666677787776777777888999999999999999999999999999999999999999988775
Q ss_pred CCCCCeEEEEecCCCcCCcchhhc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
..++++||+|+||+|.||+++..|
T Consensus 276 ~~~~~~vv~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 276 ENADKVIVAILPDTGERYLSTGLF 299 (299)
T ss_pred CCCCCEEEEEECCCCccccCcccC
Confidence 456889999999999999997544
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. |
| >TIGR01139 cysK cysteine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=391.22 Aligned_cols=261 Identities=66% Similarity=1.068 Sum_probs=236.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|++.+| ++|+++|+||||+|+|++|+++|++|+||||+++++.|++.|+.+||+|+.+++..+
T Consensus 36 ~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~ 114 (298)
T TIGR01139 36 VKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEG 114 (298)
T ss_pred chHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCC
Confidence 8999999999999999998877 469999999999999999999999999999999999999999999999999997544
Q ss_pred hHHHHHHHHHHHHhCCC-ccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 81 MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
+.++.+.+++++++.++ +++++||+||.++..||.++++||++|+++.||+||+|+|+||+++|++.+|++.++++|||
T Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi 194 (298)
T TIGR01139 115 MKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIV 194 (298)
T ss_pred HHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEE
Confidence 46778888888887644 55899999999878899999999999996579999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|||.+++.+...++..+.+++++.+..+..++...+|+++.|+|+|+++++++|++++|+++||+||++++++++++++
T Consensus 195 ~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~ 274 (298)
T TIGR01139 195 AVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKR 274 (298)
T ss_pred EEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHh
Confidence 99999998887666666777888877677777788899999999999999999999999999999999999999998876
Q ss_pred CCCCCCeEEEEecCCCcCCcchhh
Q 023695 240 PENAGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 240 ~~~~~~~vv~i~~~gG~~~~~~~~ 263 (278)
.. ++++||+|+||+|.||+|+..
T Consensus 275 ~~-~~~~vv~v~~d~G~ky~~~~~ 297 (298)
T TIGR01139 275 PE-PDKLIVVILPSTGERYLSTPL 297 (298)
T ss_pred cC-CCCEEEEEECCCCccccCccc
Confidence 43 678999999999999999744
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. |
| >PRK10717 cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=391.71 Aligned_cols=270 Identities=43% Similarity=0.702 Sum_probs=234.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK- 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~- 79 (278)
||+|++.+++.+++++|+++|| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++..
T Consensus 43 ~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 121 (330)
T PRK10717 43 VKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPY 121 (330)
T ss_pred chHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCccc
Confidence 8999999999999999998887 46999999999999999999999999999999999999999999999999998631
Q ss_pred -----ChHHHHHHHHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC
Q 023695 80 -----GMKGAVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 153 (278)
Q Consensus 80 -----~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 153 (278)
..+.+.+.++++.++.+ +++|++||+||.++..||.++++||++|++..||+||+|+|+||+++|++++||+.+
T Consensus 122 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~ 201 (330)
T PRK10717 122 ANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETN 201 (330)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhC
Confidence 12233444555544432 688999999999867899999999999997679999999999999999999999999
Q ss_pred CCcEEEEEecCCCCccc---CCC---CCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 154 PNIKLYGIEPTESPVLS---GGK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~---~~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|+++||+|||++++.+. .++ ...+.+++++.+..+..+....+|+++.|+|+|++++++.|++++|+++||+||
T Consensus 202 ~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssg 281 (330)
T PRK10717 202 PKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSG 281 (330)
T ss_pred CCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHH
Confidence 99999999999985432 122 234567888877666666667789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
++++++++++++. .++++||+|+|++|+||+++++.|+|.....
T Consensus 282 a~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~ 325 (330)
T PRK10717 282 INVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDFLREKG 325 (330)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHHHHhcC
Confidence 9999999987764 4678999999999999999988889888654
|
|
| >PRK11761 cysM cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=384.58 Aligned_cols=254 Identities=46% Similarity=0.777 Sum_probs=225.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.++|| ++||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++...+
T Consensus 42 ~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 120 (296)
T PRK11761 42 VKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQG 120 (296)
T ss_pred chhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 8999999999999999998887 469999999999999999999999999999999999999999999999999997556
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.++..||.|+++||++|+++.+|+||+|+|+||+++|++++||+.+|++|||+
T Consensus 121 ~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvig 199 (296)
T PRK11761 121 MEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVG 199 (296)
T ss_pred hHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888899888875 7889999999998788999999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+.+ +.++.....+..++...+|+++.|+|+|++++++.|++.+|+++||+||++++++++++++
T Consensus 200 Vep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~- 271 (296)
T PRK11761 200 LQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE- 271 (296)
T ss_pred EecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH-
Confidence 99998876632 1111122233445567889999999999999999999999999999999999999998776
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcH
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
.++++||+|+||+|.||+++..|+
T Consensus 272 -~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 272 -NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred -CCCCeEEEEECCCCcccCChhccc
Confidence 357899999999999999985554
|
|
| >PLN02356 phosphateglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=392.95 Aligned_cols=270 Identities=33% Similarity=0.518 Sum_probs=231.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC--
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-- 78 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-- 78 (278)
||||++.++|.+|+++|.++|++ +|+++||||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++.
T Consensus 83 ~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~ 161 (423)
T PLN02356 83 VKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSI 161 (423)
T ss_pred HHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccC
Confidence 79999999999999999988875 588899999999999999999999999999999999999999999999999641
Q ss_pred ---CCh-HHHH---HHHHHHHHh--------------------------------CCCccccCCCCCCCchhhhhhchHH
Q 023695 79 ---KGM-KGAV---QKAEEILAK--------------------------------TPNAYMLQQFENPANPKIHYETTGP 119 (278)
Q Consensus 79 ---~~~-~~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~g~~t~~~ 119 (278)
.++ ..+. ..+.+++++ .++.+|++||+|+.|+..|+..+|+
T Consensus 162 ~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~ 241 (423)
T PLN02356 162 THKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGP 241 (423)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHH
Confidence 122 1111 223444433 1467899999999997777766799
Q ss_pred HHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCCccc-------------CCCC----CCcccccc
Q 023695 120 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------------GGKP----GPHKIQGI 182 (278)
Q Consensus 120 EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~-------------~~~~----~~~~~~gl 182 (278)
||++|++++||+||+|+|||||++|++++||+.+|+++|++|||.+++.+. .++. .++.++|+
T Consensus 242 EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gi 321 (423)
T PLN02356 242 EIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGI 321 (423)
T ss_pred HHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcC
Confidence 999999768999999999999999999999999999999999999886332 1221 25678899
Q ss_pred CCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 183 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
+.+..|..++...+|+++.|+|+|+++++++|++++|+++||+||++++++++++++. .++++||+|+|++|.||++++
T Consensus 322 g~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~ 400 (423)
T PLN02356 322 GINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKF 400 (423)
T ss_pred cCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhh
Confidence 9887788888889999999999999999999999999999999999999999988653 368899999999999999998
Q ss_pred hcHHHHHHhh
Q 023695 263 LFESVRKEAE 272 (278)
Q Consensus 263 ~~~~~~~~~~ 272 (278)
+.++|+.+++
T Consensus 401 ~~~~w~~~~~ 410 (423)
T PLN02356 401 HDPQYLSQHG 410 (423)
T ss_pred cCHHHHHhcC
Confidence 8888887654
|
|
| >TIGR01138 cysM cysteine synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=378.24 Aligned_cols=252 Identities=44% Similarity=0.792 Sum_probs=224.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|++.|+ ++|+++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.+++..+
T Consensus 38 ~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~ 116 (290)
T TIGR01138 38 VKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEG 116 (290)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 7999999999999999998887 469999999999999999999999999999999999999999999999999987545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +.+|++||+|+.++..||.++++||++|++++||+||+|+||||+++|++.+||+.+|++|||+
T Consensus 117 ~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~ 195 (290)
T TIGR01138 117 MEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVG 195 (290)
T ss_pred hHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 788888999998886 4568999999999777899999999999976799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||.+++.+.+ +.+++.+..+..++...+|+++.|+|+|+++++++|++++|+++||+||++++++++++++.
T Consensus 196 Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~ 268 (290)
T TIGR01138 196 LQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL 268 (290)
T ss_pred EeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC
Confidence 99999876532 12233333344455677899999999999999999999999999999999999999987763
Q ss_pred CCCCCeEEEEecCCCcCCcchhh
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~ 263 (278)
+++++|+|+||+|.||+|+.+
T Consensus 269 --~~~~vv~v~~d~g~ky~~~~~ 289 (290)
T TIGR01138 269 --PDAVVVAIICDRGDRYLSTGV 289 (290)
T ss_pred --CCCeEEEEECCCCccccCccc
Confidence 578999999999999999744
|
Alternate name: O-acetylserine (thiol)-lyase |
| >cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=377.18 Aligned_cols=258 Identities=60% Similarity=0.998 Sum_probs=232.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK- 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~- 79 (278)
||+|++.++|.++.++|+++++ ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++...
T Consensus 32 ~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~ 110 (291)
T cd01561 32 VKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEA 110 (291)
T ss_pred chHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCc
Confidence 8999999999999999987776 46999999999999999999999999999999999999999999999999999742
Q ss_pred -ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEE
Q 023695 80 -GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 158 (278)
Q Consensus 80 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~v 158 (278)
+.+++.+.+++++++.++++|++||+||.++..|++|+++||.+|++..||+||+|+|+||+++|++.+|++.+|.++|
T Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~v 190 (291)
T cd01561 111 DGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRI 190 (291)
T ss_pred CCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEE
Confidence 3478888899888876679999999999985444459999999999667999999999999999999999999999999
Q ss_pred EEEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHh
Q 023695 159 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 238 (278)
Q Consensus 159 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~ 238 (278)
|+|||++++++.......+.+++++.+..+..+...++|+++.|+|+|++++++.|++++|+++||++|+++++++++++
T Consensus 191 i~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~ 270 (291)
T cd01561 191 VGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAK 270 (291)
T ss_pred EEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHH
Confidence 99999999887544455667788888766777777889999999999999999999999999999999999999999887
Q ss_pred cCCCCCCeEEEEecCCCcCCcc
Q 023695 239 RPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 239 ~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+.. ++++||+|+|++|.||+|
T Consensus 271 ~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 271 RLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred hcC-CCCeEEEEECCCccccCC
Confidence 753 678999999999999986
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=398.49 Aligned_cols=270 Identities=40% Similarity=0.688 Sum_probs=236.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|+|.+++.+++++|++.+| ++|+++|+||||+|+|++|+++|++|++|||+++++.|+..++.|||+|+.+++...
T Consensus 41 ~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 119 (454)
T TIGR01137 41 VKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119 (454)
T ss_pred hHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccC
Confidence 7999999999999999999888 579999999999999999999999999999999999999999999999999986322
Q ss_pred hH---HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
++ ...+.+++++++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.+||+.+|.++
T Consensus 120 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~ 199 (454)
T TIGR01137 120 FDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCR 199 (454)
T ss_pred CCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCE
Confidence 32 235667778777556788999999998778999999999999976799999999999999999999999999999
Q ss_pred EEEEecCCCCcccCCC------CCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHH
Q 023695 158 LYGIEPTESPVLSGGK------PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 231 (278)
Q Consensus 158 vigV~~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~a 231 (278)
||+|||++++.. .+. ...+.++|++.+..|..++.+++|+.+.|+|+|++++++.|++++|+++||+||++++
T Consensus 200 vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~a 278 (454)
T TIGR01137 200 IVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVV 278 (454)
T ss_pred EEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHH
Confidence 999999998633 221 1234567887665677777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 232 AAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 232 a~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
++++++++...+++++|+++||+|.||+++.++++|....+
T Consensus 279 a~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~ 319 (454)
T TIGR01137 279 AALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNG 319 (454)
T ss_pred HHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcC
Confidence 99998874224578999999999999999999999887654
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=368.45 Aligned_cols=259 Identities=24% Similarity=0.312 Sum_probs=227.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||.|+|++.+..+.+++..+ ..||++|+||||+++|++|+++|+|++||||.+++..|++.++.||++|++++. +
T Consensus 55 FK~RGA~n~i~~Ls~e~~~~---~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~ 129 (347)
T COG1171 55 FKIRGAYNKLSSLSEEEERA---AGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--N 129 (347)
T ss_pred chhhhHHHHHHhcChhhhhc---CceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--C
Confidence 89999999999976443222 469999999999999999999999999999999999999999999999999996 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
|+++.+.+++++++. ++.|++||++|+. ++||+|++.||++|++..||+||||+|+||+++|++.++|...|.++|||
T Consensus 130 ~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIG 207 (347)
T COG1171 130 FDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIG 207 (347)
T ss_pred HHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEE
Confidence 899999999999997 8999999999998 89999999999999965579999999999999999999999999999999
Q ss_pred EecCCCCccc----CCC-C-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 161 IEPTESPVLS----GGK-P-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 161 V~~~~~~~~~----~~~-~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|||+++++++ .|+ + ..+.++|++... .++.+.++++|+++.|+|+|+.++|+++++.+++++||+++
T Consensus 208 VEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGA 287 (347)
T COG1171 208 VEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGA 287 (347)
T ss_pred EeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHH
Confidence 9999999764 342 2 234567777543 47778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++++++....+. .+++++++|+ +|||-++ ..|.+.++.
T Consensus 288 lalAal~~~~~~~-~~g~~v~~il-SGgN~d~--~~~~~v~~~ 326 (347)
T COG1171 288 LALAALLAGKIEP-LQGKTVVVIL-SGGNIDF--ERLAEVLER 326 (347)
T ss_pred HHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCH--HHHHHHHhc
Confidence 9999999876664 5677788888 9999444 456655554
|
|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=378.83 Aligned_cols=259 Identities=24% Similarity=0.305 Sum_probs=224.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|+|.+.+..+.++.. + +.||++|+||||+++|++|+++|++|+||||++++..|+..++.|||+|+.+++ +
T Consensus 67 fK~RGA~n~i~~l~~~~~-~---~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~ 140 (521)
T PRK12483 67 FKIRGAYNKMARLPAEQL-A---RGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--S 140 (521)
T ss_pred hHHHHHHHHHHHhHHHHh-c---CcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999998764432 1 459999999999999999999999999999999999999999999999999985 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+++.||+||+|+|+||+++|++.++|..+|++||||
T Consensus 141 ~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIG 218 (521)
T PRK12483 141 FPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIG 218 (521)
T ss_pred HHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998886 7899999999998 88999999999999965699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+
T Consensus 219 Vep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAa 298 (521)
T PRK12483 219 VEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGAL 298 (521)
T ss_pred EEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHH
Confidence 9999998764 23331 23456666432 234455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++|+++++.++...++++||+|+ |||+ +|...+..+.++
T Consensus 299 alAal~~~~~~~~~~g~~VV~Il-sGgN--id~~~l~~i~~r 337 (521)
T PRK12483 299 AVAGIKKYAEREGIEGQTLVAID-SGAN--VNFDRLRHVAER 337 (521)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEe-CCCC--CCHHHHHHHHHH
Confidence 99999998776655788899898 8898 454466666554
|
|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=376.57 Aligned_cols=258 Identities=21% Similarity=0.255 Sum_probs=222.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+.|..+.++. .. +.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +
T Consensus 139 FK~RGA~n~I~~L~~e~-~~---~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~ 212 (591)
T PLN02550 139 FKLRGAYNMMAKLPKEQ-LD---KGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--S 212 (591)
T ss_pred HHHHHHHHHHHHHHHhc-CC---CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--C
Confidence 89999999999885442 23 459999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+++.+|+||+|+|+||+++|++.++|..+|++||||
T Consensus 213 ~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIG 290 (591)
T PLN02550 213 YDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIG 290 (591)
T ss_pred HHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7889999999998 78999999999999965699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+..+|+.... .++.+.++++|+++.|+|+|+.++++++++++|+++||++|+
T Consensus 291 VEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~ 370 (591)
T PLN02550 291 VEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGAL 370 (591)
T ss_pred EEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHH
Confidence 9999998764 34432 23456665432 233455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++||++++.++...++++||+|+ ||||- |...+....+
T Consensus 371 alAall~~~~~~~~~g~~Vv~vl-sGgNi--d~~~l~~v~~ 408 (591)
T PLN02550 371 ALAGAEAYCKYYGLKDENVVAIT-SGANM--NFDRLRIVTE 408 (591)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEe-cCCCC--CHHHHHHHHH
Confidence 99999998776556788999998 88884 4445555543
|
|
| >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=356.16 Aligned_cols=263 Identities=19% Similarity=0.204 Sum_probs=218.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. .++ ++||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.+++. .
T Consensus 31 ~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~ 107 (316)
T cd06448 31 FKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV-W 107 (316)
T ss_pred hHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc-h
Confidence 799999999999999985 333 6799999999999999999999999999999999999999999999999999863 2
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--CCCEEEEecCCCccHHHHHHHHHhhC-CCcE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKN-PNIK 157 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~ 157 (278)
++++.+.+++++++.++++|++||+||.+ ..||.++++||++|+++ .||+||+|+|+||+++|++++||+.+ ++++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ 186 (316)
T cd06448 108 WEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIP 186 (316)
T ss_pred HHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCE
Confidence 67777778888777557899999999988 78999999999999965 59999999999999999999999996 9999
Q ss_pred EEEEecCCCCccc----CCCC-----CCccccccCCCCCcc---cccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 158 LYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
||+|||++++++. .+++ ..+.++|++.+..+. ...++..|+.+.|+|+|+++++++|++++||++||+
T Consensus 187 ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~s 266 (316)
T cd06448 187 VVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPA 266 (316)
T ss_pred EEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechh
Confidence 9999999997663 2332 134556787665443 223466899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----hcCC-CCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 226 SGGAAAAAIEIA-----KRPE-NAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 226 sg~a~aa~~~~~-----~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
||++++++++.. +++. .++++||+|+ |||+. +|..-|.++++
T Consensus 267 saa~laa~~~~~~~~~~~~~~~~~~~~Vv~il-tg~n~-~~~~~~~~~~~ 314 (316)
T cd06448 267 CGAALAVVYSGKILDLQLEVLLTPLDNVVVVV-CGGSN-ITLEQLKEYKK 314 (316)
T ss_pred HHHHHHHHHhCcchhhhcccccCCCCeEEEEE-CCCCC-CCHHHHHHHHH
Confidence 999999998532 2122 4688999999 66663 14335555543
|
|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=372.79 Aligned_cols=259 Identities=23% Similarity=0.304 Sum_probs=222.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|+|.+++..+.++.. .+.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +
T Consensus 47 fK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~ 120 (499)
T TIGR01124 47 FKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--N 120 (499)
T ss_pred CHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--C
Confidence 899999999998744322 1569999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|.||++|++++||+||+|+|+|||++|++.++|..+|++||||
T Consensus 121 ~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIg 198 (499)
T TIGR01124 121 FDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIG 198 (499)
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999988 79999999999999965799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++ ..+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|+
T Consensus 199 Vep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~ 278 (499)
T TIGR01124 199 VEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGAL 278 (499)
T ss_pred EEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHH
Confidence 9999998763 3333 123456665433 244456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++|++++++++...+++++|+|+ +||+-.++ .++.+.++
T Consensus 279 ~lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~--~l~~~~~r 317 (499)
T TIGR01124 279 ALAGLKKYVALHGIRGQTLVAIL-SGANMNFH--RLRYVSER 317 (499)
T ss_pred HHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 99999998877655688899998 88884444 55555444
|
Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain. |
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=365.30 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=220.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++++. ++||++|+||||+++|++|+++|++|++|||+.++..|++.++.|||+|+.++. +
T Consensus 30 ~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 103 (380)
T TIGR01127 30 FKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD--D 103 (380)
T ss_pred cHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC--C
Confidence 8999999999999988863 469999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|..+|++||||
T Consensus 104 ~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvig 180 (380)
T TIGR01127 104 YDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDTVIVPVGGGGLISGVASAAKQINPNVKVIG 180 (380)
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999988 799999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+..+|++... .++.+..+++|+++.|+|+|+.+++++|++++|+++||++++
T Consensus 181 Ve~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~ 260 (380)
T TIGR01127 181 VEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAA 260 (380)
T ss_pred EEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHH
Confidence 9999998763 34332 23456665322 233445688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++++++.... .++++||+|+ +||+. |...|+.+.+.
T Consensus 261 ~laa~~~~~~~--~~~~~vv~i~-sGGn~--d~d~l~~vi~~ 297 (380)
T TIGR01127 261 GVAALLEQKVD--VKGKKIAVVL-SGGNI--DLNLLNKIIEK 297 (380)
T ss_pred HHHHHHhCccc--cCCCeEEEEe-CCCCC--CHHHHHHHHHH
Confidence 99999874322 3678899999 77884 44466666544
|
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes. |
| >PRK08813 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-50 Score=354.31 Aligned_cols=248 Identities=22% Similarity=0.254 Sum_probs=215.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|.. +.||++|+||||+|+|++|+++|++|+||||+++++.|++.++.|||+|+.+++ +
T Consensus 63 fK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~ 136 (349)
T PRK08813 63 YKVRGALNALLAGLERGDE----RPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--S 136 (349)
T ss_pred CHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 8999999999999999873 359999999999999999999999999999999999999999999999999975 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|. ||+||+|+|+||+++|++.+||+ +.++||+
T Consensus 137 ~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVig 209 (349)
T PRK08813 137 YDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVG 209 (349)
T ss_pred HHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEE
Confidence 899999999999885 8999999999998 789999999999874 79999999999999999999996 5699999
Q ss_pred EecCCCCccc---CCCC-----CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHH
Q 023695 161 IEPTESPVLS---GGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 229 (278)
Q Consensus 161 V~~~~~~~~~---~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a 229 (278)
|||++++++. .+++ ..+.++|++.. ..++.+..+.+|+++.|+|+|+.+++++|++++|+++||++|++
T Consensus 210 Vqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~a 289 (349)
T PRK08813 210 AQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALA 289 (349)
T ss_pred EEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHH
Confidence 9999997642 1222 23556777643 23445567889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 230 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 230 ~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++++++ .++++++|+ +|||- |...+.+++..
T Consensus 290 lAa~~~~------~~~~v~~vl-sGgN~--d~~~~~~~~~~ 321 (349)
T PRK08813 290 LAAGRRV------SGKRKCAVV-SGGNI--DATVLATLLSE 321 (349)
T ss_pred HHHHHHh------CCCCEEEEE-CCCCC--CHHHHHHHHHh
Confidence 9998762 456888888 89994 54466666653
|
|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=363.78 Aligned_cols=257 Identities=23% Similarity=0.300 Sum_probs=218.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+.+..+.+++.. ++||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++. +
T Consensus 50 fK~RgA~n~i~~l~~~~~~----~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~ 123 (403)
T PRK08526 50 YKIRGAYNKIANLSEEQKQ----HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--N 123 (403)
T ss_pred CHHHHHHHHHHhccHhhcC----CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--C
Confidence 8999999999998866541 569999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+ +.||+||+|+|+||+++|++.++|..+|+++|||
T Consensus 124 ~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvig 200 (403)
T PRK08526 124 YDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200 (403)
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999987 899999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++ ..+.++|++.... + +...++++|+++.|+|+|+.++++.|++++|+++||++++
T Consensus 201 Vep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~ 280 (403)
T PRK08526 201 VGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAA 280 (403)
T ss_pred EEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHH
Confidence 9999998763 2332 2344567664321 2 2233578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++++++...... .++++||+|+ |||+.++ ..+.++++.
T Consensus 281 ~lAall~~~~~~-~~~~~Vv~il-sGGnid~--~~~~~i~~~ 318 (403)
T PRK08526 281 SVAALLHQKIDL-KKGKKIGVVL-SGGNIDV--QMLNIIIEK 318 (403)
T ss_pred HHHHHHhCcccc-ccCCeEEEEE-CCCCCCH--HHHHHHHHH
Confidence 999988532211 3577888888 8899544 466666554
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=366.55 Aligned_cols=257 Identities=23% Similarity=0.331 Sum_probs=217.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+++..+.+.+. . +.||++|+||||+|+|++|+++|++|+||||++++..|++.++.|||+|+.+++ +
T Consensus 55 fK~Rga~~~i~~~~~~~~-~---~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~ 128 (406)
T PRK06382 55 FKSRGAVFKFSKLSEDEL-R---NGVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--D 128 (406)
T ss_pred CHHHHHHHHHHhcchhcc-C---CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--C
Confidence 899999999998877654 2 359999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+||+|+|+||+++|+++++|..+|++||||
T Consensus 129 ~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vig 205 (406)
T PRK06382 129 YDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIG 205 (406)
T ss_pred HHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEE
Confidence 889999999998885 7899999999988 789999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCcc----cCCCC-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVL----SGGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~----~~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++ ..+++ ..+.++|++.+. .++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 206 Ve~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~ 285 (406)
T PRK06382 206 IESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAV 285 (406)
T ss_pred EEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHH
Confidence 999999875 23333 234567776643 233455788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcC---CcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGER---YLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~---~~~~~~~~~~~~ 269 (278)
++++++.. + ...++++||+|+ +||+. +++..+.+.|..
T Consensus 286 ~laal~~~-~-~~~~~~~Vv~i~-sGGn~d~~~~~~~~~~~~~~ 326 (406)
T PRK06382 286 GLAAIMEG-K-VDVKGKKVAIVV-SGGNINPLLMSKIIYKELEN 326 (406)
T ss_pred HHHHHHhc-c-ccCCCCEEEEEe-CCCCCCHHHHHHHHHHHHHh
Confidence 99877542 2 123567888888 78994 344444444433
|
|
| >PLN02970 serine racemase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=356.02 Aligned_cols=250 Identities=19% Similarity=0.224 Sum_probs=211.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++.. ++||++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++. +
T Consensus 57 fKdRga~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~ 130 (328)
T PLN02970 57 FKFRGACNAIFSLSDDQAE----KGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--T 130 (328)
T ss_pred cHHHHHHHHHHHhhHhhcC----CeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--C
Confidence 8999999999998865541 579999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++.+.+.+++++++ ++++|++||+|+.+ ..||+|+++||++|++ .||+||+|+|+||+++|++++||+.+|++|||+
T Consensus 131 ~~~~~~~a~~la~~-~g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~ 207 (328)
T PLN02970 131 VESREAVAARVQQE-TGAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIA 207 (328)
T ss_pred HHHHHHHHHHHHHh-cCCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEE
Confidence 78888889998887 48999999999987 6899999999999994 699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCC--CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGF--VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 229 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a 229 (278)
|||++++++. .+++ .++..++++.+. .++...++.+|+++.|+|+|+++++++|++++|+++||++|++
T Consensus 208 Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~ 287 (328)
T PLN02970 208 AEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIG 287 (328)
T ss_pred EEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHH
Confidence 9999998653 2322 123445554431 1233446788999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CC-CC-CCeEEEEecCCCcCCcc
Q 023695 230 AAAAIEIAKR-PE-NA-GKLIVVIFPSFGERYLS 260 (278)
Q Consensus 230 ~aa~~~~~~~-~~-~~-~~~vv~i~~~gG~~~~~ 260 (278)
++++++...+ +. .+ +++||+++ |||+..++
T Consensus 288 laaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~ 320 (328)
T PLN02970 288 LAAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLG 320 (328)
T ss_pred HHHHHhCcccccccccCCCeEEEEE-CCCCCCHH
Confidence 9998864332 22 23 46788888 88996544
|
|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=369.64 Aligned_cols=258 Identities=22% Similarity=0.292 Sum_probs=222.6
Q ss_pred CccHHHHHHHHHHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~-g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||+|+|.+++..+.++ +. +.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+.++.
T Consensus 50 fK~RgA~n~i~~l~~~~~~-----~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~-- 122 (504)
T PRK09224 50 FKLRGAYNKMAQLTEEQLA-----RGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD-- 122 (504)
T ss_pred ChHHHHHHHHHhhhHHhcC-----CEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--
Confidence 8999999999987643 33 579999999999999999999999999999999999999999999999999985
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
+++++.+.+++++++. +++|++||+||.+ ++|++|+++||++|+++.||+||+|+|||||++|++.++|..+|++|||
T Consensus 123 ~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVi 200 (504)
T PRK09224 123 SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVI 200 (504)
T ss_pred CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEE
Confidence 7899999999998885 8899999999998 7899999999999996559999999999999999999999999999999
Q ss_pred EEecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
||||++++++. .+++. .+.++|++... .++.+.++++|++++|+|+|+.++++.|++++|+++||++|
T Consensus 201 gVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA 280 (504)
T PRK09224 201 GVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGA 280 (504)
T ss_pred EEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHH
Confidence 99999998763 33332 22345665432 23445578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+++|+++++.++...+++++|+|+ +||+ +|...+..+.++
T Consensus 281 ~~lAal~~~~~~~~~~g~~vv~i~-sG~n--~~~~~l~~~~~r 320 (504)
T PRK09224 281 LALAGLKKYVAQHGIEGETLVAIL-SGAN--MNFDRLRYVAER 320 (504)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEEE-CCCC--CCHHHHHHHHHH
Confidence 999999998877655688899888 7788 444456665554
|
|
| >PRK06352 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=357.69 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=212.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++ .++.|+.+++.|||+|+.+++
T Consensus 58 ~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~-- 130 (351)
T PRK06352 58 FKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG-- 130 (351)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--
Confidence 899999999999999986 689999999999999999999999999999997 589999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCC----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN---- 155 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~---- 155 (278)
+++++.+.+++++++. ++++++ +.||.+ +.||.++++||++|++..||+||+|+|+||+++|++++||+.+++
T Consensus 131 ~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~ 207 (351)
T PRK06352 131 NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASG 207 (351)
T ss_pred CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCC
Confidence 5788889999988874 566665 458888 689999999999999667999999999999999999999998876
Q ss_pred -cEEEEEecCCCCcccCCCCCC---ccccccCCCC-Cccccccccc----CeEEEeCHHHHHHHHHHHHHhcCceeeccH
Q 023695 156 -IKLYGIEPTESPVLSGGKPGP---HKIQGIGAGF-VPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISS 226 (278)
Q Consensus 156 -~~vigV~~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~~----~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~s 226 (278)
++||+|||++++++..+++.. +..+++..+. ..+......+ +.++.|+|+|+++++++|++++||++||+|
T Consensus 208 ~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepss 287 (351)
T PRK06352 208 LPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGS 287 (351)
T ss_pred CCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhH
Confidence 899999999998765554431 2223433221 1111112233 348999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 227 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 227 g~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
|+++++++++++++. .++++||+++|++|+||+++.
T Consensus 288 aaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 288 AASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 999999999887543 457889999988899999864
|
|
| >PRK08638 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=351.54 Aligned_cols=256 Identities=23% Similarity=0.303 Sum_probs=213.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+.... ++|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 57 ~KdR~a~~~i~~~~~~~~~----~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 130 (333)
T PRK08638 57 FKIRGAFNKLSSLTDAEKR----KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--N 130 (333)
T ss_pred cHHHHHHHHHHhccHHhcC----CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--C
Confidence 8999999999987764321 569999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ..||+++++||++|+ +++|+||+|+|+||+++|++.+||+.+|+++||+
T Consensus 131 ~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vig 207 (333)
T PRK08638 131 FNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIG 207 (333)
T ss_pred HHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEE
Confidence 788889999998886 7899999999988 789999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCCCc-----cccccCCCCCccccc----ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 161 IEPTESPVLS----GGKPGPH-----KIQGIGAGFVPGVLE----VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~~~-----~~~gl~~~~~~~~~~----~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|||++++++. .+.+..+ ..+++... .|..+. ++++|+++.|+|+|+++++++|++++|++++|++|
T Consensus 208 Vep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA 286 (333)
T PRK08638 208 VQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGA 286 (333)
T ss_pred EEECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHH
Confidence 9999997543 3443322 23344322 233222 47899999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++++++.........+++++|+|+ +||+.+++ .|.+++.
T Consensus 287 ~~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~--~~~~~~~ 325 (333)
T PRK08638 287 LATAALLSGKLDQYIQNKKVVAII-SGGNVDLS--RVSQITG 325 (333)
T ss_pred HHHHHHHhCCcccccCCCcEEEEE-CCCCCCHH--HHHHHHH
Confidence 888877643222224677899999 78998776 5555553
|
|
| >PRK08329 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=353.07 Aligned_cols=248 Identities=19% Similarity=0.207 Sum_probs=216.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 87 fKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~ 159 (347)
T PRK08329 87 FKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--D 159 (347)
T ss_pred CHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999987 689999999999999999999999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC------C
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN------P 154 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~------~ 154 (278)
++++.+.+++++++. +.+|++++.||.+ ++||+|+++||++|++ .||+||+|+|+||+++|++++||+.. +
T Consensus 160 ~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~ 236 (347)
T PRK08329 160 RMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISK 236 (347)
T ss_pred HHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 677778888888775 6788899999988 7899999999999995 89999999999999999999999873 5
Q ss_pred CcEEEEEecCCCCcccC-CCCCCccccccCCCCCcc-----cccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 155 NIKLYGIEPTESPVLSG-GKPGPHKIQGIGAGFVPG-----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 155 ~~~vigV~~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
.+|||+|||+++.++.. .....+.+++++.+..+. .+.+++.+.++.|+|+|++++++.|++ +||++||+||+
T Consensus 237 ~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~ 315 (347)
T PRK08329 237 MPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAV 315 (347)
T ss_pred CCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHH
Confidence 68999999999876643 223445667777554332 223566778999999999999999986 79999999999
Q ss_pred HHHHHHHHHhcCCC-CCCeEEEEecCCCcCCc
Q 023695 229 AAAAAIEIAKRPEN-AGKLIVVIFPSFGERYL 259 (278)
Q Consensus 229 a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~ 259 (278)
++++++++.+++.. ++++||+++|++|.|++
T Consensus 316 a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 316 ALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 99999999998763 67899999988888875
|
|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=360.52 Aligned_cols=257 Identities=20% Similarity=0.290 Sum_probs=217.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE---EEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL---VLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v---~~~~~ 77 (278)
||+|++.+++.++.+.. .. +.||++|+||||+++|++|+++|++|+||||+++++.|++.++.|||+| +.++
T Consensus 46 fK~RgA~~~i~~l~~~~-~~---~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g- 120 (409)
T TIGR02079 46 YKIRGAYNFLKQLSDAQ-LA---KGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG- 120 (409)
T ss_pred cHHHHHHHHHHhCCHHh-hC---CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC-
Confidence 89999999998754322 22 4699999999999999999999999999999999999999999999974 4444
Q ss_pred CCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 78 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
.+++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.+||+.+|+++
T Consensus 121 -~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~ 197 (409)
T TIGR02079 121 -DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTK 197 (409)
T ss_pred -CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCE
Confidence 36899999999998885 7899999999988 78999999999999965699999999999999999999999999999
Q ss_pred EEEEecCCCCccc----CCCCC-----CccccccCCCCCc---ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 158 LYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
||||||++++++. .+++. .+.++|++....+ +.+...++|+++.|+|+|+.++++.|++++|+++||+
T Consensus 198 vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~a 277 (409)
T TIGR02079 198 IIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPA 277 (409)
T ss_pred EEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecch
Confidence 9999999998764 24431 3445676654332 2334678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 226 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
||+++|+++++.++ .++++||+|+ +|||-+++ .+.+++++
T Consensus 278 gaa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~--~~~~~~~~ 317 (409)
T TIGR02079 278 GALSIAALERLGEE--IKGKTVVCVV-SGGNNDIE--RTEEIRER 317 (409)
T ss_pred HHHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 99999999987644 4688999999 78995444 55666554
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway. |
| >PRK08197 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=357.76 Aligned_cols=252 Identities=25% Similarity=0.241 Sum_probs=216.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|.++|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 110 fKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~ 182 (394)
T PRK08197 110 FKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--L 182 (394)
T ss_pred cHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999987 789999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC-CCEEEEecCCCccHHHHHHHHHhh-------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK------- 152 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~k~~------- 152 (278)
++++.+.+++++++. ++++++++.||.+ ++|++|+++||++|++++ ||+||+|+|+||+++|++++|++.
T Consensus 183 ~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~ 260 (394)
T PRK08197 183 ISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIG 260 (394)
T ss_pred HHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcC
Confidence 788888888888775 7899999999998 789999999999999754 999999999999999999999987
Q ss_pred CCCcEEEEEecCCCCccc----CCCCC-------CccccccCCCCCcc--c-c--cccccCeEEEeCHHHHHHHHHHHHH
Q 023695 153 NPNIKLYGIEPTESPVLS----GGKPG-------PHKIQGIGAGFVPG--V-L--EVNIIDEVVQVSSDEAIETAKLLAL 216 (278)
Q Consensus 153 ~~~~~vigV~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~--~-~--~~~~~~~~~~v~d~e~~~a~~~l~~ 216 (278)
++.+|||+|||++++++. .+... .+..+++..+.... . + .+++.+..+.|+|+|++++++.|++
T Consensus 261 ~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~ 340 (394)
T PRK08197 261 GKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAR 340 (394)
T ss_pred CCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHh
Confidence 388999999999997663 22211 12233443221110 1 1 1356678999999999999999999
Q ss_pred hcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 217 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 217 ~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
++||++||+||+++++++++.+++. .++++||+++|++|.||+++
T Consensus 341 ~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 341 EEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred cCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 9999999999999999999988765 35789999999999999874
|
|
| >PRK02991 D-serine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=359.17 Aligned_cols=265 Identities=20% Similarity=0.241 Sum_probs=218.5
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||+|++.++|.. ++++|.+.|+. ++||++|+||||+|+|++|+++|++|+||||+++++
T Consensus 114 FK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~ 193 (441)
T PRK02991 114 IKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQ 193 (441)
T ss_pred hHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 899999999875 56888887764 479999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--------CCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--------~~d~ 131 (278)
.|++.|+.|||+|+.+++ +++++.+.+++++++.++++|+++++++.. ++||+|+++||++|+++ .||+
T Consensus 194 ~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~ 270 (441)
T PRK02991 194 WKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLF 270 (441)
T ss_pred HHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCE
Confidence 999999999999999996 789999999999887656889999877776 89999999999999952 2679
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCC---ccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~ 192 (278)
||+|+|+||+++|++.+||+. .++++||+|||++++++. .++. ..+.++|++.+.. ++.+.
T Consensus 271 VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~ 350 (441)
T PRK02991 271 VYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAM 350 (441)
T ss_pred EEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHH
Confidence 999999999999999999997 688999999999997652 3332 1244567765432 23344
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCC-------C---CCCeEEEEecCCCcCCcchh
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-------N---AGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~-------~---~~~~vv~i~~~gG~~~~~~~ 262 (278)
++.+|+++.|+|+|+.++++.|++++|+++||++|+++++++++.+... . ++++||++. |||+. .+..
T Consensus 351 ~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~-~gg~~-~~~~ 428 (441)
T PRK02991 351 ERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWA-TGGSM-VPEE 428 (441)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEE-CCCCC-CCHH
Confidence 6789999999999999999999999999999999999999987654321 1 467777777 66654 2223
Q ss_pred hcHHHHHH
Q 023695 263 LFESVRKE 270 (278)
Q Consensus 263 ~~~~~~~~ 270 (278)
.++++...
T Consensus 429 ~~~~~~~~ 436 (441)
T PRK02991 429 EMEQYLAK 436 (441)
T ss_pred HHHHHHHh
Confidence 55555544
|
|
| >PRK06608 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=352.67 Aligned_cols=246 Identities=20% Similarity=0.195 Sum_probs=208.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|++. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++.
T Consensus 53 ~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~--- 126 (338)
T PRK06608 53 FKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT--- 126 (338)
T ss_pred cHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---
Confidence 89999999999999999753 479999999999999999999999999999999999999999999999999974
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.+++.+.+++ +++ +++||++||+|+.+ ++||++++.||++|++.+||+||+|+|+||+++|+++++|..++.++||+
T Consensus 127 ~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vig 203 (338)
T PRK06608 127 RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIG 203 (338)
T ss_pred HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEE
Confidence 3667777777 544 47899999999988 68999999999999966899999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC------CCccccccCCCCCcc-ccc-ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP------GPHKIQGIGAGFVPG-VLE-VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~------~~~~~~gl~~~~~~~-~~~-~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||.+++++. .+++ ..+..++++.+.... .+. .+.+|+.+.|+|+|++++++.|++++|+++||+||+
T Consensus 204 Vep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa 283 (338)
T PRK06608 204 SEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAI 283 (338)
T ss_pred EeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHH
Confidence 9999997542 3332 134456766533211 121 134789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
+++++++++++. .++++||+|+ +||++
T Consensus 284 ~laa~~~~~~~~-~~~~~Vv~v~-tgg~~ 310 (338)
T PRK06608 284 NMVAVVNWLKTQ-SKPQKLLVIL-SGGNI 310 (338)
T ss_pred HHHHHHhhchhh-cCCCeEEEEe-CCCcc
Confidence 999999986653 3578899999 55764
|
|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=360.31 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=217.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC-CCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-PAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~-~~~ 79 (278)
||+|+|.+++.++.+ +.. .++||++|+||||+++|++|+++|++|+||||+++++.|+..++.|||+|+.+. ...
T Consensus 55 fK~RgA~~~i~~l~~-~~~---~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~ 130 (420)
T PRK08639 55 YKLRGAYNAISQLSD-EEL---AAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGD 130 (420)
T ss_pred cHHHHHHHHHHhCCH-Hhh---CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCc
Confidence 899999999988532 221 157999999999999999999999999999999999999999999999754322 124
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC--CCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~--~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|+++
T Consensus 131 ~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~ 208 (420)
T PRK08639 131 TFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTK 208 (420)
T ss_pred CHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCE
Confidence 6899999999998885 7999999999988 789999999999999655 99999999999999999999999999999
Q ss_pred EEEEecCCCCccc----CCCC-----CCccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 158 LYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
||||||++++++. .+.+ ..+.++|++.... ++.+.++++|+++.|+|+|+.++++.|++++|+++||+
T Consensus 209 vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~s 288 (420)
T PRK08639 209 IIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPA 288 (420)
T ss_pred EEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecch
Confidence 9999999998764 2332 2345677765433 33345788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 226 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
+|+++++++++.+. .++++||+|+ |||+.+++ .+.+++++
T Consensus 289 ga~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~~--~~~~~~~~ 328 (420)
T PRK08639 289 GALSIAALELYKDE--IKGKTVVCVI-SGGNNDIE--RMPEIKER 328 (420)
T ss_pred HHHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCHH--HHHHHHHH
Confidence 99999999886543 3678999999 88996554 55665544
|
|
| >PRK07048 serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=351.23 Aligned_cols=248 Identities=21% Similarity=0.283 Sum_probs=210.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++||++|+||||+|+|++|+.+|++|++|||+++++.|++.++.|||+|+.++. .
T Consensus 54 ~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~ 127 (321)
T PRK07048 54 FKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--Y 127 (321)
T ss_pred eeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999999885433 1569999999999999999999999999999999999999999999999999996 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+|+.+ ..||+|+++||++|+ +.||+||+|+|+||+++|+++++|+.+++++||+
T Consensus 128 ~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~EI~~q~-~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vig 204 (321)
T PRK07048 128 TEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGCALAARALSPGCKVYG 204 (321)
T ss_pred HHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHHHHHhhc-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEE
Confidence 677888889998885 7899999999987 789999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCcc----cCCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVL----SGGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~----~~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++ ..++.. .+..+++.... .......+++|+++.|+|+|+++++++|++++|+++||++++
T Consensus 205 vep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~ 284 (321)
T PRK07048 205 VEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCL 284 (321)
T ss_pred EeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHH
Confidence 999998753 233321 12234433211 122234678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
++++++++.++ .++++||+|+ |||+.+++
T Consensus 285 ~laa~~~~~~~--~~~~~vv~i~-tGGn~~~~ 313 (321)
T PRK07048 285 GAAAALRGKVP--LKGKRVGVII-SGGNVDLA 313 (321)
T ss_pred HHHHHHhCchh--cCCCeEEEEe-CCCCCCHH
Confidence 99999987654 3678888888 78996554
|
|
| >PRK07476 eutB threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=351.18 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=216.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|.. ++||++|+||||+|+|++|+++|++|+||||+++++.|+..|+.|||+|+.+++ +
T Consensus 49 ~K~R~a~~~i~~a~~~~~~----~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~ 122 (322)
T PRK07476 49 FKLRGATNALLSLSAQERA----RGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--S 122 (322)
T ss_pred chHHHHHHHHHhhhhhhhC----CeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 8999999999999998872 349999999999999999999999999999999999999999999999999985 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||+++++||++|++ ++|+||+|+|+||+++|++++||..+|+++||+
T Consensus 123 ~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vig 199 (322)
T PRK07476 123 QDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIG 199 (322)
T ss_pred HHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888899988875 7899999999998 7899999999999994 799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCC-----CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAG-----FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 226 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~-----~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~s 226 (278)
|||++++++. .+++ ..+..++++.+ ..+..+.+..+|+.+.|+|+|+++++++|++++|+++||++
T Consensus 200 Ve~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~ 279 (322)
T PRK07476 200 VSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAG 279 (322)
T ss_pred EEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChh
Confidence 9999887543 2332 12334444322 12334456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHh
Q 023695 227 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 271 (278)
Q Consensus 227 g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 271 (278)
+++++++++. .....+++||+++ |||+ +|...|++++.+.
T Consensus 280 a~~laal~~~--~~~~~~~~Vvvi~-tGg~--~~~~~~~~~~~~~ 319 (322)
T PRK07476 280 AVGIAALLAG--KIAARDGPIVVVV-SGAN--IDMELHRRIINGE 319 (322)
T ss_pred HHHHHHHHhC--CcccCCCcEEEEE-CCCC--CCHHHHHHHHhhh
Confidence 9999998842 1122347888888 7888 4555777776553
|
|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=360.99 Aligned_cols=248 Identities=25% Similarity=0.368 Sum_probs=215.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++. +
T Consensus 52 ~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~ 125 (404)
T PRK08198 52 FKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--V 125 (404)
T ss_pred CHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--C
Confidence 899999999999886554 2679999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|+++|||
T Consensus 126 ~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiig 202 (404)
T PRK08198 126 YDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIG 202 (404)
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999988 789999999999999 4799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+..+|++... .++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 203 Ve~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~ 282 (404)
T PRK08198 203 VQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAV 282 (404)
T ss_pred EEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHH
Confidence 9999998763 23332 23345554321 234455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
++|+++++.+. .+++++|+++ +||+.+++
T Consensus 283 ~lAal~~~~~~--~~~~~vv~vl-~ggn~~~~ 311 (404)
T PRK08198 283 SVAALLSGKLD--VKGKKVVAVL-SGGNIDVL 311 (404)
T ss_pred HHHHHHhchhh--cCCCeEEEEE-CCCCCCHH
Confidence 99999986532 3678899999 67886555
|
|
| >PRK06721 threonine synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=349.91 Aligned_cols=254 Identities=21% Similarity=0.262 Sum_probs=214.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++
T Consensus 58 ~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~-- 130 (352)
T PRK06721 58 FKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG-- 130 (352)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--
Confidence 899999999999999986 6899999999999999999999999999999974 78999999999999999985
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHH----HHHHhhC-C
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAG----KFLKEKN-P 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~----~~~k~~~-~ 154 (278)
+++++.+.+++++++. ++++++ +.||.+ ..||.++++||++|+++.||+||+|+|+||+++|++ +++|..+ |
T Consensus 131 ~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~ 207 (352)
T PRK06721 131 NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYK 207 (352)
T ss_pred CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence 6788888999998875 566665 568877 789999999999999667999999999999999855 4455554 8
Q ss_pred CcEEEEEecCCCCcccCCCCC---CccccccCCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 155 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 155 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
.++||+|||++++++..++.. .+..++++.+. |.. ....++|+++.|+|+|+++++++|++++||++||+
T Consensus 208 ~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~veps 286 (352)
T PRK06721 208 KPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPG 286 (352)
T ss_pred CCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCch
Confidence 999999999999877655432 22334554332 211 12457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchhhcH
Q 023695 226 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
+|+++++++++++++. .++++||+++|++|.||++...-+
T Consensus 287 sgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~ 327 (352)
T PRK06721 287 SNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISS 327 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhh
Confidence 9999999999987654 457899999999999999875534
|
|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-49 Score=357.25 Aligned_cols=256 Identities=22% Similarity=0.299 Sum_probs=219.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .+.||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +
T Consensus 53 ~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~ 126 (403)
T PRK07334 53 FKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--T 126 (403)
T ss_pred chHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--C
Confidence 899999999998765432 1459999999999999999999999999999999999999999999999999975 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ .+||+|+++||++|+ +.||+||+|+|+|||++|++++||..+|++|||+
T Consensus 127 ~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ 203 (403)
T PRK07334 127 LDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIG 203 (403)
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 888999999998875 7899999999988 799999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCcccC---CCC----CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHH
Q 023695 161 IEPTESPVLSG---GKP----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 230 (278)
Q Consensus 161 V~~~~~~~~~~---~~~----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~ 230 (278)
|||++++++.. +.. .++.++|++.+ ..++.+..+++|+++.|+|+|++++++.|++++|+++||++|+++
T Consensus 204 ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~ 283 (403)
T PRK07334 204 VQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGL 283 (403)
T ss_pred EEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHH
Confidence 99999987642 211 23566777742 345666778899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHH
Q 023695 231 AAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270 (278)
Q Consensus 231 aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 270 (278)
++++++.++ .++++||+++ +||+. +..++.+++..
T Consensus 284 aa~~~~~~~--~~~~~vv~i~-~ggn~--d~~~l~~il~~ 318 (403)
T PRK07334 284 AALLAYPER--FRGRKVGLVL-SGGNI--DTRLLANVLLR 318 (403)
T ss_pred HHHHhCchh--cCCCeEEEEE-CCCCC--CHHHHHHHHHH
Confidence 999886554 3677899999 66774 33355554433
|
|
| >PRK07591 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=356.60 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=217.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|.++|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 120 fKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~ 192 (421)
T PRK07591 120 FKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--N 192 (421)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999987 679999999999999999999999999999999999999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC-CCEEEEecCCCccHHHHHHHHHhh-------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK------- 152 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~k~~------- 152 (278)
++++.+.+++++++.+++++++++.||.. ++|++|+++||++|+++. ||+||+|+|+||+++|++++|+++
T Consensus 193 ~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~ 271 (421)
T PRK07591 193 YDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVE 271 (421)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCcc
Confidence 88899999999887657889998888887 789999999999999655 999999999999999999999997
Q ss_pred CCCcEEEEEecCCCCccc----CCCC------CCccccccCCCCCc-----ccccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 153 NPNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 153 ~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
.+.+|||+|||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++++.|++.
T Consensus 272 ~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~ 351 (421)
T PRK07591 272 DKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLART 351 (421)
T ss_pred CCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhc
Confidence 578999999999987654 2221 12233444322111 11224667789999999999999999999
Q ss_pred cCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 218 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 218 ~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+||++||+||+++++++++.+++. .++++||+++|++|+||++.
T Consensus 352 eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 352 EGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred CCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHH
Confidence 999999999999999999988765 36789999997779998874
|
|
| >TIGR02991 ectoine_eutB ectoine utilization protein EutB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=344.56 Aligned_cols=252 Identities=19% Similarity=0.241 Sum_probs=211.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+... .++|+++|+||||+|+|++|+++|++|+||||+++++.|++.++.|||+|+.++. +
T Consensus 49 ~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~ 122 (317)
T TIGR02991 49 FKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--S 122 (317)
T ss_pred cHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--C
Confidence 899999999998764322 1469999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +++|+||+|+|+||+++|++++||+.+|.+|||+
T Consensus 123 ~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vig 199 (317)
T TIGR02991 123 QDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIG 199 (317)
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEE
Confidence 788888899998875 7899999999998 789999999999999 4689999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccC----C-CCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIG----A-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 226 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~----~-~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~s 226 (278)
|||++++++. .+++ .++.+++++ . +..++.+..+++|+++.|+|+|++++++.|++++|+++||++
T Consensus 200 vep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~ 279 (317)
T TIGR02991 200 VSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAG 279 (317)
T ss_pred EEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchH
Confidence 9999887663 2332 223445442 1 123455567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHH
Q 023695 227 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 267 (278)
Q Consensus 227 g~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 267 (278)
++++|+++... . ..++++|+|+ |||+. |...+..+
T Consensus 280 a~~~Aal~~~~--~-~~~~~vvvvl-tG~n~--~~~~~~~~ 314 (317)
T TIGR02991 280 AVGIAALLAGK--I-KNPGPCAVIV-SGRNI--DMDLHKRI 314 (317)
T ss_pred HHHHHHHHcCc--c-ccCCcEEEEe-CCCCC--CHHHHHHH
Confidence 99999997421 1 2466888888 88884 44455544
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. |
| >PRK06110 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=346.57 Aligned_cols=255 Identities=23% Similarity=0.284 Sum_probs=216.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|... +.|+++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +
T Consensus 51 ~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~ 125 (322)
T PRK06110 51 FKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--D 125 (322)
T ss_pred cHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999999887643 459999999999999999999999999999999999999999999999999974 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. ++||+++| ||.+ +.||.|+++||++|++ .+|+||+|+|+||+++|+++++|+.+|++|||+
T Consensus 126 ~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~ 201 (322)
T PRK06110 126 FQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVG 201 (322)
T ss_pred HHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 888888999988885 78999998 5665 6899999999999994 799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC-c--ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .++.. .+..++++.... + +.+.++++|+++.|+|+|++++++.|++++|+++||++++
T Consensus 202 Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa 281 (322)
T PRK06110 202 VVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAA 281 (322)
T ss_pred EeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHH
Confidence 9999998753 33322 234455543221 2 1223588999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++++++++.+. .++++||+|+ |||+.+++ .|.+++.
T Consensus 282 ~laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~--~~~~~~~ 317 (322)
T PRK06110 282 ALAAALQERER--LAGKRVGLVL-SGGNIDRA--VFARVLA 317 (322)
T ss_pred HHHHHHhChhh--hCCCcEEEEE-CCCCCCHH--HHHHHHh
Confidence 99999986554 3577888888 88996554 6666554
|
|
| >PRK07409 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=347.82 Aligned_cols=251 Identities=21% Similarity=0.267 Sum_probs=213.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.+++++|. ++||++|+||||+++|++|+.+|++|+||||++ .+..|++.++.|||+|+.+++
T Consensus 61 fKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~-- 133 (353)
T PRK07409 61 FKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG-- 133 (353)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--
Confidence 899999999999999886 689999999999999999999999999999997 588999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
+++++.+.++++++++ +++++++ .||.+ +.||.|+++||++|+++.||+||+|+|+||+++|++.+|+...+
T Consensus 134 ~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~ 210 (353)
T PRK07409 134 NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKST 210 (353)
T ss_pred CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcc
Confidence 6888999999998876 4677765 58887 68999999999999966799999999999999999999998643
Q ss_pred -CcEEEEEecCCCCcccCCCCC---CccccccCCCCCcccc------cccccCeEEEeCHHHHHHHHHHHHHhcCceeec
Q 023695 155 -NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 224 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p 224 (278)
.+|||+|||.+++++..+++. .+..++++.+. |..+ .+++.++++.|+|+|+++++++|++++|+++||
T Consensus 211 ~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~p 289 (353)
T PRK07409 211 KLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEP 289 (353)
T ss_pred CCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCc
Confidence 589999999999877655443 22334444331 2221 234556899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 225 SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 225 ~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
++|+++++++++.+++. .++++||+++|++|+||+++.
T Consensus 290 ssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 290 ASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 99999999999887643 357899999988899999853
|
|
| >PRK06815 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=343.54 Aligned_cols=244 Identities=25% Similarity=0.332 Sum_probs=208.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++.. .++||++|+||||+|+|++|+++|++|+||||+++++.|+..++.+||+|+.+++ +
T Consensus 50 ~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~ 123 (317)
T PRK06815 50 FKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--D 123 (317)
T ss_pred cHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999987644321 1469999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.+||+.+++++||+
T Consensus 124 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vig 200 (317)
T PRK06815 124 ALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIG 200 (317)
T ss_pred HHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEE
Confidence 788888888888875 7889999999987 6899999999999995 699999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC----cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV----PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~----~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
|||++++++. .+++. .+.+++++.+.. +..+.++++|+++.|+|+|++++++.|++++||++||++|
T Consensus 201 Vep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg 280 (317)
T PRK06815 201 CWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAG 280 (317)
T ss_pred EEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHH
Confidence 9999998764 23321 234555543322 2234567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
+++++++++.++ .++++||+|+|+ |+
T Consensus 281 ~alaa~~~~~~~--~~~~~vv~i~tG-~~ 306 (317)
T PRK06815 281 VALAAALKLAPR--YQGKKVAVVLCG-KN 306 (317)
T ss_pred HHHHHHHhCchh--cCCCcEEEEECC-CC
Confidence 999999998765 367889999955 55
|
|
| >TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=347.96 Aligned_cols=252 Identities=20% Similarity=0.231 Sum_probs=213.7
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||||++.++|.. +++.|.++|+. ++||++|+||||+|+|++|+.+|++|+||||+++++
T Consensus 109 fKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~ 188 (431)
T TIGR02035 109 IKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQ 188 (431)
T ss_pred cHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 899999999875 77899988874 479999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--------CCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--------~~d~ 131 (278)
.|++.++.|||+|+.+++ +|+++.+.+++++++.+++|+++++ |+.+.++||+|+++||++|+++ .||+
T Consensus 189 ~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~ 265 (431)
T TIGR02035 189 WKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLF 265 (431)
T ss_pred HHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCE
Confidence 999999999999999996 7899999999999887667788874 5555689999999999999952 4779
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCCcc---ccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFVPG---VLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~~~---~~~ 192 (278)
|++|+|+||+++||+++||+. +++++||+|||++++++. .++. ..+.++||+.+..+. .+.
T Consensus 266 V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~ 345 (431)
T TIGR02035 266 VYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLM 345 (431)
T ss_pred EEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHH
Confidence 999999999999999999997 889999999999997642 2221 235567777654322 233
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC-----------C-CCCCeEEEEecCCCc
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP-----------E-NAGKLIVVIFPSFGE 256 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~-----------~-~~~~~vv~i~~~gG~ 256 (278)
++++|+++.|+|+|+.++++.|++++|+++||+||++++++.++.+.. + .++.+.+++. |||.
T Consensus 346 ~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~~ 420 (431)
T TIGR02035 346 EPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWA-TGGG 420 (431)
T ss_pred HHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEe-cCCC
Confidence 568999999999999999999999999999999999999999887663 0 1456778888 5554
|
This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine. |
| >KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=334.72 Aligned_cols=250 Identities=23% Similarity=0.263 Sum_probs=221.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||.|++.+++.+.-++++ + ..++++|.||||+|+|++|+++|+|++||||..++..|++.++.+||+|+..+. +
T Consensus 96 FK~RGa~~~~~kla~~~~-~---~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~ 169 (457)
T KOG1250|consen 96 FKIRGAGNALQKLAKQQK-K---AGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--D 169 (457)
T ss_pred eehhhHHHHHHHHHHhhh-c---CceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--c
Confidence 899999999998877764 1 579999999999999999999999999999999999999999999999999985 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++...|.+++++. ++.|++|||+|+. ++|++|++.||.+|+...+++|+||||+||+++||+.++|...|+++|||
T Consensus 170 ~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIG 247 (457)
T KOG1250|consen 170 WDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIG 247 (457)
T ss_pred HHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEE
Confidence 999999999999987 8999999999998 78999999999999966666999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
||++++.++. .+++. .+.++|++...+ ++.+.+.++|+.+.|+|+|+..++.++.++|...+||++|+
T Consensus 248 VEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaa 327 (457)
T KOG1250|consen 248 VETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAA 327 (457)
T ss_pred EeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHH
Confidence 9999998764 45543 334577776543 44566889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
++++++.. +....+++++|.++ +|++-..+
T Consensus 328 aLaai~~~-~~~~lk~~~vv~il-sG~n~~~~ 357 (457)
T KOG1250|consen 328 ALAAIYSG-KLNHLKGKKVVSIL-SGGNIDFD 357 (457)
T ss_pred HHHHHHhc-cccccCCceEEeec-ccCCCCcc
Confidence 99999987 54557889999998 67664333
|
|
| >cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=346.30 Aligned_cols=237 Identities=21% Similarity=0.258 Sum_probs=204.5
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||||++.++|.. +++.|.++||. ++||++||||||+|+|++|+.+|++|+||||+++++
T Consensus 91 fKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~ 170 (404)
T cd06447 91 IKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQ 170 (404)
T ss_pred hHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcH
Confidence 899999999864 78899999885 479999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC---C-----CCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~-----~d~ 131 (278)
.|++.|+.|||+|+.+++ +++++.+.+++++++.++.+|+++++++.. ++||+|+|+||++|+++ + ||+
T Consensus 171 ~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~ 247 (404)
T cd06447 171 WKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLF 247 (404)
T ss_pred HHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCE
Confidence 999999999999999985 688999999999988766788999765554 89999999999999952 3 558
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCC---ccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~ 192 (278)
||+|+|+||+++|++++||+. .|+++||+|||++++.+. .+.. ..+.++||+.+.. ++.+.
T Consensus 248 VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~ 327 (404)
T cd06447 248 VYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLM 327 (404)
T ss_pred EEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHH
Confidence 999999999999999999997 789999999999987652 2222 2244566665432 23334
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
++.+|+++.|+|+|+.++++.|++++|+++||+||+++++++++.++.
T Consensus 328 ~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 328 EPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999999999987764
|
D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids. |
| >cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=340.47 Aligned_cols=248 Identities=23% Similarity=0.266 Sum_probs=213.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|++|||+++++.|+++|+.+||+|+.++. +
T Consensus 53 ~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~ 125 (324)
T cd01563 53 FKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--N 125 (324)
T ss_pred HHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--c
Confidence 799999999999999885 689999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhC------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------ 153 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~------ 153 (278)
++++.+.+++++++. .+|++||+|+.+ ..||.+++.||++|+++ .||+||+|+||||+++|++.+||...
T Consensus 126 ~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~ 202 (324)
T cd01563 126 FDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLID 202 (324)
T ss_pred HHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccc
Confidence 788888999988874 789999999998 67999999999999963 69999999999999999999999875
Q ss_pred CCcEEEEEecCCCCccc----CCCC-------CCccccccCCCCCc---c--cccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 154 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVP---G--VLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~---~--~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
++++||+|||.+++.+. .+.. ..+.+++++.+..+ . .+.+++.++++.|+|+|++++++.|+++
T Consensus 203 ~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 282 (324)
T cd01563 203 RLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLART 282 (324)
T ss_pred cCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhc
Confidence 57999999999987552 2211 12334566543211 1 1224567899999999999999999999
Q ss_pred cCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCC
Q 023695 218 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 258 (278)
Q Consensus 218 ~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 258 (278)
+|+++||+||+++++++++.+++. .++++||+++|++|.|.
T Consensus 283 ~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 283 EGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred CCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 999999999999999999987753 35789999999999863
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. |
| >PRK08246 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=340.58 Aligned_cols=244 Identities=23% Similarity=0.326 Sum_probs=206.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+ + + ++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 52 ~K~R~a~~~~~~~~~-~----~-~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 123 (310)
T PRK08246 52 FKARGAFNRLLAAPV-P----A-AGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--E 123 (310)
T ss_pred CHHHHHHHHHHhhcc-c----C-CeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--C
Confidence 899999999988765 2 2 579999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||+|+++||++|+ +.||+||+|+|+||+++|++.+|+. .++||+
T Consensus 124 ~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ 197 (310)
T PRK08246 124 YADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVA 197 (310)
T ss_pred HHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEE
Confidence 788888898888875 8899999999998 789999999999999 5799999999999999999999974 489999
Q ss_pred EecCCCCccc----CCCCCCccc-----cccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPGPHKI-----QGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~~~~~-----~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++..+.. ++++.+.. ++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 198 ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa 277 (310)
T PRK08246 198 VEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAAT 277 (310)
T ss_pred EeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHH
Confidence 9999998664 344433322 33443332 33355788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+++++++...+. .++++||+|+ +||+.+++
T Consensus 278 ~lAa~~~~~~~~-~~~~~vv~i~-~g~n~d~~ 307 (310)
T PRK08246 278 ALAALLSGAYVP-APGERVAVVL-CGANTDPA 307 (310)
T ss_pred HHHHHHhCCccc-cCCCeEEEEE-CCCCCChh
Confidence 999987543321 3567888888 77886554
|
|
| >PRK06381 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=339.17 Aligned_cols=246 Identities=21% Similarity=0.256 Sum_probs=206.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|+||||..++..|+++++.|||+|+.+++ +
T Consensus 46 ~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~ 118 (319)
T PRK06381 46 QKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--K 118 (319)
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--C
Confidence 899999999999999987 789999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhh------C
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK------N 153 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~------~ 153 (278)
++++.+.+++++++. ++|++++++ ||...+.||.++++||++|++..||+||+|+|+||+++|++++||+. +
T Consensus 119 ~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~ 197 (319)
T PRK06381 119 YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTS 197 (319)
T ss_pred HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcC
Confidence 788888999888874 788888886 76323789999999999999657999999999999999999999998 7
Q ss_pred CCcEEEEEecCCCCccc----CCCCC--C---ccc-c-ccCCCCC---------cccccccccCeEEEeCHHHHHHHHHH
Q 023695 154 PNIKLYGIEPTESPVLS----GGKPG--P---HKI-Q-GIGAGFV---------PGVLEVNIIDEVVQVSSDEAIETAKL 213 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~----~~~~~--~---~~~-~-gl~~~~~---------~~~~~~~~~~~~~~v~d~e~~~a~~~ 213 (278)
+.++||+|||.+++++. .+... . ..+ + .++.+.. ...+..++.++++.|+|+|+++++++
T Consensus 198 ~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~ 277 (319)
T PRK06381 198 RMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAEL 277 (319)
T ss_pred CCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHH
Confidence 89999999999986553 22111 0 011 1 1111110 01123466779999999999999999
Q ss_pred HHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 214 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 214 l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
|++++||++||++|+++++++++++++.. +++||+++ |||.
T Consensus 278 la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 278 LRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred HHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 99999999999999999999999887653 37888888 7775
|
|
| >cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=337.81 Aligned_cols=244 Identities=26% Similarity=0.361 Sum_probs=212.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. + ++||++|+||||+|+|++|+++|++|++|||++.+..|+++|+.+||+|+.+++ +
T Consensus 47 ~Kdr~a~~~l~~~~~~~~---~-~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~ 120 (304)
T cd01562 47 FKIRGAYNKLLSLSEEER---A-KGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--D 120 (304)
T ss_pred cHHHhHHHHHHhcCHhhc---C-CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--C
Confidence 799999999999988772 1 469999999999999999999999999999999999999999999999999997 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++|++|+.+ ..||.++++||++|+. .||+||+|+|||||++|++++||..++.+|||+
T Consensus 121 ~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvig 197 (304)
T cd01562 121 FDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIG 197 (304)
T ss_pred HHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 888999999999885 7899999999987 7899999999999995 599999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|+|.+++.+. .+... .+...+++.+.. ++.+..+++|.++.|+|+|+++++++|++++|+++||+||+
T Consensus 198 v~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~ 277 (304)
T cd01562 198 VEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGAL 277 (304)
T ss_pred EEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 9999987653 22221 223345543321 23345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
++++++++.++. ++++||+|+ +||+
T Consensus 278 a~a~~~~~~~~~--~~~~vv~i~-tGG~ 302 (304)
T cd01562 278 ALAALLSGKLDL--KGKKVVVVL-SGGN 302 (304)
T ss_pred HHHHHHhCcccc--CCCeEEEEe-cCCC
Confidence 999999987764 677888888 7776
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. |
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=311.23 Aligned_cols=249 Identities=23% Similarity=0.307 Sum_probs=215.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||.|+|.+.+..+.++.+- +.+++.||||||.|+|++|+.+|+|++||||.+++..|+..++.||++|+++++ .
T Consensus 55 FKfRGAlNav~~l~~ek~~----kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~ 128 (323)
T KOG1251|consen 55 FKFRGALNAVSSLKAEKRA----KGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--T 128 (323)
T ss_pred eehhhhHHHHHHhhHhhhc----CceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--c
Confidence 8999999999988744331 569999999999999999999999999999999999999999999999999997 3
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.+++.+.+.++.++. +++.++||++|.. +.|++|+++|+++|+ +.+|++|+|+|+||+++|++...|.+.|+++|++
T Consensus 129 ~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~ 205 (323)
T KOG1251|consen 129 VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYA 205 (323)
T ss_pred cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEE
Confidence 467888899999987 8899999999998 899999999999999 5899999999999999999999999999999999
Q ss_pred EecCCCCcc----cCCCC-----CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVL----SGGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~----~~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||+..+.- ..|+. ..+..+|.-.. ..+|.+.++++|++++|+|+|+.++++.++++..+.+||+++.
T Consensus 206 veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~l 285 (323)
T KOG1251|consen 206 VEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAAL 285 (323)
T ss_pred ecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhH
Confidence 999887632 22322 12333444332 3567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+||+++-.-.+ ...+++.+|+ +|||.++..
T Consensus 286 gfAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 286 GFAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred HHHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 99998865443 3578888888 999976663
|
|
| >PRK06260 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=342.78 Aligned_cols=250 Identities=23% Similarity=0.232 Sum_probs=212.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.++|.+++++|. ++|+++|+||||+|+|++|+++|++|+||||++ ++..|+.+++.|||+|+.+++
T Consensus 98 fKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~-- 170 (397)
T PRK06260 98 FKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG-- 170 (397)
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--
Confidence 899999999999999987 689999999999999999999999999999997 789999999999999999986
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN----- 153 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~----- 153 (278)
+++++.+.+++++++. ++|+++++ ||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++|++..
T Consensus 171 ~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i 247 (397)
T PRK06260 171 NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGII 247 (397)
T ss_pred cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCc
Confidence 6888999999988875 78888887 8888 78999999999999966 69999999999999999999999875
Q ss_pred -CCcEEEEEecCCCCccc----CCCCC-------CccccccCCCCCccc------ccccccCeEEEeCHHHHHHHHHHHH
Q 023695 154 -PNIKLYGIEPTESPVLS----GGKPG-------PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 154 -~~~~vigV~~~~~~~~~----~~~~~-------~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
..+|||+|||++++++. .+... .+..+++..+. |.. ..++..+.++.|+|+|++++++.|+
T Consensus 248 ~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la 326 (397)
T PRK06260 248 DKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLA 326 (397)
T ss_pred CCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHH
Confidence 34799999999997653 22221 12233332211 111 2245567899999999999999999
Q ss_pred HhcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 216 LKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 216 ~~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++|+++||+||+++++++++.+++. .++++||+++|++|.|+.+.
T Consensus 327 ~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~ 373 (397)
T PRK06260 327 RKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDA 373 (397)
T ss_pred HhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHH
Confidence 99999999999999999999988764 46789999999999988764
|
|
| >PLN02569 threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=345.98 Aligned_cols=254 Identities=19% Similarity=0.166 Sum_probs=215.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++..++..+.+.|........|+++|+||||.|+|++|+.+|++|+||||++ .+..|+.+++.|||+|+.+++
T Consensus 165 FKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g-- 242 (484)
T PLN02569 165 FKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT-- 242 (484)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--
Confidence 89999999999999877632222569999999999999999999999999999996 788999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCC-CCEEEEecCCCccHHHHHHHHHhhC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN----- 153 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~-~d~iv~~vG~Gg~~aGi~~~~k~~~----- 153 (278)
+++++++.+++++++. ++|+++++ ||.+ ++||+|+++||++|++++ ||+||+|+|+||+++|++++||++.
T Consensus 243 ~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i 319 (484)
T PLN02569 243 DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLV 319 (484)
T ss_pred CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCC
Confidence 7899999999988876 68889988 8888 789999999999999765 9999999999999999999999863
Q ss_pred -CCcEEEEEecCCCCccc----CCCC-------CCccccccCCCCCccccc------ccccCeEEEeCHHHHHHHHHHHH
Q 023695 154 -PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 154 -~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
+.+|||+|||++++++. .+.. .++.++++..+ .|..+. .+.-+.++.|+|+|++++++. +
T Consensus 320 ~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~-~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a 397 (484)
T PLN02569 320 DRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIG-DPVSIDRAVYALKESNGIVEEATEEELMDAQAE-A 397 (484)
T ss_pred CCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccC-CCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-H
Confidence 46799999999997664 2221 23455666544 233221 223345799999999999999 8
Q ss_pred HhcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 216 LKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 216 ~~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++||++||+||++++++.++.+++. .++++||+++|++|.||.+.
T Consensus 398 ~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 398 DKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred HHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 99999999999999999999988764 46789999999999999874
|
|
| >PRK06450 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=334.35 Aligned_cols=237 Identities=21% Similarity=0.198 Sum_probs=197.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++|+++|+||||.|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ +
T Consensus 80 fKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~ 152 (338)
T PRK06450 80 YKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--S 152 (338)
T ss_pred CHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999886 689999999999999999999999999999999999999999999999999996 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
++++.+. +++. +.+|++++.||.+ ++||+|+++||++|+++ .||+||+|+|+||+++|++++|+++.+
T Consensus 153 ~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~ 226 (338)
T PRK06450 153 REDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVIS 226 (338)
T ss_pred HHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCcc
Confidence 6655443 4443 6788999999998 78999999999999964 599999999999999999999998764
Q ss_pred -CcEEEEEecCCCCccc----CCCCC-----CccccccCCCCCcccc------cccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 155 -NIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
.+|||+|||++++++. +..+. .+..++|..+. |... .++. +..+.|+|+|+++++++|++ +
T Consensus 227 ~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~ 303 (338)
T PRK06450 227 EMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-K 303 (338)
T ss_pred CCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-c
Confidence 4899999999987664 22111 12234443221 2111 1344 78999999999999999987 6
Q ss_pred CceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCc
Q 023695 219 GLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 219 Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 259 (278)
|+++||+||+++|+++++ ++++||+++|++|.|.+
T Consensus 304 Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 304 GLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 999999999999999875 34689999989998854
|
|
| >KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=311.86 Aligned_cols=270 Identities=36% Similarity=0.563 Sum_probs=232.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK- 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~- 79 (278)
.|||.|.+++..|+++|+|-||+ +|++.|+||+|+++|..|+.+|++|+|+||.+.+.+|.+.++.+||+|..|++..
T Consensus 79 ~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i 157 (391)
T KOG1481|consen 79 VKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPI 157 (391)
T ss_pred hhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCc
Confidence 49999999999999999999995 6999999999999999999999999999999999999999999999999998632
Q ss_pred -C---h-HHHHHHHHHHHHhCC--CccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhh
Q 023695 80 -G---M-KGAVQKAEEILAKTP--NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK 152 (278)
Q Consensus 80 -~---~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~ 152 (278)
+ | ..+.+.|.+...+.. ..+|.+||+|+.||..||.++|+|||.|..+.+|++++.+|||||++|+.+++|+.
T Consensus 158 ~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek 237 (391)
T KOG1481|consen 158 VDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEK 237 (391)
T ss_pred cChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhc
Confidence 1 2 233344444433321 24678999999999999999999999999999999999999999999999999998
Q ss_pred CCC-cEEEEEecCCCCccc-------------CCC----CCCccccccCCCCCccccc--ccccCeEEEeCHHHHHHHHH
Q 023695 153 NPN-IKLYGIEPTESPVLS-------------GGK----PGPHKIQGIGAGFVPGVLE--VNIIDEVVQVSSDEAIETAK 212 (278)
Q Consensus 153 ~~~-~~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~~~~~~~~~~--~~~~~~~~~v~d~e~~~a~~ 212 (278)
.+. ++++-.+|-++.... .|. +..+..+|+|...++.++. .+++|+.+.|+|++++++.+
T Consensus 238 ~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr 317 (391)
T KOG1481|consen 238 SDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSR 317 (391)
T ss_pred CCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHH
Confidence 876 899999999994321 121 2345568888877766654 67799999999999999999
Q ss_pred HHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 213 LLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 213 ~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
.|..++|++++.||+.+..++.++++.. .++.++|+|+||+|.||++.++...+++.++
T Consensus 318 ~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~~~~ 376 (391)
T KOG1481|consen 318 YLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLESKK 376 (391)
T ss_pred HhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHhhcC
Confidence 9999999999999999999999999887 4899999999999999999977777766654
|
|
| >PRK08206 diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=339.70 Aligned_cols=262 Identities=21% Similarity=0.252 Sum_probs=212.0
Q ss_pred CccHHHHHHHHHHHHc--CC--------------CCC--CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Q 023695 1 MLQKIGYSMISDAEAK--GL--------------ITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~--g~--------------l~~--g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~ 62 (278)
||+|++.+.+..+..+ +. +++ ++.+|+++|+||||+|+|++|+.+|++|+||||+++++.|+
T Consensus 76 FK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~ 155 (399)
T PRK08206 76 FKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERV 155 (399)
T ss_pred hHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 8999999998887632 21 000 11359999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-----CCCC-CCchhhhhhchHHHHHhhhCC---CCCEEE
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALV 133 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~t~~~EI~~ql~~---~~d~iv 133 (278)
..|+.|||+|+.+++ +++++.+.+++++++. +++|++ ||+| |.+.++||.|+++||++|+++ .||+||
T Consensus 156 ~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vv 232 (399)
T PRK08206 156 DAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVF 232 (399)
T ss_pred HHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999996 6888999999988875 778876 6765 566689999999999999965 599999
Q ss_pred EecCCCccHHHHHHHHHhhC--CCcEEEEEecCCCCccc----CCCCC------CccccccCCCC---CcccccccccCe
Q 023695 134 SGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTESPVLS----GGKPG------PHKIQGIGAGF---VPGVLEVNIIDE 198 (278)
Q Consensus 134 ~~vG~Gg~~aGi~~~~k~~~--~~~~vigV~~~~~~~~~----~~~~~------~~~~~gl~~~~---~~~~~~~~~~~~ 198 (278)
+|+|+||+++|++++||+.+ +.++||+|||++++++. .+++. .+..+++..+. .++.+.++.+|+
T Consensus 233 vpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~ 312 (399)
T PRK08206 233 LQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADA 312 (399)
T ss_pred EcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCE
Confidence 99999999999999999884 47999999999998763 23321 23445664432 233445678999
Q ss_pred EEEeCHHHHHHHHHHHHH----hcCceeeccHHHHHHHHHHHHhc---------CC-CCCCeEEEEecCCCcCCcchhhc
Q 023695 199 VVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIEIAKR---------PE-NAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 199 ~~~v~d~e~~~a~~~l~~----~~Gi~~~p~sg~a~aa~~~~~~~---------~~-~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
++.|+|+|++++++.|++ ++|+++||+||+++++++++.+. +. .++++||+|+ |+|+++.+ .|
T Consensus 313 ~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~il-tgG~~d~~--~~ 389 (399)
T PRK08206 313 FISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIS-TEGDTDPD--RY 389 (399)
T ss_pred EEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEE-CCCCCCHH--HH
Confidence 999999999999999996 78999999999999999976532 22 3578899999 58997666 44
Q ss_pred HHHH
Q 023695 265 ESVR 268 (278)
Q Consensus 265 ~~~~ 268 (278)
.+++
T Consensus 390 ~~~~ 393 (399)
T PRK08206 390 REIV 393 (399)
T ss_pred HHHh
Confidence 4443
|
|
| >cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=312.90 Aligned_cols=213 Identities=43% Similarity=0.623 Sum_probs=197.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++..+.++|.+ |+ .+|+++|+||||.|+|++|+++|++|++|+|.+.++.|+++++.+|++|+.+++ +
T Consensus 30 ~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~--~ 105 (244)
T cd00640 30 FKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--D 105 (244)
T ss_pred cHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 7999999999999999976 44 579999999999999999999999999999999999999999999999999997 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
++++.+.+++++++.++++|+++|.|+.+ ..||.++++||.+|++. .||+||+|+|+||+++|++.+|+..+|.+|||
T Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii 184 (244)
T cd00640 106 FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVI 184 (244)
T ss_pred HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEE
Confidence 78899999999988568999999999988 77889999999999965 59999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|+| +++.|+|+|+++++++|++++|+++||++|++++++.+++++
T Consensus 185 ~v~~----------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~ 230 (244)
T cd00640 185 GVEP----------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKK 230 (244)
T ss_pred EEee----------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHh
Confidence 9997 689999999999999999999999999999999999999877
Q ss_pred CCCCCCeEEEEecC
Q 023695 240 PENAGKLIVVIFPS 253 (278)
Q Consensus 240 ~~~~~~~vv~i~~~ 253 (278)
. .++++||+++|+
T Consensus 231 ~-~~~~~vv~v~tg 243 (244)
T cd00640 231 L-GKGKTVVVILTG 243 (244)
T ss_pred c-CCCCEEEEEeCC
Confidence 6 367788888844
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=338.71 Aligned_cols=247 Identities=20% Similarity=0.230 Sum_probs=209.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|++.|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +
T Consensus 95 fKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~ 167 (442)
T PRK05638 95 FRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--S 167 (442)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--C
Confidence 899999999999999876 789999999999999999999999999999999999999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 154 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~------ 154 (278)
++++.+.+++++++. ++|++++++||.+ ++||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+
T Consensus 168 ~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~ 243 (442)
T PRK05638 168 VDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEE 243 (442)
T ss_pred HHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccC
Confidence 889999999988775 7999999999998 7899999999999994 99999999999999999999999765
Q ss_pred CcEEEEEecCCCCccc----CCCC--CCccccccCCCC--Ccc---cccccccCeEEEeCHHHHHHHHHHHHHhcCceee
Q 023695 155 NIKLYGIEPTESPVLS----GGKP--GPHKIQGIGAGF--VPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG 223 (278)
Q Consensus 155 ~~~vigV~~~~~~~~~----~~~~--~~~~~~gl~~~~--~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~ 223 (278)
.+|||+|||++++++. .+.. ..+...++..+. ... ...++..+..+.|+|+++.++++.+++ +||++|
T Consensus 244 ~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~e 322 (442)
T PRK05638 244 IPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAE 322 (442)
T ss_pred CCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceec
Confidence 4799999999887653 2211 122233442211 111 112344567899999999998888765 799999
Q ss_pred ccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCc
Q 023695 224 ISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 224 p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 259 (278)
|+||+++|+++++.+++. .++++||+++|++|.|+.
T Consensus 323 pssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 323 LSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 999999999999988864 467899999999999884
|
|
| >TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=326.94 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=209.9
Q ss_pred CccHHHHHHHHHHHHc----------------CCCCC--CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Q 023695 1 MLQKIGYSMISDAEAK----------------GLITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~----------------g~l~~--g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~ 62 (278)
||+|++.+.+..+.++ +.+++ +.++|+++|+||||+|+|++|+.+|++|+||||+++++.|+
T Consensus 54 FK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~ 133 (376)
T TIGR01747 54 FKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERV 133 (376)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 8999999999987653 22221 23689999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-----CCCC--CCchhhhhhchHHHHHhhhCC----CCCE
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN--PANPKIHYETTGPELWKGSGG----RIDA 131 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~EI~~ql~~----~~d~ 131 (278)
..|+.|||+|+.+++ +++++.+.+++++++. ++++++ +|+| |.. ++||+|+++||++|+++ .||+
T Consensus 134 ~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~ 209 (376)
T TIGR01747 134 ENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTH 209 (376)
T ss_pred HHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCE
Confidence 999999999999996 6888999999988875 678876 4655 433 78999999999999952 6999
Q ss_pred EEEecCCCccHHHHHHHHHhhCC--CcEEEEEecCCCCccc----C--CCCC------CccccccCCCC---Cccccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEKNP--NIKLYGIEPTESPVLS----G--GKPG------PHKIQGIGAGF---VPGVLEVN 194 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~~~--~~~vigV~~~~~~~~~----~--~~~~------~~~~~gl~~~~---~~~~~~~~ 194 (278)
||+|+|+||+++|++.++++..+ .++||+|||++++++. . +++. .+.+++|..+. .++.+.++
T Consensus 210 vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~ 289 (376)
T TIGR01747 210 VLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRN 289 (376)
T ss_pred EEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHh
Confidence 99999999999999999987643 3699999999998773 2 3321 24556776543 24455578
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhc----CceeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCcCCcc
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~----Gi~~~p~sg~a~aa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~ 260 (278)
..+.++.|+|+|+.++|+.|++.. ++++||+++++++++.. +.+++. .++++||+|+ |||+...+
T Consensus 290 ~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~ 368 (376)
T TIGR01747 290 CTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPD 368 (376)
T ss_pred cCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHH
Confidence 899999999999999999999855 59999999999988883 333333 3467888888 99995544
Q ss_pred hhhcHHH
Q 023695 261 SVLFESV 267 (278)
Q Consensus 261 ~~~~~~~ 267 (278)
.|.++
T Consensus 369 --~~~~~ 373 (376)
T TIGR01747 369 --HYREI 373 (376)
T ss_pred --HHHHH
Confidence 44443
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). |
| >TIGR00260 thrC threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=322.57 Aligned_cols=250 Identities=22% Similarity=0.232 Sum_probs=207.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. .+|+++|+||||+|+|++|+.+|++|+|+||++ +++.|+..++.+||+|+.+++
T Consensus 54 fKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~-- 126 (328)
T TIGR00260 54 FKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG-- 126 (328)
T ss_pred hHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--
Confidence 899999999999999886 679999999999999999999999999999998 899999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCC-CCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhCC---
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP--- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~~--- 154 (278)
+++++.+.+++++++. +.++++++++ |.+ +.||.++++||++|+++ .||+||+|+|+||+++|++.+|++...
T Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~ 204 (328)
T TIGR00260 127 NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGL 204 (328)
T ss_pred CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCC
Confidence 6888999999988775 4555554422 766 78999999999999964 799999999999999999999997510
Q ss_pred --CcEEEEEecCCCCccc-----CCCCC-----CccccccCCCCCccc------ccccccCeEEEeCHHHHHHHHHHHHH
Q 023695 155 --NIKLYGIEPTESPVLS-----GGKPG-----PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLAL 216 (278)
Q Consensus 155 --~~~vigV~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~ 216 (278)
.+++++|||++++++. .++.. .+..++++.+ .|.. +.+.+.++.+.|+|+|+++++++|++
T Consensus 205 ~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~-~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 283 (328)
T TIGR00260 205 DSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIG-NPANWERALELFRRSNGNAEDVSDEEILEAIKLLAR 283 (328)
T ss_pred ccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecC-CCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHH
Confidence 2499999999995442 23222 2233444332 1211 23467889999999999999999999
Q ss_pred hcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcc
Q 023695 217 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 217 ~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 260 (278)
++|+++||++|+++++++++.+++. .+++++|+++|.+|.|+.+
T Consensus 284 ~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 284 EEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred hcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 9999999999999999999887654 3678899999888888753
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. |
| >cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=324.61 Aligned_cols=254 Identities=24% Similarity=0.258 Sum_probs=198.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~~~---~~~~~~~~~~Ga~v~~~~ 76 (278)
||||.+...+..+.++|. +.+++ +|+||||+|+|++|+++|++|+||||+..+ +.|+.+++.+||+|+.++
T Consensus 65 ~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~ 139 (365)
T cd06446 65 HKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVP 139 (365)
T ss_pred hhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeC
Confidence 799999999999999887 34555 699999999999999999999999998643 367889999999999998
Q ss_pred CCC-ChHHHHHHHHHH-HHhCCC-ccccCCCC----CCCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHH
Q 023695 77 PAK-GMKGAVQKAEEI-LAKTPN-AYMLQQFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGA 145 (278)
Q Consensus 77 ~~~-~~~~~~~~a~~~-~~~~~~-~~~~~~~~----~~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi 145 (278)
... .++++...+.+. .++.++ +|+++++. ++.++++||+|+++||++|+. ..||+||+|+|+|||++|+
T Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi 219 (365)
T cd06446 140 SGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGL 219 (365)
T ss_pred CCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHH
Confidence 632 355665444333 443223 44444331 233558899999999999995 2699999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccCC--------CCC--------------------CccccccCCC-CCcc--ccccc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSGG--------KPG--------------------PHKIQGIGAG-FVPG--VLEVN 194 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~~--------~~~--------------------~~~~~gl~~~-~~~~--~~~~~ 194 (278)
+++++. .++++||+|||++++.+... ... .+..++++.+ ..+. .+..+
T Consensus 220 ~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~ 298 (365)
T cd06446 220 FYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDS 298 (365)
T ss_pred HHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHh
Confidence 998877 46899999999998776421 110 0112234321 1111 13456
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
++|+++.|+|+|++++++.|++++||++||+||++++++++++++. .++++||+|+|++|+||+++
T Consensus 299 ~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 299 GRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred CCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 7899999999999999999999999999999999999999998875 36789999998889999986
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. |
| >TIGR03844 cysteate_syn cysteate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=326.04 Aligned_cols=251 Identities=17% Similarity=0.077 Sum_probs=206.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|. +.|+++|+||||+|+|++|+++|++|+||||++++..+...++.+|++|+.+++ +
T Consensus 100 FKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~ 172 (398)
T TIGR03844 100 FKELEALPTMQRLKERGG-----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--D 172 (398)
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--C
Confidence 899999999999999885 679999999999999999999999999999998654444445789999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-------
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN------- 153 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~------- 153 (278)
++++.+.+++++++. +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++.
T Consensus 173 ~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~ 250 (398)
T TIGR03844 173 YTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGS 250 (398)
T ss_pred HHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccC
Confidence 899999999998875 6654566678876 8999999999999996449999999999988999999888742
Q ss_pred CCcEEEEEecCCCCccc----CCCCC---------------CccccccCCCCCcc-------cccccccCeEEEeCHHHH
Q 023695 154 PNIKLYGIEPTESPVLS----GGKPG---------------PHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEA 207 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~~~~~~v~d~e~ 207 (278)
..+++++||+++++++. .+... .+..+++..+..+. ...++..+.++.|+|+|+
T Consensus 251 ~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI 330 (398)
T TIGR03844 251 KLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEA 330 (398)
T ss_pred CCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHH
Confidence 34789999999998763 33221 12234443222221 123577889999999999
Q ss_pred HHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcCCcc
Q 023695 208 IETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 208 ~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 260 (278)
.++++.|++++|+++||+||+++|+++++.+++.. ++++||+++|++|.|++.
T Consensus 331 ~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 331 VSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLR 384 (398)
T ss_pred HHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHH
Confidence 99999999999999999999999999999887654 788999999899988765
|
Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M. |
| >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=323.65 Aligned_cols=260 Identities=18% Similarity=0.202 Sum_probs=203.1
Q ss_pred CccHHHHHHHHHHHH--cCC--------------CC--CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH
Q 023695 1 MLQKIGYSMISDAEA--KGL--------------IT--PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 62 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~--~g~--------------l~--~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~ 62 (278)
||+|++.+.+..+.+ .|. .+ ....+||++|+||||+|+|++|+++|++|+||||+++++.|+
T Consensus 73 FK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~ 152 (396)
T TIGR03528 73 FKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRL 152 (396)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHH
Confidence 899999999988633 221 00 011379999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccC-----CCCCC-CchhhhhhchHHHHHhhhC----CCCCEE
Q 023695 63 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFENP-ANPKIHYETTGPELWKGSG----GRIDAL 132 (278)
Q Consensus 63 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~-~~~~~g~~t~~~EI~~ql~----~~~d~i 132 (278)
..++.|||+|+.+++ +++++.+.+++++++. +++|++ +|+|. ...++||+|+++||++|++ +.||+|
T Consensus 153 ~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~v 229 (396)
T TIGR03528 153 ENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHV 229 (396)
T ss_pred HHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEE
Confidence 999999999999985 6888999999998875 778875 57652 2236899999999999995 269999
Q ss_pred EEecCCCccHHHHHHHHHhh-CCC-cEEEEEecCCCCcccC------CCCC------CccccccCCCC---Ccccccccc
Q 023695 133 VSGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG------GKPG------PHKIQGIGAGF---VPGVLEVNI 195 (278)
Q Consensus 133 v~~vG~Gg~~aGi~~~~k~~-~~~-~~vigV~~~~~~~~~~------~~~~------~~~~~gl~~~~---~~~~~~~~~ 195 (278)
|+|+|+||+++|++.++++. .+. ++||+|||++++++.. +++. .+..++++.+. .++.+.+++
T Consensus 230 vvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~ 309 (396)
T TIGR03528 230 FLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDY 309 (396)
T ss_pred EEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHh
Confidence 99999999999999999554 444 5999999999987641 2221 23445665422 233444678
Q ss_pred cCeEEEeCHHHHHHHHHHHHH----hcCceeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~----~~Gi~~~p~sg~a~aa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+|+++.|+|+|+.++++.|++ ++++++||++++++|++.. +.+++. .++++||+|+ |||+...+
T Consensus 310 ~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~- 387 (396)
T TIGR03528 310 ASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPD- 387 (396)
T ss_pred CCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHH-
Confidence 999999999999999999998 5799999999999955532 222222 2578888888 99995444
Q ss_pred hhcHH
Q 023695 262 VLFES 266 (278)
Q Consensus 262 ~~~~~ 266 (278)
.|.+
T Consensus 388 -~~~~ 391 (396)
T TIGR03528 388 -NYRK 391 (396)
T ss_pred -HHHH
Confidence 4444
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. |
| >cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=319.11 Aligned_cols=248 Identities=21% Similarity=0.232 Sum_probs=197.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga 70 (278)
+|||++.+++.+++++|. ++|+++ |+||||+|+|++|+.+|++|++|||++.+ ..|+.+++.+||
T Consensus 35 ~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga 109 (307)
T cd06449 35 NKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGA 109 (307)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCC
Confidence 499999999999999987 678988 68999999999999999999999999876 468999999999
Q ss_pred EEEEeCCCCC--hHHHHHHH-HHHHHhCCCccc-cCCCC-CCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccH
Q 023695 71 ELVLTDPAKG--MKGAVQKA-EEILAKTPNAYM-LQQFE-NPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTI 142 (278)
Q Consensus 71 ~v~~~~~~~~--~~~~~~~a-~~~~~~~~~~~~-~~~~~-~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~ 142 (278)
+|+.++.... ...+.+.+ +++.++.+..|+ .+++. ||.+ ..||.++++||++|+++ .||+||+|+|||||+
T Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~ 188 (307)
T cd06449 110 DVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTH 188 (307)
T ss_pred EEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHH
Confidence 9999986321 12223333 333333323344 45553 8888 78999999999999954 699999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCCCcccCCCCC---CccccccC--CCCCcccccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 143 TGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHKIQGIG--AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 143 aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~gl~--~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
+|++++||+.++.++||+|+|.+++.+...... ...+.+++ .+..+..++.+++|+++.|+|+|+++++++|+++
T Consensus 189 ~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~ 268 (307)
T cd06449 189 AGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARL 268 (307)
T ss_pred HHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765321110 01122222 2233555667889999999999999999999999
Q ss_pred cCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCC
Q 023695 218 EGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFG 255 (278)
Q Consensus 218 ~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG 255 (278)
+||++|| |+|++++++.++++++.. ++++||+|+ |||
T Consensus 269 ~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 269 EGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred hCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 9999999 899999999999887653 467888888 776
|
|
| >PRK13028 tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=316.97 Aligned_cols=256 Identities=24% Similarity=0.241 Sum_probs=201.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~---~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..++++|+ .+.|+++|+||||+|+|++|+++|++|+||||+...+ .|+.+|+.+||+|+.++.
T Consensus 93 ~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~ 168 (402)
T PRK13028 93 HKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTR 168 (402)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcC
Confidence 799999999999999986 2456678999999999999999999999999986433 578899999999999984
Q ss_pred -CCChHHHHHHHHH-HHHhCCCccccC-CCC----CCCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKAEE-ILAKTPNAYMLQ-QFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a~~-~~~~~~~~~~~~-~~~----~~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
...++++.+.+.+ +.++.++.+|+. +.. .|.+...||++++.||.+|+. ..||+||+|+|+||+++|++
T Consensus 169 g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~ 248 (402)
T PRK13028 169 GGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLF 248 (402)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHH
Confidence 3467888877744 555534555653 221 233445699999999999972 36999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCC--------CCcccCCCCC--------------------CccccccCCCCC-cc--cccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTE--------SPVLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~ 195 (278)
.+|++ .++++||||||.+ +.++..+.+. .+...+|..+.. |. .+....
T Consensus 249 ~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~ 327 (402)
T PRK13028 249 SAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIG 327 (402)
T ss_pred HHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhc
Confidence 99986 4889999999998 6666544431 111233332211 21 123455
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|++++++.|++.|||+++|+|+++++++++++++. .++++||+++|++|+||+++.
T Consensus 328 ~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 328 RVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 678999999999999999999999999999999999999988763 367899999988899998854
|
|
| >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=319.14 Aligned_cols=258 Identities=22% Similarity=0.275 Sum_probs=198.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~ 76 (278)
||+|++.+++.++.++|. +.+++ +|+||||+|+|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++
T Consensus 100 ~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~ 174 (419)
T TIGR01415 100 HKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSP 174 (419)
T ss_pred cHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEEC
Confidence 799999999999999997 45665 68899999999999999999999999854 5688999999999999998
Q ss_pred CCCChHH------------------HHHHHHHHHHhCC-CccccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEE
Q 023695 77 PAKGMKG------------------AVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVS 134 (278)
Q Consensus 77 ~~~~~~~------------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~ 134 (278)
.. +++ ++..+.+.+++.+ ..|+++++.|+ ...||.++|+||++|++. .||+||+
T Consensus 175 ~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~ 250 (419)
T TIGR01415 175 SE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIG 250 (419)
T ss_pred Cc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 63 222 3456666666544 34556665553 367999999999999953 4999999
Q ss_pred ecCCCccHHHHHHHHHhh----CCCcEEEEEecCCCCcccCCCC----------CC-ccccccCCCCCcccc--------
Q 023695 135 GIGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVL-------- 191 (278)
Q Consensus 135 ~vG~Gg~~aGi~~~~k~~----~~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~-------- 191 (278)
|+|+||+++|++.+|+.. .+++|||+|||++++.+..+.. .+ ..+.+++.++.|..+
T Consensus 251 ~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~ 330 (419)
T TIGR01415 251 CVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYH 330 (419)
T ss_pred EeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccC
Confidence 999999999999988432 2589999999999988765431 11 233456655544322
Q ss_pred ---------cccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCC--eEEEEecCCCcCCcc
Q 023695 192 ---------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK--LIVVIFPSFGERYLS 260 (278)
Q Consensus 192 ---------~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~--~vv~i~~~gG~~~~~ 260 (278)
..+.+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++....++ +||+++ +|+.|+|
T Consensus 331 ~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~l--sG~G~~d 408 (419)
T TIGR01415 331 GVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNL--SGHGLLD 408 (419)
T ss_pred CccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEc--CCCCcCC
Confidence 123445789999999999999999999999999999999999999887654344 333444 4444466
Q ss_pred hhhcHHHHH
Q 023695 261 SVLFESVRK 269 (278)
Q Consensus 261 ~~~~~~~~~ 269 (278)
...|+++..
T Consensus 409 ~~~y~~~~~ 417 (419)
T TIGR01415 409 LKAYAKYLH 417 (419)
T ss_pred HHHHHHHhc
Confidence 667776653
|
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. |
| >PRK12391 tryptophan synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=318.93 Aligned_cols=260 Identities=22% Similarity=0.263 Sum_probs=200.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~ 76 (278)
||+|++..++.++.++|. +.+++ +|+||||+|+|++|+++|++|+||||+. .++.|+.+|+.|||+|+.++
T Consensus 109 ~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~ 183 (427)
T PRK12391 109 HKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSP 183 (427)
T ss_pred hHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEEC
Confidence 799999999999999997 45665 5789999999999999999999999974 35678999999999999998
Q ss_pred CCCC----------------hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecC
Q 023695 77 PAKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIG 137 (278)
Q Consensus 77 ~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG 137 (278)
+..+ ...++..+.+.+.+.++.+|+..+.++ +...||.++|+||++|+. ..||+||+|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG 262 (427)
T PRK12391 184 SDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVG 262 (427)
T ss_pred CchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 5311 112466667776665454555444322 347899999999999995 36999999999
Q ss_pred CCccHHHHHHHHHh---hC-CCcEEEEEecCCCCcccCCCC----------CC-ccccccCCCCCccccc----------
Q 023695 138 TGGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVLE---------- 192 (278)
Q Consensus 138 ~Gg~~aGi~~~~k~---~~-~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~~---------- 192 (278)
+||+++|++.+|.. .+ +++|||+|||++++++..+.. .+ ..+.+++.++.|..+.
T Consensus 263 ~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~ 342 (427)
T PRK12391 263 GGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMA 342 (427)
T ss_pred chHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCch
Confidence 99999999997732 34 889999999999988865321 11 2345666665544331
Q ss_pred -------ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCC--CCCeEEEEecCCCcCCcchhh
Q 023695 193 -------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN--AGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 193 -------~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~--~~~~vv~i~~~gG~~~~~~~~ 263 (278)
...+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++... ++++||+++ .|+.|+|...
T Consensus 343 ~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~l--sG~G~~d~~~ 420 (427)
T PRK12391 343 PLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNL--SGHGLLDLAA 420 (427)
T ss_pred HHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEe--CCCCCCCHHH
Confidence 23344789999999999999999999999999999999999998876532 345555555 4444567778
Q ss_pred cHHHH
Q 023695 264 FESVR 268 (278)
Q Consensus 264 ~~~~~ 268 (278)
|++++
T Consensus 421 y~~~l 425 (427)
T PRK12391 421 YDAYL 425 (427)
T ss_pred HHHHh
Confidence 88765
|
|
| >TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=318.35 Aligned_cols=248 Identities=18% Similarity=0.128 Sum_probs=196.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||||++.+++.+++++|. ++||++ |+||||+|+|++|+++|+++++|||++. +..+..+++.|||+|+.+++
T Consensus 39 ~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~ 113 (311)
T TIGR01275 39 NKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSA 113 (311)
T ss_pred hhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECc
Confidence 799999999999999987 679998 5699999999999999999999999875 45667778999999999985
Q ss_pred CCChHHHHHHHHHHHH----hCC-CccccCCCCCCCchhhhhhchHHHHHhhhCC--CCCEEEEecCCCccHHHHHHHHH
Q 023695 78 AKGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLK 150 (278)
Q Consensus 78 ~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--~~d~iv~~vG~Gg~~aGi~~~~k 150 (278)
. ++.+..+.++++++ +.+ .+++++++.||.+ ..|+.++++||++|+++ .||+||+|+|||||++|++++||
T Consensus 114 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk 191 (311)
T TIGR01275 114 E-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLS 191 (311)
T ss_pred h-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 2 34444444444433 322 2345677788877 56777899999999953 69999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCcccCCC---CCCccccccCCC-CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec-c
Q 023695 151 EKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-S 225 (278)
Q Consensus 151 ~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p-~ 225 (278)
+.+|+++||||+|+.+.+..... ..++..++++.+ .....+..++.+..+.|+|+|+++++++|++++|+++|| |
T Consensus 192 ~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~ 271 (311)
T TIGR01275 192 ILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVY 271 (311)
T ss_pred HhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcch
Confidence 99999999999987653211100 012234455543 223334467788899999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 226 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
+|++++++++++++...++++||+|+ |||+
T Consensus 272 sg~~~aa~~~~~~~~~~~~~~vv~i~-tGG~ 301 (311)
T TIGR01275 272 TGKAFYGLIDLIRKGELGEKGILFIH-TGGI 301 (311)
T ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEE-CCCc
Confidence 99999999998877655677888888 8887
|
This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). |
| >TIGR00263 trpB tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=317.56 Aligned_cols=255 Identities=21% Similarity=0.250 Sum_probs=196.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~--~~~~~~~~~Ga~v~~~~~ 77 (278)
||||.+...+..++++|. + ..|+++|+||||+|+|++|+++|++|+||||+. .+. .|+.+|+.+||+|+.++.
T Consensus 81 ~K~R~a~~~~~~a~~~g~---~-~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~ 156 (385)
T TIGR00263 81 HKINNALGQALLAKRMGK---K-RIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTS 156 (385)
T ss_pred chHHHHHHHHHHHHHcCC---C-EEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECC
Confidence 799999999999998885 1 445578999999999999999999999999985 343 578899999999999985
Q ss_pred C-CChHHHH-HHHHHHHHhCCCcccc-CCCCC----CCchhhhhhchHHHHHhhhC---C-CCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG---G-RIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~EI~~ql~---~-~~d~iv~~vG~Gg~~aGi~ 146 (278)
. ..++++. +.+++++++.++.+|+ +++.+ +.++..||+|+++||++|+. + .||+||+|+|+||+++|++
T Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~ 236 (385)
T TIGR00263 157 GSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIF 236 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHH
Confidence 3 3466664 4455556664455555 44432 23445899999999999983 2 5899999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC--------------------CccccccCCCCC-c--ccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P--GVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~ 195 (278)
.++.. .|+++||+|||+++. .+..+.+. .+...+++.... | ..+....
T Consensus 237 ~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~ 315 (385)
T TIGR00263 237 YAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETG 315 (385)
T ss_pred HHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcC
Confidence 98854 699999999999863 23223221 011123322111 1 1223455
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.|+.+.|+|+|+++++++|+++|||+++|+||++++++++++++. .++++||+++|++|++|+++
T Consensus 316 ~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~ 380 (385)
T TIGR00263 316 RATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFT 380 (385)
T ss_pred CeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHH
Confidence 778999999999999999999999999999999999999987663 36789999998889999885
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model. |
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=311.58 Aligned_cols=256 Identities=24% Similarity=0.293 Sum_probs=196.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CC--HHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MS--LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~--~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+. .+ ..|+.+|+.+||+|+.++.
T Consensus 89 ~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~ 164 (397)
T PRK04346 89 HKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTS 164 (397)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 799999999999999997 2456668999999999999999999999999985 23 3578899999999999985
Q ss_pred -CCChHHHHHHHH-HHHHhCCCcccc-CCCCC----CCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKAE-EILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a~-~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
..++.++.+.+. .+.++.++.+|+ ++..+ |.+...||+++|.||.+|+. ..||+||+|+|+||+++|++
T Consensus 165 g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~ 244 (397)
T PRK04346 165 GSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIF 244 (397)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHH
Confidence 335666655554 456553444554 33322 23335699999999999983 36999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC-------------------Cc-cccccCCCCC-c--ccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG-------------------PH-KIQGIGAGFV-P--GVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~-------------------~~-~~~gl~~~~~-~--~~~~~~~ 195 (278)
.+|+. .++++||||||.++. ++..+++. .+ ...||..+.+ | ..+....
T Consensus 245 ~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~ 323 (397)
T PRK04346 245 HPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIG 323 (397)
T ss_pred HHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcC
Confidence 99975 789999999999863 22223221 01 1123322111 1 1223455
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|++++++.|++.|||+++++|+.+++++++++++. .++++||++++++|+||++++
T Consensus 324 ~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 324 RAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHH
Confidence 678999999999999999999999999999999999999987653 367899999978899999853
|
|
| >PRK03910 D-cysteine desulfhydrase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=314.34 Aligned_cols=250 Identities=22% Similarity=0.258 Sum_probs=199.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~as--sGN~g~a~A~~a~~~G~~~~vv~p~~~~~--------~~~~~~~~~Ga 70 (278)
||||++.+++.+++++|. ++||++| +||||+|+|++|+.+|++|++|||+..+. .|+..++.+||
T Consensus 47 ~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga 121 (331)
T PRK03910 47 NKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGA 121 (331)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCC
Confidence 799999999999999887 6788774 48999999999999999999999998775 45689999999
Q ss_pred EEEEeCCCCChHH-HHHHHHHHHHhCCCcc-ccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccHHHH
Q 023695 71 ELVLTDPAKGMKG-AVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGA 145 (278)
Q Consensus 71 ~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi 145 (278)
+|+.+++.++..+ +...++++.++.+..+ +..++.|+.+ ..||.++++||++|+++ .||+||+|+|||||++|+
T Consensus 122 ~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi 200 (331)
T PRK03910 122 EIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGL 200 (331)
T ss_pred EEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHH
Confidence 9999987433323 3455666666543333 4566788887 67889999999999953 699999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCC--CC--cccccccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--FV--PGVLEVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~~--~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
+++||+.+|+++||+|||++++.+....+ .....++++.+ .. ...+.++++|+.+.|+|+|+++++++|++++
T Consensus 201 ~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~ 280 (331)
T PRK03910 201 AAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTE 280 (331)
T ss_pred HHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998865432111 01122334322 11 2235578899999999999999999999999
Q ss_pred Cceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcC
Q 023695 219 GLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGER 257 (278)
Q Consensus 219 Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~ 257 (278)
||++|| |||+++++++++.+++.. ++++||+|+ |||+.
T Consensus 281 gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-tGG~~ 320 (331)
T PRK03910 281 GILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-TGGAP 320 (331)
T ss_pred CCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCChH
Confidence 999999 599999999998877654 567888887 99983
|
|
| >PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=312.38 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=197.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga 70 (278)
+|||++.+++.+++++|. .+|+++ |+||||+|+|++|+++|++|++|+|+.++ ..|+.+++.|||
T Consensus 50 ~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA 124 (337)
T PRK12390 50 NKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGA 124 (337)
T ss_pred hhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCC
Confidence 499999999999999998 678887 88999999999999999999999876544 237779999999
Q ss_pred EEEEeCCCC--ChHHHHHHHHHHHHhCCC-ccccCCCCCC-CchhhhhhchHHHHHhh---hCCCCCEEEEecCCCccHH
Q 023695 71 ELVLTDPAK--GMKGAVQKAEEILAKTPN-AYMLQQFENP-ANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTIT 143 (278)
Q Consensus 71 ~v~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-~~~~~g~~t~~~EI~~q---l~~~~d~iv~~vG~Gg~~a 143 (278)
+|+.++... .+.++.+.+.+..++..+ .|.++++.++ .....||.++++||++| ++++||+||+|+|||||++
T Consensus 125 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtla 204 (337)
T PRK12390 125 DVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQA 204 (337)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHH
Confidence 999998631 233666666666665334 4446555433 22357899999999998 4447999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCC--CCcc--cccccccCeEEEeCHHHHHHHHHHHHH
Q 023695 144 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--FVPG--VLEVNIIDEVVQVSSDEAIETAKLLAL 216 (278)
Q Consensus 144 Gi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~~~~--~~~~~~~~~~~~v~d~e~~~a~~~l~~ 216 (278)
|++.+||+.+|++|||+|+|++++.+...+. ..+.+++++.+ ..+. .+..+++|+.|.|+|+|++++++++++
T Consensus 205 Gi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~ 284 (337)
T PRK12390 205 GMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCAR 284 (337)
T ss_pred HHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999876643211 12223444433 2222 355688999999999999999999999
Q ss_pred hcCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCc
Q 023695 217 KEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGE 256 (278)
Q Consensus 217 ~~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~ 256 (278)
++||++|| |||+++++++++++++.. ++.+||++| |||.
T Consensus 285 ~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~h-tgg~ 325 (337)
T PRK12390 285 LEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAH-LGGV 325 (337)
T ss_pred hcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCCh
Confidence 99999999 599999999999988764 566777776 8886
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=323.89 Aligned_cols=257 Identities=21% Similarity=0.256 Sum_probs=201.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||||.+.+++..++++|+. ++|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.
T Consensus 362 ~KdR~Al~~i~~A~~~G~~----~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~ 437 (695)
T PRK13802 362 HKINNALGQALLVKRMGKT----RVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTL 437 (695)
T ss_pred cHHHHHHHHHHHHHHcCCC----CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECC
Confidence 7999999999999999972 578899999999999999999999999999985 367899999999999999984
Q ss_pred C-CChHHHHHHH-HHHHHhCC-CccccCCCCCC----CchhhhhhchHHHHHhhhCC-----CCCEEEEecCCCccHHHH
Q 023695 78 A-KGMKGAVQKA-EEILAKTP-NAYMLQQFENP----ANPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGA 145 (278)
Q Consensus 78 ~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~g~~t~~~EI~~ql~~-----~~d~iv~~vG~Gg~~aGi 145 (278)
. .++.++.+.+ +++.++.+ .+|+++++.|+ .+..+||+++|.||++|+.. .||+||+|+|+||+++|+
T Consensus 438 g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi 517 (695)
T PRK13802 438 GDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGV 517 (695)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHH
Confidence 3 3567775544 55666543 45678888654 33468999999999999942 699999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccC----------CCCC-----------C---------ccccccCCCCC-ccccccc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSG----------GKPG-----------P---------HKIQGIGAGFV-PGVLEVN 194 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~----------~~~~-----------~---------~~~~gl~~~~~-~~~~~~~ 194 (278)
+.+|+. .+.+|||||||.++....+ +.++ . ....||..+-+ |..-...
T Consensus 518 ~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~ 596 (695)
T PRK13802 518 MNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLK 596 (695)
T ss_pred HHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHH
Confidence 999976 6899999999999753321 1100 0 00011110000 1111122
Q ss_pred ccCeE--EEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCC---CCCeEEEEecCCCcCCcchh
Q 023695 195 IIDEV--VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 195 ~~~~~--~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~---~~~~vv~i~~~gG~~~~~~~ 262 (278)
..+++ +.|+|+|++++++.|++.|||+++|+|++|++++++++++... .+++||+++++.|+||+++.
T Consensus 597 ~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 597 DIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred hcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 34444 8999999999999999999999999999999999999886532 25689999999999999974
|
|
| >TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=309.86 Aligned_cols=250 Identities=19% Similarity=0.209 Sum_probs=198.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~~--------~~~~~~~~~~Ga 70 (278)
+|||++.+++.+++++|. ++|+++ |+||||+|+|++|+++|++|+||||+..+ ..|+.+++.|||
T Consensus 49 ~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA 123 (337)
T TIGR01274 49 NKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGA 123 (337)
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCC
Confidence 499999999999999998 678877 67999999999999999999999998643 579999999999
Q ss_pred EEEEeCCCC--ChHHHHHHHHHHHHhC-CCccccCCCCC--CCchhhhhhchHHHHHhhh---CCCCCEEEEecCCCccH
Q 023695 71 ELVLTDPAK--GMKGAVQKAEEILAKT-PNAYMLQQFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTI 142 (278)
Q Consensus 71 ~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~~~~~~g~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~ 142 (278)
+|+.++... ...+....+.+.+++. +..|+++.+.+ +.. ..|+.++++||++|+ +..||+||+|+|||||+
T Consensus 124 ~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~ 202 (337)
T TIGR01274 124 DVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQ 202 (337)
T ss_pred EEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhH
Confidence 999998531 1224555555554544 23366666533 444 578999999999995 34799999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCCC--Cc--ccccccccCeEEEeCHHHHHHHHHHHH
Q 023695 143 TGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 143 aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
+|++++++..++++|||+|||++++.+..... ..+.+++++.+. .+ ..+...++++.|.|+|+|++++++.|+
T Consensus 203 aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la 282 (337)
T TIGR01274 203 AGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCA 282 (337)
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999976532111 122334444322 11 345677889999999999999999999
Q ss_pred HhcCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcC
Q 023695 216 LKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGER 257 (278)
Q Consensus 216 ~~~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~ 257 (278)
+++|+++|| |||+++++++++++++.. ++++||+|+ |||..
T Consensus 283 ~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~h-tGG~~ 325 (337)
T TIGR01274 283 KMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAH-LGGAP 325 (337)
T ss_pred HhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEe-CCChh
Confidence 999999999 699999999999988764 567877666 99974
|
This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. |
| >PLN02618 tryptophan synthase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=308.45 Aligned_cols=256 Identities=21% Similarity=0.273 Sum_probs=197.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..|+++|+ ++.|+++|+||||.|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++.
T Consensus 102 ~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~ 177 (410)
T PLN02618 102 HKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHS 177 (410)
T ss_pred hHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeC
Confidence 799999999999998886 13444556899999999999999999999999853 35678899999999999964
Q ss_pred -CCChHHHHH-HHHHHHHhCCCcccc-CCCC--C--CCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQ-KAEEILAKTPNAYML-QQFE--N--PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--~--~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
..+++++.. .+++++++.++.+|+ .+.. + +.....+++++|.||.+|+ +..||+||+|+|+||+++|++
T Consensus 178 g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~ 257 (410)
T PLN02618 178 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLF 257 (410)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHH
Confidence 346777764 445677764455555 2221 2 2233579999999998776 346999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCC--------CcccCCCCC-------------------Cc-cccccCCCCC-cc--cccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTES--------PVLSGGKPG-------------------PH-KIQGIGAGFV-PG--VLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~--------~~~~~~~~~-------------------~~-~~~gl~~~~~-~~--~~~~~~ 195 (278)
.+|+. +++++||||||.++ .++..+++. .+ ...||..+.. |. .+....
T Consensus 258 ~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~ 336 (410)
T PLN02618 258 HEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTG 336 (410)
T ss_pred HHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhc
Confidence 99975 68999999999997 233333321 01 1123322111 11 123346
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|+++++++|++.|||+++++|+++++++++++++. .++++||+++++.|+||+++.
T Consensus 337 ~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 337 RAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred CcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 789999999999999999999999999999999999999998764 367899999999999999864
|
|
| >PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=300.99 Aligned_cols=242 Identities=36% Similarity=0.544 Sum_probs=195.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|. ++|+++|+||||.|+|++|+.+|++|++|+|+++++.|+++++.+|++|+.++. +
T Consensus 39 ~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~ 111 (306)
T PF00291_consen 39 FKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--D 111 (306)
T ss_dssp THHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--T
T ss_pred cccccchhhhhhcccccc-----ceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc--c
Confidence 899999999999999876 789999999999999999999999999999999999999999999999999986 3
Q ss_pred hHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCE--EEEecCCCccHHHHHHHHHh--
Q 023695 81 MKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE-- 151 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~--iv~~vG~Gg~~aGi~~~~k~-- 151 (278)
++++.+.+.+++++. +..+.++|+ ++.+...||.+++.||++|+. .||. ||+|+|+||+++|++.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~ 189 (306)
T PF00291_consen 112 VEGAFDDAQELAKERAELLSPFNGELNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELI 189 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccccCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhh
Confidence 344444444333321 001126677 555558999999999999996 6766 99999999999999999999
Q ss_pred hCCCcEEEEEecCCCCccc----CCCCC----CccccccCCCC-Ccc----cccccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 152 KNPNIKLYGIEPTESPVLS----GGKPG----PHKIQGIGAGF-VPG----VLEVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 152 ~~~~~~vigV~~~~~~~~~----~~~~~----~~~~~gl~~~~-~~~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
. |+++||+|+|.+++.+. .+.+. .+.+.+++.+. .+. .+.+++.++++.|+|+|+.+++++|++++
T Consensus 190 ~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 268 (306)
T PF00291_consen 190 L-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAERE 268 (306)
T ss_dssp H-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHH
T ss_pred c-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHc
Confidence 7 89999999999987663 23331 13456777654 222 23456777889999999999999999999
Q ss_pred CceeeccHHHHHHHHHHHHhcCCC---CCCeEEEEec
Q 023695 219 GLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFP 252 (278)
Q Consensus 219 Gi~~~p~sg~a~aa~~~~~~~~~~---~~~~vv~i~~ 252 (278)
|+++||+++++++++++++++... ++++||+|+|
T Consensus 269 gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 269 GILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp SB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred CcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 999999999999999999887642 7889999984
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D .... |
| >PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=298.27 Aligned_cols=246 Identities=20% Similarity=0.253 Sum_probs=188.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLI--EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv--~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~~~ 77 (278)
||+|++.+++.++.++|. ++|+ ++|+||||+|+|++|+++|++|++|||.+.+.. +...++.+||+++.++.
T Consensus 53 ~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~ 127 (329)
T PRK14045 53 NKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEA 127 (329)
T ss_pred chHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECC
Confidence 799999999999999988 5676 589999999999999999999999999875433 66678999999998874
Q ss_pred CCC---hHHHHHHHHHHHHhCCCccc-cCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHHHHHHHHH
Q 023695 78 AKG---MKGAVQKAEEILAKTPNAYM-LQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLK 150 (278)
Q Consensus 78 ~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~k 150 (278)
..+ .+.+.+.+++++++.+..|+ .+++.|+.+ ..|+.+...||++|+. ..+|+||+|+|||||++|+++++|
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~-~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk 206 (329)
T PRK14045 128 KDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG-TLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLA 206 (329)
T ss_pred CcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 222 33556666777666544555 456678877 4555555559999995 369999999999999999999999
Q ss_pred hhCCCcEEEEEecCCCCcccCCCC-----CCccccccCCCC-CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec
Q 023695 151 EKNPNIKLYGIEPTESPVLSGGKP-----GPHKIQGIGAGF-VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 224 (278)
Q Consensus 151 ~~~~~~~vigV~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p 224 (278)
..+|+++||+|+|.+......+.. ..+.+.+++.+. .+...+. ..|+...++ +|++++++.|+++|||++||
T Consensus 207 ~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~-~~~~y~~~~-~e~~~~~~~la~~eGi~ldp 284 (329)
T PRK14045 207 ILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPELYDY-SFGEYGKIT-KEVAKLIRSVGTMEGLILDP 284 (329)
T ss_pred HhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceEeccc-ccCCCCCCC-HHHHHHHHHHHHhhCCCCcc
Confidence 999999999999976331111100 111234444333 2333333 346655566 79999999999999999999
Q ss_pred -cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 023695 225 -SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 256 (278)
Q Consensus 225 -~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~ 256 (278)
|||++++++++++++... +++||+|+ |||.
T Consensus 285 vytgk~~~a~~~~~~~~~~-~~~iv~ih-tGG~ 315 (329)
T PRK14045 285 VYTGKAFYGLMDLAKKGEL-GEKILFIH-TGGI 315 (329)
T ss_pred chHHHHHHHHHHHHHcCCC-CCCEEEEE-CCCc
Confidence 999999999999988643 67788887 8886
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=306.41 Aligned_cols=255 Identities=21% Similarity=0.245 Sum_probs=194.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|.+...+..|++.|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++.
T Consensus 301 ~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~ 376 (610)
T PRK13803 301 HKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLS 376 (610)
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECC
Confidence 799999999999998886 14455789999999999999999999999999764 35688999999999999985
Q ss_pred C-CChHHHHHHH-HHHHHhCCCccccCCCC---C--CCchhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAVQKA-EEILAKTPNAYMLQQFE---N--PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
. .++.++.+.+ +++..+.++.+|++++. + |.+...||+++|.||++|+. ..||+||+|+|+||+++|++
T Consensus 377 ~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~ 456 (610)
T PRK13803 377 GSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIF 456 (610)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHH
Confidence 2 3466665444 44534445666664432 2 33333589999999999984 25999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC-------------------C-ccccccCCCCC-ccc--ccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG-------------------P-HKIQGIGAGFV-PGV--LEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~-------------------~-~~~~gl~~~~~-~~~--~~~~~ 195 (278)
.+|+. +++++||||||.++. ++..+.++ . +...||..+.. |.. +....
T Consensus 457 ~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~ 535 (610)
T PRK13803 457 YHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETG 535 (610)
T ss_pred HHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcC
Confidence 99964 789999999999862 23333321 0 11223332211 111 12334
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.++.+.|+|+|++++++.|++.|||+++++||++++++++++.+. .++++||+++|++|+||+++
T Consensus 536 ~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~ 600 (610)
T PRK13803 536 RAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPT 600 (610)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHH
Confidence 457899999999999999999999999999999999999986553 35789999998889999984
|
|
| >COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=274.50 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=212.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++..++..+.+.|. .+|+++||||+|.|+|+++.+.|++|+|++|.+ ++..|+.+|..+|++++.+++
T Consensus 109 FKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G-- 181 (411)
T COG0498 109 FKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG-- 181 (411)
T ss_pred hhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--
Confidence 899999999999999984 369999999999999999999999999999998 999999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC-CCCCEEEEecCCCccHHHHHHHHHhhCC----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNP---- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~---- 154 (278)
+++++++.+++++++. ++++....-||.. ++|+.|+++||++|+. ..||+|++|+|+||++.|++.++++..+
T Consensus 182 ~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i 259 (411)
T COG0498 182 NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKI 259 (411)
T ss_pred cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccch
Confidence 7899999999999865 5577777778887 8899999999999997 3699999999999999999999998764
Q ss_pred --CcEEEEEecCCCCcccCC-CC---C-CccccccCCCCCccccc------ccccCeEEEeCHHHHHHHHHHHHHhcCce
Q 023695 155 --NIKLYGIEPTESPVLSGG-KP---G-PHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLALKEGLF 221 (278)
Q Consensus 155 --~~~vigV~~~~~~~~~~~-~~---~-~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~ 221 (278)
.+++.+|+++++.++... +. . .+....|..+ .|.++. .+..+..+.|||+|++++++.+++.+|++
T Consensus 260 ~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~ 338 (411)
T COG0498 260 DKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGIL 338 (411)
T ss_pred hcCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcc
Confidence 468899999998766422 11 1 2223333322 233322 22235599999999999999999999999
Q ss_pred eeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 222 VGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 222 ~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+||+||++++++.++.++...++.++|+++|.+|.|+.++
T Consensus 339 ~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 339 IEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred cCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 9999999999999998862246689999999999999886
|
|
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=225.60 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=196.1
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCC----CHHHHHHHHHcCCEEEEe
Q 023695 2 LQKIGYSMISDAEAKGLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLT 75 (278)
Q Consensus 2 K~R~a~~~l~~a~~~g~l~~g~~~vv~ass--GN~g~a~A~~a~~~G~~~~vv~p~~~----~~~~~~~~~~~Ga~v~~~ 75 (278)
|.|+++|++.+|+++|. +++|++.+ +||.+++|++|+++|++|++++.... -..++.+.+.+|+++..+
T Consensus 48 K~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~ 122 (323)
T COG2515 48 KIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAV 122 (323)
T ss_pred HHHHHHHHHhhhhhcCC-----cEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEe
Confidence 89999999999999998 89999866 99999999999999999999997654 233677778899999999
Q ss_pred CCCCCh--H-HHHHHHHHHHHhCCCccccCCCC-CCCchhhhhhchHHHHHhhhC--CCCCEEEEecCCCccHHHHHHHH
Q 023695 76 DPAKGM--K-GAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFL 149 (278)
Q Consensus 76 ~~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~EI~~ql~--~~~d~iv~~vG~Gg~~aGi~~~~ 149 (278)
+...+. + .....++++.++....|.++... ||.. ..||...+.||.+|.. -++|.||+++|||||.||+..++
T Consensus 123 ~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~ 201 (323)
T COG2515 123 DAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGL 201 (323)
T ss_pred cCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHh
Confidence 975554 2 23334444444443344455544 5544 6799999999999986 57999999999999999999999
Q ss_pred HhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCC-CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec-
Q 023695 150 KEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI- 224 (278)
Q Consensus 150 k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p- 224 (278)
...+++.+|||+....++.....+. ..+.++.++.. .....++.++....|+++.+|.+++++.+++.|||.+||
T Consensus 202 ~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpV 281 (323)
T COG2515 202 AQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPV 281 (323)
T ss_pred hhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccc
Confidence 9999999999999888764321111 12222333332 223456678888999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 225 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 225 ~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
++++++.+++++++++.+++++-|+.+|+||..
T Consensus 282 YtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~ 314 (323)
T COG2515 282 YTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAP 314 (323)
T ss_pred cchHHHHHHHHHHhcccCCCCCceEEEEcCCcc
Confidence 999999999999999886666655555599874
|
|
| >PRK09225 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-29 Score=226.69 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=187.6
Q ss_pred CccHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcCCeEEEEeCCC-CCHHHHHHHHHc-CCEE--
Q 023695 1 MLQKIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAF-GAEL-- 72 (278)
Q Consensus 1 ~K~R~a~~---~l~~a~~~g~l~~g~~~vv~assGN~g~a~-A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~-Ga~v-- 72 (278)
||||++.. ++.++++ +. ..+|+++||||+|.|+ |.++.+.|++|+|++|++ ++..++.+|..+ |++|
T Consensus 111 FKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~v 185 (462)
T PRK09225 111 FKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHV 185 (462)
T ss_pred hhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEE
Confidence 89999988 8888887 42 2679999999999999 788999999999999986 999999999999 9977
Q ss_pred EEeCCCCChHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccHHH
Q 023695 73 VLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITG 144 (278)
Q Consensus 73 ~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aG 144 (278)
+.+++ +++++.+.++++..+. -+++..+.. |+.. +.|+.+.++|+++|+.+ .||.|++|+|+||.+.|
T Consensus 186 i~V~G--~fDD~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a 261 (462)
T PRK09225 186 VAVEG--NFDDCQALVKAAFNDEELKEKLKLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILA 261 (462)
T ss_pred EEeCC--CHHHHHHHHHHHhhchhhhhcCceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHH
Confidence 56665 7899998888876541 134444543 6776 78999999999999953 38999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecCCCCccc----CCCCC-----CccccccCCCCCcccccc---------------------c
Q 023695 145 AGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVLEV---------------------N 194 (278)
Q Consensus 145 i~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~~~---------------------~ 194 (278)
.+.+.+.-.|-.|+|+++ ..++.+. .|... .+...+|... .|.++.+ +
T Consensus 262 ~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~ 339 (462)
T PRK09225 262 GYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEE 339 (462)
T ss_pred HHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999844434666999987 4444432 23221 1222333221 1222111 0
Q ss_pred ccC---------------eEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCc
Q 023695 195 IID---------------EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 195 ~~~---------------~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 259 (278)
.-. ..+.|+|+|+.++++.+++++|+++||+||++++++.++.+ ++.++|++.|.+|.|+.
T Consensus 340 ~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~Ta~p~Kf~ 415 (462)
T PRK09225 340 KGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLSTAHPAKFP 415 (462)
T ss_pred cCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEecCCccCCH
Confidence 011 56899999999999999999999999999999999987632 45678999999999987
Q ss_pred ch
Q 023695 260 SS 261 (278)
Q Consensus 260 ~~ 261 (278)
+.
T Consensus 416 ~~ 417 (462)
T PRK09225 416 EV 417 (462)
T ss_pred HH
Confidence 64
|
|
| >cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=221.63 Aligned_cols=247 Identities=14% Similarity=0.062 Sum_probs=187.5
Q ss_pred CccHHHHHH---HHHHHHc--CCCCCCCeEEEEeCCChHHHHH-HHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCC---
Q 023695 1 MLQKIGYSM---ISDAEAK--GLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAFGA--- 70 (278)
Q Consensus 1 ~K~R~a~~~---l~~a~~~--g~l~~g~~~vv~assGN~g~a~-A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga--- 70 (278)
||||++..+ +.+++++ +. .+|+++||||+|.|+ +.++.+.|++|+|++|.+ +++.++.+|..+|+
T Consensus 110 FKD~a~~~l~~l~~~~~~~~~~~-----~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv 184 (460)
T cd01560 110 FKDMALQFLGRLLEYFLKRRNER-----ITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNV 184 (460)
T ss_pred hHHhHHHHHHHHHHHHHHhcCCC-----eEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCce
Confidence 899999876 7777665 44 689999999999994 888999999999999986 99999999999996
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhCC----CCCEEEEecCCCcc
Q 023695 71 ELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG----RIDALVSGIGTGGT 141 (278)
Q Consensus 71 ~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~----~~d~iv~~vG~Gg~ 141 (278)
+++.+++ +++++.+.++++.++. -+++-.+. -|+.. +.++.+.++|+++|+.+ .||.|++|+|+||.
T Consensus 185 ~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgn 260 (460)
T cd01560 185 HVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGN 260 (460)
T ss_pred EEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHH
Confidence 8888886 7899998888876541 13344444 36666 78999999999999953 58999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCCCcc----cCCCCC------CccccccCCCCCcccccc------c-----------
Q 023695 142 ITGAGKFLKEKNPNIKLYGIEPTESPVL----SGGKPG------PHKIQGIGAGFVPGVLEV------N----------- 194 (278)
Q Consensus 142 ~aGi~~~~k~~~~~~~vigV~~~~~~~~----~~~~~~------~~~~~gl~~~~~~~~~~~------~----------- 194 (278)
+.|.+.+.+.-.|-.|+|+++.+.. .+ ..|... .+...+|... .|.++.+ .
T Consensus 261 i~a~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spamdI~-~psn~eR~L~~l~~~~g~~~~~~m~ 338 (460)
T cd01560 261 ILAGYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAMDIL-KSSNFERLLFLLAGRDRTKVKMLME 338 (460)
T ss_pred HHHHHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchhhcC-CCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999765456678999654333 22 123221 1122222221 1222110 0
Q ss_pred -------------------ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 023695 195 -------------------IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFG 255 (278)
Q Consensus 195 -------------------~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG 255 (278)
..-..+.|+|+|+.++++.+++++|+++||.||++++++.++.++ ++.++|++.|.+|
T Consensus 339 ~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p 415 (460)
T cd01560 339 EFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHP 415 (460)
T ss_pred HHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCc
Confidence 001468999999999999999999999999999999999887654 3457899998999
Q ss_pred cCCcch
Q 023695 256 ERYLSS 261 (278)
Q Consensus 256 ~~~~~~ 261 (278)
.|+.+.
T Consensus 416 ~Kf~~~ 421 (460)
T cd01560 416 AKFPEA 421 (460)
T ss_pred ccCHHH
Confidence 998764
|
The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins. |
| >COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=197.52 Aligned_cols=256 Identities=24% Similarity=0.304 Sum_probs=188.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-CC--CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SM--SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~-~~--~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|...+...+.-|++.|+ ++.|.+...|.||.|+|.+|+++|++|+|||-. ++ ...++.+|+.+||+|+.|..
T Consensus 86 HKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~s 161 (396)
T COG0133 86 HKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTS 161 (396)
T ss_pred hhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEecc
Confidence 477778888888999998 356777788999999999999999999999975 32 45678899999999999974
Q ss_pred -CCChHHHHHHH-HHHHHhCCCccccC-----CCCCCCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKA-EEILAKTPNAYMLQ-----QFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a-~~~~~~~~~~~~~~-----~~~~~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
+....++.+.| +.|....++.+|+. |.--|......++.+|.|.-+|+ +.-||.||.|||+|++..|+.
T Consensus 162 Gs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F 241 (396)
T COG0133 162 GSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIF 241 (396)
T ss_pred CCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhc
Confidence 34567777666 66666666667652 22223344567899999998886 345999999999999999998
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCCC-------------------cc-ccccCCCCC-ccc--ccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPGP-------------------HK-IQGIGAGFV-PGV--LEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~~-------------------~~-~~gl~~~~~-~~~--~~~~~ 195 (278)
..|-. .+++++||||+.+-- ++..|+++- +. ..||..+-+ |.. +...-
T Consensus 242 ~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~g 320 (396)
T COG0133 242 HPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIG 320 (396)
T ss_pred ccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcC
Confidence 88764 367999999998753 333333320 00 012211111 111 11112
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
--..+.++|+|++++.+.|.+.|||+.--.|+.|++-+++++.+.. +++.+|+-++..|+|++.+.
T Consensus 321 Ra~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 321 RAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred ceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHH
Confidence 2357899999999999999999999999999999999999987764 45577777777789888753
|
|
| >COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=190.18 Aligned_cols=264 Identities=22% Similarity=0.250 Sum_probs=198.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a-ssGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+|...|....-.++.+|. ..|+|= ..|.||.|++.+|+.+|++|+|||-.. ..+-++-+|+.|||+|+..+
T Consensus 110 HKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSP 184 (432)
T COG1350 110 HKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSP 184 (432)
T ss_pred CCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCC
Confidence 578888999999999998 445544 559999999999999999999999763 34567889999999999887
Q ss_pred CCCC----------------hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhh---CCCCCEEEEecC
Q 023695 77 PAKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS---GGRIDALVSGIG 137 (278)
Q Consensus 77 ~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql---~~~~d~iv~~vG 137 (278)
.+.+ ..-++..|.+.+-++++..|....--+.. ..|+..+|+|..+|+ +..||.+|.|||
T Consensus 185 S~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhv-llhQTViGlEakkQle~~~e~PDv~igcvG 263 (432)
T COG1350 185 SELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHV-LLHQTVIGLEAKKQLEQAGEDPDVIIGCVG 263 (432)
T ss_pred cchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHH-HHHHHHHhHHHHHHHHhcCCCCCEEEEecc
Confidence 5321 11255666666666554445433322223 679999999996665 557999999999
Q ss_pred CCccHHHHHHHHHh---hC-CCcEEEEEecCCCCcccCCCCCCc-----------cccccCCCCCccccc----------
Q 023695 138 TGGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKPGPH-----------KIQGIGAGFVPGVLE---------- 192 (278)
Q Consensus 138 ~Gg~~aGi~~~~k~---~~-~~~~vigV~~~~~~~~~~~~~~~~-----------~~~gl~~~~~~~~~~---------- 192 (278)
+|++++|+..-|-. .+ ..+++|+|+|..++.+..|...-+ .+-.||.++.|+.+.
T Consensus 264 GGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~a 343 (432)
T COG1350 264 GGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVA 343 (432)
T ss_pred CCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcC
Confidence 99999999887732 12 238999999999999886654211 133456555555432
Q ss_pred -------ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcH
Q 023695 193 -------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 193 -------~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
...+-+....+.+|++++.+.|++.|||...|.|+.|+.++++.+.+.+..++..|++++-+|.-.+|-.-|+
T Consensus 344 Ptls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~ 423 (432)
T COG1350 344 PTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYD 423 (432)
T ss_pred hHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHH
Confidence 2333357889999999999999999999999999999999999988877666666666656777778877888
Q ss_pred HHHHH
Q 023695 266 SVRKE 270 (278)
Q Consensus 266 ~~~~~ 270 (278)
++++.
T Consensus 424 ~yl~g 428 (432)
T COG1350 424 KYLEG 428 (432)
T ss_pred HHhhh
Confidence 87654
|
|
| >COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=179.02 Aligned_cols=253 Identities=19% Similarity=0.231 Sum_probs=204.2
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCCe----------------EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGES----------------VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~~----------------~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
+|.|+-.|-+.. |++.|.|+-..+ .|...|+||.|.++...++.+|++++|.|+.++.+
T Consensus 117 IKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~ 196 (443)
T COG3048 117 IKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARA 196 (443)
T ss_pred eeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHH
Confidence 588988887753 567787755433 68889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC--------CCCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG--------GRIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~--------~~~d~ 131 (278)
+|++++|+.|.+|+.... +|..+.+.-++.+++.|..||++..++... ..||...+..+-.|+. ..|-.
T Consensus 197 WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLf 273 (443)
T COG3048 197 WKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLF 273 (443)
T ss_pred HHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceE
Confidence 999999999999999985 788999999999999899999987655544 6799999999999983 24778
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCcccCCC---------------CCCccccccCCCCCcccc---c
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGK---------------PGPHKIQGIGAGFVPGVL---E 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~~~~---------------~~~~~~~gl~~~~~~~~~---~ 192 (278)
|..|||.||...|++.++|.. +.++.++-+||..+|++.-|. .+.+..+||+.+..+..+ .
T Consensus 274 VylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~m 353 (443)
T COG3048 274 VYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAM 353 (443)
T ss_pred EEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHH
Confidence 999999999999999999976 478999999999999875221 123345677766543332 2
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC------------CCCCCeEEEEecCCCc
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP------------ENAGKLIVVIFPSFGE 256 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~------------~~~~~~vv~i~~~gG~ 256 (278)
...+|..|+|+|+..++....|++.||+.+|||+-+++.+..++.+.. ...+.+-+++.++||-
T Consensus 354 e~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~M 429 (443)
T COG3048 354 ERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGM 429 (443)
T ss_pred HHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCc
Confidence 567899999999999999999999999999999878777776553211 1245567888844544
|
|
| >KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=170.76 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=175.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|...+...+..+.+.|+ ++.|.+...|.||.|+|.+|+++|++|+|+|-.. ...-++.+||.+||+|+.+..
T Consensus 154 HKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~s 229 (477)
T KOG1395|consen 154 HKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTS 229 (477)
T ss_pred CCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCC
Confidence 477788888888999988 2556667779999999999999999999999642 345688999999999999875
Q ss_pred C-CChHHHHHHHHH-HHHhCCCccccCC-CC----CCCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAVQKAEE-ILAKTPNAYMLQQ-FE----NPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~~~a~~-~~~~~~~~~~~~~-~~----~~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
. ...+++-..+-+ +..+.+..+|+-. -. -|.....-+.+|+-|-..|. +..||.||.|+|+|++.+|+.
T Consensus 230 Gt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf 309 (477)
T KOG1395|consen 230 GTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLF 309 (477)
T ss_pred CceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCcccccc
Confidence 2 234443333322 2222223334321 11 12222235678888876664 346999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCCc--------ccCCCCCC-----c--cccccCCCCCccc-------------c---cccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESPV--------LSGGKPGP-----H--KIQGIGAGFVPGV-------------L---EVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~~--------~~~~~~~~-----~--~~~gl~~~~~~~~-------------~---~~~~ 195 (278)
.-|..- ..+++|+|+..+... +..++.+. + ..+..|-.+.|.. + ....
T Consensus 310 ~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~g 388 (477)
T KOG1395|consen 310 SPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETG 388 (477)
T ss_pred chhhcc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcC
Confidence 888743 346888888766532 22222210 0 0111111111111 1 1122
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
..+.+.++|.|++++.+.|.+.|||+..|.+..|+++..++.+.. .+++.+|+-+++.|+|++.
T Consensus 389 rae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvq 452 (477)
T KOG1395|consen 389 RAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQ 452 (477)
T ss_pred ceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHH
Confidence 346899999999999999999999999999999999988887776 4788899988888998765
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.61 Score=37.55 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCeE-EEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhh
Q 023695 34 TGIGLAFMAAAKQYRL-IITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 112 (278)
Q Consensus 34 ~g~a~A~~a~~~G~~~-~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (278)
-|..+.++++.+|.++ .-+.+.+.-..-+..+...|-.|.++++. .+...+.++.+.+++|+.-.+..++.+.+ ..
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~ 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EE 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hh
Confidence 4678999999999887 33333333445566677788999999973 34455666777788776444432222121 11
Q ss_pred hhhchHHHHHhhhC-CCCCEEEEecCCCc
Q 023695 113 HYETTGPELWKGSG-GRIDALVSGIGTGG 140 (278)
Q Consensus 113 g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg 140 (278)
-.. +|.+++. ..||.|++++|+--
T Consensus 89 ~~~----~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 89 EEE----AIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCH
Confidence 223 3333332 36999999998864
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.86 E-value=2 Score=38.43 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=42.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+++|.+.+|. .+|..|...+..++.+|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 4566566665 56999999999999999986666665556788999999999863
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.76 E-value=2.9 Score=37.35 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=44.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+.+++|++.||.+.+|.-|..+--.|+.+|...++... ++.|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 467888888899999999999999999999984444332 246666889999976554
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.99 E-value=5 Score=35.86 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=42.3
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+..+..+++|++.+|.. +|..|.+++.+++.+|.+++++ +.++.+++.++.+|++.++.
T Consensus 158 a~~~~~~~~g~~VlV~G-~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDLVIVIG-AGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 34445677876655554 4999999999999999975443 33567888889999975543
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.75 Score=38.19 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=45.0
Q ss_pred EEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 199 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 199 ~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
...||++|+.+++...++..+.+++|.+|.++-...+...+.. +.-.++++-+....|
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aK 205 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAK 205 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhh
Confidence 4579999999999999999999999999999999998877764 333444444334333
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.67 E-value=5.2 Score=35.03 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=43.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+.+++|++.+|...+|..|.++.-.|+.+|.+++++. .++.+.+.++.+|++-++.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 456678887767777789999999999999999865543 2457888888899865443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.6 Score=33.03 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhh
Q 023695 34 TGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 112 (278)
Q Consensus 34 ~g~a~A~~a~~~G~~~~vv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (278)
-|..+.++++.+|.+..--++. +.-..-++.+...+..|.++++. .+...+.++.+.+++|+...+..++.+.. ..
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~ 86 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PE 86 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hh
Confidence 3678899999999883222222 11233455566678999999863 24444555677777776544432222221 11
Q ss_pred hhhchHHHHHhhhC-CCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEE
Q 023695 113 HYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 161 (278)
Q Consensus 113 g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV 161 (278)
. -.+|.+++. ..||.|++++|+---=. .+...+...+..-+++|
T Consensus 87 ~----~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 87 E----EEEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 1 112444442 36999999998864321 22233333444455555
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=88.78 E-value=7.3 Score=35.65 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=42.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.++..+++|++.+| ..+|..|..++..|+.+|.+.+++.. ..+.+++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 344566778766555 67799999999999999998766432 2467888899999974
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.02 E-value=4.6 Score=34.88 Aligned_cols=58 Identities=28% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.++....+|.+.+| ...|..|..++..++.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRRVLV-VGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 333333456755555 4668999999999999999745444 345678888888998543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.13 E-value=9 Score=31.56 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHc--CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEE
Q 023695 4 KIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAEL 72 (278)
Q Consensus 4 R~a~~~l~~a~~~--g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~~Ga~v 72 (278)
|+..+.+..+.+. +.....+++++.-..||.|..+|......|.+++++ . ....++..+. .+|++.
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~ 75 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATV 75 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEE
Confidence 5777778887766 233333356777788999999999999999987754 2 2344444443 335543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.46 E-value=8.2 Score=34.14 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=42.7
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+.+.+.++.+.+|...+|..|.+++..|+.+|.+++++... . ++..++.+|++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 3455667888777777777999999999999999996655432 2 6677788888643
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.34 E-value=5.2 Score=35.85 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=45.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
++++..++||+. |....-|-.|....-+|+.+|.+++.+ +.++.|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 455567788865 666666677777777888888888877 5567888888999998877653
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=86.06 E-value=11 Score=33.36 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=42.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~v~ 73 (278)
+.+.+++|++.+|...+|.-|.+++-.|+.+|.++++..+ +..+.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 3466788877777777899999999999999998555433 3577887877 898543
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=85.56 E-value=5.8 Score=34.90 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=43.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+.+++|++.+|...+|--|.+++..|+..|.++++..+ +..+.+.++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566788877667666799999999999999998665533 356788888899865443
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=85.54 E-value=6 Score=34.92 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=44.4
Q ss_pred cCCCCCCCeEEEEeCC---ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023695 16 KGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 16 ~g~l~~g~~~vv~ass---GN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 76 (278)
.|.++ | .+|+-... +|.++|+..+++++|++++++.|++. ++..++.++..|+++...+
T Consensus 145 ~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 145 FGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred hCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 46543 3 34444445 69999999999999999999999864 5555667777899988776
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.46 E-value=33 Score=32.72 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=41.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+++.-..|.-|++.+..|+.+|-+++++ +..+.++++.+.+|++.+.++.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEecc
Confidence 45888899999999999999999864444 4567889999999999766553
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.40 E-value=11 Score=33.69 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.+.+++|++.+|. .+|-.|.+++..|+.+|.+.++.+. .++.+++.++.+|++.++
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345667888776666 5688999999999999987444442 245678888888985433
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.26 E-value=5.4 Score=34.89 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeC-CChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023695 5 IGYSMISDAEAKGLITPGESVLIEPT-SGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 5 ~a~~~l~~a~~~g~l~~g~~~vv~as-sGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 77 (278)
.|+-||.+-.+ |.+|+ .|+--+ .+--|+++--.|+.+|++.+=++.+... ++-.+.++.+||+-++.+.
T Consensus 147 TAyrmL~dfv~---L~~GD-~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 147 TAYRMLKDFVQ---LNKGD-SVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHHh---cCCCC-eeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHH
Confidence 35667777665 45564 555433 3556778888899999999999876543 4556788999999988874
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.99 E-value=4.9 Score=35.69 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++..+++|++.+|.. .|..|.+++..|+.+|.+++++.+ ++.|++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445678887666655 588899999999999987544422 35678889999997543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family | Back alignment and domain information |
|---|
Probab=84.45 E-value=9.3 Score=30.90 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhh
Q 023695 35 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 113 (278)
Q Consensus 35 g~a~A~~a~~~G~~~~vv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 113 (278)
|..+.++++.+|.+..--++. +.-..-++.....|..|.++++. .+...+.++.+.+++|+.-.+.. +.+... .
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~-~- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEP-E- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCCh-H-
Confidence 577889999999764222221 11123344455678899999863 34455666777778776443321 111111 1
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCC
Q 023695 114 YETTGPELWKGSG-GRIDALVSGIGTG 139 (278)
Q Consensus 114 ~~t~~~EI~~ql~-~~~d~iv~~vG~G 139 (278)
--.+|.+++. ..||.++++.|+=
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCc
Confidence 1123445542 3599999999874
|
The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=84.14 E-value=6.7 Score=32.69 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=42.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|+..+|+.|..++.+-...+.++++++... +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 6778899999999999999999999998776 45567778889999986653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.97 E-value=18 Score=32.04 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=41.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+.++.+.+| ..+|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++.+
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 4566777766555 667999999999999999876666544 3567778888888544
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=83.85 E-value=14 Score=33.30 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|++.+|. .+|..|..++..|+.+|.+.++++ +.++.|++.++.+|++.++
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEe
Confidence 44567788766665 468999999999999998533333 2356778888889986443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.74 E-value=18 Score=32.11 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...+++|.+.+|.+ +|..|.+++..|+.+|.+.++++. .+..+...++.+|++.++
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 445667776666664 689999999999999985444442 345677777778875443
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=83.11 E-value=19 Score=31.82 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=39.8
Q ss_pred HcCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 023695 15 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g--~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~ 75 (278)
+.+.+++| ++.+|...+|..|.++.-.|+.+|. +++++.+ ++.+.+.++. +|++-++.
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 34556665 5666766679999999999999998 5555533 3466777665 88865443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.05 E-value=17 Score=32.45 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~~Ga~v~~ 74 (278)
+.+.+++|.+.+|...+|.-|.++...|+.+|.+++++. .+..|.+.++ .+|++-+.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 346678887777777779999999999999998855442 2456777776 68986544
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=10 Score=35.34 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
|+..+.+..+.+..-+...+.+++.-..||-|..+|.....+|.+++.+-
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 209 FGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 67777777776554445555678888999999999999999999988854
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=82.46 E-value=15 Score=31.89 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
.+...+++|.+.+|...+|..|.+++..|+.+|.+.+++... ..+...++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344567777766666667899999999999999987666443 2445555556763
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.00 E-value=15 Score=32.64 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++....+|.+.+|. .+|..|++....++.+|.+.++++. .++.+++.++.+|++.+.
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 333334566565555 5699999999999999986444433 246788888999997654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=81.97 E-value=11 Score=33.27 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++..+++|.+.+|. .+|--|.+++..++.+|.+ +++ +. .++.+++.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~-~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIG-VD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEE-EC--CCHHHHHHHHHhCCCEEE
Confidence 344456777666665 5689999999999999998 444 32 245677778888885443
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.90 E-value=18 Score=31.96 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.++++.+.+|.. +|..|.+++..|+.+|.+.+++.+ ++.++..++.+|++-
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 566776656655 899999999999999998555433 345677778888743
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=81.33 E-value=3.7 Score=32.34 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=32.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
|....+||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 5567999999999999999999999997754 55555554433
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.66 E-value=12 Score=33.38 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
--+.||...-|..-+| .|.----+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 177 ~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred cCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3357997655555556 8887788899999999998443 24678889999999987764
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.55 E-value=21 Score=31.49 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.++++...+|...+|..|.+++..|+.+|.++++..+. +.+.+.++.+|++-
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 56777676777777789999999999999986665333 35666667777643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=80.48 E-value=15 Score=32.03 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+++.+|...+|..|.+++..|+.+|.++++.... +.+.+.++.+|++-
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 194 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKE 194 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCE
Confidence 4455666666999999999999999986555333 45677777888743
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.44 E-value=12 Score=33.26 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=40.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+...+++|.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..+++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceE
Confidence 344566777666665 57999999999999999985544432 4567777888888543
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=80.25 E-value=16 Score=31.80 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=40.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+.+.++++++.+|. .+|-.|.+++..|+.+|.+.+++ ..++.+.+.++.+|++.+
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVETV 203 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcEE
Confidence 455677888776666 47899999999999999995444 223567777777887643
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=80.17 E-value=44 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=41.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEeCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDP 77 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~~~ 77 (278)
+++....|.-|+..+..++.+|...++++ +.++.|+++.+. .|++++..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 68888999999999999999999888888 446788888877 6777666553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 278 | ||||
| 1z7y_A | 322 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-116 | ||
| 2isq_A | 320 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-116 | ||
| 1z7w_A | 322 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-116 | ||
| 4aec_A | 430 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-106 | ||
| 3vc3_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase K95 | 4e-91 | ||
| 3vbe_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase In | 5e-91 | ||
| 3rr2_A | 314 | Structure Of A Cysteine Synthase (O-Acetylserine Su | 2e-74 | ||
| 2q3d_A | 313 | 2.2 A Resolution Crystal Structure Of O-acetylserin | 6e-74 | ||
| 2q3b_A | 313 | 1.8 A Resolution Crystal Structure Of O-Acetylserin | 6e-74 | ||
| 4i1y_A | 314 | The Structure Of Cysteine Synthase From Mycobacteri | 9e-74 | ||
| 3t4p_A | 334 | Crystal Structure Of O-Acetyl Serine Sulfhydrylase | 3e-71 | ||
| 4air_A | 354 | Leishmania Major Cysteine Synthase Length = 354 | 2e-69 | ||
| 1d6s_A | 322 | Crystal Structure Of The K41a Mutant Of O-Acetylser | 2e-67 | ||
| 1oas_A | 322 | O-Acetylserine Sulfhydrylase From Salmonella Typhim | 2e-67 | ||
| 1y7l_A | 316 | O-Acetylserine Sulfhydrylase Complex Length = 316 | 4e-61 | ||
| 2egu_A | 308 | Crystal Structure Of O-Acetylserine Sulfhydrase Fro | 1e-59 | ||
| 1ve1_A | 304 | Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh | 3e-57 | ||
| 1o58_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase ( | 9e-52 | ||
| 3fca_A | 291 | Genetic Incorporation Of A Metal-Ion Chelating Amin | 1e-51 | ||
| 3bm5_A | 338 | Crystal Structure Of O-Acetyl-Serine Sulfhydrylase | 4e-46 | ||
| 2pqm_A | 343 | Crystal Structure Of Cysteine Synthase (Oass) From | 4e-46 | ||
| 2bht_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase B | 3e-45 | ||
| 2bhs_A | 303 | Crystal Structure Of Cysteine Synthase B Length = 3 | 1e-44 | ||
| 2v03_A | 303 | High Resolution Structure And Catalysis Of An O- Ac | 6e-44 | ||
| 2jc3_A | 303 | Structure Of O-acetylserine Sulfhydrylase B From Sa | 2e-43 | ||
| 1m54_A | 363 | Cystathionine-Beta Synthase: Reduced Vicinal Thiols | 8e-38 | ||
| 1jbq_A | 435 | Structure Of Human Cystathionine Beta-Synthase: A U | 3e-37 | ||
| 3dki_A | 326 | 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac | 1e-29 | ||
| 3dwg_A | 325 | Crystal Structure Of A Sulfur Carrier Protein Compl | 1e-29 | ||
| 3dwi_A | 323 | Crystal Structure Of Mycobacterium Tuberculosis Cys | 4e-29 | ||
| 3pc2_A | 527 | Full Length Structure Of Cystathionine Beta-Synthas | 5e-29 | ||
| 3vsc_A | 389 | Crystal Structure Of The K127a Mutant Of O-Phosphos | 5e-05 | ||
| 1wkv_A | 389 | Crystal Structure Of O-Phosphoserine Sulfhydrylase | 5e-05 |
| >pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 | Back alignment and structure |
|
| >pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 | Back alignment and structure |
|
| >pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 | Back alignment and structure |
|
| >pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 | Back alignment and structure |
|
| >pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 | Back alignment and structure |
|
| >pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 | Back alignment and structure |
|
| >pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 | Back alignment and structure |
|
| >pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 | Back alignment and structure |
|
| >pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 | Back alignment and structure |
|
| >pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 | Back alignment and structure |
|
| >pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 | Back alignment and structure |
|
| >pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 | Back alignment and structure |
|
| >pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 | Back alignment and structure |
|
| >pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 | Back alignment and structure |
|
| >pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 | Back alignment and structure |
|
| >pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 | Back alignment and structure |
|
| >pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 | Back alignment and structure |
|
| >pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 | Back alignment and structure |
|
| >pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 | Back alignment and structure |
|
| >pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 | Back alignment and structure |
|
| >pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 | Back alignment and structure |
|
| >pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 | Back alignment and structure |
|
| >pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 | Back alignment and structure |
|
| >pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 | Back alignment and structure |
|
| >pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326 | Back alignment and structure |
|
| >pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325 | Back alignment and structure |
|
| >pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323 | Back alignment and structure |
|
| >pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 | Back alignment and structure |
|
| >pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 | Back alignment and structure |
|
| >pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 278 | |||
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 0.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 0.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 0.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 0.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 0.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 0.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 1e-180 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 1e-175 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 1e-170 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 1e-161 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 1e-157 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 1e-150 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 1e-143 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 1e-142 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 6e-17 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 2e-16 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 7e-13 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 9e-13 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 3e-12 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 6e-12 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 6e-12 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 1e-11 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 2e-11 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 3e-11 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 2e-09 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 2e-09 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 3e-09 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 8e-09 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 2e-05 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 3e-04 |
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 | Back alignment and structure |
|---|
Score = 538 bits (1388), Expect = 0.0
Identities = 226/274 (82%), Positives = 251/274 (91%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRII
Sbjct: 49 IGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRII 108
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG
Sbjct: 109 LLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKG 168
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIGA
Sbjct: 169 TGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGA 228
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENAG
Sbjct: 229 GFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAG 288
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
KL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 289 KLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 | Back alignment and structure |
|---|
Score = 534 bits (1377), Expect = 0.0
Identities = 144/271 (53%), Positives = 196/271 (72%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+G+++ AE +G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR +
Sbjct: 54 LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCL 113
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
LR FGAE++LT A GMKGAV A++I+A PNA + QF N IH ETTGPE+W+
Sbjct: 114 LRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQ 173
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+ +D ++G+GTGGT+TG + LK+ + ++ +EPTESPVLSGGKPGPHKIQGIG
Sbjct: 174 TNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGP 233
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP VL+ ++IDEV+ V+ D+AIETA L +G+F G S G AA++IA+RPE G
Sbjct: 234 GFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEG 293
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMT 275
K IV + PSFGERYLS+ L+ SVR E S+
Sbjct: 294 KTIVTVIPSFGERYLSTTLYRSVRDEVSSLP 324
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 | Back alignment and structure |
|---|
Score = 537 bits (1385), Expect = 0.0
Identities = 204/273 (74%), Positives = 243/273 (89%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR++
Sbjct: 157 IGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVL 216
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 217 LKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDD 276
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIGA
Sbjct: 277 TKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGA 336
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPENAG
Sbjct: 337 GFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAG 396
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277
KLI V+FPSFGERYLS+ LF+S+R+E E M E
Sbjct: 397 KLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 | Back alignment and structure |
|---|
Score = 517 bits (1333), Expect = 0.0
Identities = 147/264 (55%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +M+ AE GLI P ++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR++
Sbjct: 50 IGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRML 108
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
LRA+GAEL+LT A GM GA+ KAEE+ ++ QQFENPANP IH TT E+W+
Sbjct: 109 LRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRD 168
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+ G++D +V+G+GTGGTITG + +KE+ P+ + +EP SPVLSGG+ GPH IQGIGA
Sbjct: 169 TDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGA 228
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP VL+ +++DE++ V +++A+ A+ LA +EGL VGISSG A AA+++A+RPENAG
Sbjct: 229 GFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAG 288
Query: 245 KLIVVIFPSFGERYLSSVLFESVR 268
KLIVV+ P FGERYLS+ LF V
Sbjct: 289 KLIVVVLPDFGERYLSTPLFADVA 312
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 | Back alignment and structure |
|---|
Score = 500 bits (1290), Expect = 0.0
Identities = 114/271 (42%), Positives = 176/271 (64%), Gaps = 4/271 (1%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+G++++ A G + PG +IE TSGNTGI L A YR+ I MP++MS+ER++I
Sbjct: 61 VGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI 119
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWK 123
++AFGAEL+LT+ KGM GA+++ +++ + P Y + QF NP N H+ T E+W+
Sbjct: 120 MKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWE 178
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+ G +D +VS +GT GT+ G + LKEK IK+ +EP ES VL G GPH IQGIG
Sbjct: 179 DTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIG 238
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGF+P + + +DE++ + + +A + A+ + +G+ G+SSG A A ++ A++PEN
Sbjct: 239 AGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENE 298
Query: 244 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 274
GK IV+I PS GERYLS+ L++ ++ E +
Sbjct: 299 GKTIVIIVPSCGERYLSTDLYK-IKDEGTKI 328
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 | Back alignment and structure |
|---|
Score = 499 bits (1287), Expect = 0.0
Identities = 149/272 (54%), Positives = 194/272 (71%), Gaps = 9/272 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +
Sbjct: 45 IGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRL 103
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWK 123
L G LVLT+ AKGMKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+WK
Sbjct: 104 LCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWK 163
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLK-EKNPNIKLYGIEPTESPVLSGG------KPGP 176
+ G++D +V+G+GTGG+ITG + +K + I +EP ESPV+S KPGP
Sbjct: 164 DTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGP 223
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
HKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA +
Sbjct: 224 HKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL 283
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFESVR 268
AK PE A KLIVVI PS ERYLS+ LFE +
Sbjct: 284 AKLPEFADKLIVVILPSASERYLSTALFEGIE 315
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 | Back alignment and structure |
|---|
Score = 497 bits (1282), Expect = e-180
Identities = 137/262 (52%), Positives = 187/262 (71%), Gaps = 3/262 (1%)
Query: 5 IGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+ MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+
Sbjct: 43 PAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKR 102
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+L+AFGAELVLTDP + M A ++A L + A+M QF+NPAN + HYETTGPEL++
Sbjct: 103 VLKAFGAELVLTDPERRMLAAREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYE 161
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG+G
Sbjct: 162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMG 221
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A R
Sbjct: 222 PGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGP 280
Query: 244 GKLIVVIFPSFGERYLSSVLFE 265
GK + I P G +YLS+ L+
Sbjct: 281 GKRVACISPDGGWKYLSTPLYA 302
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 | Back alignment and structure |
|---|
Score = 483 bits (1247), Expect = e-175
Identities = 148/261 (56%), Positives = 194/261 (74%), Gaps = 3/261 (1%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I +MI AE G + PG ++EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR +
Sbjct: 48 IALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNL 106
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
LRA+GAELVLT A+GM+GA+ KAEE L + +M QQF+N ANP+IH TTG E+ +
Sbjct: 107 LRAYGAELVLTPGAQGMRGAIAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQ 165
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
G ++DA V+G+GTGGTITGAGK L+E PNIK+Y +EP +SPVLSGGKPGPHKIQGIGA
Sbjct: 166 MGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGA 225
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP +L+ +I D V+ V+++EA A+ A +EG+ GISSG A AA+++AK G
Sbjct: 226 GFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKG 284
Query: 245 KLIVVIFPSFGERYLSSVLFE 265
K ++ I PS GERYLS+ L++
Sbjct: 285 KKVLAIIPSNGERYLSTPLYQ 305
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 | Back alignment and structure |
|---|
Score = 470 bits (1213), Expect = e-170
Identities = 132/259 (50%), Positives = 178/259 (68%), Gaps = 6/259 (2%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +
Sbjct: 50 PALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKV 106
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K
Sbjct: 107 LKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQ 165
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+IDA V+G+GTGGTI+G G+ LK +K+ +EP +SPVLSGG+PG H IQGIG
Sbjct: 166 MDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIG 225
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 226 AGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPD 285
Query: 244 GKLIVVIFPSFGERYLSSV 262
+ +V + P ERYLS +
Sbjct: 286 AR-VVTVAPDHAERYLSIL 303
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 | Back alignment and structure |
|---|
Score = 449 bits (1158), Expect = e-161
Identities = 99/272 (36%), Positives = 145/272 (53%), Gaps = 11/272 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
MI AEA GL+ PG + ++EPTSGNTGI LA A K YRLI MP + S+ERR +
Sbjct: 56 PAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQL 114
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L +GA+++ + G AV A+E+ A P+ ML Q+ NPAN HY TGPEL
Sbjct: 115 LELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD 174
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
I V+G+GT GT+ G G+FL+E N+K+ EP G + ++ +
Sbjct: 175 L-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDE 226
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GFVP + + I+ V + +A+ + L EG+F GIS+G AA+ + AG
Sbjct: 227 GFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAG 286
Query: 245 K--LIVVIFPSFGERYLSSVLFESVRKEAESM 274
+ I ++ G +YLS+ + +AE+
Sbjct: 287 ERADIALVVADAGWKYLSTGAYAGSLDDAETA 318
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 | Back alignment and structure |
|---|
Score = 437 bits (1127), Expect = e-157
Identities = 112/261 (42%), Positives = 162/261 (62%), Gaps = 11/261 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
SMI +AE +G I PG VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 44 AALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 102
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+RA+GAEL+L +GM+GA A E+ + +L QF NP NP HY TTGPE+W+
Sbjct: 103 MRAYGAELILVTKEQGMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQ 161
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 162 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------- 214
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +A N
Sbjct: 215 EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPD 272
Query: 245 KLIVVIFPSFGERYLSSVLFE 265
++V I G+RYLS+ +F
Sbjct: 273 AVVVAIICDRGDRYLSTGVFG 293
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-150
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 15/263 (5%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+IS + + G S++ + TS N G+ L+ +A YR + +P + +++
Sbjct: 130 PAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLL 186
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK- 123
R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 187 PRLLGAQVIVDPEAPSTVHLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQ 245
Query: 124 --GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 181
G + + +GT G ++ A +L+ +P+I+ ++P + + G I+
Sbjct: 246 SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRR 298
Query: 182 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 241
+ G + + ++I + +V+ +EA+E +A +GL +G S G A A + A +
Sbjct: 299 VETGMLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGD 357
Query: 242 NAGKLIVVIFPSFGERYLSSVLF 264
VV+ P G +YLS V
Sbjct: 358 LEPGDYVVVVPDTGFKYLSLVQN 380
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 | Back alignment and structure |
|---|
Score = 411 bits (1059), Expect = e-143
Identities = 96/269 (35%), Positives = 151/269 (56%), Gaps = 10/269 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IGY M+ DAE +GL+ PG +IEPTSGNTGIGLA A K Y+ II MP MS E+
Sbjct: 96 IGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSA 154
Query: 65 LRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
LR GA+++ T +G + A+++ +TPN+ +L Q+ N NP HY+ T E+
Sbjct: 155 LRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEI 214
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPGP 176
++D +V GT GTI+G G+ +KE+ P+ ++ G++P S + L+
Sbjct: 215 LWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQF 274
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
++++GIG F P V + ++D ++ + ++ L +EGL G SSGGA AA+E
Sbjct: 275 YEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEH 334
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFE 265
A++ G+ VVI P Y++ + +
Sbjct: 335 ARK-LKKGQRCVVILPDGIRNYMTKFVSD 362
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-142
Identities = 104/269 (38%), Positives = 157/269 (58%), Gaps = 10/269 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I MI DAE G + PG +IEPTSGNTGIGLA AA + YR II MP MS E+ +
Sbjct: 144 ISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV 202
Query: 65 LRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E+
Sbjct: 203 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI 262
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPGP 176
+ G++D LV+ +GTGGTITG + LKEK P ++ G++P S + L+ +
Sbjct: 263 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT 322
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 323 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA 382
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFE 265
A+ + G+ VVI P Y++ L +
Sbjct: 383 AQELQ-EGQRCVVILPDSVRNYMTKFLSD 410
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 6e-17
Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 84
T GN G G+A+ A +I MP + ER + GAE ++TD
Sbjct: 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD--T 171
Query: 85 VQKAEEILAKTPNAYMLQQFENPANPKIH------YETTGPELW---KGSGGRIDALVSG 135
V+ + A+ ++Q KI Y T E + G ++
Sbjct: 172 VRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQ 230
Query: 136 IGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIG 183
G G G +L + N+ +EP ++ G G+
Sbjct: 231 AGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Query: 184 AGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 234
G P L I+ + + A ++L G I SG + A +
Sbjct: 291 CG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGL 344
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 32/262 (12%)
Query: 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66
YS + E K + + ++GN G+ + M+A +++ + M A ++ LR
Sbjct: 146 YSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLR 203
Query: 67 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL----- 121
+ G +V + + AV++ + PN + EN + Y G L
Sbjct: 204 SHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRLKAQFA 260
Query: 122 ---WKGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV----LSGGK 173
+ G GG G LK ++ + EPT SP + G
Sbjct: 261 QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGL 320
Query: 174 PGPHKIQGIGAGFV----------PGVLEVNII----DEVVQVSSDEAIETAKLLALKEG 219
+Q IG + + D +S + LA +EG
Sbjct: 321 HDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEG 380
Query: 220 LFVGISSGGAAAAAIEIAKRPE 241
+ + S+ A +
Sbjct: 381 IRLEPSALAGMAGPQRVCASVS 402
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-13
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 28/249 (11%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 80
G+ ++ ++GNT A AA + +P +++ + GA+++ D
Sbjct: 84 GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GN 141
Query: 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 138
++ A ++ A P ++ N NP +T E+ G D +G
Sbjct: 142 FDDCLELARKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGN 197
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 187
G IT K E K P ++ G + + L G+P H I G
Sbjct: 198 AGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSP 255
Query: 188 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 241
V + + S +E + L+A EG+FV +S + A ++
Sbjct: 256 ASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWV 315
Query: 242 NAGKLIVVI 250
G +V
Sbjct: 316 ARGSTVVCT 324
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 9e-13
Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 80
G + ++GNT A AA I+ +PA +L + GA +V + G
Sbjct: 76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---G 132
Query: 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 138
+ + L + ++ N NP +T E+ G +G
Sbjct: 133 NFDDALRLTQKLTEAFPVALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKP--GPHKI-QGIGAGFV 187
G IT K + P ++ G + + L G+P P + I G
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNP 246
Query: 188 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 241
V +E + V+ +E + + LA +EG+F +S A A ++ +
Sbjct: 247 ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRL 306
Query: 242 NAGKLIVVI 250
+V+
Sbjct: 307 EPESTVVLT 315
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 80
G+ +I ++GNT A AA R + +P ++ + +GA+++ G
Sbjct: 78 GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ---G 134
Query: 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 138
+ + ++ N NP +T E+ G D +G
Sbjct: 135 TFDDALNIVRKIGENFPVEIV----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGN 190
Query: 139 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 187
G IT K K K P ++ G + + + G P + I G
Sbjct: 191 AGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNP 248
Query: 188 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 241
+ E + VS E + KL+A EG+F +S + A I++ +
Sbjct: 249 YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFF 308
Query: 242 NAGKLIVVI 250
G+++
Sbjct: 309 KGGEVVTCT 317
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 6e-12
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 31 SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 90
SGN G L + A + I +P + +++ ++A+GA +V +P+ + A+
Sbjct: 84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKR 141
Query: 91 ILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITG 144
+ +T M+ + P T E+ +DALV +G GG + G
Sbjct: 142 VTEET-EGIMVHPNQEP-------AVIAGQGTIALEVLNQVPL-VDALVVPVGGGGMLAG 192
Query: 145 AGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAGFVPGVLEVN 194
+K P++K+Y EP+ + GK P+ G+ + G+
Sbjct: 193 IAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS--IGLNTWP 250
Query: 195 II----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA-GKLIVV 249
II D++ V+ DE +L+ + L + ++G AA + + + K I +
Sbjct: 251 IIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICI 310
Query: 250 I 250
+
Sbjct: 311 V 311
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 6e-12
Identities = 47/300 (15%), Positives = 99/300 (33%), Gaps = 46/300 (15%)
Query: 9 MISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRA 67
++S + + ++G+T L+ A+ I+ +PA +S+ + + A
Sbjct: 170 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA 229
Query: 68 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGS 125
GA ++ D K + Y+ N N +T E+ +
Sbjct: 230 NGAFVLSID---TDFDGCMKLIREITAELPIYLA----NSLNSLRLEGQKTAAIEILQQF 282
Query: 126 GGRI-DALVSGIGTGGTITGAGKFLK--------EKNPNIKLYGIEPTE-SPVLSGGKPG 175
++ D ++ G G I K K ++ P ++ + +P+ K G
Sbjct: 283 DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSG 340
Query: 176 PHKIQ----------GIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGL 220
+ I G V V + + V + + +E + A A G+
Sbjct: 341 WKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEAT-EEELMDAMAQADSTGM 399
Query: 221 FVGISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAE 272
F+ +G A A ++ + VV+ F Y S+ + + + +
Sbjct: 400 FICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 62/284 (21%)
Query: 2 LQKIG-------YSMI---SDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 50
QK+G + + ++A+ G++T +SGN +A A
Sbjct: 50 FQKMGAFKFRGALNALSQLNEAQRKAGVLTF--------SSGNHAQAIALSAKILGIPAK 101
Query: 51 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANP 110
I MP + + +G ++++ D + A+EI +
Sbjct: 102 IIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISEREGLTI----------- 148
Query: 111 KIH-YE---------TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160
I Y+ T EL++ G +DAL +G GG ++G+ + PN ++YG
Sbjct: 149 -IPPYDHPHVLAGQGTAAKELFE-EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYG 206
Query: 161 IEPTESPV----LSGGKPGPHKIQ-----GIGAGFVPGVLEVNII----DEVVQVSSDEA 207
+EP G G G +II D+++ VS +E
Sbjct: 207 VEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ-HLGNYTFSIIKEKVDDILTVSDEEL 265
Query: 208 IETAKLLALKEGLFV-GISSGGAAAAAIEIAKRPENAGKLIVVI 250
I+ K A + + V +G + AA A + + K I +I
Sbjct: 266 IDCLKFYAARMKIVVEP--TGCLSFAAA-RAMKEKLKNKRIGII 306
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 61/284 (21%), Positives = 101/284 (35%), Gaps = 60/284 (21%)
Query: 2 LQKIG-------YSMISDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53
LQK G S E KGL+ +SGN G+A+ A + ++ M
Sbjct: 44 LQKTGSFKARGALSKALALENPKGLLAV--------SSGNHAQGVAYAAQVLGVKALVVM 95
Query: 54 PASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 113
P S ++ RA+GAE+V K + A + +T A IH
Sbjct: 96 PEDASPYKKACARAYGAEVVDRGVT--AKNREEVARALQEETGYAL------------IH 141
Query: 114 -YE---------TTGPELW---KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160
++ T G EL G A+++ +G GG + G +K +P + G
Sbjct: 142 PFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLG 201
Query: 161 IEPTESPV----LSGGKPGPHKIQ------GIGAGFVPGVLEVNII----DEVVQVSSDE 206
+EP + L G+ + G+ G I+ D ++ VS +
Sbjct: 202 VEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL-SLGERTFPILRERVDGILTVSEEA 260
Query: 207 AIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+E +LL + V GA A + L +++
Sbjct: 261 LLEAERLLFTRTKQVV--EPTGALPLAAVLEHGARLPQTLALLL 302
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 46/281 (16%), Positives = 91/281 (32%), Gaps = 59/281 (20%)
Query: 2 LQKIG-------YSMI---SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 51
Q G + + ++GN G+ A+ A I
Sbjct: 70 AQPSGSFKIRGIGHFCKRWAKQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATI 121
Query: 52 TMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP 107
+P + L+ GA + D A + A+ + P + F++P
Sbjct: 122 VVPGTTPALTIERLKNEGATCKVVGELLDEAF------ELAKALAKNNPGWVYIPPFDDP 175
Query: 108 ------ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYG 160
A + EL + + A+ +G GG + G + L+E ++ +
Sbjct: 176 LIWEGHA-------SIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIA 228
Query: 161 IEPTESPV----LSGGK----PGPHKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEA 207
+E + + GK P + + +G G + + +S EA
Sbjct: 229 METFGAHSFHAATTAGKLVSLPKITSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEA 287
Query: 208 IETAKLLALKEGLFVGISSGGAAAAAIE--IAKRPENAGKL 246
+ + E + V + GAA AA+ + ++ + G L
Sbjct: 288 VAAIEKFVDDEKILVE-PACGAALAAVYSHVIQKLQLEGNL 327
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 37 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 92
G+AF +A + +I MP + + + +R FG E++L D AK KA E L
Sbjct: 93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAK------AKAIE-L 145
Query: 93 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 146
++ + F++P T EL + +D + +G GG G
Sbjct: 146 SQQQGFTWVPPFDHP-------MVIAGQGTLALELLQ-QDAHLDRVFVPVGGGGLAAGVA 197
Query: 147 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFV-------PGVLEVNI 195
+K+ P IK+ +E +S L G P + +G F G +
Sbjct: 198 VLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-FAEGVAVKRIGDETFRL 254
Query: 196 I----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
D+++ V SD K L S A A + G+ + I
Sbjct: 255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-09
Identities = 58/291 (19%), Positives = 94/291 (32%), Gaps = 66/291 (22%)
Query: 2 LQKIG-------YSMI---SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 51
+Q G + + L+ + GN GI A+ A I
Sbjct: 31 VQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--------SGGNAGIAAAYAARKLGIPATI 82
Query: 52 TMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP 107
+P S SL+ L+ GAE+ LT D A +A+E LAK + F++P
Sbjct: 83 VLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN------LRAQE-LAKRDGWENVPPFDHP 135
Query: 108 ------ANPKIHYETTGPELWKGSGGRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYG 160
A + EL ALV + G G L+ ++ +
Sbjct: 136 LIWKGHA-------SLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIA 188
Query: 161 IEPTESPV----LSGGKPGPHKI-----QGIGAGFVPGVLEVNII----DEVVQVSSDEA 207
+E + ++ GK + +GA + + V EA
Sbjct: 189 METHGAHCFNAAITAGKLVTLPDITSVAKSLGAK-TVAARALECMQVCKIHSEVVEDTEA 247
Query: 208 IETAKLLALKEGLFVGISSGGAAAAAI--------EIAKRPENAGKLIVVI 250
+ + L E + V + GAA AAI + + +VVI
Sbjct: 248 VSAVQQLLDDERMLVE-PACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVI 297
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 8e-09
Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 43/239 (17%)
Query: 37 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 92
G+A I MP + + +RA G ++VL D A+ A E L
Sbjct: 122 GVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ------THALE-L 174
Query: 93 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 146
++ + F++P T G E+ + I A+ +G GG I G
Sbjct: 175 SEKDGLKYIPPFDDP-------GVIKGQGTIGTEINR-QLKDIHAVFIPVGGGGLIAGVA 226
Query: 147 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFVPGV---------LEV 193
F K+ PN K+ G+EP + L G F GV
Sbjct: 227 TFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---FADGVAVALVGEYTFAK 283
Query: 194 --NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+ID +V V++D K + + + S A A A + + + IV I
Sbjct: 284 CQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAI 342
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 23/181 (12%)
Query: 88 AEEILAKTPNAYML-QQFENPANPKIHY---ETTGPELWKGSGGRIDALVSGIGTGGTIT 143
E + A Y + + + + G + D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 144 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI--------GAGFVPGVLEVNI 195
G ++ G+ + +I I G +V +
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 196 IDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVV 249
+ + ++ +E +L A EG+ + G + IE+ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 250 I 250
Sbjct: 320 A 320
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 3e-04
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 30/263 (11%)
Query: 10 ISDAEAKG---LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE------ 60
++DA +G LIT G N A +AA + + +
Sbjct: 73 VADALREGADTLITAGAI------QSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLT 126
Query: 61 --RRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 117
R++L F ++ + D A I A+ Y++ + A + Y +
Sbjct: 127 NGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVES 186
Query: 118 GPELWK--GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 175
E+ + + ++V G+ GT G L+ P+++L G+ + S + KP
Sbjct: 187 ALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSV--AEQKPK 244
Query: 176 PHKIQGIGAGFVPGV--LEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGG 228
+Q AG + ++++ D+ V +D +E KLLA EG+ + + +G
Sbjct: 245 VIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGK 304
Query: 229 AAAAAIE-IAKRPENAGKLIVVI 250
A A I+ I+++ N I+ I
Sbjct: 305 AMAGLIDGISQKRFNDDGPILFI 327
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 278 | |||
| 3vc3_A | 344 | Beta-cyanoalnine synthase; beta-cyanoalanine synth | 100.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 100.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 100.0 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 100.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 100.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 100.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 100.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 100.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 100.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 100.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 100.0 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 100.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 100.0 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 100.0 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 100.0 | |
| 4h27_A | 364 | L-serine dehydratase/L-threonine deaminase; PLP de | 100.0 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 100.0 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 100.0 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 100.0 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 100.0 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 100.0 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 100.0 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 100.0 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 100.0 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 100.0 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 100.0 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 100.0 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 100.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 100.0 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 100.0 | |
| 1f2d_A | 341 | 1-aminocyclopropane-1-carboxylate deaminase; carbo | 100.0 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 100.0 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 100.0 | |
| 1x1q_A | 418 | Tryptophan synthase beta chain; structural genomic | 100.0 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 100.0 | |
| 1v8z_A | 388 | Tryptophan synthase beta chain 1; beta+alpha, rike | 100.0 | |
| 1qop_B | 396 | Tryptophan synthase beta chain; lyase, carbon-oxyg | 100.0 | |
| 2o2e_A | 422 | Tryptophan synthase beta chain; amino-acid biosynt | 100.0 | |
| 1vb3_A | 428 | Threonine synthase; PLP-dependent enzyme, lyase; H | 100.0 | |
| 4f4f_A | 468 | Threonine synthase; structural genomics, niaid, na | 100.0 | |
| 1kl7_A | 514 | Threonine synthase; threonine synthesis, pyridoxal | 100.0 | |
| 3v7n_A | 487 | Threonine synthase; ssgcid, structural genomics, s | 100.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.08 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.7 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.64 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.52 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.5 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.27 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.16 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.04 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.88 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.85 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 92.68 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.43 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.42 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.3 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.24 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 91.68 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.54 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.36 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.31 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.19 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.17 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.14 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.85 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.84 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 90.84 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.78 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.78 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 90.72 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.62 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 90.45 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.36 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.34 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.24 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 90.17 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 90.08 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.0 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.88 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.82 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.8 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.74 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 89.66 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 89.52 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.51 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 89.47 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 89.43 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.17 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.89 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.39 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 88.18 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.08 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 87.93 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 87.78 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 87.49 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 87.49 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.49 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.13 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 87.1 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.99 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 86.38 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 85.99 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 85.73 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 85.67 | |
| 1t57_A | 206 | Conserved protein MTH1675; structural genomics, FM | 85.56 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 84.82 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 84.57 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 84.42 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 84.42 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 84.31 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 83.99 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 82.71 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 82.51 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 82.09 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 82.02 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 81.73 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 81.32 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 80.54 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 80.46 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 80.21 |
| >3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=432.54 Aligned_cols=277 Identities=60% Similarity=1.053 Sum_probs=257.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+|+++|.++||.++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.+++..+
T Consensus 65 fK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~ 144 (344)
T 3vc3_A 65 IADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144 (344)
T ss_dssp TTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCc
Confidence 89999999999999999999988899999999999999999999999999999999999999999999999999987545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
+..+...+.++..+.++.++++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|+++||+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vig 224 (344)
T 3vc3_A 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYG 224 (344)
T ss_dssp HHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred chHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEE
Confidence 55666666666666678999999999998889999999999999988899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||.+++.+..+++.++.+++++.+..+...+.+.+|.++.|+|+|++++++.|+++||++++|+||+++++++++++..
T Consensus 225 Vep~~s~~l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~v~v~d~eai~a~~~L~~~eGi~v~~ssga~~~aAl~~a~~~ 304 (344)
T 3vc3_A 225 VEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLP 304 (344)
T ss_dssp EEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSG
T ss_pred EcCCCChhhcCCCCCCeeEecccccccCcccchhhceEEEEECHHHHHHHHHHHHHHCCCEEehhHHHHHHHHHHHhccc
Confidence 99999999988888888889998888788888899999999999999999999999999999999999999999988765
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..++++||+|+||+|+||+|+.+|++|+++.+++.+.
T Consensus 305 ~~~g~~VV~il~d~G~rYlst~~~~~~~~e~~~~~p~ 341 (344)
T 3vc3_A 305 ENKGKLIVTVHPSFGERYLSSVLFQELRQEAENMQPV 341 (344)
T ss_dssp GGTTCEEEEEECBBGGGGTTSTTTHHHHHHHHTCCCB
T ss_pred cCCCCEEEEEECCCchhhccchhhHHHHHHhccCCCC
Confidence 5688999999999999999999999999998887664
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=440.28 Aligned_cols=277 Identities=74% Similarity=1.193 Sum_probs=256.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.++||.++||++|+||||+|+|++|+++|++|+||||++++..|++.++.|||+|+.+++..+
T Consensus 153 fKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~ 232 (430)
T 4aec_A 153 VKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232 (430)
T ss_dssp TTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCC
Confidence 89999999999999999999998889999999999999999999999999999999999999999999999999986556
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.++++|++||+||.++..||.|++.||++|+.+.||+||+|+|+|||++|++.++|+.+|+++|||
T Consensus 233 ~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVig 312 (430)
T 4aec_A 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIG 312 (430)
T ss_dssp HHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEE
T ss_pred hHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 88899999999988778899999999998789999999999999977899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++.++.++||+.+..|+.++.+++|+++.|+|+|++++++.|++++|+++||++|+++++++++++++
T Consensus 313 Vep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~la~~~ 392 (430)
T 4aec_A 313 VEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRP 392 (430)
T ss_dssp EEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHTTSG
T ss_pred EEeCCCcHhhCCCccceeehhccCCCCcHHHHHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHHHHhc
Confidence 99999998888888888899999888888888999999999999999999999999999999999999999999998776
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..++++||+|+||+|.||+++.+|+++.+..+.++|+
T Consensus 393 ~~~g~~VV~Il~d~G~rylst~~~~~~~~~~~~~~~~ 429 (430)
T 4aec_A 393 ENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429 (430)
T ss_dssp GGTTCEEEEEECBBGGGGTTSHHHHHHHHHC------
T ss_pred CCCcCeEEEEECCCCccccchhhhhhhhhhhhcCccc
Confidence 5578999999999999999999999999999998886
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-61 Score=425.58 Aligned_cols=276 Identities=52% Similarity=0.896 Sum_probs=252.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++||...||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++..+
T Consensus 50 fK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 129 (334)
T 3tbh_A 50 VKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129 (334)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCC
Confidence 89999999999999999999985446999999999999999999999999999999999999999999999999997545
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.++++|++||+||.|+..||.|+++||++|+.+.||+||+|+|+|||++|++.++|+.+|+++||+
T Consensus 130 ~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vig 209 (334)
T 3tbh_A 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVA 209 (334)
T ss_dssp HHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEE
T ss_pred chHHHHHHHHHHHhCCCEEECCccCChhHHHHHHHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEE
Confidence 88899999999888778999999999998888999999999999977899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++.++.+++++.+..|+.++++++|+++.|+|+|++++++.|++++|+++||+||+++++++++++++
T Consensus 210 Ve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~~~~~ 289 (334)
T 3tbh_A 210 VEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERP 289 (334)
T ss_dssp EEETTSCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHSG
T ss_pred EeeCCchHhhCCCcCCeecCCCCCCcCCHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhc
Confidence 99999998887777778889999888888888999999999999999999999999999999999999999999998765
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTF 276 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~ 276 (278)
..++++||+|+|++|+||+|+.+|++.+.+..+++.
T Consensus 290 ~~~g~~Vv~v~t~~g~ky~~~~~~~~~~~~~~~~~~ 325 (334)
T 3tbh_A 290 EMEGKTIVTVIPSFGERYLSTTLYRSVRDEVSSLPV 325 (334)
T ss_dssp GGTTCEEEEEECBBGGGGTTSGGGTHHHHC------
T ss_pred cCCcCeEEEEECCCCccccCchhhhhhHHHhhhcch
Confidence 347889999999999999999999999998887764
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=414.46 Aligned_cols=277 Identities=81% Similarity=1.259 Sum_probs=255.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++||.++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++..+
T Consensus 45 fK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 124 (322)
T 1z7w_A 45 VKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124 (322)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 89999999999999999999987789999999999999999999999999999999999999999999999999997445
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.++++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|.++||+
T Consensus 125 ~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vig 204 (322)
T 1z7w_A 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYG 204 (322)
T ss_dssp HHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEE
Confidence 78899999999988768899999999998778999999999999976799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..+++.++.+++++.+..|+.+..+++|+++.|+|+|++++++.|++++|+++||+||++++++++++++.
T Consensus 205 ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~~~~~ 284 (322)
T 1z7w_A 205 VEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRP 284 (322)
T ss_dssp EEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSG
T ss_pred EecCCCccccCCCCCCcccCcCcCCCCChhhhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHHHhc
Confidence 99999988877767777788998877788888889999999999999999999999999999999999999999987764
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccccc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 277 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 277 (278)
..++++||+|+|++|.||+++.+|++|+...+.+.++
T Consensus 285 ~~~~~~vv~i~tg~g~k~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1z7w_A 285 ENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFE 321 (322)
T ss_dssp GGTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTCCCC
T ss_pred CCCCCeEEEEECCCCcccccchhhhHHHHhccccccc
Confidence 3467899999999999999999999999888777554
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-58 Score=404.99 Aligned_cols=268 Identities=55% Similarity=0.967 Sum_probs=235.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++|+ ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+
T Consensus 46 fK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~ 124 (313)
T 2q3b_A 46 VKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADG 124 (313)
T ss_dssp THHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCC
Confidence 8999999999999999998887 479999999999999999999999999999999999999999999999999997445
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.+..+++++|+||.++..||.|+++||++|++++||+||+|+|+||+++|++.++|+.+|.++||+
T Consensus 125 ~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ 204 (313)
T 2q3b_A 125 MSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVA 204 (313)
T ss_dssp HHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEE
Confidence 78899999999988754488999999998667899999999999966799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..++...+.+++++.+..|+.+....+|+++.|+|+|+.++++.|++++|+++||+||++++++++++++.
T Consensus 205 ve~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~ 284 (313)
T 2q3b_A 205 VEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRP 284 (313)
T ss_dssp EEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTCG
T ss_pred EeeCCCccccCCCCCCcccCCcCCCCCChhhhHhhccEEEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHHHHhc
Confidence 99999988765555667788888777788788889999999999999999999999999999999999999999987765
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
..++++||+++|++|.||+++.+|++|++
T Consensus 285 ~~~~~~vv~v~~~~g~ky~~~~~~~~~~~ 313 (313)
T 2q3b_A 285 ENAGKLIVVVLPDFGERYLSTPLFADVAD 313 (313)
T ss_dssp GGTTCEEEEEECBBSGGGC----------
T ss_pred CCCCCEEEEEECCCCcccccchhhhhhhC
Confidence 34678999999999999999999998864
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=403.00 Aligned_cols=267 Identities=55% Similarity=0.895 Sum_probs=238.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++|+ ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++..+
T Consensus 41 fK~R~a~~~i~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 119 (316)
T 1y7l_A 41 VKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119 (316)
T ss_dssp THHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred hHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 8999999999999999998887 579999999999999999999999999999999999999999999999999997445
Q ss_pred hHHHHHHHHHHHHhCCCc-cccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-CCcEE
Q 023695 81 MKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKL 158 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~v 158 (278)
++++.+.+++++++.++. ++++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+ |.+||
T Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~v 199 (316)
T 1y7l_A 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITS 199 (316)
T ss_dssp HHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEE
T ss_pred HHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEE
Confidence 888999999999887566 8899999999877789999999999996669999999999999999999999998 99999
Q ss_pred EEEecCCCCcccC---CC---CCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHH
Q 023695 159 YGIEPTESPVLSG---GK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232 (278)
Q Consensus 159 igV~~~~~~~~~~---~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa 232 (278)
|+|||++++.+.. ++ ..++.+++++.+..|+.++.+.+|+++.|+|+|+.++++.|++++|+++||+||+++++
T Consensus 200 i~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa 279 (316)
T 1y7l_A 200 VAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAA 279 (316)
T ss_dssp EEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHH
T ss_pred EEEecCCCccccccccCCccCCCCcccCcCCCCCCCchhhHhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHH
Confidence 9999999976542 21 23556788887777888888899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHH
Q 023695 233 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 268 (278)
Q Consensus 233 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 268 (278)
+++++++...++++||+|+|++|.||+++.+|++|.
T Consensus 280 ~~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~ 315 (316)
T 1y7l_A 280 ADRLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315 (316)
T ss_dssp HHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC----
T ss_pred HHHHHHhcCCCCCeEEEEECCCCcccCCcccccccc
Confidence 999887653367899999999999999999999774
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-57 Score=395.14 Aligned_cols=260 Identities=43% Similarity=0.759 Sum_probs=235.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.++|+ ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+
T Consensus 40 fK~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~ 118 (303)
T 2v03_A 40 VKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG 118 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTH
T ss_pred cHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCC
Confidence 8999999999999999998887 579999999999999999999999999999999999999999999999999997556
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.+++ |++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|.++||+
T Consensus 119 ~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vig 197 (303)
T 2v03_A 119 MEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVG 197 (303)
T ss_dssp HHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEE
Confidence 889999999998885567 9999999998667999999999999966699999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+.. +++++.+..|..++++++|+++.|+|+|+.++++.|++++|+++||+||+++++++++.++.
T Consensus 198 ve~~~~~~~~~-------~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~ 270 (303)
T 2v03_A 198 LQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN 270 (303)
T ss_dssp EEECTTCCCTT-------CCCCCGGGCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHS
T ss_pred EcCCCCccccc-------CCcCCCCCCCcccchHHCCEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHC
Confidence 99999987653 56676666677778889999999999999999999999999999999999999999988764
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHh
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEA 271 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 271 (278)
++++||+|+|++|.||+++.+|++|+.+.
T Consensus 271 --~~~~vv~i~tg~~~ky~~~~~~~~~~~~~ 299 (303)
T 2v03_A 271 --PDAVVVAIICDRGDRYLSTGVFGEEHFSQ 299 (303)
T ss_dssp --TTCEEEEEECBBSGGGGGGTTTCC-----
T ss_pred --CCCeEEEEECCCCcccccchhcHHHHHhc
Confidence 67899999999999999999999887654
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=401.70 Aligned_cols=260 Identities=37% Similarity=0.621 Sum_probs=235.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++|+ ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+
T Consensus 52 fK~R~a~~~l~~a~~~g~l~~~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 130 (325)
T 3dwg_A 52 IKDRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGG 130 (325)
T ss_dssp TTHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTT
T ss_pred hHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCC
Confidence 8999999999999999999887 579999999999999999999999999999999999999999999999999997657
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++.++++|++||+||.++..||.|+++||++|++ .||+||+|+|+|||++|++.++|+.+|.++||+
T Consensus 131 ~~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g~~t~~~Ei~~q~~-~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vig 209 (325)
T 3dwg_A 131 SNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLP-EITHFVAGLGTTGTLMGTGRFLREHVANVKIVA 209 (325)
T ss_dssp HHHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEecCchHHHHHHHHHHHHhCCCCEEEE
Confidence 8999999999999876699999999999866899999999999995 499999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+. .+++++.+..|+.++++++|+++.|+|+|++++++.|++++|+++||+||++++++++++++.
T Consensus 210 Ve~~~~~~~~-------~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~~~~~ 282 (325)
T 3dwg_A 210 AEPRYGEGVY-------ALRNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGA 282 (325)
T ss_dssp EEEECCGGGG-------CCSSGGGCCCCTTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCcchh-------ccCcccCCcCcccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHHHHHh
Confidence 9999997662 345666666777888899999999999999999999999999999999999999999987654
Q ss_pred CCCCCe--EEEEecCCCcCCcchhhcHHHHH
Q 023695 241 ENAGKL--IVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 241 ~~~~~~--vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
..++++ ||+|+|++|.||+|+.+|++...
T Consensus 283 ~~~g~~~~Vv~i~~g~g~ky~~~~~~~~~~~ 313 (325)
T 3dwg_A 283 LAAGERADIALVVADAGWKYLSTGAYAGSLD 313 (325)
T ss_dssp HHHTCCEEEEEEECBBGGGGGGGTTTSSCHH
T ss_pred ccCCCCCeEEEEECCCCccccCchhhcCCcc
Confidence 224566 99999999999999966665433
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-57 Score=402.61 Aligned_cols=267 Identities=42% Similarity=0.771 Sum_probs=244.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++|| ++||++||||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++..+
T Consensus 57 fKdR~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 135 (343)
T 2pqm_A 57 VKDRVGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKG 135 (343)
T ss_dssp THHHHHHHHHHHHHHHTSSCTT-CEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred hHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCC
Confidence 8999999999999999998887 479999999999999999999999999999999999999999999999999997445
Q ss_pred hHHHHHHHHHHHHhCCCc-cccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
++++.+.+++++++.+.. ++++||+||.++..||.+++ ||++|+++.||+||+|+|+||+++|++.++|+.+|.++||
T Consensus 136 ~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vi 214 (343)
T 2pqm_A 136 MPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKII 214 (343)
T ss_dssp HHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEE
Confidence 788999999999887555 67899999998778999999 9999997679999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|||++++.+..++..++.+++++.+..|+.+...++|+++.|+|+|+.++++.|++++|+++||+||++++++++++++
T Consensus 215 gVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~ 294 (343)
T 2pqm_A 215 AVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEK 294 (343)
T ss_dssp EEEEGGGCTTTTCCCCCCCCTTCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTS
T ss_pred EEecCCCcccccCCCCCeecCccCCCCCCHHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHHHHh
Confidence 99999998887666667778899877778888888999999999999999999999999999999999999999998876
Q ss_pred CCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 240 PENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 240 ~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
...++++||+|+|++|.||+++.+|++|.+
T Consensus 295 ~~~~~~~vv~i~tg~g~ky~~~~~~~~~~~ 324 (343)
T 2pqm_A 295 PENEGKTIVIIVPSCGERYLSTDLYKIKDE 324 (343)
T ss_dssp GGGTTCEEEEEECBBGGGGTTSSTTTSCCC
T ss_pred cCCCCCeEEEEEcCCCccccchhhhhhHhh
Confidence 533688999999999999999999988764
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-56 Score=391.56 Aligned_cols=262 Identities=52% Similarity=0.869 Sum_probs=239.0
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCe--EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGES--VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 78 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~--~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 78 (278)
||||++.+++.++.++|.++|+ + +||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++..
T Consensus 39 fK~R~a~~~l~~a~~~g~~~~g-~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 39 IKDRPAWYMIKDAEERGILRPG-SGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp TTHHHHHHHHHHHHHTTSCCTT-SCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-CccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 8999999999999999998887 5 799999999999999999999999999999999999999999999999999975
Q ss_pred CChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEE
Q 023695 79 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 158 (278)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~v 158 (278)
.+++++.+.+++++++ ++++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|.+||
T Consensus 118 ~~~~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~v 196 (304)
T 1ve1_A 118 RRMLAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKV 196 (304)
T ss_dssp THHHHHHHHHHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEE
T ss_pred CCHHHHHHHHHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEE
Confidence 4488999999999887 578899999999985555899999999999667999999999999999999999999999999
Q ss_pred EEEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHh
Q 023695 159 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 238 (278)
Q Consensus 159 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~ 238 (278)
|+|||++++.+..+++.++.+++++.+..|+.+.+.++|+++.|+|+|+.++++.|++++|+++||+||+++++++++++
T Consensus 197 i~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~ 276 (304)
T 1ve1_A 197 IAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVAR 276 (304)
T ss_dssp EEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCccccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEECHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHHHH
Confidence 99999999888766666677889888777888888899999999999999999999999999999999999999999876
Q ss_pred cCCCCCCeEEEEecCCCcCCcchhhcH
Q 023695 239 RPENAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 239 ~~~~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
+. .++++||+|+|++|.||+++.+|+
T Consensus 277 ~~-~~~~~vv~i~tg~g~ky~~~~~~~ 302 (304)
T 1ve1_A 277 EL-GPGKRVACISPDGGWKYLSTPLYA 302 (304)
T ss_dssp HH-CTTCEEEEEECBBSGGGTTSTTTC
T ss_pred hc-CCCCeEEEEECCCCccCCCcccCC
Confidence 53 367899999999999999985665
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=395.21 Aligned_cols=262 Identities=56% Similarity=0.924 Sum_probs=209.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.++|| ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++...+
T Consensus 44 fK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 122 (308)
T 2egu_A 44 VKDRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122 (308)
T ss_dssp THHHHHHHHHHHHHHTTCCCTT-CEEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred hHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCC
Confidence 8999999999999999998887 579999999999999999999999999999999999999999999999999997445
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. ++++++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|.+|||+
T Consensus 123 ~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vig 201 (308)
T 2egu_A 123 MRGAIAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYA 201 (308)
T ss_dssp HHHHHHHHHHHHHHH-CCBCC--------------CHHHHHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHHC-cCCcCCcCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEE
Confidence 788999999998886 4588999999998678999999999999976799999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++.+..++...+.+++++.+..|+.+....+|+++.|+|+|+.++++.|++++|+++||+||+++++++++++++
T Consensus 202 ve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~ 281 (308)
T 2egu_A 202 VEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKEL 281 (308)
T ss_dssp EEECC-----------------------CCCCCCSCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEEEECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHhc
Confidence 99999987776555666778888776677777888999999999999999999999999999999999999999987765
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcH
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFE 265 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~ 265 (278)
.++++||+|+|++|.||+++.+|+
T Consensus 282 -~~~~~vv~i~tg~g~ky~~~~~~~ 305 (308)
T 2egu_A 282 -GKGKKVLAIIPSNGERYLSTPLYQ 305 (308)
T ss_dssp -CTTCEEEEEECBBGGGGTTSSTTC
T ss_pred -CCCCeEEEEECCCCcccccchhcc
Confidence 467899999999999999987763
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-55 Score=399.13 Aligned_cols=273 Identities=38% Similarity=0.619 Sum_probs=239.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.++|+ ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.++...+
T Consensus 140 fKdR~a~~~i~~a~~~G~l~~g-~tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~ 218 (435)
T 1jbq_A 140 VKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNAR 218 (435)
T ss_dssp THHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC---
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCC
Confidence 8999999999999999999887 479999999999999999999999999999999999999999999999999986434
Q ss_pred hHH---HHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+++ ..+.+++++++.++.|+++||+|+.|+..||.++++||++|+++.+|+||+|+|+|||++|++.+||+..|+++
T Consensus 219 ~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vr 298 (435)
T 1jbq_A 219 FDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCR 298 (435)
T ss_dssp ----CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHHHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCE
Confidence 543 45778888888767889999999988889999999999999976799999999999999999999999999999
Q ss_pred EEEEecCCCCccc-----CCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHH
Q 023695 158 LYGIEPTESPVLS-----GGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232 (278)
Q Consensus 158 vigV~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa 232 (278)
||+|||.+++.+. .+....+.+++++.+.++..++...+|+++.|+|+|++++++.|++++||++||+||+++++
T Consensus 299 VigVep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaa 378 (435)
T 1jbq_A 299 IIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAV 378 (435)
T ss_dssp EEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred EEEEecCCchhhchhhhhcCCCcceeecccccCccchhhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHH
Confidence 9999999986542 12334456778887766766777889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhhccc
Q 023695 233 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMT 275 (278)
Q Consensus 233 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~ 275 (278)
+++++++. .++++||+|+|++|.||+++.++++|+.+.+.+.
T Consensus 379 a~~~~~~~-~~g~~VV~iltd~g~ky~~~~~~~~w~~~~~~~~ 420 (435)
T 1jbq_A 379 AVKAAQEL-QEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLK 420 (435)
T ss_dssp HHHHGGGC-CTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC-
T ss_pred HHHHHHHc-CCCCeEEEEEcCCcccccchhhccHHHHhcCCCC
Confidence 99988763 3678999999999999999999999988765543
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=384.90 Aligned_cols=256 Identities=53% Similarity=0.810 Sum_probs=234.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+++++|.++++ ||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++..+
T Consensus 46 fK~R~a~~~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 122 (303)
T 1o58_A 46 VKDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122 (303)
T ss_dssp TTHHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred hHHHHHHHHHHHHHHcCCCCCC---EEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCC
Confidence 8999999999999999987653 8999999999999999999999999999999999999999999999999997445
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCC-cEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~-~~vi 159 (278)
++++.+.+++++++. +++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|. +|||
T Consensus 123 ~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vi 201 (303)
T 1o58_A 123 MKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIV 201 (303)
T ss_dssp HHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEE
T ss_pred HHHHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEE
Confidence 889999999998886 68889999999987779999999999999666999999999999999999999999999 9999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|||++++.+..+++.++.+++++.+..|+.++..++|+++.|+|+|+.++++.|++++|+++||+||++++++++++++
T Consensus 202 gve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~ 281 (303)
T 1o58_A 202 AVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQK 281 (303)
T ss_dssp EEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCccccCCCCCCeecCcCCCCCcCHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHH
Confidence 99999998887777777778898877777778888999999999999999999999999999999999999999998876
Q ss_pred CCCCCCeEEEEecCCCcCCcch
Q 023695 240 PENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 240 ~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
. .++++||+|+|++|.||+++
T Consensus 282 ~-~~~~~vv~i~tg~g~ky~~~ 302 (303)
T 1o58_A 282 L-GPDARVVTVAPDHAERYLSI 302 (303)
T ss_dssp S-CTTCCEEEEECBBGGGCTTT
T ss_pred c-CCCCEEEEEECCCCcccccC
Confidence 3 36789999999999999986
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-54 Score=402.73 Aligned_cols=272 Identities=35% Similarity=0.588 Sum_probs=245.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.+++.+|+++|.++|| ++||++|+||||+|+|++|+++|++|+||||++++..|+.+++.|||+|+.++...+
T Consensus 92 ~K~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~ 170 (527)
T 3pc3_A 92 VKDRIGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAA 170 (527)
T ss_dssp TTHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSC
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCC
Confidence 8999999999999999999988 479999999999999999999999999999999999999999999999999986434
Q ss_pred hH---HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
++ .+.+.+++++++.++.+|++||+||.|+..||.++++||++|+++.||+||+|+|+|||++|++.++|..+|+++
T Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~ 250 (527)
T 3pc3_A 171 YDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQ 250 (527)
T ss_dssp TTSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSE
T ss_pred cccHHHHHHHHHHHHHhCCCcEecCCCCCcchHHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCE
Confidence 44 367788889888777889999999988889999999999999976899999999999999999999999999999
Q ss_pred EEEEecCCCCccc-----CCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHH
Q 023695 158 LYGIEPTESPVLS-----GGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232 (278)
Q Consensus 158 vigV~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa 232 (278)
||||||++++.+. .+.+..+.++|++.+..|..+++.++|+++.|+|+|++++++.|+++|||++||+||+++++
T Consensus 251 vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaa 330 (527)
T 3pc3_A 251 IVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHA 330 (527)
T ss_dssp EEEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHH
T ss_pred EEEEecCCcccccchhhcCCCCCceeccccCCCCCCcccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHH
Confidence 9999999997542 22334566889998888888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcc
Q 023695 233 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 274 (278)
Q Consensus 233 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 274 (278)
++++++.. .+++++|+|++++|.||+++.++++|....+.+
T Consensus 331 al~~~~~~-~~~~~vv~i~~d~g~ryls~~~~~~~l~~rg~~ 371 (527)
T 3pc3_A 331 ALEHARKL-KKGQRCVVILPDGIRNYMTKFVSDNWMEARNFK 371 (527)
T ss_dssp HHHHHTTC-CTTCEEEEEECBBGGGGTTTTTSHHHHHHTTSS
T ss_pred HHHHHHHc-CCCCeEEEEEcCcchhhHhhhhcHHHHHhcCCc
Confidence 99988763 478899999999999999999999997664433
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-51 Score=366.34 Aligned_cols=254 Identities=21% Similarity=0.302 Sum_probs=214.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|.+.+. ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.+++ +
T Consensus 55 fK~Rga~~~i~~a~~~g~~~~~-~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~ 131 (346)
T 3l6b_A 55 FKIRGALNAVRSLVPDALERKP-KAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--S 131 (346)
T ss_dssp THHHHHHHHHHTTC-----CCC-SCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--S
T ss_pred cHHHHHHHHHHHHHHhccccCC-CEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 8999999999999987654333 569999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +.+|++|++||.+ +.||.|+++||++|+ +.||+||+|+|+|||++|++.++|+.+|+++||+
T Consensus 132 ~~~~~~~a~~l~~~~-~~~~i~~~~np~~-~~g~~t~~~Ei~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vig 208 (346)
T 3l6b_A 132 DESRENVAKRVTEET-EGIMVHPNQEPAV-IAGQGTIALEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYA 208 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCEECCSSSCHHH-HHHHHHHHHHHHHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence 788999999998886 6889999999987 789999999999999 5899999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC------CCccccccCCCC--CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP------GPHKIQGIGAGF--VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~------~~~~~~gl~~~~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+.+ ..+..+++.... ..+.+..+++|+++.|+|+|+.++++.|++++|+++||+||+
T Consensus 209 Ve~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~g~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~ 288 (346)
T 3l6b_A 209 AEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGV 288 (346)
T ss_dssp EEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCCCTTHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred EecCCCHHHHHHHHcCCccccCCCCCchhhhccCCCcHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHH
Confidence 9999987542 2332 123445555221 223345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 229 AAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 229 a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++++++...+.. .++++||+|+ |||++|+++
T Consensus 289 alaa~~~~~~~~~~~~~~~Vv~i~-sGG~~d~~~ 321 (346)
T 3l6b_A 289 GVAAVLSQHFQTVSPEVKNICIVL-SGGNVDLTS 321 (346)
T ss_dssp HHHHHHSGGGGGSCTTCCEEEEEE-CBCCCCTTG
T ss_pred HHHHHHHhhhhhccCCCCeEEEEc-CCCCCCHHH
Confidence 9999987543332 3567787777 899999997
|
| >4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-50 Score=358.65 Aligned_cols=261 Identities=18% Similarity=0.160 Sum_probs=222.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +
T Consensus 76 fK~Rga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~ 148 (364)
T 4h27_A 76 FKIRGIGHFCKRWAKQGC-----AHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--L 148 (364)
T ss_dssp THHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--S
T ss_pred HHHHHHHHHHHHHHhcCC-----CEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 899999999999999887 789999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-CCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~vi 159 (278)
++++.+.+++++++.++++|++||+||.+ +.||.|+++||++|+++.||+||+|+|+|||++|++.++|+.+ |+++||
T Consensus 149 ~~~a~~~a~~l~~~~~~~~~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vi 227 (364)
T 4h27_A 149 LDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVI 227 (364)
T ss_dssp TTHHHHHHHHHHHHSTTEEEECSSCSHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHHHHhCCCeEEeCCCCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEE
Confidence 78999999999988768999999999988 7899999999999996679999999999999999999999886 789999
Q ss_pred EEecCCCCccc----CCCC-----CCccccccCCCCCc---ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
+|||++++++. .+++ ..+..++|+.+..+ +.+.+++.+..+.|+|+|++++++.|++++||++||+||
T Consensus 228 gVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~a 307 (364)
T 4h27_A 228 AMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACG 307 (364)
T ss_dssp EEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred EEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCCcHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHH
Confidence 99999998663 2332 23445677665432 223356677788999999999999999999999999999
Q ss_pred HHHHHHH-----HHHhcCCCC--CCeEEEEecCCC-cCCcchhhcHHHHHHhh
Q 023695 228 GAAAAAI-----EIAKRPENA--GKLIVVIFPSFG-ERYLSSVLFESVRKEAE 272 (278)
Q Consensus 228 ~a~aa~~-----~~~~~~~~~--~~~vv~i~~~gG-~~~~~~~~~~~~~~~~~ 272 (278)
+++++++ ++.+++..+ +++||+|+ ||| +.+++ .+..|.+..+
T Consensus 308 aalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~-tGG~~~d~~--~l~~~~~~~~ 357 (364)
T 4h27_A 308 AALAAVYSHVIQKLQLEGNLRTPLPSLVVIV-CGGSNISLA--QLRALKEQLG 357 (364)
T ss_dssp HHHHHHHTTHHHHHHHTTSSCSSCCEEEEEE-CBCSSCCHH--HHHHHHHHTT
T ss_pred HHHHHHHhhhhHHhhhccCcCCCCCeEEEEE-CCCCCCCHH--HHHHHHHHhc
Confidence 9999985 566666543 57888888 666 44444 6677766654
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-50 Score=359.23 Aligned_cols=262 Identities=17% Similarity=0.145 Sum_probs=222.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.++.++|. ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.+++ +
T Consensus 76 fKdRga~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 148 (372)
T 1p5j_A 76 FKIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--L 148 (372)
T ss_dssp TTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--C
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--C
Confidence 899999999999998775 789999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-CCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~vi 159 (278)
++++.+.+++++++.++++|++||+||.+ +.||.|+++||++|+++.||+||+|+|+|||++|++.++|+.+ |.++||
T Consensus 149 ~~~a~~~a~~l~~~~~~~~~v~~~~n~~~-~~G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vi 227 (372)
T 1p5j_A 149 LDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVI 227 (372)
T ss_dssp HHHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHHHHhcCCcEEeCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEE
Confidence 89999999999888568899999999988 7899999999999996569999999999999999999999986 889999
Q ss_pred EEecCCCCccc----CCCC-----CCccccccCCCCCc---ccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
+|||++++.+. .+++ ..+.+++|+.+..+ +.+...+.+.++.|+|+|++++++.|++++||++||+||
T Consensus 228 gVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa 307 (372)
T 1p5j_A 228 AMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACG 307 (372)
T ss_dssp EEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred EEecCCChHHHHHHHcCCceecCCCceeecccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechhHH
Confidence 99999987653 2322 13455677765443 223356678899999999999999999999999999999
Q ss_pred HHHHHHHH-----HHhcCC--CCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 228 GAAAAAIE-----IAKRPE--NAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 228 ~a~aa~~~-----~~~~~~--~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
++++++++ +.+++. .++++||+|+|+|+ |+|...|++|.+..+
T Consensus 308 ~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~--~~~~~~~~~~~~~~~ 357 (372)
T 1p5j_A 308 AALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGS--NISLAQLRALKEQLG 357 (372)
T ss_dssp HHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCS--SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCC--CCCHHHHHHHHHHhC
Confidence 99999874 333332 36788999995544 466667888877654
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=351.73 Aligned_cols=260 Identities=21% Similarity=0.173 Sum_probs=219.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|++|||++++..|+++++.+||+|+.+++ +
T Consensus 37 ~K~R~a~~~l~~a~~~g~-----~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~ 109 (318)
T 2rkb_A 37 FKIRGIGHFCQEMAKKGC-----RHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGK--V 109 (318)
T ss_dssp TTHHHHHHHHHHHHHTTC-----CEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--S
T ss_pred HHHHHHHHHHHHHHHcCC-----CEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECC--C
Confidence 899999999999998875 789999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-CCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~vi 159 (278)
++++.+.+++++++. +++|++||+||.+ +.||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+ |.++||
T Consensus 110 ~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi 187 (318)
T 2rkb_A 110 WDEANLRAQELAKRD-GWENVPPFDHPLI-WKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPII 187 (318)
T ss_dssp HHHHHHHHHHHHHST-TEEECCSSCSHHH-HHHHHHHHHHHHHHSSSCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEE
T ss_pred HHHHHHHHHHHHHhc-CCEEeCCCCChhh-ccchhHHHHHHHHhcCCCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEE
Confidence 899999999998874 7899999999988 7899999999999996679999999999999999999999886 889999
Q ss_pred EEecCCCCccc----CCCC-----CCccccccCCCCCcc---cccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
+|||++++++. .+++ ..+.+++|+.+..+. .+.+.+.++++.|+|+|++++++.|++++|+++||+||
T Consensus 188 ~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a 267 (318)
T 2rkb_A 188 AMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACG 267 (318)
T ss_dssp EEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHHCBCCCHHHH
T ss_pred EEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhcCcEEchhHH
Confidence 99999987652 2322 134556777654432 22345678899999999999999999999999999999
Q ss_pred HHHHHHHH-----HHhcCC--CCCCeEEEEecCCCcCCcchhhcHHHHHHh
Q 023695 228 GAAAAAIE-----IAKRPE--NAGKLIVVIFPSFGERYLSSVLFESVRKEA 271 (278)
Q Consensus 228 ~a~aa~~~-----~~~~~~--~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 271 (278)
++++++++ +.+++. .++++||+|+|+|+..+++ .+.++.+.+
T Consensus 268 ~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~--~l~~~~~~~ 316 (318)
T 2rkb_A 268 AALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSR--ELQALKTHL 316 (318)
T ss_dssp HHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHH--HHHHHHHHT
T ss_pred HHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHH--HHHHHHHHh
Confidence 99999873 323332 3678999999555555555 566666554
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-50 Score=357.96 Aligned_cols=252 Identities=18% Similarity=0.189 Sum_probs=219.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++ ++..|+++++.+||+|+.+++
T Consensus 60 ~KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~-- 132 (351)
T 3aey_A 60 FKDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG-- 132 (351)
T ss_dssp TTHHHHHHHHHHHHHTTC-----SEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--
T ss_pred HHHHHHHHHHHHHHhcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--
Confidence 899999999999999887 789999999999999999999999999999998 999999999999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
+++++.+.+++++++. +.+|+++ +||.+ ..||.|+++||++|++..||+||+|+|+|||++|++.++|+.++
T Consensus 133 ~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~ 209 (351)
T 3aey_A 133 NFDDALRLTQKLTEAF-PVALVNS-VNPHR-LEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAK 209 (351)
T ss_dssp CHHHHHHHHHHHHHHS-SEEECST-TCHHH-HHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCS
T ss_pred CHHHHHHHHHHHHHhc-CcEecCC-CCccc-eeeeeeHHHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccC
Confidence 5889999999998887 5788887 78887 78999999999999976699999999999999999999998753
Q ss_pred -CcEEEEEecCCCCcccCCCCC---CccccccCCCCCc-cc----ccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 155 -NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVP-GV----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
.++|++|||.+++++..+++. .+.+++++.+... +. +.+++.++++.|+|+|++++++.|++++|+++||+
T Consensus 210 ~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~eps 289 (351)
T 3aey_A 210 RLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPA 289 (351)
T ss_dssp SCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHH
T ss_pred CCCeEEEEecCCCChhhcCcccCCccchhHhhcCCCCCCHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECch
Confidence 689999999999877544432 2445777654321 11 22567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 226 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
||+++++++++++++. .++++||+|+|++|.||+++.
T Consensus 290 sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 327 (351)
T 3aey_A 290 SAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327 (351)
T ss_dssp HHHHHHHHHHHHHTTCSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCCHHHH
Confidence 9999999999987654 367899999988888998864
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=356.90 Aligned_cols=252 Identities=19% Similarity=0.183 Sum_probs=219.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++ ++..|+++++.+||+|+.+++
T Consensus 62 ~KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~-- 134 (352)
T 2zsj_A 62 FKDRGMTLAISKAVEAGK-----RAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG-- 134 (352)
T ss_dssp TTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--
T ss_pred HHHHHHHHHHHHHHhcCC-----CEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--
Confidence 899999999999999887 789999999999999999999999999999998 999999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
+++++.+.+++++++. +.+|+++ +||.+ ..||.|+++||++|++..||+||+|+|+|||++|++.++|+.++
T Consensus 135 ~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~ 211 (352)
T 2zsj_A 135 TFDDALNIVRKIGENF-PVEIVNS-VNPYR-IEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKIT 211 (352)
T ss_dssp CHHHHHHHHHHHHHHS-SEEECST-TCTHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHHc-CcEECCC-CCcch-hhhHhHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 6889999999998887 5788887 88887 78999999999999976699999999999999999999998753
Q ss_pred -CcEEEEEecCCCCcccCCCCC---CccccccCCCCCc-cc----ccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 155 -NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVP-GV----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
.++||+|||.+++++..+.+. .+.+++++.+... +. +.+++.++++.|+|+|++++++.|++++|+++||+
T Consensus 212 ~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~eps 291 (352)
T 2zsj_A 212 KLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPA 291 (352)
T ss_dssp SCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHH
T ss_pred CCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECch
Confidence 689999999999876544432 2345777655321 11 13466789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 226 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
||+++++++++++++. .++++||+|+|++|.||+++.
T Consensus 292 sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 329 (352)
T 2zsj_A 292 SAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDTA 329 (352)
T ss_dssp HHHHHHHHHHHHHTTCCCSCCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccChHHH
Confidence 9999999999987654 367899999988888999863
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-50 Score=358.06 Aligned_cols=253 Identities=19% Similarity=0.207 Sum_probs=219.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++ ++..|+++++.+||+|+.+++
T Consensus 68 fKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~-- 140 (360)
T 2d1f_A 68 FKDRGMTMAVTDALAHGQ-----RAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG-- 140 (360)
T ss_dssp TTHHHHHHHHHHHHHTTC-----SEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--
T ss_pred HHHHHHHHHHHHHHHCCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--
Confidence 899999999999999887 789999999999999999999999999999998 999999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-----
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----- 154 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~----- 154 (278)
+++++.+.+++++++.++.+++++ +||.+ +.||.++++||++|++..||+||+|+|+||+++|++.++|+.++
T Consensus 141 ~~~~~~~~a~~l~~~~~~~~~i~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~ 218 (360)
T 2d1f_A 141 NFDDCLELARKMAADFPTISLVNS-VNPVR-IEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLID 218 (360)
T ss_dssp CHHHHHHHHHHHHHHCTTEEECST-TCHHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHhcCCeEEcCC-CChhh-hhhHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccc
Confidence 589999999999988755788887 88887 78999999999999976699999999999999999999998753
Q ss_pred -CcEEEEEecCCCCcccCCCCC---CccccccCCCCCc-c----cccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 155 -NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVP-G----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 155 -~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
.++|++|||++++++..+++. .+.+++|+.+... + .+.+++.++++.|+|+|++++++.|++++|+++||+
T Consensus 219 ~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~eps 298 (360)
T 2d1f_A 219 KLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPA 298 (360)
T ss_dssp SCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHH
T ss_pred cCceEEEEecCCCCHHhcCCccCCccchHHHhCCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECch
Confidence 689999999999877544432 2345777655321 1 123467789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 226 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
||+++++++++++++. .++++||+|+|++|.||+++.
T Consensus 299 sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 336 (360)
T 2d1f_A 299 SAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTA 336 (360)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCHHHH
Confidence 9999999999887644 367899999988888999864
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=362.76 Aligned_cols=264 Identities=19% Similarity=0.215 Sum_probs=222.2
Q ss_pred CccHHHHHHHHH-----HHHcCCCCCCC----------------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH
Q 023695 1 MLQKIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 59 (278)
Q Consensus 1 ~K~R~a~~~l~~-----a~~~g~l~~g~----------------~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 59 (278)
||+|++.+++.. ++++|.++||. .+|+++|+||||+|+|++|+++|++|+||||++++.
T Consensus 117 fK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~ 196 (442)
T 3ss7_X 117 IKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARA 196 (442)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCH
T ss_pred cHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCH
Confidence 899999999986 88999999886 489999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC--------CCCE
Q 023695 60 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDA 131 (278)
Q Consensus 60 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~--------~~d~ 131 (278)
.|+.+++.|||+|+.+++ +++++.+.+++++++.+++|+++++ |+.+.+.||.|+++||++|+.+ .||+
T Consensus 197 ~k~~~~r~~GA~Vv~v~~--~~~~a~~~a~~~a~~~~~~~~i~~~-n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~ 273 (442)
T 3ss7_X 197 WKKAKLRSHGVTVVEYEQ--DYGVAVEEGRKAAQSDPNCFFIDDE-NSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLF 273 (442)
T ss_dssp HHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHTCTTEEECCTT-TCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEE
T ss_pred HHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCceeCCCC-ChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCE
Confidence 999999999999999996 6899999999999887668889884 5555689999999999999842 3669
Q ss_pred EEEecCCCccHHHHHHHHHhh-CCCcEEEEEecCCCCccc----CCCC-----------CCccccccCCCCC---ccccc
Q 023695 132 LVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLE 192 (278)
Q Consensus 132 iv~~vG~Gg~~aGi~~~~k~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~ 192 (278)
||+|+|+||+++|++.+||+. +++++||+|||++++++. .+.+ ..+.++||+.+.. .+.+.
T Consensus 274 VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~ 353 (442)
T 3ss7_X 274 VYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAM 353 (442)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHH
Confidence 999999999999999999987 899999999999998642 2222 2334556665432 22344
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC------C-C----CCCeEEEEecCCCcCCcch
Q 023695 193 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP------E-N----AGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 193 ~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~------~-~----~~~~vv~i~~~gG~~~~~~ 261 (278)
++++|+++.|+|+|++++++.|+++|||++||+||+++++++++++.. . . ++++||+++|+|+.++.+
T Consensus 354 ~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~epssaaalAa~~~l~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~~~~~~- 432 (442)
T 3ss7_X 354 ERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEE- 432 (442)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGGGGGGGGHHHHHHHCHHHHHHHTCCHHHHHTCEEEEEECBCTTCCHH-
T ss_pred HhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHHHHHHHHHHHHHHhchhhHHhcCCCcccCCCCeEEEEECCCCCCCHH-
Confidence 688999999999999999999999999999999999999999987631 1 1 167999999777776554
Q ss_pred hhcHHHHH
Q 023695 262 VLFESVRK 269 (278)
Q Consensus 262 ~~~~~~~~ 269 (278)
.+++++.
T Consensus 433 -~~~~~~~ 439 (442)
T 3ss7_X 433 -EMNQYLA 439 (442)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4555544
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=350.08 Aligned_cols=252 Identities=20% Similarity=0.272 Sum_probs=213.9
Q ss_pred CccHHHHHHHHHHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEA-KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~-~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.++.+ ++. ++||++|+||||+|+|++|+++|++|++|||++++..|+++++.|||+|+.+++
T Consensus 56 ~KdRga~~~i~~~~~~~~~-----~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~-- 128 (323)
T 1v71_A 56 FKFRGALNALSQLNEAQRK-----AGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR-- 128 (323)
T ss_dssp THHHHHHHHHTTCCHHHHH-----HCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--
T ss_pred HHHHHHHHHHHHHHHhcCC-----CeEEEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECC--
Confidence 899999999987653 233 579999999999999999999999999999999999999999999999999997
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
+++++.+.+++++++. +++|++||+||.+ +.||.|+++||++|++ .+|+||+|+|||||++|++.++|+.+|+++||
T Consensus 129 ~~~~~~~~a~~l~~~~-~~~~i~~~~n~~~-~~g~~t~~~Ei~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vi 205 (323)
T 1v71_A 129 YKDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVY 205 (323)
T ss_dssp TTTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTHHHHHHHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred CHHHHHHHHHHHHHhc-CCEecCCCCCcch-hhhHhHHHHHHHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEE
Confidence 4567888888888875 6788999999987 6899999999999995 79999999999999999999999999999999
Q ss_pred EEecCCCCccc----CCCC-----CCccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
+|||.+++.+. .+++ ..+.+++++.+.. ++.+.++++|+++.|+|+|+.++++.|++++||++||++|
T Consensus 206 gve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a 285 (323)
T 1v71_A 206 GVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGC 285 (323)
T ss_dssp EEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGG
T ss_pred EEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHHH
Confidence 99999987553 2322 2345677765432 2234468899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHH
Q 023695 228 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 267 (278)
Q Consensus 228 ~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 267 (278)
+++++++++.++ .++++||+|+ +||+..++ .|.++
T Consensus 286 ~alaa~~~~~~~--~~~~~vv~i~-tGg~~~~~--~~~~~ 320 (323)
T 1v71_A 286 LSFAAARAMKEK--LKNKRIGIII-SGGNVDIE--RYAHF 320 (323)
T ss_dssp HHHHHHHHTGGG--GTTCEEEEEE-CBCCCCHH--HHHHH
T ss_pred HHHHHHHHhHHh--cCCCeEEEEe-CCCCCCHH--HHHHH
Confidence 999999988665 3678898888 77774443 44443
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=348.77 Aligned_cols=244 Identities=22% Similarity=0.292 Sum_probs=209.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++. +. ++||++|+||||+|+|++|+++|++|++|||++++..|+++++.+||+|+.+++ +
T Consensus 50 fKdR~a~~~i~~l~--~~-----~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 120 (311)
T 1ve5_A 50 FKARGALSKALALE--NP-----KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--T 120 (311)
T ss_dssp THHHHHHHHHHHSS--SC-----CCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--C
T ss_pred cHHHHHHHHHHHhc--CC-----CeEEEECCCcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999876 22 579999999999999999999999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
++++.+.+++++++. +++|++||+||.+ ..||.|+++||++|+. +.||+||+|+|+|||++|++.++|+.+|.+|
T Consensus 121 ~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~ 198 (311)
T 1ve5_A 121 AKNREEVARALQEET-GYALIHPFDDPLV-IAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTL 198 (311)
T ss_dssp TTTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHHHHhc-CcEecCCCCCcch-hhhccHHHHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCE
Confidence 788888899988875 7899999999988 6899999999999995 5799999999999999999999999999999
Q ss_pred EEEEecCCCCccc----CCCC------CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec
Q 023695 158 LYGIEPTESPVLS----GGKP------GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 224 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p 224 (278)
||+|||++++.+. .+++ ..+..++++.+. .++.+.++++|+++.|+|+|+.++++.|++++|+++||
T Consensus 199 vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep 278 (311)
T 1ve5_A 199 VLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEP 278 (311)
T ss_dssp EEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCG
T ss_pred EEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCCCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEch
Confidence 9999999987652 2332 233455665432 23334567889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCc
Q 023695 225 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 225 ~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 259 (278)
+||+++++++++.++ . +++||+|+ +||+.++
T Consensus 279 ssa~alaa~~~~~~~--~-~~~vv~i~-tgg~~d~ 309 (311)
T 1ve5_A 279 TGALPLAAVLEHGAR--L-PQTLALLL-SGGNRDF 309 (311)
T ss_dssp GGGHHHHHHHHHGGG--S-CSEEEEEE-CBCCCCC
T ss_pred HHHHHHHHHHhhhhc--c-CCEEEEEE-CCCCCCC
Confidence 999999999998776 3 78888888 6777444
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=355.12 Aligned_cols=259 Identities=24% Similarity=0.283 Sum_probs=223.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++|+++|+||||+|+|++|+++|++|++|||++++..|+++++.+||+|+.+++ +
T Consensus 90 fKdRga~~~i~~l~~~~~----~~~vv~assGN~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~ 163 (366)
T 3iau_A 90 FKLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--T 163 (366)
T ss_dssp TTHHHHHHHHHTSCHHHH----HHCEEEECSSHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--S
T ss_pred hHHHHHHHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHHHHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--C
Confidence 899999999988654322 1569999999999999999999999999999999999999999999999999985 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|++||+||.+ +.||.|++.||++|+ +.||+||+|+|+||+++|++.++|..++.++|++
T Consensus 164 ~~~~~~~a~~~~~~~-~~~~i~~~~n~~~-i~g~~t~~~Ei~~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vig 240 (366)
T 3iau_A 164 FDEAQTHALELSEKD-GLKYIPPFDDPGV-IKGQGTIGTEINRQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIG 240 (366)
T ss_dssp HHHHHHHHHHHHHHH-TCEECCSSSSHHH-HHHHHHHHHHHHHHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCChHH-HHHHHHHHHHHHHhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEE
Confidence 899999999998886 7899999999988 699999999999999 6899999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|+|.+++.+. .+.+ ..+..++++.+.. ++.+.++++|+++.|+|+|+.++++.|++++|+++||+||+
T Consensus 241 Ve~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~sa~ 320 (366)
T 3iau_A 241 VEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAV 320 (366)
T ss_dssp EEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred EeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcHHHHH
Confidence 9999998653 2332 1234566664332 34455788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHh
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 271 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 271 (278)
++++++++++++..++++||+|+ |||+..++ .+..+.++.
T Consensus 321 alaa~~~~~~~~~~~g~~Vv~i~-tGgn~d~~--~l~~~~~~~ 360 (366)
T 3iau_A 321 AIAGAAAYCEFYKIKNENIVAIA-SGANMDFS--KLHKVTELA 360 (366)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEE-CBCCCCGG--GHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEEe-CCCCCCHH--HHHHHHHhh
Confidence 99999999887766788999888 77884444 666666654
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=361.90 Aligned_cols=250 Identities=22% Similarity=0.273 Sum_probs=216.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++||++|+||||+++|++|+++|++|+||||.+++..|+++++.+||+|+.+++ +
T Consensus 61 fKdRgA~n~i~~l~~~~~----~~gVV~aSsGNhg~avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~ 134 (514)
T 1tdj_A 61 FKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--N 134 (514)
T ss_dssp STHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--S
T ss_pred HHHHHHHHHHHHHHHhcC----CCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--C
Confidence 899999999998865432 1569999999999999999999999999999999999999999999999999985 7
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +.+|++||+||.+ ++||+|++.||++|+++ +|+||+|+|+||+++|++.++|+.+|.+||||
T Consensus 135 ~dda~~~a~ela~e~-g~~~v~pfdnp~~-iaGqgTig~EI~eQl~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIg 211 (514)
T 1tdj_A 135 FDEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQQDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIA 211 (514)
T ss_dssp HHHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HHHHHHHHHHHHHHCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 899999999998885 7899999999998 78999999999999954 99999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++ ..+.++|++.... ++.+.++++|+++.|+|+|+.++++.|++++|+++||+||+
T Consensus 212 Vep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~ 291 (514)
T 1tdj_A 212 VEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGAL 291 (514)
T ss_dssp EEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHH
T ss_pred EeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHH
Confidence 9999998764 2332 1234466655332 34466889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+++++++++++...++++||+|+ |||+..++
T Consensus 292 alAal~~~~~~~~~~g~~VV~I~-tGgn~d~~ 322 (514)
T 1tdj_A 292 ALAGMKKYIALHNIRGERLAHIL-SGANVNFH 322 (514)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEEC-CCCCCCTT
T ss_pred HHHHHHHHHHhcCCCCCeEEEEE-eCCCCCHH
Confidence 99999998765445788999998 55553343
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-49 Score=348.57 Aligned_cols=248 Identities=20% Similarity=0.198 Sum_probs=210.4
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~a--ssGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+|+|++.+++.+++++|. ++||++ |+||||+|+|++|+++|++|++|||+++ +..|+++++.|||+|+.+++
T Consensus 53 ~K~R~~~~~i~~a~~~G~-----~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~ 127 (325)
T 1j0a_A 53 NKIRKLEYLLGDALSKGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDA 127 (325)
T ss_dssp THHHHHHHHHHHHHHTTC-----SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESC
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCc
Confidence 699999999999999997 679997 9999999999999999999999999999 99999999999999999997
Q ss_pred CCCh---HHHHHHHHHHHHhCCCcc-ccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC
Q 023695 78 AKGM---KGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 153 (278)
Q Consensus 78 ~~~~---~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~ 153 (278)
..+. .++.+.+++++++.+..| +..++.|+.+ ..||.|++.||++|+++.||+||+|+|||||++|+++++|+.+
T Consensus 128 ~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~-~~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~ 206 (325)
T 1j0a_A 128 KDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG-TLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILN 206 (325)
T ss_dssp CSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHH-HTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTT
T ss_pred chhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHH-HHHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcC
Confidence 4332 256778888887764433 4566678877 6789999999999996689999999999999999999999999
Q ss_pred CCcEEEEEecCCCCcccCCCC---CCccccccC-CCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec-cHHH
Q 023695 154 PNIKLYGIEPTESPVLSGGKP---GPHKIQGIG-AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGG 228 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~-~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p-~sg~ 228 (278)
|++|||+|||.+++.+..... .+....+++ .+..++.+.++++|+ +.|+|+|++++++.|++++||++|| |||+
T Consensus 207 ~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~ 285 (325)
T 1j0a_A 207 EDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGK 285 (325)
T ss_dssp CCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHH
T ss_pred CCceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHH
Confidence 999999999999986642110 011122344 334577788899999 9999999999999999999999999 5999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcC
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGER 257 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~ 257 (278)
++++++++++++.. +++||+|+ |||+.
T Consensus 286 a~aa~~~~~~~~~~-~~~Vv~i~-tGG~~ 312 (325)
T 1j0a_A 286 AFYGLVDLARKGEL-GEKILFIH-TGGIS 312 (325)
T ss_dssp HHHHHHHHHHTTCS-CSEEEEEE-CCCHH
T ss_pred HHHHHHHHHHcCCC-CCcEEEEE-CCCch
Confidence 99999999887654 78888888 88873
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=349.47 Aligned_cols=256 Identities=22% Similarity=0.320 Sum_probs=215.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE-EeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV-LTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~-~~~~~~ 79 (278)
||+|++.+++..+. +.+++| ++|+++|+||||+|+|++|+++|++|+||||++++..|+.+|+.+||+|+ .++. .
T Consensus 126 ~K~R~a~~~i~~l~--~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~ 201 (389)
T 1wkv_A 126 VKDRPAVEIISRLS--RRVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA-P 201 (389)
T ss_dssp TTHHHHHHHHHHHT--TTSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTC-S
T ss_pred hHHHHHHHHHHHHH--HHHhcC-CEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEEcCC-C
Confidence 79999999999965 555566 68999999999999999999999999999999999999999999999999 7773 3
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHHHHHHHHHhhCCCc
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNI 156 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~ 156 (278)
+++++.+.+++++++. +.+|++||+||.+++.||++++.||++|+. ..||+||+|+|+||+++|++.+|++.+|.+
T Consensus 202 ~~~da~~~a~~~~~~~-g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~v 280 (389)
T 1wkv_A 202 STVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSI 280 (389)
T ss_dssp SSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcc-CcEecCcCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCC
Confidence 6788888888888774 789999999998888999999999999994 369999999999999999999999999999
Q ss_pred EEEEEecCCCCcccCCCCCCccccccCCCCCcccccccccC-eEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHH
Q 023695 157 KLYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIID-EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 235 (278)
Q Consensus 157 ~vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~-~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~ 235 (278)
|||+|||.+++.+.+ ...+.+ .+..+....+| +.+.|+|+|++++++.|+++|||+++|+||++++++++
T Consensus 281 rvigVe~~~~~~l~G----i~~i~~-----~~~~~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~alaa~~~ 351 (389)
T 1wkv_A 281 RAVLVQPAQGDSIPG----IRRVET-----GMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAK 351 (389)
T ss_dssp EEEEEEECTTCCCTT----CCCGGG-----CCSHHHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHH
T ss_pred eEEEEecCCCCcccc----ccccCC-----cchhhhhheeccEEEEECHHHHHHHHHHHHHHcCCeEChHHHHHHHHHHH
Confidence 999999998875531 111111 12222345567 89999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhh
Q 023695 236 IAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 272 (278)
Q Consensus 236 ~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 272 (278)
+++++..+++++|+++|++|+||++++ .++....+
T Consensus 352 l~~~g~~~~~~vVviltg~G~k~~~~~--~~~~~~~~ 386 (389)
T 1wkv_A 352 KAAEGDLEPGDYVVVVPDTGFKYLSLV--QNALEGAG 386 (389)
T ss_dssp HHHTTCSCSEEEEEEECBBGGGCHHHH--HHHHC---
T ss_pred HHHhcCCCCCCEEEEEcCCCccCHHHH--HHHHHhcC
Confidence 988765455668889999999999863 34444333
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=353.65 Aligned_cols=264 Identities=19% Similarity=0.211 Sum_probs=216.1
Q ss_pred CccHHHHHHHHHHH--HcCC----CC-------CCCe-EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH
Q 023695 1 MLQKIGYSMISDAE--AKGL----IT-------PGES-VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 66 (278)
Q Consensus 1 ~K~R~a~~~l~~a~--~~g~----l~-------~g~~-~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~ 66 (278)
||||++.+++.+++ +.|. +. .+.+ +||++|+||||+|+|++|+++|++|+||||++++..|+++++
T Consensus 76 fK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~ 155 (398)
T 4d9i_A 76 FXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAIL 155 (398)
T ss_dssp STHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH
Confidence 89999999999984 3331 10 1225 899999999999999999999999999999999999999999
Q ss_pred HcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCC-----CC-CCCchhhhhhchHHHHHhhhCCC---CCEEEEecC
Q 023695 67 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ-----FE-NPANPKIHYETTGPELWKGSGGR---IDALVSGIG 137 (278)
Q Consensus 67 ~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~~~g~~t~~~EI~~ql~~~---~d~iv~~vG 137 (278)
.+||+|+.+++ +++++.+.+++++++. +++|++| |+ ||.+.+.||.|+++||++|+++. ||+||+|+|
T Consensus 156 ~~GA~Vv~v~~--~~~~a~~~a~~~~~~~-g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG 232 (398)
T 4d9i_A 156 NLGAECIVTDM--NYDDTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAG 232 (398)
T ss_dssp TTTCEEEECSS--CHHHHHHHHHHHHHHH-TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECS
T ss_pred HcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecC
Confidence 99999999996 7899999999998886 7889986 65 35556899999999999999543 999999999
Q ss_pred CCccHHHHHHHHHhh--CCCcEEEEEecCCCCccc----CCCCC------CccccccCCCCC---cccccccccCeEEEe
Q 023695 138 TGGTITGAGKFLKEK--NPNIKLYGIEPTESPVLS----GGKPG------PHKIQGIGAGFV---PGVLEVNIIDEVVQV 202 (278)
Q Consensus 138 ~Gg~~aGi~~~~k~~--~~~~~vigV~~~~~~~~~----~~~~~------~~~~~gl~~~~~---~~~~~~~~~~~~~~v 202 (278)
+|||++|++.++|+. .+.++||+|||++++++. .+++. .+..++++.+.. .+.+.++++|+++.|
T Consensus 233 ~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~~V 312 (398)
T 4d9i_A 233 VGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISC 312 (398)
T ss_dssp SSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCCCC------CCTTCCCSSCCHHHHHHHHHHCCEEEEE
T ss_pred ccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCCceeccccCCCCCHHHHHHHHHcCCeEEEE
Confidence 999999999999876 478999999999998764 33332 233455554321 122336889999999
Q ss_pred CHHHHHHHHHHHHHhcC----ceeeccHHHHHHHHHHHH---------hcCC-CCCCeEEEEecCCCcCCcchhhcHHHH
Q 023695 203 SSDEAIETAKLLALKEG----LFVGISSGGAAAAAIEIA---------KRPE-NAGKLIVVIFPSFGERYLSSVLFESVR 268 (278)
Q Consensus 203 ~d~e~~~a~~~l~~~~G----i~~~p~sg~a~aa~~~~~---------~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~ 268 (278)
+|+|+.++++.|+++|| |++||+||++++++++++ +++. .++++||+|+ |||+++++ .|.+++
T Consensus 313 ~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~-tGG~~d~~--~~~~~~ 389 (398)
T 4d9i_A 313 QDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVIS-TEGDTDVK--HYREVV 389 (398)
T ss_dssp CTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEE-CBCCSSHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEe-CCCCCCHH--HHHHHH
Confidence 99999999999999999 999999999999999884 3333 3678888888 68997776 566655
Q ss_pred HH
Q 023695 269 KE 270 (278)
Q Consensus 269 ~~ 270 (278)
..
T Consensus 390 ~~ 391 (398)
T 4d9i_A 390 WE 391 (398)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=353.91 Aligned_cols=253 Identities=15% Similarity=0.122 Sum_probs=212.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE--eCCChHHHHHHHHHHHcCCeEEEEeCCCCC-----HH------HHHHHHH
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE--PTSGNTGIGLAFMAAAKQYRLIITMPASMS-----LE------RRIILRA 67 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~--assGN~g~a~A~~a~~~G~~~~vv~p~~~~-----~~------~~~~~~~ 67 (278)
||+|++.++|.+++++|. ++||+ +|+||||+|+|++|+++|++|++|||++++ +. |+.+++.
T Consensus 50 ~K~R~a~~~l~~a~~~g~-----~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~ 124 (341)
T 1f2d_A 50 NKLRKLEYIVPDIVEGDY-----THLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRI 124 (341)
T ss_dssp HHHHHHTTTHHHHHHSCC-----SEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHh
Confidence 799999999999999887 68999 999999999999999999999999999887 33 9999999
Q ss_pred cCCEEEEeCCCCCh---HHHHHHHHHHHHhCCCcc-ccCC-CCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCC
Q 023695 68 FGAELVLTDPAKGM---KGAVQKAEEILAKTPNAY-MLQQ-FENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTG 139 (278)
Q Consensus 68 ~Ga~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~G 139 (278)
|||+|+.+++..+. +.+.+.+++++++.+..+ ++++ |+||.+ ..||.|++.||++|++ ..||+||+|+|||
T Consensus 125 ~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtG 203 (341)
T 1f2d_A 125 MGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTG 203 (341)
T ss_dssp TTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSS
T ss_pred CCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEeCCCcCCCCcc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCch
Confidence 99999999974332 357778888888764334 5678 999998 6789999999999995 4799999999999
Q ss_pred ccHHHHHHHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCCCC--CcccccccccCeEEEeCHHHHHHHHHHH
Q 023695 140 GTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VPGVLEVNIIDEVVQVSSDEAIETAKLL 214 (278)
Q Consensus 140 g~~aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l 214 (278)
||++|++.+||+.+++++||+|||.+++.+..... ..+.+++++.+. .++.+.++++|+++.|+|+|++++++.|
T Consensus 204 gt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l 283 (341)
T 1f2d_A 204 STTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTC 283 (341)
T ss_dssp HHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHH
Confidence 99999999999999999999999999976542111 112234555332 3446678899999999999999999999
Q ss_pred HHhcCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcCCcc
Q 023695 215 ALKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 215 ~~~~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 260 (278)
++++||++|| |||+++++++++++++.. ++++||+|+ |||+..+.
T Consensus 284 ~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~-tGG~~~~~ 330 (341)
T 1f2d_A 284 AEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVH-LGGAPALS 330 (341)
T ss_dssp HHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGG
T ss_pred HHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEEEE-CCchHHhh
Confidence 9999999999 599999999999887653 678888887 88885443
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=346.47 Aligned_cols=251 Identities=19% Similarity=0.181 Sum_probs=209.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~as--sGN~g~a~A~~a~~~G~~~~vv~p~~~~~--------~~~~~~~~~Ga 70 (278)
||+|++.+++.+++++|. ++||++| +||||+|+|++|+++|++|++|||++++. .|+..++.|||
T Consensus 64 ~K~R~~~~~l~~a~~~G~-----~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA 138 (342)
T 4d9b_A 64 NKLRKLEFLVADALREGA-----DTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNT 138 (342)
T ss_dssp THHHHHHHHHHHHHHTTC-----CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTC
T ss_pred hHHHhHHHHHHHHHHcCC-----CEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCC
Confidence 799999999999999997 6899996 79999999999999999999999998773 59999999999
Q ss_pred EEEEeCCCCChHHHH-HHHHHHHHhCCCcccc-CCCCCCCchhhhhhchHHHHHhhhC--CCCCEEEEecCCCccHHHHH
Q 023695 71 ELVLTDPAKGMKGAV-QKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 71 ~v~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~EI~~ql~--~~~d~iv~~vG~Gg~~aGi~ 146 (278)
+|+.+++..+.+++. +.++++.++.+..|++ .++.|+.+ ..||.|++.||++|++ ..||+||+|+|||||++|++
T Consensus 139 ~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~-~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~ 217 (342)
T 4d9b_A 139 QIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALG-AMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLA 217 (342)
T ss_dssp EEEECSCCSSHHHHHHHHHHHHHHTTCCEEECCGGGCSHHH-HHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHH
T ss_pred EEEEECchhhHHHHHHHHHHHHHhcCCceEEeCCCCCChHH-HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHH
Confidence 999999755555555 4567777665333332 34456655 6799999999999996 47999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCCcccCCCC---CCccccccCC-CCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCcee
Q 023695 147 KFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGA-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 222 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~-~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~ 222 (278)
.++|+.+|+++||+|||.+++.+..... .++.+++|+. +..++.+.++++|+++.|+|+|++++++.|++++||++
T Consensus 218 ~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ 297 (342)
T 4d9b_A 218 VGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLL 297 (342)
T ss_dssp HHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999976532111 1233467766 45677788899999999999999999999999999999
Q ss_pred ecc-HHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcCC
Q 023695 223 GIS-SGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERY 258 (278)
Q Consensus 223 ~p~-sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~ 258 (278)
||+ ||+++++++++++++.. ++++||+|+ |||+..
T Consensus 298 epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~-tGGn~~ 334 (342)
T 4d9b_A 298 DPVYTGKAMAGLIDGISQKRFNDDGPILFIH-TGGAPA 334 (342)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSSSSSCEEEEE-CCCTTH
T ss_pred cccHHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCCccc
Confidence 996 99999999999887553 678888888 889843
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-48 Score=343.11 Aligned_cols=253 Identities=16% Similarity=0.187 Sum_probs=206.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE--eCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH--------HHHHHHHcCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE--PTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--------RRIILRAFGA 70 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~--assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~--------~~~~~~~~Ga 70 (278)
||||++.+++.+++++|. ++||+ +|+||||+|+|++|+++|++|++|||++++.. |+++++.|||
T Consensus 50 ~K~R~a~~~l~~a~~~g~-----~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA 124 (338)
T 1tzj_A 50 NKTRKLEYLIPEALAQGC-----DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGA 124 (338)
T ss_dssp HHHHHHHTTHHHHHHTTC-----CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCC
Confidence 799999999999999887 67888 79999999999999999999999999988764 9999999999
Q ss_pred EEEEeCCCCChH---HHHHHHHHHHHhCCCccc-cCC-CCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccH
Q 023695 71 ELVLTDPAKGMK---GAVQKAEEILAKTPNAYM-LQQ-FENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTI 142 (278)
Q Consensus 71 ~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~-~~~-~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~ 142 (278)
+|+.+++..+.. .+.+.+++++++.+..|+ .++ |+||.+ ..||.++++||++|+. ..||+||+|+|||||+
T Consensus 125 ~V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~ 203 (338)
T 1tzj_A 125 DVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLG-GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQ 203 (338)
T ss_dssp EEEECCC-------CHHHHHHHHHHHTTCCEEECCGGGTSSTTT-TTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHH
T ss_pred EEEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeCCCcCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHH
Confidence 999998632211 246777888877644444 455 899998 6799999999999994 4799999999999999
Q ss_pred HHHHHHHHhh-CCCcEEEEEecCCCCcccCCCC---CCccccccCCCC----CcccccccccCeEEEeCHHHHHHHHHHH
Q 023695 143 TGAGKFLKEK-NPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF----VPGVLEVNIIDEVVQVSSDEAIETAKLL 214 (278)
Q Consensus 143 aGi~~~~k~~-~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~----~~~~~~~~~~~~~~~v~d~e~~~a~~~l 214 (278)
+|++.++|+. +|+ |||+|||.+++.+..... .++..++++.+. ..+.+.++++|+++.|+|+|++++++.|
T Consensus 204 ~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l 282 (338)
T 1tzj_A 204 AGMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLC 282 (338)
T ss_dssp HHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHH
Confidence 9999999988 788 999999999975532111 112233344221 2234557788999999999999999999
Q ss_pred HHhcCceeecc-HHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcCCcch
Q 023695 215 ALKEGLFVGIS-SGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 215 ~~~~Gi~~~p~-sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~~ 261 (278)
++++||++||+ ||+++++++++++++.. ++++||+|+ |||++|++.
T Consensus 283 ~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~-tGG~~~~~~ 330 (338)
T 1tzj_A 283 ARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH-LGGVPALNG 330 (338)
T ss_dssp HHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGGG
T ss_pred HHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCCcccccc
Confidence 99999999995 99999999999887653 678888887 899988874
|
| >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=326.18 Aligned_cols=256 Identities=21% Similarity=0.241 Sum_probs=198.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|++.+++..+.++|+ ...|+++|+||||+|+|++|+++|++|+||||+.. ...|+.+++.+||+|+.++.
T Consensus 108 fK~R~a~~~i~~a~~~g~----~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 183 (418)
T 1x1q_A 108 HKINNTLGQALLARRMGK----RRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAA 183 (418)
T ss_dssp TTHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECC
Confidence 899999999999988886 13455689999999999999999999999999852 23678899999999999984
Q ss_pred -CCChHHHHHHHHH-HHHhCCCccc-cCCCCCCCc----hhhhhhchHHHHHhhhC----CCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKAEE-ILAKTPNAYM-LQQFENPAN----PKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~~~~~----~~~g~~t~~~EI~~ql~----~~~d~iv~~vG~Gg~~aGi~ 146 (278)
..+++++.+.+.+ ++++.++.+| ++++.|+.. +..||+|++.||++|+. ..||+||+|+|+||+++|++
T Consensus 184 ~~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~ 263 (418)
T 1x1q_A 184 GSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLF 263 (418)
T ss_dssp TTSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHH
Confidence 3468888887744 5666444444 555554432 12599999999999983 35999999999999999999
Q ss_pred HHHHhh-CCCcEEEEEecCCCCc--------ccCCCCC--------------------CccccccCCCCC---ccccccc
Q 023695 147 KFLKEK-NPNIKLYGIEPTESPV--------LSGGKPG--------------------PHKIQGIGAGFV---PGVLEVN 194 (278)
Q Consensus 147 ~~~k~~-~~~~~vigV~~~~~~~--------~~~~~~~--------------------~~~~~gl~~~~~---~~~~~~~ 194 (278)
.+||+. +|.+|||+|||++++. +..+.+. .+..++|..+.. ...+.+.
T Consensus 264 ~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~ 343 (418)
T 1x1q_A 264 APFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADA 343 (418)
T ss_dssp HHHHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTEEEEBCCC----------------CSBCCHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhc
Confidence 999987 7999999999999742 1122211 122344443211 1223455
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.+++++.|+|+|++++++.|++++||+++|++|++++++++++++. .++++||+++|++|+||+++
T Consensus 344 ~~~~~~~Vsd~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~~~~~~-~~~~~Vv~vlsG~g~kd~~~ 409 (418)
T 1x1q_A 344 GVAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEM-DKDQVVVINLSGRGDKDVTE 409 (418)
T ss_dssp TSEEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHTTTS-CTTCEEEEEECBBGGGTHHH
T ss_pred cCeEEEEECHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHhc-CCCCeEEEEECCCCCCCHHH
Confidence 6789999999999999999999999999999999999999987653 36789999997779999875
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=330.38 Aligned_cols=252 Identities=18% Similarity=0.179 Sum_probs=204.4
Q ss_pred CccHHHHHHHHHHHH---cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEA---KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~---~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~ 76 (278)
||||++.+++..+.+ +|+ +.++|+++||||||+|+|++|+++|++|+||||++ ++..|+.+++.+||+|+.++
T Consensus 162 FKDRga~~~~~~l~~~~~~~~---g~~~Vv~aSsGNtG~AlA~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~ 238 (486)
T 1e5x_A 162 FKDLGMTVLVSQVNRLRKMKR---PVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID 238 (486)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC---CCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CCeEEEEcCCCHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEEC
Confidence 899999888876654 432 23689999999999999999999999999999996 99999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhhC--
Q 023695 77 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN-- 153 (278)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~~-- 153 (278)
+ +++++.+.+++++++. ++++++++ ||.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+||+..
T Consensus 239 g--~~dd~~~~a~~l~~~~-~~~~vns~-N~~~-i~gq~t~~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~ 313 (486)
T 1e5x_A 239 T--DFDGCMKLIREITAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQEL 313 (486)
T ss_dssp S--CHHHHHHHHHHHHHHS-CEEEGGGS-HHHH-HHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHT
T ss_pred C--CHHHHHHHHHHHHhcC-CEEEeCCC-CHHH-HHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhh
Confidence 7 5899999999998886 68888887 7887 78999999999999964 59999999999999999999998764
Q ss_pred ----CCcEEEEEecCCCCccc----CCC----C---CCccccccCCCCCccccc--ccccCe----EEEeCHHHHHHHHH
Q 023695 154 ----PNIKLYGIEPTESPVLS----GGK----P---GPHKIQGIGAGFVPGVLE--VNIIDE----VVQVSSDEAIETAK 212 (278)
Q Consensus 154 ----~~~~vigV~~~~~~~~~----~~~----~---~~~~~~gl~~~~~~~~~~--~~~~~~----~~~v~d~e~~~a~~ 212 (278)
|.++||+|||++++++. .+. + ..+.+++|+.+. |.++. ...+++ ++.|+|+|++++++
T Consensus 314 Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~~-p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~ 392 (486)
T 1e5x_A 314 GLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA 392 (486)
T ss_dssp TSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred ccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCCC-CccHHHHHHHHhccCCeEEEECHHHHHHHHH
Confidence 78999999999887653 232 1 234566666542 22222 223444 99999999999999
Q ss_pred HHHHhcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcchh
Q 023695 213 LLALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 213 ~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 262 (278)
+++++|+++||+||+++++++++++++. .+++++|+++|++|.||+++.
T Consensus 393 -l~~~eGi~~ePssA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~~~v 442 (486)
T 1e5x_A 393 -QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 442 (486)
T ss_dssp -HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHH
T ss_pred -HHHHCCeEEChhHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCHHHH
Confidence 7788999999999999999999988754 367889999999999998853
|
| >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=319.74 Aligned_cols=254 Identities=22% Similarity=0.264 Sum_probs=201.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCC-CC--HHHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLI-EPTSGNTGIGLAFMAAAKQYRLIITMPAS-MS--LERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv-~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~--~~~~~~~~~~Ga~v~~~~ 76 (278)
||||++.+++..+.++|. +.+| ++|+||||+|+|++|+++|++|+||||+. .+ +.|+.+++.+||+|+.++
T Consensus 81 fK~R~a~~~i~~a~~~g~-----~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~ 155 (388)
T 1v8z_A 81 HKTNNAIGQALLAKFMGK-----TRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVN 155 (388)
T ss_dssp THHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCC-----CEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEEC
Confidence 899999999999988886 4455 58999999999999999999999999974 22 467899999999999998
Q ss_pred C-CCChHHHHHHHHH-HHHhCCC-ccccCCCCCCCc----hhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHH
Q 023695 77 P-AKGMKGAVQKAEE-ILAKTPN-AYMLQQFENPAN----PKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGA 145 (278)
Q Consensus 77 ~-~~~~~~~~~~a~~-~~~~~~~-~~~~~~~~~~~~----~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi 145 (278)
. ..+++++.+.+.+ ++++.++ +|.++++.|+.+ +..||.|++.||++|+ +..||+||+|+|+|||++|+
T Consensus 156 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi 235 (388)
T 1v8z_A 156 SGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGI 235 (388)
T ss_dssp STTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHH
Confidence 5 3468888877754 5666545 444567666543 2348999999999999 44599999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCc--------ccCCCC--------------------CCccccccCCCCC---ccccccc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPV--------LSGGKP--------------------GPHKIQGIGAGFV---PGVLEVN 194 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~~---~~~~~~~ 194 (278)
+.+++ .+|.+|||+|||+++.. +..+.+ ..+..+++..... .+.+...
T Consensus 236 ~~~~~-~~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~ 314 (388)
T 1v8z_A 236 FYPFV-NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKI 314 (388)
T ss_dssp HGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHT
T ss_pred HHHHh-hCCCceEEEEccCccccchhhhhHHHhcCCceeccccccccccccccccCCCceeeeccccCCCChhHHHHHhc
Confidence 99988 48999999999998642 111211 1223344433211 1233456
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.+|+++.|+|+|++++++.|++++||+++|++|++++++++++++. .++++||+|+|++|+||+++
T Consensus 315 ~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~-~~~~~vv~i~tg~g~k~~~~ 380 (388)
T 1v8z_A 315 QRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVNLSGRGDKDLDI 380 (388)
T ss_dssp TSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEEEECBBSGGGHHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHhcCCeecccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccCHHH
Confidence 6789999999999999999999999999999999999999988764 36789999998888999884
|
| >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=322.66 Aligned_cols=255 Identities=22% Similarity=0.248 Sum_probs=201.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEeC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTD 76 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~--~~~~~~~~~Ga~v~~~~ 76 (278)
||+|++.+++..+.++|+ +++|+ +|+||||+|+|++|+++|++|+||||+. .+. .|+.+|+.+||+|+.++
T Consensus 85 fK~R~a~~~~~~a~~~g~-----~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~ 159 (396)
T 1qop_B 85 HKTNQVLGQALLAKRMGK-----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH 159 (396)
T ss_dssp THHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCc-----CEEEEecCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEEC
Confidence 899999999999998886 45666 8999999999999999999999999985 433 56789999999999998
Q ss_pred C-CCChHHHHHHHHHH-HHhCCCcc-ccCCCCCCC----chhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHH
Q 023695 77 P-AKGMKGAVQKAEEI-LAKTPNAY-MLQQFENPA----NPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGA 145 (278)
Q Consensus 77 ~-~~~~~~~~~~a~~~-~~~~~~~~-~~~~~~~~~----~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi 145 (278)
. ..+++++.+.+.+. +++.++.+ +++++.|+. ++..||+|++.||++|+ +..||+||+|+|+||+++|+
T Consensus 160 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi 239 (396)
T 1qop_B 160 SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGM 239 (396)
T ss_dssp STTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHH
Confidence 4 34688888877753 66544544 445554443 22348999999999999 45799999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCc--------ccCCCC--------------------CCccccccCCCCC---ccccccc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPV--------LSGGKP--------------------GPHKIQGIGAGFV---PGVLEVN 194 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~~---~~~~~~~ 194 (278)
+.+++ .+|.++||+|||.++.. +..+.+ ..+..++|..+.. ...+.+.
T Consensus 240 ~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~ 318 (396)
T 1qop_B 240 FADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSI 318 (396)
T ss_dssp HGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHT
T ss_pred HHHHh-cCCCCEEEEEeCCCccccchhhHHHHHcCCeeeeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhc
Confidence 99998 48899999999998641 222221 1223344443211 2334466
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 195 IIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 195 ~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.+|+++.|+|+|++++++.|+++|||+++|++|++++++++++++...++++||+++|++|+||+++
T Consensus 319 ~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~~~~~~~vv~i~tg~g~k~~~~ 385 (396)
T 1qop_B 319 GRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFT 385 (396)
T ss_dssp TSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHH
T ss_pred CCeEEEEECHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH
Confidence 7899999999999999999999999999999999999999987764226789999998888999885
|
| >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=314.73 Aligned_cols=255 Identities=22% Similarity=0.265 Sum_probs=189.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~---~~~~~~~~~~Ga~v~~~~~ 77 (278)
||+|++.+++..+.++|+ ..+|+++|+||||+|+|++|+++|++|+||||+... ..|+.+|+.+||+|+.++.
T Consensus 112 fK~R~a~~~~~~a~~~g~----~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~ 187 (422)
T 2o2e_A 112 HKINNVLGQALLARRMGK----TRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQT 187 (422)
T ss_dssp THHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHcCC----CeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECC
Confidence 899999999999988886 145567899999999999999999999999998532 4678999999999999985
Q ss_pred -CCChHHHHHHHHH-HHHhCCCccc-cCCCCCCC----chhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKAEE-ILAKTPNAYM-LQQFENPA----NPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~~~~----~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
..+++++.+.+.+ ++++.++.+| ++++.++. ++..||.+++.||++|+ +..||+||+|+|+||+++|++
T Consensus 188 ~~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~ 267 (422)
T 2o2e_A 188 GSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIF 267 (422)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHH
Confidence 3468888887744 5666445444 55554332 22358999999999997 345999999999999999998
Q ss_pred HHHHhhCCCcEEEEEecCCCC--------cccCCCCC--------------------CccccccCCCC---Ccccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGF---VPGVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~---~~~~~~~~~ 195 (278)
.+++. .|.++||+|||.++. ++..+.+. .+..++|..+. ....+....
T Consensus 268 ~~~~~-~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~ 346 (422)
T 2o2e_A 268 HAFLD-DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAG 346 (422)
T ss_dssp GGGTT-CTTCEEEEEEECC-------------------------------------------------------------
T ss_pred HHHhc-CCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCCCCHHHHHHHHhC
Confidence 88864 789999999999872 23333221 11223343211 122344567
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++++.|+|+|++++++.|+++|||+++|+++++++++++++++. .++++||+++|++|+||+++
T Consensus 347 ~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~esa~A~a~a~~l~~~~-~~~~~vvvilsG~g~kd~~~ 411 (422)
T 2o2e_A 347 RVDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVEL-GRGAVIVVNLSGRGDKDVET 411 (422)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-CTTCEEEEECCSCSSSHHHH
T ss_pred CeeEEEECHHHHHHHHHHHHHHcCCccCchHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCCCCHHH
Confidence 789999999999999999999999999999999999999887653 36789999998889999885
|
| >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=304.49 Aligned_cols=246 Identities=13% Similarity=0.077 Sum_probs=196.7
Q ss_pred CccHHHHHHH---HHHHHcCCCCCCCeEEEEeCCChHHHHHH-HHHHHcCCeEEEEeCC-CCCHHHHHHHHHcCCEE--E
Q 023695 1 MLQKIGYSMI---SDAEAKGLITPGESVLIEPTSGNTGIGLA-FMAAAKQYRLIITMPA-SMSLERRIILRAFGAEL--V 73 (278)
Q Consensus 1 ~K~R~a~~~l---~~a~~~g~l~~g~~~vv~assGN~g~a~A-~~a~~~G~~~~vv~p~-~~~~~~~~~~~~~Ga~v--~ 73 (278)
||||++.+++ .++ +++. .++|+++||||||+|+| .+|+++|++|+||||+ +++..|+.+|+.+||+| +
T Consensus 106 fKdr~a~~l~~~l~~a-~~~~----~~~Iv~atsGNtG~A~A~~~a~~~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v 180 (428)
T 1vb3_A 106 FKDFGGRFMAQMLTHI-AGDK----PVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV 180 (428)
T ss_dssp THHHHHHHHHHHHHHH-TTTC----CEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEE
T ss_pred HHHHHHHHHHHHHHHH-HhcC----CCEEEecCCchHHHHHHHHHhhhcCCeEEEEECCCCCCHHHHHHHHhcCCeEEEE
Confidence 8999999984 445 2332 37899999999999999 5999999999999999 59999999999999999 6
Q ss_pred EeCCCCChHHHHHHHHHHHHh-----CCCccccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccHHHH
Q 023695 74 LTDPAKGMKGAVQKAEEILAK-----TPNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGA 145 (278)
Q Consensus 74 ~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi 145 (278)
.+++ +++++.+.++++.++ ..+.++++++ ||.+ +.||.++++||++|+.+ .||+||+|+|+||+++|+
T Consensus 181 ~v~g--~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-n~~~-~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~ 256 (428)
T 1vb3_A 181 AIDG--DFDACQALVKQAFDDEELKVALGLNSANSI-NISR-LLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAG 256 (428)
T ss_dssp EEES--CHHHHHHHHHHGGGCHHHHHHHTEECCSTT-SHHH-HHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHH
T ss_pred EeCC--CHHHHHHHHHHHHhchhhhhhcCeeeCCCC-CHHH-HHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHHH
Confidence 6664 788898888877642 1255666664 6766 78999999999999964 599999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcc----cCCCCC-----CccccccCCCCCccccc------ccc-----cCeEEEeCHH
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVL----SGGKPG-----PHKIQGIGAGFVPGVLE------VNI-----IDEVVQVSSD 205 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~----~~~~~~-----~~~~~gl~~~~~~~~~~------~~~-----~~~~~~v~d~ 205 (278)
+.+++...|.+|||+|++.++ .+ ..|.+. .+..++|+.+ .|.++. .+. .+..+.|+|+
T Consensus 257 ~~a~~~g~p~~kii~a~~~~~-~l~~~~~~G~~~~~~~~~tis~g~~i~-~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~ 334 (428)
T 1vb3_A 257 LLAKSLGLPVKRFIAATNVND-TVPRFLHDGQWSPKATQATLSNAMDVS-QPNNWPRVEELFRRKIWQLKELGYAAVDDE 334 (428)
T ss_dssp HHHHHTTCCCSEEEEEECSCC-HHHHHHHHSCCCCCCCCCCSSGGGCCS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHH
T ss_pred HHHHHcCCCCCeEEeecCCCh-HHHHHHHcCCcccCCCCCcccchhcCC-CCccHHHHHHHHhcchhhhhCcEEEEECHH
Confidence 999988778889999998763 33 233332 2334555433 222221 222 6789999999
Q ss_pred HHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 206 EAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 206 e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
|+.++++.| +++|+++||+||+++++++++++ +++++|+++|++|.||+++.
T Consensus 335 e~~~a~~~l-~~eGi~~~p~sa~a~aa~~~~~~----~~~~vV~i~tg~~~K~~~~v 386 (428)
T 1vb3_A 335 TTQQTMREL-KELGYTSEPHAAVAYRALRDQLN----PGEYGLFLGTAHPAKFKESV 386 (428)
T ss_dssp HHHHHHHHH-HHTTCCCCHHHHHHHHHHHTTCC----TTCEEEEEECBCGGGGHHHH
T ss_pred HHHHHHHHH-HHCCeEECchHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCHHHH
Confidence 999999999 99999999999999999987654 56789999999999999864
|
| >4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=269.54 Aligned_cols=246 Identities=14% Similarity=0.110 Sum_probs=190.8
Q ss_pred CccHHHHHH---HHHHH-HcCCCCCCCeEEEEeCCChHHH-HHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCC-EE-
Q 023695 1 MLQKIGYSM---ISDAE-AKGLITPGESVLIEPTSGNTGI-GLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGA-EL- 72 (278)
Q Consensus 1 ~K~R~a~~~---l~~a~-~~g~l~~g~~~vv~assGN~g~-a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga-~v- 72 (278)
||||++.++ +.++. ++|. ..+|+++||||||. ++|++|+++|++++|+||++ +++.|+.+|+.+|+ +|
T Consensus 116 FKDRga~~~~~~l~~a~~~~g~----~~~Vv~ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~gganV~ 191 (468)
T 4f4f_A 116 FKDVAMQLLARMMDYVLAQRGE----RATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSSGFSNVH 191 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHTTC----CEEEEEECSSHHHHHHHHHHTTCSSEEEEEEEETTCSCHHHHHHHHCSCCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----CcEEEEECCchHHHHHHHHHHhccCCcEEEEeCCCCCCHHHHHHHHhcCCCeEE
Confidence 899999999 77774 5565 15799999999995 55777999999999999998 99999999999974 54
Q ss_pred -EEeCCCCChHHHHHHHHHHHHhCC-----CccccCCCCCCCchhhhhhchHHHHHhhhCCCCCE---EEEecCCCccHH
Q 023695 73 -VLTDPAKGMKGAVQKAEEILAKTP-----NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA---LVSGIGTGGTIT 143 (278)
Q Consensus 73 -~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~---iv~~vG~Gg~~a 143 (278)
+.+++ +++++.+.+++++++.+ +.+++++ .||.. +.||.|+++||++|+. .+|. |++|+|+||+++
T Consensus 192 vv~v~g--~fdda~~~~k~~~~d~~~~~~~~~~~vns-in~~r-i~GQ~T~~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~ 266 (468)
T 4f4f_A 192 ALSIEG--NFDDCQNLVKGMFNDLEFCDALSLSGVNS-INWAR-IMPQVVYYFTAALSLG-APDRAVSFTVPTGNFGDIF 266 (468)
T ss_dssp EEEEES--CHHHHHHHHHHHHHCHHHHHHHTEEECCT-TSHHH-HGGGHHHHHHHHHHTT-TTSSCEEEEEECSSSHHHH
T ss_pred EeecCC--CHHHHHHHHHHHHhccccccccceEeCCC-CCHHH-HHhHHHHHHHHHHhcc-cCCCCeEEEEEeCCcHHHH
Confidence 66665 79999999988876531 3455665 46666 7899999999999994 7888 999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCccc----CCCC-----CCccccccCCCCCcccccc---------------------
Q 023695 144 GAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPGVLEV--------------------- 193 (278)
Q Consensus 144 Gi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~~~~~--------------------- 193 (278)
|++.+.+...|..|+|+| +++++++. .|.+ ..+..++|.... +.++.+
T Consensus 267 g~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~~Tia~smdi~~-~sN~erl~~~l~~~d~~~~~~~~~~l~ 344 (468)
T 4f4f_A 267 AGYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYEMRGVAQTTSPSMDIQI-SSNFERLLFEAHGRDAAAVRGLMQGLK 344 (468)
T ss_dssp HHHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCCCCSCGGGCCSS-CTTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCceecCCcceeCchhhcCc-cchHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999884444467799999 88887653 2322 223344554331 111110
Q ss_pred -------------ccc--CeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCC
Q 023695 194 -------------NII--DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERY 258 (278)
Q Consensus 194 -------------~~~--~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~ 258 (278)
... ...+.|+|+|+.++++.+++++|+++||++|++++++.++. .++.++|++.|.+|.|+
T Consensus 345 ~~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~~~~g~~vEP~~Ava~aa~~~~~----~~~~~~V~l~Ta~~~Kf 420 (468)
T 4f4f_A 345 QSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKA----SGTAPMVVLATAHPAKF 420 (468)
T ss_dssp HHSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHC----CSSSCEEEEECBCGGGS
T ss_pred hcCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHHHHCCEEECHhHHHHHHHHHHHh----CCCCeEEEEecCCcccc
Confidence 000 13789999999999999999999999999999999998863 25678999999999998
Q ss_pred cch
Q 023695 259 LSS 261 (278)
Q Consensus 259 ~~~ 261 (278)
.+.
T Consensus 421 ~~~ 423 (468)
T 4f4f_A 421 PDA 423 (468)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=270.83 Aligned_cols=253 Identities=13% Similarity=0.053 Sum_probs=188.9
Q ss_pred CccHHHHHHH---HHHH-HcCC-----CCCCCeEEEEeCCChHHHHHHHHH--HHcCCeEEEEeCCC-CCHHHHHHH---
Q 023695 1 MLQKIGYSMI---SDAE-AKGL-----ITPGESVLIEPTSGNTGIGLAFMA--AAKQYRLIITMPAS-MSLERRIIL--- 65 (278)
Q Consensus 1 ~K~R~a~~~l---~~a~-~~g~-----l~~g~~~vv~assGN~g~a~A~~a--~~~G~~~~vv~p~~-~~~~~~~~~--- 65 (278)
||||++.+++ .+++ ++|. ++++ .+|+++||||||.| |++| ++.|++++|+||++ ++..++.+|
T Consensus 123 FKDrga~~~~~~~~~a~~~~g~~~~~~~~~~-~~Iv~ATSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~ 200 (514)
T 1kl7_A 123 FKDVALQFVGNLFEYFLQRTNANLPEGEKKQ-ITVVGATSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTV 200 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCSSSCCC-EEEEEECSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCCC-CEEEECCCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhh
Confidence 8999999994 4443 3462 4444 68999999999999 6666 89999999999997 888776666
Q ss_pred HHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-----CccccCCCCCCCchhhhhhchHHHHHhhh-C---CCCCEEEEec
Q 023695 66 RAFGAELVLTDPAKGMKGAVQKAEEILAKTP-----NAYMLQQFENPANPKIHYETTGPELWKGS-G---GRIDALVSGI 136 (278)
Q Consensus 66 ~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~EI~~ql-~---~~~d~iv~~v 136 (278)
..+|++++.+++ +++++.+.+++++++.+ +.++.++. |+.. +.|+.+.++|+++|+ + +.+|+||+|+
T Consensus 201 ~g~~~~vv~v~g--~fdda~~~vk~l~~~~~~~~~~~~~~~Ns~-N~~r-i~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~ 276 (514)
T 1kl7_A 201 PDENVQTLSVTG--TFDNCQDIVKAIFGDKEFNSKHNVGAVNSI-NWAR-ILAQMTYYFYSFFQATNGKDSKKVKFVVPS 276 (514)
T ss_dssp CCTTEEEEEESS--CHHHHHHHHHHHHHCSSCC--CCBCCCCSC-CHHH-HHHHHHHHHHHHHHHHSSSSCCCEEEEEEC
T ss_pred cCCCEEEEEcCC--CHHHHHHHHHHHHhcccccccceeEeeCCC-CHhH-HhhHHHHHHHHHHHHhhhcCCCCcEEEEEC
Confidence 345667777775 79999999999987642 22333332 4433 679999999999998 4 3589999999
Q ss_pred CCCccHHHHHHHHHhhCCCcEEEEEecCCCCccc----CCCCC------CccccccCCCCCcccccc---cccC------
Q 023695 137 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG------PHKIQGIGAGFVPGVLEV---NIID------ 197 (278)
Q Consensus 137 G~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~~------~~~~~gl~~~~~~~~~~~---~~~~------ 197 (278)
|+||++.|++...+...|.+|+|+|+|++ +++. .|... .+...+|... .|.++.+ ...+
T Consensus 277 GngG~i~a~~~ak~~G~p~~rli~v~~~n-~~l~~~~~~G~~~~~~~~~~Tis~amdi~-~psn~er~l~~l~~~~~~~~ 354 (514)
T 1kl7_A 277 GNFGDILAGYFAKKMGLPIEKLAIATNEN-DILDRFLKSGLYERSDKVAATLSPAMDIL-ISSNFERLLWYLAREYLANG 354 (514)
T ss_dssp SSSHHHHHHHHHHHHTCCCCCEEEEECSC-CHHHHHHHHSEEECCSSCCCCSCGGGCCS-SCTTHHHHHHHHHHHHTSTT
T ss_pred CchHHHHHHHHHHHcCCCCCEEEEEeCCc-chHHHHHhcCCccCCCCCCCeechhhhcC-CCCcHHHHHHHHhccccccc
Confidence 99999999987555446788999999998 4443 23211 2222333221 2333321 1111
Q ss_pred ------------------------------------eEEEeCHHHHHHHHHHHHHhc----CceeeccHHHHHHHHHHHH
Q 023695 198 ------------------------------------EVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIEIA 237 (278)
Q Consensus 198 ------------------------------------~~~~v~d~e~~~a~~~l~~~~----Gi~~~p~sg~a~aa~~~~~ 237 (278)
.++.|+|+|+.++++.+++++ |+++||+||++++++.++.
T Consensus 355 ~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~~ 434 (514)
T 1kl7_A 355 DDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLI 434 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEcccHHHHHHHHHHHH
Confidence 489999999999999999999 9999999999999999988
Q ss_pred hcCCCCCCeEEEEecCCCcCCcch
Q 023695 238 KRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 238 ~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++..+++++|++.|++|.||.+.
T Consensus 435 ~~g~~~~~~vV~l~Ta~~~Kf~~~ 458 (514)
T 1kl7_A 435 AKDNDKSIQYISLSTAHPAKFADA 458 (514)
T ss_dssp HHHCCTTSEEEEEECBCGGGGHHH
T ss_pred HhccCCCCcEEEEECCchhhhHHH
Confidence 764235678999999999998764
|
| >3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=258.23 Aligned_cols=247 Identities=12% Similarity=0.033 Sum_probs=187.0
Q ss_pred CccHHHHHH---HHHHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCC-CCHHHHHHHHHcCC---E
Q 023695 1 MLQKIGYSM---ISDAEA-KGLITPGESVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPAS-MSLERRIILRAFGA---E 71 (278)
Q Consensus 1 ~K~R~a~~~---l~~a~~-~g~l~~g~~~vv~assGN~g~a~A~~a~-~~G~~~~vv~p~~-~~~~~~~~~~~~Ga---~ 71 (278)
||||++.++ +.++.+ +|. ..+|+++||||||.|+|++++ +.|++++|+||++ ++..|+.+|+.+|+ +
T Consensus 129 FKDRga~~~~~ll~~a~~~~g~----~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~k~~qm~~~Ga~nv~ 204 (487)
T 3v7n_A 129 FKDMAMQLLGNLFEYTLAKHGE----TLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAFQTAQMYSLQDPNIF 204 (487)
T ss_dssp THHHHHHHHHHHHHHHHHTTTC----CEEEEEECSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHHHHHHHHTCCCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----CcEEEEeCChHHHHHHHHHHHhccCCeEEEEECCCCCCHHHHHHHHhcCCCcEE
Confidence 899999998 788854 454 246999999999999887776 8999999999997 99999999999998 7
Q ss_pred EEEeCCCCChHHHHHHHHHHHHhC-----CCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHH
Q 023695 72 LVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTIT 143 (278)
Q Consensus 72 v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~a 143 (278)
++.+++ +++++.+.++++.++. -+.++++++ ||.. +.|+.+.++|+..|+. +.+|+|++|+|+||+++
T Consensus 205 vv~v~G--~fDda~~~vk~~~~d~~~~~~~~l~~vns~-Np~r-i~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~ 280 (487)
T 3v7n_A 205 NLAVNG--VFDDCQDIVKAVSNDHAFKAQQKIGTVNSI-NWAR-VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVC 280 (487)
T ss_dssp EEEEES--CHHHHHHHHHHHHTCHHHHHHTTEECCSTT-CHHH-HHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHH
T ss_pred EEEECC--CHHHHHHHHHHhhhchHHHhhcCeeeeCCC-CHHH-HHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHH
Confidence 888876 7899999998887621 145667765 6766 7899988888888873 35999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCccc----CCCC-----CCcc---ccccCCCCCcccccc------------------
Q 023695 144 GAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHK---IQGIGAGFVPGVLEV------------------ 193 (278)
Q Consensus 144 Gi~~~~k~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~---~~gl~~~~~~~~~~~------------------ 193 (278)
|++.+.+...|.+|+|++++++ +.+. .|.+ ..+. ..+|.... |.++.+
T Consensus 281 g~~~A~~mGlp~~rli~a~~~n-~~l~~~~~~G~~~~~~~~~Ti~t~s~smdI~~-psn~er~l~~l~~~d~~~~~~~m~ 358 (487)
T 3v7n_A 281 AGHIARMMGLPIEKLVVATNEN-DVLDEFFRTGAYRVRSAQDTYHTSSPSMDISK-ASNFERFVFDLLGRDPARVVQLFR 358 (487)
T ss_dssp HHHHHHHTTCCEEEEEEECTTC-HHHHHHHHHSEEEC-------------------CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCC-cHHHHHHHcCCcccCCCCCccccCCchhccCC-CccHHHHHHHHhCCCHHHHHHHHH
Confidence 9988766545777999999998 4432 2322 1122 33333221 111100
Q ss_pred --------------------cccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 023695 194 --------------------NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPS 253 (278)
Q Consensus 194 --------------------~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~ 253 (278)
......+.|+|+|+.++++.+++++|+++||+||++++++.++.+ ++.++|++.|.
T Consensus 359 ~l~~~g~~~l~~~~~~~~~~~~~~~~~~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~----~~~~~V~l~Ta 434 (487)
T 3v7n_A 359 DVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLR----PGVPMVVLETA 434 (487)
T ss_dssp HHHHHSEEETTTTTCTHHHHHTTEEEECCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCC----TTSCEEEEECB
T ss_pred HHHhcCCeecccchhHHHHHhhcceEEEECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhC----CCCcEEEEecC
Confidence 001245789999999999999999999999999999999887532 45678999989
Q ss_pred CCcCCcch
Q 023695 254 FGERYLSS 261 (278)
Q Consensus 254 gG~~~~~~ 261 (278)
++.|+.+.
T Consensus 435 ~p~Kf~~~ 442 (487)
T 3v7n_A 435 QPIKFGES 442 (487)
T ss_dssp CGGGGHHH
T ss_pred CccccHHH
Confidence 99998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.36 Score=35.99 Aligned_cols=96 Identities=22% Similarity=0.157 Sum_probs=64.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCccccCCC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 104 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 104 (278)
.++....|..|..+|...+..|.+++++-. .+.+.+.++..|..++..+... .
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~~--~---------------------- 61 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAAN--E---------------------- 61 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTTS--H----------------------
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCCC--H----------------------
Confidence 467778899999999999999999888844 4567777777888776655321 1
Q ss_pred CCCCchhhhhhchHHHHHhhhC-CCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEe
Q 023695 105 ENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 162 (278)
Q Consensus 105 ~~~~~~~~g~~t~~~EI~~ql~-~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~ 162 (278)
+++++.+ .+.|.+|++++.-....-+...++..+|..+|++-.
T Consensus 62 ---------------~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 62 ---------------EIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp ---------------HHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred ---------------HHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1111110 235788888776544444556677777888877654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.55 Score=40.54 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=47.1
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 11 ~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
.++++...+++|++.+|. .+|..|.+++..|+.+|.+++++.+ ++.|++.++.+|++.+.-.
T Consensus 156 ~~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 156 YKGLKVTDTRPGQWVVIS-GIGGLGHVAVQYARAMGLRVAAVDI---DDAKLNLARRLGAEVAVNA 217 (340)
T ss_dssp HHHHHTTTCCTTSEEEEE-CCSTTHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHcCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 345566788898776665 4588999999999999997666533 5678889999999765543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.57 Score=40.32 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=46.5
Q ss_pred HHH-HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHcCCEEEE
Q 023695 12 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVL 74 (278)
Q Consensus 12 ~a~-~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~-~~~Ga~v~~ 74 (278)
+++ +.+.+++|++.+|+..+|.-|.+++..++..|.+++++.. ++.+++.+ +.+|++.+.
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~~~ 200 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG---GAEKCRFLVEELGFDGAI 200 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCSEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCCEEE
Confidence 344 6778899988788777899999999999999997766643 45677777 788886544
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.53 Score=40.96 Aligned_cols=58 Identities=24% Similarity=0.172 Sum_probs=45.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+...+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~ 218 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG---STGKCEACERLGAKRGIN 218 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEe
Confidence 5677889887777768899999999999999998666543 457788888888875543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.6 Score=40.06 Aligned_cols=58 Identities=28% Similarity=0.290 Sum_probs=45.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+.+++|++.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+..
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~ 191 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETID 191 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4567888877777777899999999999999998766643 467888888889865543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.84 Score=39.23 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=45.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.+ ++.+++.++.+|++.+...
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINA 200 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeC
Confidence 3467888877777776899999999999999998766644 4678888888998765443
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.68 Score=40.43 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=46.3
Q ss_pred HHH-HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 12 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 12 ~a~-~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.++ +.+.+++|.+.+|.. +|..|.+++..|+.+|.+++++.+ ++.+++.++.+|++.+..
T Consensus 179 ~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~ 239 (363)
T 3uog_A 179 FALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSS---SREKLDRAFALGADHGIN 239 (363)
T ss_dssp HHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEec---CchhHHHHHHcCCCEEEc
Confidence 344 567889997766666 899999999999999998776643 457888889999865543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.52 Score=40.82 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=45.6
Q ss_pred HHH-HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~-~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++ +.+.+++|.+.+|...+|..|.+++..++.+|.+++++... ..+++.++.+|++.+.
T Consensus 149 ~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~v~ 209 (342)
T 4eye_A 149 FAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR---TAATEFVKSVGADIVL 209 (342)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEe
Confidence 344 66778888877777777999999999999999987776543 3556677778886554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.98 Score=39.07 Aligned_cols=54 Identities=24% Similarity=0.288 Sum_probs=44.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+...+++|.+.+|...+|.-|.+++..++..|.+++++ .++.+++.++.+|++.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~ 197 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP 197 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence 66788899777777668999999999999999986655 2467888889999987
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.76 Score=39.32 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=47.0
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
++++...+++|.+.+|...+|.-|.+++..|+.+|.+++++. +..+++.++.+|++.+.-.
T Consensus 143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCINY 203 (321)
T ss_dssp HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEET
T ss_pred HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEeC
Confidence 455677889997766665689999999999999999866653 3456888899999865443
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.96 Score=35.79 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEe-------C--CCCCHHHHHHHHHcCCEEE
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITM-------P--ASMSLERRIILRAFGAELV 73 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~a-ssGN~g~a~A~~a~~~G~~~~vv~-------p--~~~~~~~~~~~~~~Ga~v~ 73 (278)
..+...+.+|.+.|. +.||.+ |+|.++..++-.. -|++.++|. | ...+++.++.++..|..|+
T Consensus 30 ~tl~la~era~e~~I-----k~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~ 102 (201)
T 1vp8_A 30 ETLRLAVERAKELGI-----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIV 102 (201)
T ss_dssp HHHHHHHHHHHHHTC-----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCC-----CEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEE
Confidence 345666778888775 345555 5699887766633 688999887 3 2457899999999999998
Q ss_pred EeCC
Q 023695 74 LTDP 77 (278)
Q Consensus 74 ~~~~ 77 (278)
...-
T Consensus 103 t~tH 106 (201)
T 1vp8_A 103 RQSH 106 (201)
T ss_dssp ECCC
T ss_pred EEec
Confidence 8764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.43 E-value=1.5 Score=38.76 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
.+++...+++|.+.+|.. +|.-|...+..|+.+|.+.++.+. .++.|++.++.+|+++
T Consensus 176 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~ 233 (398)
T 1kol_A 176 HGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEI 233 (398)
T ss_dssp HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEE
T ss_pred HHHHHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCCcE
Confidence 344556788887766654 799999999999999995444432 2468889999999984
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.42 E-value=0.82 Score=39.68 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=45.1
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
++.+...+++|.+.+|.. +|.-|.+.+..|+.+|. +++++ +.++.|++.++.+|++.++
T Consensus 157 ~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~---~~~~~~~~~~~~lGa~~vi 216 (352)
T 3fpc_A 157 HGAELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIFAV---GSRKHCCDIALEYGATDII 216 (352)
T ss_dssp HHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEEEE---CCCHHHHHHHHHHTCCEEE
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCceEE
Confidence 455677788987766664 69999999999999998 55554 3356788899999986544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.91 Score=39.77 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=44.7
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+++...+++|.+.+|.. +|..|.+++..|+.+|.+-++.+. .++.|++.++.+|++.+..
T Consensus 173 ~~l~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 173 HGVDLSGIKAGSTVAILG-GGVIGLLTVQLARLAGATTVILST--RQATKRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEEC
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEEC
Confidence 344566788887766654 599999999999999995444442 3467888889999976543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.75 Score=39.72 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+...+++|.+.+|...+|..|.+++..++.+|.+++++.... .+++.++.+|++.+.-
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~lga~~~~~ 195 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTEELLRLGAAYVID 195 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEEE
T ss_pred HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhCCCcEEEe
Confidence 3667788998777777778999999999999999877765443 4566677788875543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.67 Score=40.63 Aligned_cols=53 Identities=25% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
++|.+.+|...+|..|.+.+..|+.+|.+++++. ++.|++.++.+|++.++-.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~~ 215 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFDY 215 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEEC
Confidence 6776777777779999999999999999876654 3567888899999755443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=1.6 Score=38.10 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=43.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.+ ++.+++.++.+|++.+.
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~ 213 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPI 213 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEE
Confidence 4467888877667666899999999999999998666543 35778888889987544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=1.6 Score=37.75 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=44.4
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++++..+++|.+.+|+..+|.-|.+++..++.. |.+++++.. ++.+++.++.+|++.+.
T Consensus 161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~ 221 (347)
T 1jvb_A 161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYVI 221 (347)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEEe
Confidence 3445567888877788777779999999999998 998655533 35677777788876443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.31 E-value=2 Score=36.87 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=48.3
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.+.....+++|++.+|. .+|.-|...+..++.+|.+.++.+.. ++.|++.++.+||+.++...
T Consensus 151 ~~~~~~~~~~g~~VlV~-GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--SSEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCEEEEE-CCCCcchHHHHHHHHcCCcEEEEEec--hHHHHHHHHHcCCeEEEeCC
Confidence 34556677888665554 56889999999999999988776643 56889999999998776654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.19 E-value=1.3 Score=38.20 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 12 DAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 12 ~a~~~-g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.++.+ +.+++|.+.+|+..+|..|++++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 156 ~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~~ 215 (343)
T 2eih_A 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADET 215 (343)
T ss_dssp HHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEE
Confidence 34444 57888888788777799999999999999997666543 3567777777887543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=1.9 Score=37.36 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+.+++|.+.+|+..+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~ 212 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAGF 212 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4567888877777777899999999999999998666543 35677777888886543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=2.5 Score=36.10 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+.+.+++|.+.+|+..+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 194 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAA 194 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEE
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 5567888878788888899999999999999997666543 3566777777887543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.85 E-value=2.7 Score=36.17 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.++++..+++|.+.+|+..+|..|.+++..++..|.+++++.+. +.+++.++.+|++.+
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~~ 218 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEVF 218 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCEE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCceE
Confidence 44555567888888888888999999999999999977666543 244566777887543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.5 Score=40.36 Aligned_cols=59 Identities=19% Similarity=0.067 Sum_probs=45.8
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 11 ~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++++...+++|++.+|... |..|.+++..|+.+|.+++++. ++.|++.++.+|++.+.
T Consensus 132 ~~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~ 190 (315)
T 3goh_A 132 WQAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY 190 (315)
T ss_dssp HHHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred HHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence 34557788899977666666 9999999999999999776664 33567778889997665
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.84 E-value=2 Score=37.28 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=44.3
Q ss_pred HHHHc--CCCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 12 DAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 12 ~a~~~--g~l~~g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.++.+ ..+++|.+.+|... |..|..++..|+.+ |.+++++.+ ++.|++.++.+|++.++-
T Consensus 175 ~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~ 237 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADHVVD 237 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred HHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCEEEe
Confidence 44555 67888876666555 89999999999999 997555533 467888899999965543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.78 E-value=2.4 Score=36.71 Aligned_cols=59 Identities=29% Similarity=0.328 Sum_probs=44.9
Q ss_pred HHH-HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 12 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 12 ~a~-~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.++ +...+++|.+.+|+..+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 160 ~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~ 219 (351)
T 1yb5_A 160 RALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEV 219 (351)
T ss_dssp HHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEE
T ss_pred HHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCEE
Confidence 344 3577888888788777899999999999999998666543 3567777788887644
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.78 E-value=1.2 Score=38.71 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHc-CCCCCC-CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEE
Q 023695 12 DAEAK-GLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~-g~l~~g-~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~ 74 (278)
.++.+ +.+++| .+.+|...+|..|..++..|+.+|.+.+++...... ..+++.++.+|++.+.
T Consensus 156 ~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (364)
T 1gu7_A 156 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI 221 (364)
T ss_dssp HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred HHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence 34444 578888 776776667999999999999999988777754433 3345667889987544
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.72 E-value=2.3 Score=37.63 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=41.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+++|.+.+|.. +|..|.+.+..|+.+|..-++.+ +.++.|++.++.+|++.++-
T Consensus 209 ~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~ 264 (404)
T 3ip1_A 209 GGIRPGDNVVILG-GGPIGLAAVAILKHAGASKVILS--EPSEVRRNLAKELGADHVID 264 (404)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEEC
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEc
Confidence 4688887766654 59999999999999999433333 23568888999999876543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.94 Score=39.20 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=43.8
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++++..+++|.+.+|. .+|..|.+++..|+.+|.+++++... +.|++.++.+|++.+.
T Consensus 167 ~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVA-GFGGLGSMAVKYAVAMGAEVSVFARN---EHKKQDALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEE-SCSHHHHHHHHHHHHTTCEEEEECSS---STTHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHhcCCCeec
Confidence 34455578888776665 46999999999999999976665433 3567778889997666
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.45 E-value=1.6 Score=38.26 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=40.6
Q ss_pred CCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 21 PGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 21 ~g~~~vv~a-ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+|.+.+|.. .+|..|.+.+..|+.+|.+++++.. ++.|++.++.+|++.++..
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~~ 223 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR---KQEQADLLKAQGAVHVCNA 223 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES---SHHHHHHHHHTTCSCEEET
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHhCCCcEEEeC
Confidence 444666763 7899999999999999998776643 5688899999998755443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.36 E-value=2 Score=37.43 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+...+++|++.+|.. +|.-|.+++..|+.+|.+ ++++.+ ++.+++.++.+|++.+.-
T Consensus 184 ~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~vi~ 241 (371)
T 1f8f_A 184 NALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIIIAVDI---VESRLELAKQLGATHVIN 241 (371)
T ss_dssp TTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC---CHHHHHHHHHcCCCEEec
Confidence 567788887766665 699999999999999985 444422 467888888999865543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.34 E-value=2.8 Score=32.74 Aligned_cols=55 Identities=31% Similarity=0.470 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 72 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v 72 (278)
+.+.+++|.+.+|+..+|..|.+++..++..|.+++++.. ++.+.+.++.+|++.
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~ 86 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEY 86 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSE
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 3467788877677666899999999999999987666543 355666666666643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.24 E-value=2.6 Score=35.94 Aligned_cols=59 Identities=24% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 12 DAEA-KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 12 ~a~~-~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.++. .+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 130 ~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T 1qor_A 130 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQV 189 (327)
T ss_dssp HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 3443 567888877777777899999999999999987666543 3567777777777543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.17 E-value=2.5 Score=37.25 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+++...+++|++.+|.. +|.-|..++..|+.+|. +++++.+ ++.+++.++.+|++++
T Consensus 176 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~i 234 (398)
T 2dph_A 176 HGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIVGDQ---NPERLKLLSDAGFETI 234 (398)
T ss_dssp HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHTTTCEEE
T ss_pred HHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCcEE
Confidence 344567788987766655 69999999999999998 5555533 4678888999999743
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=90.08 E-value=1.3 Score=38.48 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=46.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~ 74 (278)
+.+.+++|++.+|...+|..|..+...|+.+|.+.++++.... ...+++.++.+|++.++
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence 4467889877677666799999999999999999887775543 34567888899997554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.00 E-value=1.3 Score=38.89 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=45.2
Q ss_pred HHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~-l~~g~~~vv~assGN~g~a~A~~a~~~G-~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++++.. +++|.+.+|.. +|..|.+++..|+.+| .+++++.+ ++.+++.++.+|++.++
T Consensus 185 ~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi 245 (380)
T 1vj0_A 185 HAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTL 245 (380)
T ss_dssp HHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEE
Confidence 3445566 78887767766 8999999999999999 57766654 45788888999986544
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.88 E-value=1.2 Score=40.09 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=72.6
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
...+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+..... ...
T Consensus 215 ~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~---~~~~~~~~~~lGa~~~i~~~~--------------~~~ 277 (447)
T 4a0s_A 215 GAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS---SAQKEAAVRALGCDLVINRAE--------------LGI 277 (447)
T ss_dssp TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCCEEEHHH--------------HTC
T ss_pred ccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEeccc--------------ccc
Confidence 367888877777767799999999999999998877763 578889999999976543210 000
Q ss_pred CCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEE
Q 023695 96 PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 161 (278)
Q Consensus 96 ~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV 161 (278)
. .+.. +++.........+..++.+..+..+|.+|-++|+. .+-..++...+.-+++-+
T Consensus 278 ~--~~~~--~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 278 T--DDIA--DDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV----TFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp C--TTGG--GCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHH----HHHHHHHHSCTTCEEEES
T ss_pred c--cccc--ccccccchhhhHHHHHHHHHhCCCceEEEECCCch----HHHHHHHHHhcCCEEEEE
Confidence 0 0000 00000011122334455555544689999998762 233444444455565554
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.82 E-value=2.6 Score=36.01 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=41.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+.+++|.+.+|+..+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~~ 194 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHHT 194 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 567888877777776799999999999999987666543 3566777777787643
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.80 E-value=1.3 Score=39.97 Aligned_cols=57 Identities=30% Similarity=0.313 Sum_probs=46.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 17 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 17 g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
..+++|.+.+|...+|..|.+.+..|+.+|.+++++.. ++.|++.++.+|++.+...
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence 56788877667666799999999999999998887763 5788999999999876544
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.74 E-value=2.4 Score=36.62 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=42.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+++...+++|++.+|.. +|.-|.+++..|+.+|.+++++ . .++.+++.++.+|++.+.
T Consensus 160 al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~-~--~~~~~~~~~~~lGa~~~~ 217 (352)
T 1e3j_A 160 ACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCT-A--RSPRRLEVAKNCGADVTL 217 (352)
T ss_dssp HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEE-E--SCHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEE-c--CCHHHHHHHHHhCCCEEE
Confidence 34455678887766665 5999999999999999984433 2 246788888999987443
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=89.66 E-value=1.5 Score=37.82 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=37.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
..||...+|.-|.+++..|+.+|.+++++.+. +.+++.++.+|++.+...
T Consensus 167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~---~~~~~~~~~~Ga~~~~~~ 216 (349)
T 3pi7_A 167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTVRR---DEQIALLKDIGAAHVLNE 216 (349)
T ss_dssp EEEESSTTSHHHHHHHHHHHHHTCEEEEEESC---GGGHHHHHHHTCSEEEET
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCCEEEEC
Confidence 45666688999999999999999987766543 356777788898765544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=89.52 E-value=2.8 Score=36.06 Aligned_cols=52 Identities=27% Similarity=0.243 Sum_probs=39.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+++|.+.+|... |..|.+++..++.+|.+++++.. ++.+++.++.+|++.+
T Consensus 161 ~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~ 212 (339)
T 1rjw_A 161 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI---GDEKLELAKELGADLV 212 (339)
T ss_dssp TCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHTTCSEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 5778877666665 67999999999999987665532 4677888888888643
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=2.9 Score=36.16 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=42.7
Q ss_pred HcCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 023695 15 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELV 73 (278)
Q Consensus 15 ~~g~l~~g--~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~-~Ga~v~ 73 (278)
+.+.+++| .+.+|+..+|.-|.+++..++..|. +++++.. ++.+++.++. +|++.+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~~~ 211 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFDAA 211 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCSEE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCceE
Confidence 56778888 8878877789999999999999998 7666543 3466777765 787543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=3 Score=35.92 Aligned_cols=57 Identities=35% Similarity=0.415 Sum_probs=42.9
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.++++..+ +|.+.+|... |.-|.+++..++.+|. +++++.+ ++.+++.++.+|++.+
T Consensus 159 ~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~~ 216 (348)
T 2d8a_A 159 DTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADYV 216 (348)
T ss_dssp HHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSEE
T ss_pred HHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEE
Confidence 44556677 8877666666 9999999999999998 6666543 3677888888888644
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=2.4 Score=36.40 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+++...++||++.+|. .+|.-|...+..+++ .|.+++++-+ ++.|++..+.+|++.++-..
T Consensus 155 ~l~~~~~~~g~~VlV~-GaG~~g~~a~~~a~~~~g~~Vi~~~~---~~~r~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 155 AIKVSGVKPGDWQVIF-GAGGLGNLAIQYAKNVFGAKVIAVDI---NQDKLNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTSCCEEEEEES---CHHHHHHHHHTTCSEEEEC-
T ss_pred eecccCCCCCCEEEEE-cCCCccHHHHHHHHHhCCCEEEEEEC---cHHHhhhhhhcCCeEEEeCC
Confidence 4455567888765555 556666555556655 5777666533 46788899999998766543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.17 E-value=2.1 Score=37.01 Aligned_cols=57 Identities=28% Similarity=0.275 Sum_probs=43.7
Q ss_pred HcCCCC------CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLIT------PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~------~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...++ +|.+.+|...+|.-|.+++..|+.+|.+++++.+ ++.+++.++.+|++.+.
T Consensus 138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi 200 (346)
T 3fbg_A 138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTAS---RNETIEWTKKMGADIVL 200 (346)
T ss_dssp TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC---SHHHHHHHHHHTCSEEE
T ss_pred HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 455666 7777777768899999999999999997666532 46788888888886544
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=3 Score=35.81 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=42.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~~Ga~v~ 73 (278)
+...+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++ .+|++.+
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~~ 205 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDDA 205 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSEE
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCceE
Confidence 4567888877777777799999999999999987665533 456777776 6887543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.39 E-value=2.9 Score=36.50 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=41.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 19 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 19 l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+++|++.+|...+|.-|.+++..|+.+|.+++++. . +.+++.++.+|++.+.-.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~---~~~~~~~~~lGa~~v~~~ 234 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-S---QDASELVRKLGADDVIDY 234 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-C---GGGHHHHHHTTCSEEEET
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-C---hHHHHHHHHcCCCEEEEC
Confidence 78887777776689999999999999998766554 2 356777889999765543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.18 E-value=1.1 Score=38.40 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=42.9
Q ss_pred HHcCCCCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~-~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++..+++|. +.+|...+|..|.+++..|+.+|.+++++.... .+++.++.+|++.+.
T Consensus 141 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~---~~~~~~~~lGa~~~i 199 (328)
T 1xa0_A 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVL 199 (328)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEE
T ss_pred HhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCcEEE
Confidence 3445678874 666766679999999999999999876665543 456677889987544
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.08 E-value=1.6 Score=38.02 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++.+..+++|.+.+|... |.-|..++..|+.+|.+++++.+.. .+++.++.+|++.+.
T Consensus 170 ~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~---~~~~~~~~lGa~~v~ 228 (360)
T 1piw_A 170 SPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSS---RKREDAMKMGADHYI 228 (360)
T ss_dssp HHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH---HHHHHHHHcCCCEEE
Confidence 3444467888877666655 9999999999999999865554433 456667778886543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.93 E-value=6.4 Score=32.54 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=45.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..|||.+++--|+++|..-.+.|.+++++-... .-....+.++..|.+++.+..+ .+.++..+...+..+++
T Consensus 9 valVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 9 VVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 679999889999999998888998876653321 1123345667778777655421 23444555555555554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=87.78 E-value=2.1 Score=37.15 Aligned_cols=58 Identities=31% Similarity=0.373 Sum_probs=42.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+++...+++|.+.+|.. +|..|.+++..|+.+|. +++++.+ ++.|++.++.+|++.+.
T Consensus 163 al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~vi 221 (356)
T 1pl8_A 163 ACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVVVTDL---SATRLSKAKEIGADLVL 221 (356)
T ss_dssp HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEE
Confidence 34555678887766655 69999999999999999 5555433 46788888999996443
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=2 Score=37.20 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=40.5
Q ss_pred CCCCCC------CeEEEEeCCChHHHHH-HHHH-HHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 17 GLITPG------ESVLIEPTSGNTGIGL-AFMA-AAKQYR-LIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 17 g~l~~g------~~~vv~assGN~g~a~-A~~a-~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
..+++| .+.+|... |.-|..+ +..| +.+|.+ ++++.+......|++.++.+|++.+
T Consensus 162 ~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v 226 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV 226 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred cCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence 345666 67666665 9999999 9999 999997 6666554422237778889999766
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=87.49 E-value=1.6 Score=36.85 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=41.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 16 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 16 ~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+ +++|.+.+|...+|..|.+++..++.+|.+++++.+. +.+++.++.+|++.+
T Consensus 121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~~ 174 (302)
T 1iz0_A 121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEA 174 (302)
T ss_dssp TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEE
T ss_pred hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhcCCCEE
Confidence 56 8888777777777999999999999999976666543 345666677887644
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=2.6 Score=36.65 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=42.4
Q ss_pred cCCCC--C-------CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 16 KGLIT--P-------GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 16 ~g~l~--~-------g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
...++ + |.+.+|... |.-|.+++..++.+|.+++++.+......+++.++.+|++.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v 231 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY 231 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred ccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence 55677 7 777667666 999999999999999977766543323366777888898765
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=1.3 Score=37.87 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=42.8
Q ss_pred HHcCCCCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~-~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++..+++|. +.+|...+|..|.+++..|+.+|.+++++.+.. .+++.++.+|++.+.
T Consensus 142 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~---~~~~~~~~lGa~~v~ 200 (330)
T 1tt7_A 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVI 200 (330)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEE
T ss_pred HHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHcCCcEEE
Confidence 3445678874 667777779999999999999999876665543 456667788986543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=87.10 E-value=3.5 Score=35.99 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=42.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+...+++|.+.+|.. +|..|.+.+..|+.+|. +++++-+ ++.|++.++.+|++.+.
T Consensus 186 ~~~~~~~~g~~VlV~G-aG~vG~~a~q~a~~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~vi 243 (378)
T 3uko_A 186 WNTAKVEPGSNVAIFG-LGTVGLAVAEGAKTAGASRIIGIDI---DSKKYETAKKFGVNEFV 243 (378)
T ss_dssp HTTTCCCTTCCEEEEC-CSHHHHHHHHHHHHHTCSCEEEECS---CTTHHHHHHTTTCCEEE
T ss_pred HhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCcEEE
Confidence 3567788887766654 59999999999999999 4555422 34677888899996543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.99 E-value=9 Score=31.64 Aligned_cols=73 Identities=15% Similarity=0.029 Sum_probs=44.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
+..|||..++--|+++|..-...|.++++.-... ......+.++..|.+++.+..+ .+.++..+...+..++.
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 3678888889999999999888888766542211 1122345566677777665532 12334444445554544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=5.4 Score=34.23 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=40.5
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+++|.+.+|. .+|..|.+.+..|+.+ |.+++++. .++.|++.++.+|++.+..
T Consensus 168 ~~~~g~~vlv~-GaG~vG~~a~qla~~~g~~~Vi~~~---~~~~~~~~~~~lGa~~~i~ 222 (345)
T 3jv7_A 168 LLGPGSTAVVI-GVGGLGHVGIQILRAVSAARVIAVD---LDDDRLALAREVGADAAVK 222 (345)
T ss_dssp GCCTTCEEEEE-CCSHHHHHHHHHHHHHCCCEEEEEE---SCHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHcCCCEEEc
Confidence 57888665555 4599999999999998 66666553 3568889999999876543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=3.6 Score=35.85 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+++|++.+|.. +|.-|..++..|+.+|. +++++.+ ++.|++.++.+|++.+
T Consensus 185 ~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~v 240 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGT---HKDKFPKAIELGATEC 240 (373)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC---CHHHHHHHHHcCCcEE
Confidence 556788887766654 69999999999999998 4444432 3467778888998644
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=85.73 E-value=1.8 Score=36.91 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=42.3
Q ss_pred HcCCCCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~-~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
++..++|+. +.+|...+|..|.+++..|+.+|.+++++.+. +.|++.++.+|++.+.
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~vi 196 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGR---ESTHGYLKSLGANRIL 196 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTCSEEE
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCCEEE
Confidence 444456632 46666667999999999999999987777654 4677888889987654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.67 E-value=2.8 Score=36.56 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++++..+++|.+.+|.. +|..|.+++..|+.+|.+++++.+ ++.+++.++.+|++.+.
T Consensus 185 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~Vi~~~~---~~~~~~~a~~lGa~~vi 243 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVV 243 (369)
T ss_dssp HHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEe
Confidence 334444678887766654 588999999999999998555543 34567777788986544
|
| >1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=85.56 E-value=3.3 Score=32.83 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEe-------C--CCCCHHHHHHHHHcCCEEE
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITM-------P--ASMSLERRIILRAFGAELV 73 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~a-ssGN~g~a~A~~a~~~G~~~~vv~-------p--~~~~~~~~~~~~~~Ga~v~ 73 (278)
..+...+.+|.+.|. +.||.+ |+|.++..++-.. -| +.++|. | ...+++.++.++..|..|+
T Consensus 38 ~tl~la~era~e~~I-----k~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~ 109 (206)
T 1t57_A 38 RVLELVGERADQLGI-----RNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVY 109 (206)
T ss_dssp HHHHHHHHHHHHHTC-----CEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCC-----CEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEE
Confidence 345666778888775 445555 5588887665532 35 777775 3 2457899999999999998
Q ss_pred EeCC
Q 023695 74 LTDP 77 (278)
Q Consensus 74 ~~~~ 77 (278)
...-
T Consensus 110 t~tH 113 (206)
T 1t57_A 110 AGSH 113 (206)
T ss_dssp CCSC
T ss_pred Eeec
Confidence 7764
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=84.82 E-value=6.9 Score=34.15 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHc-CC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 023695 4 KIGYSMISDAEAK-GL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 51 (278)
Q Consensus 4 R~a~~~l~~a~~~-g~-l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~v 51 (278)
|+..+.+..+.+. |. --+| ++++....||-|..+|..++.+|.++++
T Consensus 155 ~Gv~~~~~~~~~~~G~~~L~G-ktV~I~G~GnVG~~~A~~l~~~GakVvv 203 (355)
T 1c1d_A 155 VGVFEAMKATVAHRGLGSLDG-LTVLVQGLGAVGGSLASLAAEAGAQLLV 203 (355)
T ss_dssp HHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCC-CEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence 5667777776654 43 1234 5688889999999999999999988773
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=84.57 E-value=6.1 Score=33.73 Aligned_cols=63 Identities=21% Similarity=0.093 Sum_probs=44.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHH----HcCCEEEEeCC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILR----AFGAELVLTDP 77 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~----~~Ga~v~~~~~ 77 (278)
..|.+++|-+..++.=.+|.++|++.+++++|++++++-|+.- ++.-++.++ ..|+.+..+..
T Consensus 139 ~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d 207 (307)
T 3tpf_A 139 WNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYD 207 (307)
T ss_dssp TTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESC
T ss_pred HhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 4466654544444444579999999999999999999999864 333333333 67999887763
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=3.8 Score=35.74 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+++|++.+|.. +|.-|.+++..|+.+|. +++++.+ ++.|++.++.+|++.+
T Consensus 189 ~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~v 244 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDI---NGEKFPKAKALGATDC 244 (376)
T ss_dssp TTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCcEE
Confidence 557788887766655 69999999999999998 4555432 3466777888998644
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.42 E-value=4.1 Score=35.44 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+++|++.+|.. +|.-|.+++..|+.+|. +++++.. ++.+++.++.+|++.+
T Consensus 186 ~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~v 241 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDL---NPDKFEKAKVFGATDF 241 (374)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCCEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhCCceE
Confidence 556788887766665 69999999999999998 4544422 3466777888998644
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=84.31 E-value=3.9 Score=35.62 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+++|++.+|.. +|.-|..++..|+.+|. +++++.. ++.+++.++.+|++.+
T Consensus 185 ~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~v 240 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDI---NKDKFAKAKEVGATEC 240 (374)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCceE
Confidence 556788887766665 69999999999999998 4444422 3466777788898543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=83.99 E-value=14 Score=30.38 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=23.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIIT 52 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv 52 (278)
..|||..+|--|.++|..-...|.+++++
T Consensus 28 ~~lVTGas~gIG~aia~~la~~G~~V~~~ 56 (271)
T 4ibo_A 28 TALVTGSSRGLGRAMAEGLAVAGARILIN 56 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 67888888889999998887888775554
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=82.71 E-value=4.5 Score=34.76 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~--G~~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
.+ +|++.+|... |.-|..++..|+.+ |.+++++. .++.+++.++.+|++.+
T Consensus 168 ~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~v 220 (344)
T 2h6e_A 168 KF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGIS---RSKKHRDFALELGADYV 220 (344)
T ss_dssp TC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEEC---SCHHHHHHHHHHTCSEE
T ss_pred CC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEe---CCHHHHHHHHHhCCCEE
Confidence 56 7766666555 99999999999999 98754443 24678888888998644
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=82.51 E-value=10 Score=30.98 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=22.4
Q ss_pred eEEEEeCCCh--HHHHHHHHHHHcCCeEEEEeCC
Q 023695 24 SVLIEPTSGN--TGIGLAFMAAAKQYRLIITMPA 55 (278)
Q Consensus 24 ~~vv~assGN--~g~a~A~~a~~~G~~~~vv~p~ 55 (278)
..|||..+|+ -|+++|..-.+.|.++++.-..
T Consensus 8 ~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~ 41 (256)
T 4fs3_A 8 TYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRK 41 (256)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 6677775553 6777777777888887766543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=82.09 E-value=4.3 Score=35.30 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 73 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~-~~~vv~p~~~~~~~~~~~~~~Ga~v~ 73 (278)
+...+++|.+.+|.. +|.-|..++..|+.+|. +++++.+ ++.|++.++.+|++.+
T Consensus 184 ~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~v 239 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDI---NKDKFARAKEFGATEC 239 (373)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECS---CGGGHHHHHHHTCSEE
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCceE
Confidence 556788887766665 69999999999999998 4544432 3456777788888543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.02 E-value=5.6 Score=34.50 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=42.1
Q ss_pred HcCCCC-----CCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLIT-----PGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~-----~g~~~vv~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+...++ +|.+.+|...+|..|.+++..|+. .|.+++++.+ ++.|++.++.+|++.++
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~---~~~~~~~~~~lGad~vi 222 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS---RPETQEWVKSLGAHHVI 222 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS---SHHHHHHHHHTTCSEEE
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 455666 676666666689999999999997 5887666643 45788888889987554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=81.73 E-value=6.3 Score=28.75 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=36.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
.++....|..|.++|..-...|.+++++-. .+.+.+.++..|.+++..+
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~---~~~~~~~~~~~~~~~~~gd 56 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDK---SKEKIELLEDEGFDAVIAD 56 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEC---CHHHHHHHHHCCCcEEECC
Confidence 355567799999999999999999888743 4566666666777665554
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=81.32 E-value=4.8 Score=34.80 Aligned_cols=58 Identities=17% Similarity=0.045 Sum_probs=40.1
Q ss_pred HHHcCCCC-CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 023695 13 AEAKGLIT-PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 74 (278)
Q Consensus 13 a~~~g~l~-~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~-~~Ga~v~~ 74 (278)
++++..++ +|.+.+|.. +|.-|..++..|+.+|.+++++.+. +.+++.++ .+|++.+.
T Consensus 171 ~l~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~Vi~~~~~---~~~~~~~~~~lGa~~vi 230 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILG-LGGVGHMGVKIAKAMGHHVTVISSS---NKKREEALQDLGADDYV 230 (357)
T ss_dssp HHHHTSTTSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEESS---TTHHHHHHTTSCCSCEE
T ss_pred HHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeCC---hHHHHHHHHHcCCceee
Confidence 34444566 887766665 6899999999999999976665543 24566665 78886443
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=80.54 E-value=14 Score=29.95 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=39.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
..|||..+|.-|.++|..-...|.+++++.... .......++..|.++..+..
T Consensus 6 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~ 58 (255)
T 2q2v_A 6 TALVTGSTSGIGLGIAQVLARAGANIVLNGFGD-PAPALAEIARHGVKAVHHPA 58 (255)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHTTSCCEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHhcCCceEEEeC
Confidence 678988999999999999999999877765443 24455666666777766543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.46 E-value=17 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=25.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 54 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p 54 (278)
..|||..+|.-|+++|..-...|.+++++..
T Consensus 15 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r 45 (267)
T 1iy8_A 15 VVLITGGGSGLGRATAVRLAAEGAKLSLVDV 45 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6788889999999999988888888776643
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=80.21 E-value=12 Score=33.47 Aligned_cols=88 Identities=16% Similarity=0.024 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCC-CCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCC-H------------HHHHHHHHcCCEE
Q 023695 8 SMISDAEAKGLIT-PGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMS-L------------ERRIILRAFGAEL 72 (278)
Q Consensus 8 ~~l~~a~~~g~l~-~g~~~vv~assGN~g~a~A~~a~~-~G~~~~vv~p~~~~-~------------~~~~~~~~~Ga~v 72 (278)
..+.+-.++++++ .+...|||..|+--|+|+|..-+. .|.+++++-.+... . ...+.++..|.++
T Consensus 46 ~qi~y~~~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a 125 (422)
T 3s8m_A 46 EQIAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYS 125 (422)
T ss_dssp HHHHHHHHTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHhhccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcE
Confidence 4455566777774 344568888888899999999888 99998876533211 1 1235667788777
Q ss_pred EEeCCC-CChHHHHHHHHHHHHhC
Q 023695 73 VLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 73 ~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..+..+ .+.+...+...+..++.
T Consensus 126 ~~i~~Dvtd~~~v~~~v~~i~~~~ 149 (422)
T 3s8m_A 126 KSINGDAFSDAARAQVIELIKTEM 149 (422)
T ss_dssp EEEESCTTSHHHHHHHHHHHHHHS
T ss_pred EEEEecCCCHHHHHHHHHHHHHHc
Confidence 655432 23344444555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 278 | ||||
| d1z7wa1 | 320 | c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C | 1e-87 | |
| d1o58a_ | 293 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 2e-73 | |
| d1y7la1 | 310 | c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C | 3e-65 | |
| d1ve1a1 | 302 | c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C | 2e-61 | |
| d1fcja_ | 302 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 5e-60 | |
| d1jbqa_ | 355 | c.79.1.1 (A:) Cystathionine beta-synthase {Human ( | 5e-60 | |
| d1wkva1 | 382 | c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C | 2e-52 | |
| d2bhsa1 | 292 | c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C | 3e-51 | |
| d1tdja1 | 331 | c.79.1.1 (A:5-335) Threonine deaminase {Escherichi | 2e-32 | |
| d1tyza_ | 338 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 2e-26 | |
| d1v71a1 | 318 | c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S | 4e-26 | |
| d1v8za1 | 386 | c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun | 3e-25 | |
| d1j0aa_ | 325 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 4e-22 | |
| d1f2da_ | 341 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-21 | |
| d1ve5a1 | 310 | c.79.1.1 (A:2-311) Threonine deaminase {Thermus th | 1e-20 | |
| d1qopb_ | 390 | c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S | 1e-17 | |
| d1e5xa_ | 477 | c.79.1.1 (A:) Threonine synthase {Mouse-ear cress | 8e-15 | |
| d1v7ca_ | 351 | c.79.1.1 (A:) Threonine synthase {Thermus thermoph | 2e-14 | |
| d1p5ja_ | 319 | c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa | 2e-12 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 262 bits (669), Expect = 1e-87
Identities = 226/274 (82%), Positives = 251/274 (91%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRII
Sbjct: 47 IGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRII 106
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG
Sbjct: 107 LLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKG 166
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIGA
Sbjct: 167 TGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGA 226
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
GF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENAG
Sbjct: 227 GFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAG 286
Query: 245 KLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278
KL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 287 KLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 320
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Score = 224 bits (572), Expect = 2e-73
Identities = 133/259 (51%), Positives = 178/259 (68%), Gaps = 6/259 (2%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +
Sbjct: 40 PALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKV 96
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K
Sbjct: 97 LKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQ 155
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYGIEPTESPVLSGGKPGPHKIQGIG 183
+IDA V+G+GTGGTI+G G+ LK N +K+ +EP +SPVLSGG+PG H IQGIG
Sbjct: 156 MDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIG 215
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
AGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 216 AGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG-P 274
Query: 244 GKLIVVIFPSFGERYLSSV 262
+V + P ERYLS +
Sbjct: 275 DARVVTVAPDHAERYLSIL 293
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 204 bits (519), Expect = 3e-65
Identities = 145/268 (54%), Positives = 188/268 (70%), Gaps = 9/268 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +
Sbjct: 44 IGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRL 102
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWK 123
L G LVLT+ AKGMKGA+ KAEEI+A P+ ML+QFENPANP+IH ETTGPE+WK
Sbjct: 103 LCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWK 162
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPVLSGGKPG------P 176
+ G++D +V+G+GTGG+ITG + +K I +EP ESPV+S G P
Sbjct: 163 DTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGP 222
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
HKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA +
Sbjct: 223 HKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL 282
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLF 264
AK PE A KLIVVI PS ERYLS+ LF
Sbjct: 283 AKLPEFADKLIVVILPSASERYLSTALF 310
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Score = 194 bits (493), Expect = 2e-61
Identities = 135/261 (51%), Positives = 187/261 (71%), Gaps = 3/261 (1%)
Query: 5 IGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 63
+ MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+
Sbjct: 43 PAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKR 102
Query: 64 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 123
+L+AFGAELVLTDP + M A ++A + + A+M QF+NPAN + HYETTGPEL++
Sbjct: 103 VLKAFGAELVLTDPERRMLAAREEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELYE 161
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 183
GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG+G
Sbjct: 162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMG 221
Query: 184 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 243
GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A+
Sbjct: 222 PGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LGP 280
Query: 244 GKLIVVIFPSFGERYLSSVLF 264
GK + I P G +YLS+ L+
Sbjct: 281 GKRVACISPDGGWKYLSTPLY 301
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Score = 190 bits (484), Expect = 5e-60
Identities = 138/260 (53%), Positives = 190/260 (73%), Gaps = 10/260 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
IG +MI DAE +G++ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR +
Sbjct: 44 IGANMIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKL 102
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWK 123
L+A GA LVLT+ AKGMKGA+QKAEEI+A P +LQQF NPANP+IH +TTGPE+W+
Sbjct: 103 LKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWE 162
Query: 124 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY--GIEPTESPVLSGGK------PG 175
+ G++D +SG+GTGGT+TG +++K L +EPT+SPV++ PG
Sbjct: 163 DTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPG 222
Query: 176 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 235
PHKIQGIGAGF+PG L++ +ID+VV ++++EAI TA+ L +EG+ GISSG A AAA++
Sbjct: 223 PHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALK 282
Query: 236 IAKRPENAGKLIVVIFPSFG 255
+ + K IVVI PS G
Sbjct: 283 LQEDESFTNKNIVVILPSSG 302
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 192 bits (488), Expect = 5e-60
Identities = 102/274 (37%), Positives = 155/274 (56%), Gaps = 10/274 (3%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
I MI DAE G + P +IEPTSGNTGIGLA AA + YR II MP MS E+ +
Sbjct: 80 ISLRMIEDAERDGTLKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV 138
Query: 65 LRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 121
LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E+
Sbjct: 139 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI 198
Query: 122 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK-----PGP 176
+ G++D LV+ +GTGGTITG + LKEK P ++ G++P S + +
Sbjct: 199 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT 258
Query: 177 HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 236
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 259 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA 318
Query: 237 AKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 270
A+ + G+ VVI P Y++ L + +
Sbjct: 319 AQELQ-EGQRCVVILPDSVRNYMTKFLSDRWMLQ 351
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 173 bits (439), Expect = 2e-52
Identities = 59/261 (22%), Positives = 116/261 (44%), Gaps = 15/261 (5%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+IS + + G S++ + TS N G+ L+ +A YR + +P + +++
Sbjct: 129 PAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLL 185
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK- 123
R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 186 PRLLGAQVIVDPEAPSTVHLLPRVMKD-SKNEGFVHVNQFYNDANFEAHMRGTAREIFVQ 244
Query: 124 --GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 181
G + + +GT G ++ A +L+ +P+I+ ++P + + G + +
Sbjct: 245 SRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLW 304
Query: 182 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 241
I ++I + +V+ +EA+E +A +GL +G S G A A + A +
Sbjct: 305 INM--------LDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGD 356
Query: 242 NAGKLIVVIFPSFGERYLSSV 262
VV+ P G +YLS V
Sbjct: 357 LEPGDYVVVVPDTGFKYLSLV 377
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Score = 167 bits (424), Expect = 3e-51
Identities = 110/260 (42%), Positives = 162/260 (62%), Gaps = 11/260 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
SMI +AE +G I PG+ + IE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 43 AALSMIVEAEKRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 101
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+RA+GAEL+L +GM+GA + +A +L QF NP NP HY TTGPE+W+
Sbjct: 102 MRAYGAELILVTKEQGMEGA-RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQ 160
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA 184
+GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 161 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------- 213
Query: 185 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 244
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +AK N
Sbjct: 214 EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANPD 271
Query: 245 KLIVVIFPSFGERYLSSVLF 264
++V I G+RYLS+ +F
Sbjct: 272 AVVVAIICDRGDRYLSTGVF 291
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 2e-32
Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 26/273 (9%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
Y+M++ + +I ++GN G+AF +A + +I MP + + +
Sbjct: 61 GAYAMMAGLTEEQ----KAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA 116
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+R FG E++L A L++ + F++P I + T
Sbjct: 117 VRGFGGEVLLHGANFDEAKAKA---IELSQQQGFTWVPPFDHP--MVIAGQGTLALELLQ 171
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ---- 180
+D + +G GG G +K+ P IK+ +E +S L H +
Sbjct: 172 QDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRV 231
Query: 181 -----GIGAGFVPGV---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232
G+ + L +D+++ V SD K L S A A
Sbjct: 232 GLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAG 291
Query: 233 AIEIAKRPENAGKLIVVIFP-----SFGERYLS 260
+ G+ + I G RY+S
Sbjct: 292 MKKYIALHNIRGERLAHILSGANVNFHGLRYVS 324
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Score = 103 bits (256), Expect = 2e-26
Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 27/270 (10%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+I +A A+G T V I N +A +AA + ++ ++ +
Sbjct: 54 KLEYLIPEALAQGCDTL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVY 110
Query: 65 LRAFGAEL----------VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHY 114
R ++ V G + + + A E + +P
Sbjct: 111 DRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGL 170
Query: 115 ETTGPELW-----KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 169
G G + D +V TG T G ++ G++ + P
Sbjct: 171 GFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQ 230
Query: 170 SGGKPGPHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 222
+ + Q + VL+ + ++ +E +L A EG+
Sbjct: 231 TREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLT 290
Query: 223 G-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 250
+ G + IE+ + E G ++
Sbjct: 291 DPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 102 bits (254), Expect = 4e-26
Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+ +S ++ ++ +SGN +A A I MP +
Sbjct: 55 GALNALSQLNEA----QRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAA 110
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
+ +G ++++ D K + + K +++ ++ +++P + T EL++
Sbjct: 111 TKGYGGQVIMYDRYKDDREKMAKE---ISEREGLTIIPPYDHP-HVLAGQGTAAKELFE- 165
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS------------GG 172
G +DAL +G GG ++G+ + PN ++YG+EP
Sbjct: 166 EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTP 225
Query: 173 KPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232
K Q G + +D+++ VS +E I+ K A + + V + + AA
Sbjct: 226 KTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAA 285
Query: 233 AIEIAKRPENAGKLIVVI 250
A + ++ + K I +I
Sbjct: 286 ARAMKEKLK--NKRIGII 301
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (251), Expect = 3e-25
Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 45/283 (15%)
Query: 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDP-AKG 80
++ E +G G+ A A ++ I M A ++ GA ++ + ++
Sbjct: 101 LIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160
Query: 81 MKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDA 131
+K A+ +A T ++ P + G E + G++
Sbjct: 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPD 220
Query: 132 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG--------GKPGP------- 176
++ GG+ + + +KL G+E + SG G+ G
Sbjct: 221 VIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSY 280
Query: 177 ----------------HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 220
+ G G L+ E V V+ +EA++ L+ EG+
Sbjct: 281 FLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGI 340
Query: 221 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVL 263
+ S A A A+++AK + ++I+V G++ L VL
Sbjct: 341 IPALESAHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 91.7 bits (226), Expect = 4e-22
Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 12/254 (4%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++ DA +KG + + N A I+ + L+ +
Sbjct: 57 KLEYLLGDALSKGADVV---ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYL 113
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEIL----AKTPNAYMLQQFENPANPKIHYETTGPE 120
L AK ++ AEEI + Y++ + Y E
Sbjct: 114 LDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGE 173
Query: 121 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 180
+ S + D++V G+GGT+ G L N +I+ GI + K +
Sbjct: 174 IATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKE 233
Query: 181 GI---GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEI 236
G + + E + + + +EG+ + + +G A +++
Sbjct: 234 AAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDL 293
Query: 237 AKRPENAGKLIVVI 250
A++ E G+ I+ I
Sbjct: 294 ARKGE-LGEKILFI 306
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Score = 90.5 bits (223), Expect = 1e-21
Identities = 33/271 (12%), Positives = 71/271 (26%), Gaps = 28/271 (10%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++ D V I N +A +AA + ++ + +
Sbjct: 54 KLEYIVPDIVEGDYTHL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEK 110
Query: 65 LRAFGAELVLTDPAKG-------------MKGAVQKAEEILAKTPNAYMLQQFENPANPK 111
+ G M+ + A + L + +
Sbjct: 111 DVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKY 170
Query: 112 IH-----YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 166
+ G + D +V TG T G + + + I+ + +
Sbjct: 171 GGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFT 230
Query: 167 -----PVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 221
K+ G+ F L+ V ++ IE + A +EG+
Sbjct: 231 SEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVL 290
Query: 222 VG-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 250
+ G + I + K G ++ +
Sbjct: 291 TDPVYEGKSMQGLIALIKEDYFKPGANVLYV 321
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Score = 87.4 bits (215), Expect = 1e-20
Identities = 46/263 (17%), Positives = 92/263 (34%), Gaps = 32/263 (12%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
S E L+ +SGN G+A+ A + ++ MP S ++
Sbjct: 53 GALSKALALE-------NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKAC 105
Query: 65 LRAFGAEL--VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 122
RA+GAE+ + A EE ++ F++P L
Sbjct: 106 ARAYGAEVVDRGVTAKNREEVARALQEE-----TGYALIHPFDDPLVIAGQGTAGLELLA 160
Query: 123 --KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP------------- 167
G A+++ +G GG + G +K +P + G+EP +
Sbjct: 161 QAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILR 220
Query: 168 VLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227
+ + + ++ + G + +D ++ VS + +E +LL + V +
Sbjct: 221 LEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGA 280
Query: 228 GAAAAAIEIAKRPENAGKLIVVI 250
AA +E R + + ++
Sbjct: 281 LPLAAVLEHGARL---PQTLALL 300
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 79.9 bits (196), Expect = 1e-17
Identities = 48/269 (17%), Positives = 84/269 (31%), Gaps = 44/269 (16%)
Query: 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGM 81
+ E +G G+ A +A + I M A +R GAE++ + +
Sbjct: 106 IAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATL 165
Query: 82 KGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDAL 132
K A +A + + P + G E GR+
Sbjct: 166 KDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDA 225
Query: 133 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG--------GKPG--------- 175
V GG+ + ++ L G+EP + +G G+ G
Sbjct: 226 VIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPM 285
Query: 176 --------------PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 221
+ G L + V ++ DEA+E K L EG+
Sbjct: 286 MQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGII 345
Query: 222 VGISSGGAAAAAIEIAKRPENAGKLIVVI 250
+ S A A A+++ + +L+VV
Sbjct: 346 PALESSHALAHALKMMREQPEKEQLLVVN 374
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 71.6 bits (174), Expect = 8e-15
Identities = 37/300 (12%), Positives = 82/300 (27%), Gaps = 32/300 (10%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
++S + + ++G+T L+ A+ I+ +PA+ +
Sbjct: 157 GMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQL 215
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
++ + G ++ EI L N + L +
Sbjct: 216 VQPIANGAFVLSIDTDFDGCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQF 273
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEKN--------PNIKLYGIEPTESPVLSG----- 171
D ++ G G I K K P + L
Sbjct: 274 DWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWK 333
Query: 172 ---GKPGPHKIQGIGAGFVPGVLE-----VNIIDEVVQVSSDEAIETAKLLALKEGLFVG 223
P ++ + + +V+ +++E + A A G+F+
Sbjct: 334 DFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFIC 393
Query: 224 ISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAESMT 275
+G A A ++ + VV+ F Y S+ + + + +
Sbjct: 394 PHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPV 453
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Score = 70.5 bits (171), Expect = 2e-14
Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 24/273 (8%)
Query: 5 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64
+S A G ++GNT A AA I+ +PA ++
Sbjct: 64 GMTLAVSKAVEGGAQAV-----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVA 118
Query: 65 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 124
++ + + + +T E+
Sbjct: 119 QSLVHGARIVQVEGNFDDALRLTQKLT----EAFPVALVNSVNPHRLEGQKTLAFEVVDE 174
Query: 125 SGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKLYGIEPTESPVLSGGKPGPHK 178
G +G G IT K ++ G + + L G+P
Sbjct: 175 LGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERP 234
Query: 179 --------IQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 230
I + + + V+ +E + + LA +EG+F +S A
Sbjct: 235 ETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAM 294
Query: 231 AAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 262
A ++ + +V+ G + ++
Sbjct: 295 AGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 2e-12
Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 26/264 (9%)
Query: 6 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 65
+G + ++GN G+ A+ A I +P + L
Sbjct: 42 IGHFCKRWAKQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERL 96
Query: 66 RAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 125
+ GA + + A+ + P + F++P + H
Sbjct: 97 KNEGATCKVVGELLDEAF--ELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLW 154
Query: 126 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI------------EPTESPVLSGGK 173
+S G G + ++ + + + L
Sbjct: 155 EKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKIT 214
Query: 174 PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 233
+ G L +S EA+ + E + V + G A AA
Sbjct: 215 SVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAV 274
Query: 234 I-------EIAKRPENAGKLIVVI 250
++ +VVI
Sbjct: 275 YSHVIQKLQLEGNLRTPLPSLVVI 298
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 278 | |||
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve1a1 | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1p5ja_ | 319 | L-serine dehydratase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 100.0 | |
| d1ve5a1 | 310 | Threonine deaminase {Thermus thermophilus [TaxId: | 100.0 | |
| d1v7ca_ | 351 | Threonine synthase {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1j0aa_ | 325 | 1-aminocyclopropane-1-carboxylate deaminase {Archa | 100.0 | |
| d1tyza_ | 338 | 1-aminocyclopropane-1-carboxylate deaminase {Pseud | 100.0 | |
| d1f2da_ | 341 | 1-aminocyclopropane-1-carboxylate deaminase {Yeast | 99.98 | |
| d1vb3a1 | 428 | Threonine synthase {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 99.33 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.46 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.46 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.36 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.27 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.19 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.94 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.88 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.86 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.73 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.67 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.51 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.36 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.35 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.22 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.05 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.7 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.68 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.61 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.61 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.06 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.76 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 93.51 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.7 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.32 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.04 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.83 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.75 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.69 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.59 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.53 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 90.53 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 89.8 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 89.45 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 88.9 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 88.83 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.75 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 86.58 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 86.28 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.13 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 85.75 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.57 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 85.55 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.28 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 85.16 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.92 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 84.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.43 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 84.31 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 83.83 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 83.37 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.36 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 83.35 | |
| d1t57a_ | 186 | Hypothetical protein MTH1675 {Methanobacterium the | 83.16 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 83.08 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.75 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.7e-61 Score=423.17 Aligned_cols=278 Identities=81% Similarity=1.258 Sum_probs=257.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+|+++|.++++...+|++||||||.|+|++|+.+|++|++|||+++++.|+++++.|||+|+.++...+
T Consensus 43 fKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~ 122 (320)
T d1z7wa1 43 VKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122 (320)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeecccc
Confidence 89999999999999999998887889999999999999999999999999999999999999999999999999986433
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
.......+.+...+.++++++++++|+.|+..||.|+++||++|+.+.||+||+|+|+||+++|++++|+..+|.+++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~ig 202 (320)
T d1z7wa1 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYG 202 (320)
T ss_dssp HHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ccccchhHHHHHHhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeec
Confidence 33444444455555678999999999998889999999999999977899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||.+++.+..+.+.++.+++++.+.+|..+..+.+|+++.|+|+|++++++.|+++||+++||+||++++++++++++.
T Consensus 203 ve~~~s~~~~~~~~~~~~~~gig~~~~~~~~~~~~id~~~~V~d~e~~~a~~~l~~~eGi~ve~ssga~~aaa~k~a~~~ 282 (320)
T d1z7wa1 203 VEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRP 282 (320)
T ss_dssp EEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSG
T ss_pred ccccCCccccCCCCCCceeeeccCCcCcchhhhhhcceeeccCHHHHHHHHHHHHHHCCEEEehHHHHHHHHHHHHHhhc
Confidence 99999998888888888899999998999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCeEEEEecCCCcCCcchhhcHHHHHHhhcccccC
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 278 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
..++++||+|+||+|.||+|+.+||+|+++...+++||
T Consensus 283 ~~~~~~VV~i~~d~G~kYlst~~~d~~~~e~~~~~~~~ 320 (320)
T d1z7wa1 283 ENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 320 (320)
T ss_dssp GGTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTCCCCC
T ss_pred cCCCCEEEEEECCCchhhcccccCHHHHHHHhcCCCCC
Confidence 56889999999999999999999999999999999986
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-55 Score=391.71 Aligned_cols=271 Identities=38% Similarity=0.619 Sum_probs=237.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+|.++|+++++ ++|+++|+||||+|+|++|+++|++|+||||+++++.|++.|+.|||+|+.++....
T Consensus 76 fKdRga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~ 154 (355)
T d1jbqa_ 76 VKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNAR 154 (355)
T ss_dssp THHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC---
T ss_pred HHHHHHHHHHHHHHHcCCcccC-ceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEeccccc
Confidence 8999999999999999998876 579999999999999999999999999999999999999999999999999975432
Q ss_pred hH---HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
.. +......++..+.+..++.+++.++.+.++||+|+++||++|++++||+||+|+|+||+++|++.+|++.++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~k 234 (355)
T d1jbqa_ 155 FDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCR 234 (355)
T ss_dssp ----CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCE
T ss_pred chhhhhhhhHHHHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcce
Confidence 22 233444445555557888899999888889999999999999988899999999999999999999999999999
Q ss_pred EEEEecCCCCcccC-----CCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHH
Q 023695 158 LYGIEPTESPVLSG-----GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232 (278)
Q Consensus 158 vigV~~~~~~~~~~-----~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa 232 (278)
|++|+|++++.+.. .....+.+++++.+..+...+...+++.+.|+|+|++++++.|++++||++||+||+++++
T Consensus 235 ii~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa 314 (355)
T d1jbqa_ 235 IIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAV 314 (355)
T ss_dssp EEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred EEeecccCCcccccccccccccccccccccccccchhhhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHH
Confidence 99999999975532 2233456778888777777888899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHHHhhc
Q 023695 233 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAES 273 (278)
Q Consensus 233 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~ 273 (278)
+++++++. .++++||+|+||+|.||+|+.|+|+|+...+-
T Consensus 315 ~l~~~~~~-~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~ 354 (355)
T d1jbqa_ 315 AVKAAQEL-QEGQRCVVILPDSVRNYMTKFLSDRWMLQKGF 354 (355)
T ss_dssp HHHHGGGC-CTTCEEEEEECBBGGGGTTTTTCHHHHHHTTC
T ss_pred HHHHHHhc-CCcCEEEEEECCCCccccccccCHHHHHHCCC
Confidence 99998774 37899999999999999999999999887654
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.7e-56 Score=385.79 Aligned_cols=256 Identities=52% Similarity=0.793 Sum_probs=235.5
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.+|.++|..++ .|+++|+||||+|+|++|+.+|++|++|||+++++.|+++++.+||+|+.++...+
T Consensus 36 fK~Rga~~~i~~a~~~g~~~~---~vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~ 112 (293)
T d1o58a_ 36 VKDRPALFMILDAEKRGLLKN---GIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 112 (293)
T ss_dssp TTHHHHHHHHHHHHHTTCCTT---CEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred hHHHHHHHHHHHHHHcCCCCc---ceEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEEecCcch
Confidence 899999999999999998654 49999999999999999999999999999999999999999999999999987544
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCC-CcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP-NIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~-~~~vi 159 (278)
.......+.+++++. +++|+++|+|+.++..|+.+++.||++|+.++||+||+|+|+||+++|++.+||+..+ .+|||
T Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii 191 (293)
T d1o58a_ 113 MKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIV 191 (293)
T ss_dssp HHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEE
T ss_pred hhHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEE
Confidence 555666777777775 7899999999988788999999999999987899999999999999999999998654 59999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|||++++++..+.+.++.+++++.+..|..+++..+|+++.|+|+|++++++.|++++||++||+||++++++++++++
T Consensus 192 ~vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~a~~ 271 (293)
T d1o58a_ 192 AVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQK 271 (293)
T ss_dssp EEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCccccCCCcCCcccccCCCCccchhhhhhhCcEEEEECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHHH
Confidence 99999999998888888889999999889989999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCeEEEEecCCCcCCcch
Q 023695 240 PENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 240 ~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
. .++++||+|+||+|+||+|+
T Consensus 272 ~-~~~~~Vv~i~~d~g~kYls~ 292 (293)
T d1o58a_ 272 L-GPDARVVTVAPDHAERYLSI 292 (293)
T ss_dssp S-CTTCCEEEEECBBGGGCTTT
T ss_pred c-CCcCEEEEEECCCCcccccC
Confidence 5 36889999999999999996
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.5e-55 Score=381.69 Aligned_cols=262 Identities=52% Similarity=0.868 Sum_probs=240.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~-~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||+|++.++|.+|+++|.++++. ++|+++|+||||.|+|++|+.+|++|++|||+.+++.|++.++.+|++++.+....
T Consensus 39 fK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~ 118 (302)
T d1ve1a1 39 IKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPER 118 (302)
T ss_dssp TTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhhhccCcceeEeeecccchheeehhhhhhhcchhccccc
Confidence 89999999999999999888753 57999999999999999999999999999999999999999999999999999755
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEE
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 159 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vi 159 (278)
+..+....+.+.+++. +++|++||+|+.+++.||.|+++||++|++++||+||+|+|+||+++|++++|+..+|+++||
T Consensus 119 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~ii 197 (302)
T d1ve1a1 119 RMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVI 197 (302)
T ss_dssp HHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEE
T ss_pred chHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEE
Confidence 5555566666666664 789999999999888899999999999998789999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhc
Q 023695 160 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 239 (278)
Q Consensus 160 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~ 239 (278)
+|||++++.+..+....+.+++++.+..|..++.++.++.+.|+|+|++++++.|++++||+++|+||++++++++++++
T Consensus 198 gve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~~~~ 277 (302)
T d1ve1a1 198 AVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE 277 (302)
T ss_dssp EEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHH
T ss_pred EEEecccceeeeccccCcccCccCCCcCCchhhhhcceeeeecCHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHHhHH
Confidence 99999999888777777788899988888888899999999999999999999999999999999999999999998765
Q ss_pred CCCCCCeEEEEecCCCcCCcchhhc
Q 023695 240 PENAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 240 ~~~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
. .++++||+|+|++|+||+||.+|
T Consensus 278 ~-~~~~~Vv~i~~g~G~kY~st~~f 301 (302)
T d1ve1a1 278 L-GPGKRVACISPDGGWKYLSTPLY 301 (302)
T ss_dssp H-CTTCEEEEEECBBSGGGTTSTTT
T ss_pred h-CccCeEEEEECCCCchhcChhhc
Confidence 4 47899999999999999999776
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=100.00 E-value=7.5e-54 Score=372.79 Aligned_cols=253 Identities=44% Similarity=0.791 Sum_probs=226.3
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+|.++|.++++ .+|+++|+||||+|+|++|+++|++|+||||+++++.|+++|+.+||+|+.++...+
T Consensus 39 fK~Rga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~ 117 (292)
T d2bhsa1 39 VKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG 117 (292)
T ss_dssp THHHHHHHHHHHHHHTTSCCTT-SEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTH
T ss_pred cHHHHHHHHHHHHHHhCCcCCC-ceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccc
Confidence 8999999999999999998876 579999999999999999999999999999999999999999999999999987555
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
..++...+.+..++. +.++.+||+|+.++..||.++++||++|+++.||++|+|+|+||+++|++.++|+.+++++|++
T Consensus 118 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~ 196 (292)
T d2bhsa1 118 MEGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVG 196 (292)
T ss_dssp HHHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEE
T ss_pred hHHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEE
Confidence 556666666666664 7889999999998889999999999999987899999999999999999999999999999999
Q ss_pred EecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcC
Q 023695 161 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 240 (278)
Q Consensus 161 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~ 240 (278)
|||++++++....... .+..+..+.....++++.|+|+|+++++++|+++|||++||+||+++++++++++.+
T Consensus 197 Vep~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~~~~~ 269 (292)
T d2bhsa1 197 LQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKAN 269 (292)
T ss_dssp EEECTTCCCTTCCCCC-------TTTCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTC
T ss_pred eccccccccccccccc-------cccccccccccccceEEEcCHHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHHHHHC
Confidence 9999998775433221 122344556778899999999999999999999999999999999999999998775
Q ss_pred CCCCCeEEEEecCCCcCCcchhhc
Q 023695 241 ENAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 241 ~~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
++++||+|+|++|+||+||.+|
T Consensus 270 --~~~~VV~il~~~G~kYlst~~~ 291 (292)
T d2bhsa1 270 --PDAVVVAIICDRGDRYLSTGVF 291 (292)
T ss_dssp --TTCEEEEEECBBSGGGGGGTCC
T ss_pred --cCCeEEEEECCCCccccccccc
Confidence 6889999999999999999887
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=1.2e-52 Score=367.94 Aligned_cols=263 Identities=55% Similarity=0.872 Sum_probs=230.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||+|.++|.+|+++|.+.++ ++||++||||||.|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++..+
T Consensus 40 fK~RgA~~~i~~a~~~g~~~~~-~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~ 118 (310)
T d1y7la1 40 VKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 118 (310)
T ss_dssp THHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH
T ss_pred CHHHHHHHHHHHHHHcCCCCCC-ceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccc
Confidence 8999999999999999998887 579999999999999999999999999999999999999999999999999986432
Q ss_pred hHHHHHHHH-HHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHh-hCCCcEE
Q 023695 81 MKGAVQKAE-EILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKL 158 (278)
Q Consensus 81 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~-~~~~~~v 158 (278)
..+...... ...+...+.+++++++|+.++..|+.+++.||++|+++.||+||+|+|+||+++|++.++|. ..+.+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~ 198 (310)
T d1y7la1 119 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITS 198 (310)
T ss_dssp HHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEE
T ss_pred cchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhccccee
Confidence 222222222 22233346788999999988788999999999999987899999999999999999999985 7899999
Q ss_pred EEEecCCCCccc----C--CCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHH
Q 023695 159 YGIEPTESPVLS----G--GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 232 (278)
Q Consensus 159 igV~~~~~~~~~----~--~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa 232 (278)
++|+|.+++.+. + ....++.+.+++.+..|..++....++++.|+|+|+++++++|++++|+++||+||+++++
T Consensus 199 i~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laa 278 (310)
T d1y7la1 199 VAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAA 278 (310)
T ss_dssp EEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHH
T ss_pred ccccccCchhhhhhhcCCccccCCceeeecccccccHHHhhhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHH
Confidence 999999987543 1 1234566788988888888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEecCCCcCCcchhhc
Q 023695 233 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLF 264 (278)
Q Consensus 233 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~ 264 (278)
++++++..+.+++++|+|+||+|.||+|+.+|
T Consensus 279 a~~~a~~~~~~~~~vV~vlcd~g~kY~~t~~~ 310 (310)
T d1y7la1 279 ADRLAKLPEFADKLIVVILPSASERYLSTALF 310 (310)
T ss_dssp HHHHHTSGGGTTCEEEEEECBBCSSCCCTTTC
T ss_pred HHHHHhhccCCcCEEEEEECCCcchhcCCCCC
Confidence 99998877667899999999999999999887
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=1.1e-51 Score=368.22 Aligned_cols=251 Identities=23% Similarity=0.331 Sum_probs=216.2
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.++|.+|.+ .++++ .+||++|+||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.++...+
T Consensus 125 fKdR~A~~~i~~A~~--~~~~g-~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~ 201 (382)
T d1wkva1 125 VKDRPAVEIISRLSR--RVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPS 201 (382)
T ss_dssp TTHHHHHHHHHHHTT--TSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSS
T ss_pred cHHHHHHHHHHHHHh--ccCCC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcchh
Confidence 899999999999854 45666 469999999999999999999999999999999999999999999999999987555
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
..+...++.+.+++. +++|++||+||.++..||.|++.||++|+. ..+|+||+|+|+||+++|+++++|+.+|++|
T Consensus 202 ~~~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vk 280 (382)
T d1wkva1 202 TVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIR 280 (382)
T ss_dssp SGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCE
T ss_pred hHHHHHHHhhhcccc-CccccccccccceeeehhhcchHHHHHHhhcCCCceeEEEEecccccccccceeehhhhCCccc
Confidence 556666666666664 789999999999989999999999999983 3589999999999999999999999999999
Q ss_pred EEEEecCCCCcccCCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHH
Q 023695 158 LYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 237 (278)
Q Consensus 158 vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~ 237 (278)
||+|||.+++.+.+. ..++.+..+.. ..+..+.++.|+|+|+++++++|+++|||++|||||++++++++++
T Consensus 281 iigVep~~~~~i~g~-------~~i~~g~~~~~-~~d~~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a 352 (382)
T d1wkva1 281 AVLVQPAQGDSIPGI-------RRVETGMLWIN-MLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKA 352 (382)
T ss_dssp EEEEEECTTCCCTTC-------CCGGGCCSHHH-HSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHH
T ss_pred eeEeccccccccccc-------cccccCccCcc-ccccceEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHH
Confidence 999999998766421 12222222111 1245678999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEEEecCCCcCCcchhh
Q 023695 238 KRPENAGKLIVVIFPSFGERYLSSVL 263 (278)
Q Consensus 238 ~~~~~~~~~vv~i~~~gG~~~~~~~~ 263 (278)
+++..+++++|+|+||+|+||+|++|
T Consensus 353 ~~~~~~~~~vVvIlcD~G~rYlstiy 378 (382)
T d1wkva1 353 AEGDLEPGDYVVVVPDTGFKYLSLVQ 378 (382)
T ss_dssp HTTCSCSEEEEEEECBBGGGCHHHHH
T ss_pred hhccCCCCCEEEEECCCCccchHhhc
Confidence 88777778999999999999999865
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-49 Score=349.74 Aligned_cols=261 Identities=17% Similarity=0.144 Sum_probs=224.7
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||+++++.|++.++.+|++|+.+++ +
T Consensus 37 fK~R~a~~~~~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~ 109 (319)
T d1p5ja_ 37 FKIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--L 109 (319)
T ss_dssp TTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--C
T ss_pred cHHHHHHHHHHHHHHcCC-----CEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceeccccccc--c
Confidence 899999999999999997 689999999999999999999999999999999999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhC-CCcEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLY 159 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~-~~~~vi 159 (278)
++++.+.+++++++.++++|+++++|+.+ +.||.+++.||++|+...||++|+|+|+||+++|++.+++... +.++++
T Consensus 110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i 188 (319)
T d1p5ja_ 110 LDEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVI 188 (319)
T ss_dssp HHHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEE
T ss_pred chhHHHHHHHHhhccCccccccccccccc-ccccchhhhhhhccccCCCceeeecccCCcchhhhHHHHHHhccCCeeee
Confidence 88999999999988778889999999987 7899999999999997789999999999999999999999865 789999
Q ss_pred EEecCCCCccc----CCCC-----CCccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHH
Q 023695 160 GIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 227 (278)
Q Consensus 160 gV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg 227 (278)
+|+|.+++++. .+++ ..+..++++.+.. ++.+.+++.|..+.|+|+|++++++.|+++|||++||+||
T Consensus 189 ~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~epssa 268 (319)
T d1p5ja_ 189 AMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACG 268 (319)
T ss_dssp EEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred ecccccccccchhhhccccccccccccccccccccccccccchhhhhccceeeecCHHHHHHHHHHHHHHcCEEEeHHHH
Confidence 99999998653 2222 2334567765432 2234467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-------cCCCCCCeEEEEecCCCcCCcchhhcHHHHHHh
Q 023695 228 GAAAAAIEIAK-------RPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 271 (278)
Q Consensus 228 ~a~aa~~~~~~-------~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 271 (278)
++++++++.+. +...+++++|+++|+|||.++++ ++.|.++.
T Consensus 269 ~~~aal~~~~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~~--l~~~~e~~ 317 (319)
T d1p5ja_ 269 AALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ--LRALKEQL 317 (319)
T ss_dssp HHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCEEEEEcCCCCCCHHH--HHHHHHhc
Confidence 99999976431 12246678999998899988874 46665543
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.9e-48 Score=337.39 Aligned_cols=252 Identities=49% Similarity=0.833 Sum_probs=215.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||+|++.++|.+++++|+++++ ++++++|+||||.|+|++|+.+|++|++|||.++++.|+.+++.+|++|+.+++.
T Consensus 40 fK~Rga~~~i~~a~~~g~~~~~-~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~-- 116 (302)
T d1fcja_ 40 VKCRIGANMIWDAEKRGVLKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA-- 116 (302)
T ss_dssp THHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--
T ss_pred CHHHHHHHHHHHHHHcCCCCCC-ceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccc--
Confidence 8999999999999999999887 5799999999999999999999999999999999999999999999999999963
Q ss_pred hHHHHHHHHHH---HHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKGAVQKAEEI---LAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+.+....++.. .++..+.++.++++++.++..|+.+++.||++|+++.||+||+|+|+||+++|++.++|..++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~ 196 (302)
T d1fcja_ 117 KGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTD 196 (302)
T ss_dssp GHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTT
T ss_pred cccchhhhHHHHHHhhhccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeecccccc
Confidence 33333332222 223335678888888888888999999999999987899999999999999999999999887664
Q ss_pred --EEEEecCCCCccc------CCCCCCccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHH
Q 023695 158 --LYGIEPTESPVLS------GGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 229 (278)
Q Consensus 158 --vigV~~~~~~~~~------~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a 229 (278)
++++++..+..+. ......+.+++++.+..++.++...+|+++.|+|+|++++++.|++++||++||+||++
T Consensus 197 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~ 276 (302)
T d1fcja_ 197 LITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAA 276 (302)
T ss_dssp CEEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred ccccccccccchhhhccccccccccCCceecccCCCcCchhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHH
Confidence 5556666655322 11223556788998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCC
Q 023695 230 AAAAIEIAKRPENAGKLIVVIFPSFG 255 (278)
Q Consensus 230 ~aa~~~~~~~~~~~~~~vv~i~~~gG 255 (278)
++++++++++...++++||+|+||+|
T Consensus 277 laaa~~l~~~~~~~~~~vvvilc~~G 302 (302)
T d1fcja_ 277 VAAALKLQEDESFTNKNIVVILPSSG 302 (302)
T ss_dssp HHHHHHHTTSGGGTTCCEEEEECBCC
T ss_pred HHHHHHHHHhcCCCcCeEEEEeCCCC
Confidence 99999988766567899999999887
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-48 Score=344.65 Aligned_cols=251 Identities=22% Similarity=0.275 Sum_probs=218.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+++. .++|+++|+||||.|+|++|+.+|++|++|||+.++..|++.|+.+||+|+.++. .
T Consensus 57 ~KdRga~~~i~~~~~~~~----~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~ 130 (331)
T d1tdja1 57 FKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--N 130 (331)
T ss_dssp STHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--S
T ss_pred hHHHHHHHHHHHHHHhCC----CCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCc--c
Confidence 899999999999876654 2569999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
+++..+.+.+++++. +++|+++++||.+ +.||.+++.||++|. ++||+||+|+|+||+++|++.+|++.+++++||+
T Consensus 131 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ 207 (331)
T d1tdja1 131 FDEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIA 207 (331)
T ss_dssp HHHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cccchhhhhhhhhcC-CCccccccCChHH-hhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEE
Confidence 677777888887775 7999999999988 789999999999998 5799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCCC-----CccccccCCCCC---cccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|||++++++. .+++. .+...++..+.. ++.+.++++|+++.|+|+|++++++.|++++||++||+||+
T Consensus 208 ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~ 287 (331)
T d1tdja1 208 VEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGAL 287 (331)
T ss_dssp EEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHH
T ss_pred ecccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHHHhhccCCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHH
Confidence 9999998763 22221 233455554432 23345788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
++++++++++++..++++||+|+ ||||.+++.
T Consensus 288 alAal~~~~~~~~~~g~~Vv~vl-tGgnid~~~ 319 (331)
T d1tdja1 288 ALAGMKKYIALHNIRGERLAHIL-SGANVNFHG 319 (331)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEEC-CCCCCCTTH
T ss_pred HHHHHHHHHhhccCCcCeEEEEe-CCCCCCcch
Confidence 99999998887777889999998 788877764
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=1.1e-48 Score=343.81 Aligned_cols=255 Identities=20% Similarity=0.257 Sum_probs=216.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||++.+++.++.+.+. ...|+++|+||||+++|++|+++|++|+||||+++++.|+++|+.+||+|+.+++ .
T Consensus 51 fKdRga~~~~~~~~~~~~----~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~ 124 (318)
T d1v71a1 51 FKFRGALNALSQLNEAQR----KAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--Y 124 (318)
T ss_dssp THHHHHHHHHTTCCHHHH----HHCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--T
T ss_pred HHHHHHHHHHHHhhhccc----cceeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccC--C
Confidence 899999999998866554 1469999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 160 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vig 160 (278)
++++.+.+++++++. +++|+++|+||.+ ..||.++++||++|+ +++|+||+|+|+||+++|++.++|..+++++|++
T Consensus 125 ~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~ 201 (318)
T d1v71a1 125 KDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYG 201 (318)
T ss_dssp TTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred chHHHHHHHHHHHhc-CCEecCCcccccc-ccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeec
Confidence 677888888888885 8999999999877 789999999999999 5799999999999999999999999999999999
Q ss_pred EecCCCCccc----CCCC-----CCccccccCCCC---CcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeeccHHH
Q 023695 161 IEPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 228 (278)
Q Consensus 161 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~ 228 (278)
|+|++++++. .+.+ ......++..+. .++.+.++.+++++.|+|+|++++++.|+++|||++||+||+
T Consensus 202 v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~ 281 (318)
T d1v71a1 202 VEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCL 281 (318)
T ss_dssp EEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGH
T ss_pred ccccchhhhhhccccccccccCCCCccccccccCCcchHHHHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeHHHHH
Confidence 9999887542 1111 122233443322 234456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHHHH
Q 023695 229 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 269 (278)
Q Consensus 229 a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 269 (278)
++++++++.++ .++++||+|+ ||||. |...|..++.
T Consensus 282 ~lAa~~~~~~~--~~~~~Vv~il-~GGN~--d~~~~~~~~~ 317 (318)
T d1v71a1 282 SFAAARAMKEK--LKNKRIGIII-SGGNV--DIERYAHFLS 317 (318)
T ss_dssp HHHHHHHTGGG--GTTCEEEEEE-CBCCC--CHHHHHHHHT
T ss_pred HHHHHHHhHHH--cCCCcEEEEe-CCCCC--CHHHHHHHHc
Confidence 99999988766 4678999998 78984 4446666653
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.9e-46 Score=327.25 Aligned_cols=245 Identities=22% Similarity=0.294 Sum_probs=206.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 80 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 80 (278)
||||+|.+++.++.. . ..|+++|+||||.|+|++|+++|++|+||||+++++.|++.++.+|++|+.+++ .
T Consensus 49 fKdRgA~~~~~~~~~--~-----~~vv~aSsGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~ 119 (310)
T d1ve5a1 49 FKARGALSKALALEN--P-----KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--T 119 (310)
T ss_dssp THHHHHHHHHHHSSS--C-----CCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--C
T ss_pred cHHHHHHHHHHHhcc--c-----CCccccCchhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec--c
Confidence 899999887765421 1 359999999999999999999999999999999999999999999999999986 5
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhC---CCCCEEEEecCCCccHHHHHHHHHhhCCCcE
Q 023695 81 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIK 157 (278)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~---~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~ 157 (278)
+++..+.+++.+++. +++|++||+||.+ +.|+.+++.||++|+. ..||++|+|+|+||+++|++.++++.++.++
T Consensus 120 ~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ 197 (310)
T d1ve5a1 120 AKNREEVARALQEET-GYALIHPFDDPLV-IAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTL 197 (310)
T ss_dssp TTTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSE
T ss_pred chhHHHHHHHHHHhc-CCcCCCCCCChhh-HhhhhhhHHHHHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccc
Confidence 677888888888875 7999999999998 7899999999999973 4699999999999999999999999999999
Q ss_pred EEEEecCCCCccc----CCCC------CCccccccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec
Q 023695 158 LYGIEPTESPVLS----GGKP------GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 224 (278)
Q Consensus 158 vigV~~~~~~~~~----~~~~------~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p 224 (278)
+++|||.+++++. .+++ ..+...++... ..++.+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 198 ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~vep 277 (310)
T d1ve5a1 198 VLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEP 277 (310)
T ss_dssp EEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCG
T ss_pred eEEEEeeccchhhhhhccccccccCccccccccccCCCCcchhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcH
Confidence 9999999987653 1221 12233344332 234455678899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcc
Q 023695 225 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 225 ~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 260 (278)
+||+++++++++..+ .+++||+|+ ||||.+++
T Consensus 278 ssaa~lAa~~~~~~~---~~~~Vvvvl-~GgN~d~~ 309 (310)
T d1ve5a1 278 TGALPLAAVLEHGAR---LPQTLALLL-SGGNRDFS 309 (310)
T ss_dssp GGGHHHHHHHHHGGG---SCSEEEEEE-CBCCCCCC
T ss_pred HHHHHHHHHHHhhHh---cCCCEEEEe-CCCCccCC
Confidence 999999999987665 357999999 78997776
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.7e-42 Score=305.84 Aligned_cols=251 Identities=18% Similarity=0.178 Sum_probs=209.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++.+++++|. ++++++|+||||.++|++|+++|++|+|+||++. +..++.+++.+||+|+.+++
T Consensus 60 fK~R~a~~~i~~a~~~g~-----~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~-- 132 (351)
T d1v7ca_ 60 FKDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG-- 132 (351)
T ss_dssp THHHHHHHHHHHHHHTTC-----SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--
T ss_pred hHHHHHHHHHHHHHhcCC-----CeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--
Confidence 899999999999999886 6899999999999999999999999999999876 56788889999999999986
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhh------C
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK------N 153 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~------~ 153 (278)
+++++.+.+++++++. ++++. ++.++.+ +.||.+++.||++|+...+|++++++|+||+++|++.+++.. .
T Consensus 133 ~~~~~~~~a~~l~~~~-~~~~~-~~~~~~~-~~g~~t~~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~ 209 (351)
T d1v7ca_ 133 NFDDALRLTQKLTEAF-PVALV-NSVNPHR-LEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAK 209 (351)
T ss_dssp CHHHHHHHHHHHHHHS-SCEEC-STTSHHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCS
T ss_pred ccchhhhhHHHHhhhh-ccccc-cccCchh-hhhhhhHHHHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhccccc
Confidence 6788999999999886 55555 4446655 789999999999999878999999999999999999987753 4
Q ss_pred CCcEEEEEecCCCCcccCCCCCC---cccc--ccCCC---CCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeecc
Q 023695 154 PNIKLYGIEPTESPVLSGGKPGP---HKIQ--GIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 225 (278)
Q Consensus 154 ~~~~vigV~~~~~~~~~~~~~~~---~~~~--gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~ 225 (278)
+.+++++|++.++..+....+.. +... .+... .....+.++..+.++.|+|+|++++++.|+++|||++||+
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~ps 289 (351)
T d1v7ca_ 210 RLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPA 289 (351)
T ss_dssp SCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHH
T ss_pred CCcceeeeeccccchhhhcccccCCcccccccccccCcccchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECHH
Confidence 67899999999987654332211 1111 11111 1122334677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 226 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 226 sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
||++++++++++++++ .++++||+++|++|+||+|+
T Consensus 290 sg~alAa~~~~~~~~~~~~~~~VV~i~tg~G~k~~~~ 326 (351)
T d1v7ca_ 290 SAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPAT 326 (351)
T ss_dssp HHHHHHHHHHHHHTTCSCSSEEEEEEECBBGGGCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCcccCHHH
Confidence 9999999999998876 46788999998899999996
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-39 Score=291.35 Aligned_cols=256 Identities=22% Similarity=0.259 Sum_probs=193.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC---CCCHHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~---~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
||||++.+++..|.++|.. +.++++|+||||+++|++|+++|++|+||||. .....|+.+++.|||+|+.++.
T Consensus 81 ~KdR~a~~~i~~a~~~G~~----~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 156 (386)
T d1v8za1 81 HKTNNAIGQALLAKFMGKT----RLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNS 156 (386)
T ss_dssp THHHHHHHHHHHHHHTTCC----EEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECS
T ss_pred ccchHHHHHHHHHhhcCCc----eeEeecccchHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecC
Confidence 8999999999999999972 56888899999999999999999999999985 4456899999999999999975
Q ss_pred C-CChHHHHHHHHHHH-HhCCCc-----cccCCCCCCCchhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 A-KGMKGAVQKAEEIL-AKTPNA-----YMLQQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 ~-~~~~~~~~~a~~~~-~~~~~~-----~~~~~~~~~~~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
. ..+.++...+.+.. ...... ...++++++.++..||.+++.||.+|+ +..||+||+|+|+|++++|++
T Consensus 157 ~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~ 236 (386)
T d1v8za1 157 GSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIF 236 (386)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHH
Confidence 2 34556655554333 322111 234455666666679999999998887 346899999999999999998
Q ss_pred HHHHhhCCCcEEEEEecCCCCcccC--------CCCC------------------Ccc--ccccCCCCC---cccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESPVLSG--------GKPG------------------PHK--IQGIGAGFV---PGVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~~~~~--------~~~~------------------~~~--~~gl~~~~~---~~~~~~~~ 195 (278)
.+++. ++++++|+|+|.++..... +.+. .+. ..++..... ...+....
T Consensus 237 ~~~~~-~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (386)
T d1v8za1 237 YPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQ 315 (386)
T ss_dssp GGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTT
T ss_pred HHhhh-ccCceEEEEecCcccccccccccccccCccccccchhheeccCCCCcccccccccccccccccchHHHHHHhcC
Confidence 77654 6899999999988754321 1000 000 001110000 01112334
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcchh
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 262 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 262 (278)
.++.+.|+|+|++++++.|+++|||+++|+||++++++++++++. .++++||+++|+.|+||++++
T Consensus 316 ~~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~-~~~~~VV~iltG~G~kD~~~~ 381 (386)
T d1v8za1 316 RAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVNLSGRGDKDLDIV 381 (386)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEEEECBBSGGGHHHH
T ss_pred ceEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHHHHc-CCCCEEEEEeCCCccccHHHH
Confidence 457899999999999999999999999999999999999998875 478999999966699999863
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.8e-39 Score=297.63 Aligned_cols=254 Identities=17% Similarity=0.130 Sum_probs=206.1
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAK 79 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~ 79 (278)
||||++.+++..+.+.+..+.+..+|+++|+||||+|+|++|+++|++|+||||.+ .+..|+.+++.+||+|+.+++
T Consensus 153 fKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g-- 230 (477)
T d1e5xa_ 153 FKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT-- 230 (477)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--
T ss_pred cHHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--
Confidence 89999999999998876666666789999999999999999999999999999975 688899999999999999986
Q ss_pred ChHHHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCC-CCCEEEEecCCCccHHHHHHHHHhh------
Q 023695 80 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK------ 152 (278)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~-~~d~iv~~vG~Gg~~aGi~~~~k~~------ 152 (278)
+++++.+.+++++++. + +|+.++.||.+ +.|++|++.||++|+.+ .||++++|+|+||+++|++.+++..
T Consensus 231 ~~dda~~~~~e~a~~~-~-~~~~~~~N~~~-~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~ 307 (477)
T d1e5xa_ 231 DFDGCMKLIREITAEL-P-IYLANSLNSLR-LEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLV 307 (477)
T ss_dssp CHHHHHHHHHHHHHHS-C-EEEGGGSHHHH-HHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSS
T ss_pred CchhhHHHhhhhcccc-c-eeccccccccc-chhhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCcc
Confidence 7899999999998875 4 45667778887 67999999999999964 5999999999999999999999864
Q ss_pred CCCcEEEEEecCCCCccc----CCCC-------CCccccccCCCCCcccc------cccccCeEEEeCHHHHHHHHHHHH
Q 023695 153 NPNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLA 215 (278)
Q Consensus 153 ~~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~ 215 (278)
...+++++|++++++++. .+.. ..+...++..+ .|..+ .....+.++.|+|+|++++++. +
T Consensus 308 ~~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~-~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~l-~ 385 (477)
T d1e5xa_ 308 DRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG-DPVSIDRAVYALKKCNGIVEEATEEELMDAMAQ-A 385 (477)
T ss_dssp SCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHH-H
T ss_pred ccCceEEEEeccchhhHHHHHHcCCCcccccccccccccccccc-cccchHHHHHHHhhcCceEEecCHHHHHHHHHH-H
Confidence 246799999999997653 2221 11222333222 12221 1344567899999999999975 6
Q ss_pred HhcCceeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCcch
Q 023695 216 LKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 216 ~~~Gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 261 (278)
+++|+++||+||+++++++++.+++. .++++||+++|++|.||.+.
T Consensus 386 ~~eGi~vePssA~alAal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~ 432 (477)
T d1e5xa_ 386 DSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQS 432 (477)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHH
T ss_pred HHCCcEEChHHHHHHHHHHHHHHhCCCCCCCcEEEEeCcCcccCHHH
Confidence 78999999999999999999998876 57889999999999998764
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.7e-37 Score=273.50 Aligned_cols=256 Identities=21% Similarity=0.254 Sum_probs=187.9
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~---~~~~~~~~~~Ga~v~~~~~ 77 (278)
||||++..++..|++.|+ .+.++++|+||||.++|++|+++|++|+||||+..+ ..|+.+|+.|||+|+.++.
T Consensus 85 ~K~R~a~~~i~~A~~~G~----~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~ 160 (390)
T d1qopb_ 85 HKTNQVLGQALLAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160 (390)
T ss_dssp THHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred cchhHHHHHHHHHhhcCC----ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEecC
Confidence 899999999999999998 256778999999999999999999999999998654 5679999999999999974
Q ss_pred -CCChHHHHHHH-HHHHHhCCCccccCCCC-CCC----chhhhhhchHHHHHhhh----CCCCCEEEEecCCCccHHHHH
Q 023695 78 -AKGMKGAVQKA-EEILAKTPNAYMLQQFE-NPA----NPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 146 (278)
Q Consensus 78 -~~~~~~~~~~a-~~~~~~~~~~~~~~~~~-~~~----~~~~g~~t~~~EI~~ql----~~~~d~iv~~vG~Gg~~aGi~ 146 (278)
...+.++...+ +.++...+..+++.... ++. ....++.++|.|+.+|+ +..||+||+|+|+|++++|++
T Consensus 161 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~ 240 (390)
T d1qopb_ 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240 (390)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhhhee
Confidence 23445544444 44444443334433222 221 22468999999998875 346999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCCcccC--------CCCC--------------------CccccccCCCCC---cccccccc
Q 023695 147 KFLKEKNPNIKLYGIEPTESPVLSG--------GKPG--------------------PHKIQGIGAGFV---PGVLEVNI 195 (278)
Q Consensus 147 ~~~k~~~~~~~vigV~~~~~~~~~~--------~~~~--------------------~~~~~gl~~~~~---~~~~~~~~ 195 (278)
.+|++ .+.+++++++|.+...... +.+. .....++..... ...+....
T Consensus 241 ~~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g 319 (390)
T d1qopb_ 241 ADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIG 319 (390)
T ss_dssp GGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTT
T ss_pred ccccc-ccceeEeccccccccccccccccccccCcccccccccccccccCCCccccccccccccccccchhHHHHHHhcC
Confidence 99976 4578999999976543211 1110 001111111111 01122344
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 196 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 196 ~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
.++.+.|+|+|++++++.|++.|||+++|+++.|++++++++++...++++||+++|+.|+|++++
T Consensus 320 ~~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~ 385 (390)
T d1qopb_ 320 RADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFT 385 (390)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHH
T ss_pred ceEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHHhhhcCCCCCEEEEEECCCCccCHHH
Confidence 578999999999999999999999999999899999999988775456666777675559998875
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.6e-35 Score=255.05 Aligned_cols=260 Identities=16% Similarity=0.153 Sum_probs=187.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc---CCEEEEeCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDP 77 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~---Ga~v~~~~~ 77 (278)
||||++.+++.+++++|.- ...++++|+||||.|+|++|+.+|++|++|+|...+..+...+..+ |++++..+.
T Consensus 53 ~K~R~~~~~i~~a~~~g~~---~~~~~~~s~gN~g~a~A~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 129 (325)
T d1j0aa_ 53 NKIRKLEYLLGDALSKGAD---VVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKD 129 (325)
T ss_dssp THHHHHHHHHHHHHHTTCS---EEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCS
T ss_pred hHHHHHHHHHHHHHHCCCC---eeEEEeeCcchHHHHHHHHHhhhcCceEEEeecccccchhhhhccccceeEEeccCcc
Confidence 7999999999999999861 1234556889999999999999999999999988776655555444 334433333
Q ss_pred CCChHH-HHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCc
Q 023695 78 AKGMKG-AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNI 156 (278)
Q Consensus 78 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~ 156 (278)
...... ....+.....+....+++.++.+......++.+++.|+.+|.+..||+||+|+|+|++++|+..+++..++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~ 209 (325)
T d1j0aa_ 130 SFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDI 209 (325)
T ss_dssp TTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCC
T ss_pred cccchHHHHHHHHHHHhhccCceeeecCCCccccccccchhhcccccccccccceeecccccchhhhhHHHHHHhhCccc
Confidence 211111 1222233323333445555544444446788999999999998889999999999999999999999999999
Q ss_pred EEEEEecCCCCcccCCCCC---CccccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHhcCceeec-cHHHHHHH
Q 023695 157 KLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAA 232 (278)
Q Consensus 157 ~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~Gi~~~p-~sg~a~aa 232 (278)
++++|++............ ....+..+.+........+..+..+.|+|+|++++++.|++++||++|| |||+++++
T Consensus 210 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~ 289 (325)
T d1j0aa_ 210 RPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYG 289 (325)
T ss_dssp EEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHH
T ss_pred cccccccccchhhhhhhhcccccccccccCCCcccchhhhhceecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHH
Confidence 9999999887643210000 0111222222223333456677889999999999999999999999999 79999999
Q ss_pred HHHHHhcCCCCCCeEEEEecCCCcCCcchhhcHHH
Q 023695 233 AIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 267 (278)
Q Consensus 233 ~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 267 (278)
++++++++. .+++||+|+ |||+ +...-|.+.
T Consensus 290 l~~~~~~~~-~~~~vv~i~-tGGl--~g~~~~~~~ 320 (325)
T d1j0aa_ 290 LVDLARKGE-LGEKILFIH-TGGI--SGTFHYGDK 320 (325)
T ss_dssp HHHHHHTTC-SCSEEEEEE-CCCH--HHHHHTHHH
T ss_pred HHHHHHcCC-CCCeEEEEE-CCch--HHHHHHHHH
Confidence 999998875 578988888 8898 444444443
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Probab=100.00 E-value=1.5e-32 Score=239.74 Aligned_cols=253 Identities=16% Similarity=0.103 Sum_probs=182.2
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHcCCEEE
Q 023695 2 LQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELV 73 (278)
Q Consensus 2 K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~--------~~~~~~~~~Ga~v~ 73 (278)
|||++.+++.+++++|. ....++++|+||||.|+|++|+.+|++|++|||+..+. .+.+.++.+|+.++
T Consensus 51 K~R~~~~~i~~a~~~g~---~~v~~~~~s~gN~g~A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~ 127 (338)
T d1tyza_ 51 KTRKLEYLIPEALAQGC---DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVR 127 (338)
T ss_dssp HHHHHHHHHHHHHHTTC---CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHCCC---CeEEEEccCCchHHHHHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccc
Confidence 99999999999999987 11233457899999999999999999999999986543 45667889999999
Q ss_pred EeCCCCCh--H-HHHHHHHHHHHhCCCccccCCCCCCCchhhhhhchHHHHHhh-----hCCCCCEEEEecCCCccHHHH
Q 023695 74 LTDPAKGM--K-GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG-----SGGRIDALVSGIGTGGTITGA 145 (278)
Q Consensus 74 ~~~~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~EI~~q-----l~~~~d~iv~~vG~Gg~~aGi 145 (278)
.++...+. . ...+.........++.++.+++.++.. ..+..+.+.|+..| ....||+||+|+|+|++++|+
T Consensus 128 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~ 206 (338)
T d1tyza_ 128 LVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHP-LGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGM 206 (338)
T ss_dssp CCCC-------CHHHHHHHHHHHTTCCEEEECGGGTSST-TTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHH
T ss_pred cccCCcchhHHHHHHHHHhhhhhcccceeeecccCccCc-cccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHH
Confidence 99863221 1 122333333344445555555444433 44555555554333 345799999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCCcccCCCCC----CccccccCC---CCCcccccccccCeEEEeCHHHHHHHHHHHHHhc
Q 023695 146 GKFLKEKNPNIKLYGIEPTESPVLSGGKPG----PHKIQGIGA---GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKE 218 (278)
Q Consensus 146 ~~~~k~~~~~~~vigV~~~~~~~~~~~~~~----~~~~~gl~~---~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 218 (278)
+.+|+..++.++++++++..++........ ......... ......+..+++++.+.|+|+|++++++.|+++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~e 286 (338)
T d1tyza_ 207 VVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTE 286 (338)
T ss_dssp HHHHHTTTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccceeeccchhhhccccccccccccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHh
Confidence 999999999999999998887543210000 000000111 1123344577888999999999999999999999
Q ss_pred Cceeec-cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCcCCc
Q 023695 219 GLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 259 (278)
Q Consensus 219 Gi~~~p-~sg~a~aa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 259 (278)
||++|| +||+++++++++++++. .++++||+|+ |||...+
T Consensus 287 GI~~eP~~s~~a~a~l~~~~~~~~~~~g~~Vv~i~-TGG~~~~ 328 (338)
T d1tyza_ 287 GMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH-LGGVPAL 328 (338)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGG
T ss_pred CCcCChHHHHHHHHHHHHHHhcCCCCCcCeEEEEE-CCchhhH
Confidence 999999 68999999999998876 4688888888 8887444
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Probab=99.98 E-value=3.1e-32 Score=238.47 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=186.9
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-----------HHHHHHHcCC
Q 023695 2 LQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-----------RRIILRAFGA 70 (278)
Q Consensus 2 K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~-----------~~~~~~~~Ga 70 (278)
|+|++.++|.+++++|. ....++++|+||||+|+|++|+++|++|++|||.+++.. ++..++.+|+
T Consensus 51 K~R~~~~~i~~a~~~g~---~~i~~~~as~gN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~ 127 (341)
T d1f2da_ 51 KLRKLEYIVPDIVEGDY---THLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGA 127 (341)
T ss_dssp HHHHHTTTHHHHHHSCC---SEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHCCC---CEEEEEccCcchHHHHHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccc
Confidence 99999999999999987 112345678899999999999999999999999877643 4567788999
Q ss_pred EEEEeCCCCCh---HHHHHHHHHHHHhCCCccccCCCC--CCCchhhhhhchHHHHHhhh---CCCCCEEEEecCCCccH
Q 023695 71 ELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFE--NPANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTI 142 (278)
Q Consensus 71 ~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~g~~t~~~EI~~ql---~~~~d~iv~~vG~Gg~~ 142 (278)
++..++...+. .................++.+.+. ++.. ..++.+.+.++.+|+ ...||++|+|+|+|+++
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~ 206 (341)
T d1f2da_ 128 DVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTT 206 (341)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHH
T ss_pred cccccCCchhhHHHHHHHHHHHHHHhhccCccccCCcccccccc-hhhehhhhHHHHHHHhhccCCceEEEEecccccch
Confidence 99999863221 122333333333433444443332 3333 567777777777664 45799999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCCCcccCCCC---CCcc--ccccCCCCCcccccccccCeEEEeCHHHHHHHHHHHHHh
Q 023695 143 TGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHK--IQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALK 217 (278)
Q Consensus 143 aGi~~~~k~~~~~~~vigV~~~~~~~~~~~~~---~~~~--~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 217 (278)
+|++.+++...+.++++++.+........... .... ......+.....+..+..+..+.|+|+|++++++.|++.
T Consensus 207 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~ 286 (341)
T d1f2da_ 207 AGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQ 286 (341)
T ss_dssp HHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcccccccccccccchhhhhhhhhccccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHH
Confidence 99999999999999999999887753211000 0000 011111222334456778888999999999999999999
Q ss_pred cCceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCcCCcc
Q 023695 218 EGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 260 (278)
Q Consensus 218 ~Gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 260 (278)
|||++|| +||++++++.++++++.. ++++||+|+ |||..++.
T Consensus 287 eGI~veP~ys~~a~agl~~l~~~~~i~~~~~Vv~i~-TGG~~~~~ 330 (341)
T d1f2da_ 287 EGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVH-LGGAPALS 330 (341)
T ss_dssp HSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGG
T ss_pred hCcccChhhhHHHHHHHHHHHHcCCCCCcCeEEEEE-CCCcccHH
Confidence 9999999 589999999999988774 677888888 89986654
|
| >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.9e-20 Score=165.24 Aligned_cols=251 Identities=11% Similarity=0.028 Sum_probs=169.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCC
Q 023695 1 MLQKIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPA-SMSLERRIILRAFGAELVLTDPA 78 (278)
Q Consensus 1 ~K~R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~-G~~~~vv~p~-~~~~~~~~~~~~~Ga~v~~~~~~ 78 (278)
||||++..+...+...+. .+..+|+++||||+|.|++.+.+.. +++++|+.|. .++..+..+|..+|++|+.+.-.
T Consensus 106 FKD~a~~~~~~~~~~~~~--~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~ 183 (428)
T d1vb3a1 106 FKDFGGRFMAQMLTHIAG--DKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAID 183 (428)
T ss_dssp THHHHHHHHHHHHHHHTT--TCCEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEE
T ss_pred cccchhhHHHHHHhhhcc--cccceeeecCCCCcchhHHHHHhCccccceEEEecCCCCcHHHHHHHhhccCCceEEecC
Confidence 899998775443332221 1226799999999999999887766 5889999996 57888888999999987554433
Q ss_pred CChHHHHHHHHHHHHhCC-----CccccCCCCCCCchhhhhhchHHHHHhhhCC---CCCEEEEecCCCccHHHHHHHHH
Q 023695 79 KGMKGAVQKAEEILAKTP-----NAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLK 150 (278)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~EI~~ql~~---~~d~iv~~vG~Gg~~aGi~~~~k 150 (278)
.++++|++.++++..+.+ ...-++. -|+.+ +.++.+.++|++.|+.. .++.+++|.|+.|.+.+.+.+.+
T Consensus 184 G~fDDcq~lvk~~f~d~~~~~~~~l~s~NS-IN~~R-l~~Q~vyyf~a~~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~ 261 (428)
T d1vb3a1 184 GDFDACQALVKQAFDDEELKVALGLNSANS-INISR-LLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKS 261 (428)
T ss_dssp SCHHHHHHHHHHGGGCHHHHHHHTEECCST-TSHHH-HHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhhhhhhhcCCeeeecc-cChhH-HhhhHHHHHHHHHHhccccCCceEEeccHHHHHHHHHHHHhhh
Confidence 489999999988865421 1111111 24444 67999999999999853 47799999999999999888877
Q ss_pred hhCCCcEEEEEecCCCCccc----CCCCC-----CccccccCCCCCccccc----------ccccCeEEEeCHHHHHHHH
Q 023695 151 EKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVLE----------VNIIDEVVQVSSDEAIETA 211 (278)
Q Consensus 151 ~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~~----------~~~~~~~~~v~d~e~~~a~ 211 (278)
.-.|.-+++...-+. +.+. .|... .+....|..+ .|.++. .+.....+.++|+|....+
T Consensus 262 mGLPi~~~i~AtN~N-dil~~f~~tG~y~~~~~~~TlSpAMDI~-~pSNfERl~~l~~~~~~~l~~~~~~~~dde~~~~i 339 (428)
T d1vb3a1 262 LGLPVKRFIAATNVN-DTVPRFLHDGQWSPKATQATLSNAMDVS-QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQT 339 (428)
T ss_dssp TTCCCSEEEEEECSC-CHHHHHHHHSCCCCCCCCCCSSGGGCCS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHH
T ss_pred cCCceeeeecccccC-ccchhhhhCCceecccccccCchHhhhc-ccCCHHHHHHHHHhhhhhhcccceeeccHHHHHHH
Confidence 666666666554333 2221 22221 2222333222 222221 1222345666667777777
Q ss_pred HHHHHhcCceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 212 KLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 212 ~~l~~~~Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
+..++++|+++||.||++++++.+.. .++...|++.|.+..|+.+.
T Consensus 340 ~~~~~~~gyi~DPHTAvg~~a~~~~~----~~~~~~V~LaTAHP~KF~d~ 385 (428)
T d1vb3a1 340 MRELKELGYTSEPHAAVAYRALRDQL----NPGEYGLFLGTAHPAKFKES 385 (428)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHTTC----CTTCEEEEEECBCGGGGHHH
T ss_pred HHHHHHcCceeCCcHHHHHHHHHHhh----CCCCCEEEEECcCchhCHHH
Confidence 77788899999999999998886532 34567888888888876653
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=1.5e-10 Score=104.35 Aligned_cols=235 Identities=14% Similarity=0.080 Sum_probs=151.0
Q ss_pred eEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCC-CCHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCC--Cc
Q 023695 24 SVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPAS-MSLERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTP--NA 98 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~-~~G~~~~vv~p~~-~~~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~--~~ 98 (278)
-+|++||||-+|.|.+.+.+ +-+++++|+.|.+ +++...++|...++ +|+.+.-..++++|.+...++..+.+ ..
T Consensus 153 ~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~ 232 (511)
T d1kl7a_ 153 ITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSK 232 (511)
T ss_dssp EEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--
T ss_pred EEEEEecCCCccHHHHHHhcCCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhcc
Confidence 47999999999999999977 4689999999974 78877777777644 66555443489999999988876542 11
Q ss_pred cccCCCCCCCchh------hhhhchHHHHHhhhCCCCCEEEEecCCCccHHHHHHHHHhhCCCcEEEEEecCCCCccc--
Q 023695 99 YMLQQFENPANPK------IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-- 170 (278)
Q Consensus 99 ~~~~~~~~~~~~~------~g~~t~~~EI~~ql~~~~d~iv~~vG~Gg~~aGi~~~~k~~~~~~~vigV~~~~~~~~~-- 170 (278)
+-+. .-|..||. ..|-+....+..+..+++=.+++|.|+=|.+.+-+.+-+.--|--|+|...-+.. .+.
T Consensus 233 ~~l~-s~NSiNw~Rll~QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~Nd-iL~rf 310 (511)
T d1kl7a_ 233 HNVG-AVNSINWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEND-ILDRF 310 (511)
T ss_dssp CCBC-CCCSCCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCC-HHHHH
T ss_pred cccc-cccceeehhhhhhHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcc-hHHHH
Confidence 1121 22444542 2344444443332223444799999998887766655554445557777654443 221
Q ss_pred --CCCC------CCccccccCCCCCcccccc---------------------------------------------cccC
Q 023695 171 --GGKP------GPHKIQGIGAGFVPGVLEV---------------------------------------------NIID 197 (278)
Q Consensus 171 --~~~~------~~~~~~gl~~~~~~~~~~~---------------------------------------------~~~~ 197 (278)
.|.. .++....|... +|.++.+ .-.-
T Consensus 311 ~~tG~y~~~~~v~~T~SPSMDI~-vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~F 389 (511)
T d1kl7a_ 311 LKSGLYERSDKVAATLSPAMDIL-ISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDF 389 (511)
T ss_dssp HHHSEEECCSSCCCCSCGGGCCS-SCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTE
T ss_pred hcCCCCCCcCcccCcCccHHhhh-hhHHHHHHHHHHhcchhcccchhhhHHHHHHHHHHHHhcCCccccchhhhccccce
Confidence 1211 11211222111 1211110 0012
Q ss_pred eEEEeCHHHHHHHHHHHHHhc----CceeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCcCCcch
Q 023695 198 EVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 261 (278)
Q Consensus 198 ~~~~v~d~e~~~a~~~l~~~~----Gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 261 (278)
....++|+|+.+.++.++++. |.++||.||.++.++.++..+....+...|++-|.+.-|+.+.
T Consensus 390 ~s~svsD~et~~tIk~vye~~~n~~gYllDPHTAVG~~aa~k~~~~~~~~~~p~VvLATAHPaKFpda 457 (511)
T d1kl7a_ 390 TSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADA 457 (511)
T ss_dssp EEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHH
T ss_pred eEEEeCHHHHHHHHHHHHHhcCccCCeEECCcHHHHHHHHHHHHHhccCCCCcEEEEeCcChhhhHHH
Confidence 367899999999999999987 9999999999999999886554344556788888887776654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.46 E-value=0.024 Score=42.16 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=47.3
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
++.++..++||++.+| ..+|.-|...+..++.+|.+++++- .++.|++..+.+|++.....
T Consensus 17 ~a~~~~~~~~g~~vlV-~G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 17 HACRRAGVQLGTTVLV-IGAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCCCCEEEE-EcccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEec
Confidence 4455566889876555 4689999999999999999866653 35688999999999776554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.46 E-value=0.0076 Score=45.77 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=51.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+.+.++||++.+|.+.+|.-|.++...|+..|.+++.+.. +++|++.++.+|++.+....
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~ 82 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK 82 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence 5677899988888889999999999999999999888764 35789999999998776654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0053 Score=39.93 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=46.6
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023695 10 ISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 70 (278)
Q Consensus 10 l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga 70 (278)
+....+.+.++|+++.+|...+|.-|....-.++.+|.+++.+... ++|.+.++.+||
T Consensus 20 l~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s---~~k~~~~~~lGA 77 (77)
T d1o8ca2 20 VMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGA 77 (77)
T ss_dssp HHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTE
T ss_pred HHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC---HHHHHHHHHCCC
Confidence 3444566777888888888888999999999999999998887654 477888888886
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0098 Score=44.83 Aligned_cols=59 Identities=24% Similarity=0.187 Sum_probs=47.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+.++||++.+|...+|.-|..+...|+..|.++++... ++.|++.++.+||+.++-.
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~~ 80 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVINY 80 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEEC
Confidence 4578899987778778899999999999999998777744 4688888999999765543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.19 E-value=0.022 Score=42.19 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
+++++..++||++.+| ..+|.-|...+..++.+|.+++++ +.++.|++..+.+||+.+....
T Consensus 18 ~al~~~~~~~g~~VlV-~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~~ 79 (166)
T d1llua2 18 KGLKQTNARPGQWVAI-SGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNAR 79 (166)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhCCCCCCEEEE-eeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCcccccccc
Confidence 4455556888876555 667999999999999999876666 3357889999999997665443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.043 Score=40.83 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=49.4
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 11 ~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
.++.++..++||++ ++...+|.-|...+..++.+|.+-++++. ..+.|++..+.+||+.+....
T Consensus 16 ~~a~~~~~~~~gd~-VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~ 79 (171)
T d1pl8a2 16 IHACRRGGVTLGHK-VLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS 79 (171)
T ss_dssp HHHHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHhCCCCCCE-EEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence 35667777899865 55557799999999999999996555543 357889999999998776664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.037 Score=40.87 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 78 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 78 (278)
+++++..++||++.+| ..+|.-|...+..++..|.+++++ +.++.|++.++.+|++.+....+
T Consensus 18 ~al~~~~~~~g~~vlv-~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~ 80 (168)
T d1rjwa2 18 KALKVTGAKPGEWVAI-YGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLK 80 (168)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTT
T ss_pred HHHHHhCCCCCCEEEE-eecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceeccccc
Confidence 3444445788866555 567999999999999999986665 34678999999999988776653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.039 Score=41.19 Aligned_cols=57 Identities=28% Similarity=0.355 Sum_probs=46.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+.++||++.+|...+|..|.+....|+.+|.++++... ++.|++.++.+|++-+.
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi 78 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF 78 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc
Confidence 5677899987777766799999999999999999877764 35788899999996554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.015 Score=43.60 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=47.5
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 11 ~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
-++++++.++||++.+|...+|.-|.+....|+.+|.+++++... +.|++.++.+|++.+.
T Consensus 17 ~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~---~~~~~~~~~lGa~~~i 77 (171)
T d1iz0a2 17 YLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA 77 (171)
T ss_dssp HHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred HHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccc---ccccccccccccceee
Confidence 345566788999776776777999999999999999987776643 4577888889996544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.67 E-value=0.059 Score=39.91 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=48.7
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 11 ~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
-+++++..++|+++.+|...+|..|..++..++..|...+++... ++.|++.++.+|++.+...
T Consensus 17 ~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~ 80 (170)
T d1jvba2 17 YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA 80 (170)
T ss_dssp HHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence 345666778999776666657999999999999999866665554 3688999999999765543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.082 Score=39.62 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=45.8
Q ss_pred HHH-HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 12 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 12 ~a~-~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
++. +.+.++||.+.+|. .+|.-|......++.+|.+ ++++-+ ++.|++.++.+||+.+.-..
T Consensus 18 ~al~~~~~~~~G~~VlV~-GaG~iG~~~~~~ak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~vi~~~ 81 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTLNRR 81 (182)
T ss_dssp HHHHTCSSCCBTCEEEEE-CCSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHHhCCCCCCEEEEE-CCCccchhheeccccccccccccccc---ccccccccccccceEEEecc
Confidence 444 55788898765555 5799999999999999985 444422 56888999999997665443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.36 E-value=0.021 Score=42.78 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 7 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 7 ~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
...+....+.|.++++++.+|.+.+|--|.+..-.|+.+|.+++...... +|.+.++.+|++.+..
T Consensus 9 ~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~---~k~~~~~~lGad~vi~ 74 (167)
T d1tt7a2 9 ALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVIS 74 (167)
T ss_dssp HHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH---HHHHHHHhhcccceEe
Confidence 33344456778777777788888899999999999999999998887654 5788889999987653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.35 E-value=0.13 Score=39.19 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
++.++..++||++.+| ..+|.-|...+..++.+|...++++.. ++.|++..+.+|++.+..+.
T Consensus 16 ~a~~~a~v~~G~tVlV-~GaG~vGl~a~~~ak~~ga~~Vi~~d~--~~~rl~~a~~~Ga~~~~~~~ 78 (195)
T d1kola2 16 HGAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVGDL--NPARLAHAKAQGFEIADLSL 78 (195)
T ss_dssp HHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCEEEETTS
T ss_pred HHHHHhCCCCCCEEEE-ECcCHHHHHHHHHHHhhcccceeeecc--cchhhHhhhhccccEEEeCC
Confidence 4556678899976545 567999999999999999876665533 57899999999999876654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.22 E-value=0.018 Score=43.97 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=50.0
Q ss_pred HcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023695 15 AKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 76 (278)
Q Consensus 15 ~~g~l~~g~~~vv~-assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~ 76 (278)
+.+.++||++.+|. +.+|..|.+....|+.+|.++++++.... .+.+.+.++.+||+.+...
T Consensus 22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 45778999877774 67789999999999999999998886543 4567888899999877654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.05 E-value=0.047 Score=40.89 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=46.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 15 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 15 ~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
+.+.++||++.+|.+.+|..|..+.-.|+.+|.++++... ++.+.+.++.+|++.+..
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~ 76 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD 76 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence 5677899877777677899999999999999999888764 346788899999876544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.06 Score=39.88 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 11 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 11 ~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
-.++++..++||++.+| ..+|.-|...+..++.+|.+.+++.+. +.|++..+.+|++.+...
T Consensus 20 y~al~~~~~~~G~~VlI-~GaG~vG~~a~qlak~~Ga~~i~~~~~---~~~~~~a~~lGad~~i~~ 81 (168)
T d1uufa2 20 YSPLRHWQAGPGKKVGV-VGIGGLGHMGIKLAHAMGAHVVAFTTS---EAKREAAKALGADEVVNS 81 (168)
T ss_dssp HHHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEEET
T ss_pred HHHHHHhCCCCCCEEEE-eccchHHHHHHHHhhcccccchhhccc---hhHHHHHhccCCcEEEEC
Confidence 45667788999976555 467999999999999999998765443 356788889999876543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.70 E-value=0.09 Score=39.28 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=46.0
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
++.++..++||.+.+| ..+|--|...+..|+.+|.+-++++.. ++.|++..+.+||+.+.
T Consensus 18 ~a~~~a~~~~g~~VlI-~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~i 77 (174)
T d1jqba2 18 HGAELADIEMGSSVVV-IGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDIL 77 (174)
T ss_dssp HHHHHTTCCTTCCEEE-ECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEEE
T ss_pred HHHHHhCCCCCCEEEE-EcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCccccc
Confidence 4567788999976555 567999999999999999854444443 57889999999986544
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.049 Score=41.06 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=47.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 13 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 13 a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
..+.|...++++.+|...+|.-|.+..-.|+.+|.+++.+... +.|.+.++.+||+.+.-.
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~---~~k~~~~~~lGad~vi~~ 83 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGASRVLPR 83 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTEEEEEEG
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecc---hhHHHHHHhhcccccccc
Confidence 3455654445577888888999999999999999999987664 366778889999887653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.61 E-value=0.048 Score=41.08 Aligned_cols=68 Identities=25% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 6 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 6 a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
|+..+....+.|.+++|++.+|.+.+|.-|.+.--.|+.+|.+++.....+ .|.+.++.+||+.+.-.
T Consensus 16 A~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~---~k~~~~~~lGa~~vi~~ 83 (176)
T d1xa0a2 16 AALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVLAR 83 (176)
T ss_dssp HHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch---HHHHHHHhcccceeeec
Confidence 333444455678888888889988899999999999999999999887554 56788889999876643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.059 Score=39.96 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 12 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 12 ~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.++++..++||++.+| ..+|..|...+..++.+|.+++++-.. +.|++..+.+||+.+.
T Consensus 18 ~al~~~~~~~g~~vlI-~GaG~vG~~a~q~ak~~G~~vi~~~~~---~~k~~~a~~lGa~~~i 76 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGI-VGLGGIGSMGTLISKAMGAETYVISRS---SRKREDAMKMGADHYI 76 (168)
T ss_dssp HHHHHTTCSTTCEEEE-ECCSHHHHHHHHHHHHHTCEEEEEESS---STTHHHHHHHTCSEEE
T ss_pred HHHHHhCcCCCCEEEE-ECCCCcchhHHHHhhhccccccccccc---hhHHHHhhccCCcEEe
Confidence 5566667899976555 567999999999999999997765433 4578888999996544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.06 E-value=0.17 Score=37.48 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=45.3
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.+.++||.+.+| ..+|--|...+..++.+|.+.+++... ++.|++..+.+|++-++
T Consensus 21 ~~~~~~~~g~~VlI-~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i 78 (174)
T d1f8fa2 21 INALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI 78 (174)
T ss_dssp HTTTCCCTTCEEEE-ESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCEEEE-eCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence 56677899976555 567999999999999999987776644 46888989999985443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.16 Score=38.16 Aligned_cols=63 Identities=11% Similarity=0.206 Sum_probs=44.8
Q ss_pred HcCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 023695 15 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 78 (278)
Q Consensus 15 ~~g~l~~g--~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 78 (278)
+.+.++|| ++.+|.+.+|.-|....-.|+.+|.+.++.+... ++.+....+.+|++.++-...
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~~ 86 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYKT 86 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETTS
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeeccc
Confidence 33567776 4566666689999999999999999877665443 344455566889988776543
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.51 E-value=0.25 Score=36.74 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC---------CCCCHHHHHHHHHcCCEEEE
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP---------ASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p---------~~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+...+.+|.+.|. ...||..|+|.++..++-+. .|++.++|.- ...+++.++.|+..|.+|+.
T Consensus 19 ~~l~~a~~rA~Elgi----~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 92 (190)
T d1vp8a_ 19 ETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 92 (190)
T ss_dssp HHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCEEEE
Confidence 456677788988885 14455556699998877765 3899888752 14578999999999999987
Q ss_pred eCC
Q 023695 75 TDP 77 (278)
Q Consensus 75 ~~~ 77 (278)
...
T Consensus 93 ~tH 95 (190)
T d1vp8a_ 93 QSH 95 (190)
T ss_dssp CCC
T ss_pred ecc
Confidence 653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.70 E-value=0.49 Score=34.67 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
.++||+. ++...+|.-|...+..++.+|...++++.. ++.|++.++.+|++.+...
T Consensus 29 ~~~~g~~-vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~ 84 (172)
T d1h2ba2 29 TLYPGAY-VAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDA 84 (172)
T ss_dssp TCCTTCE-EEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEET
T ss_pred ccCCCCE-EEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecC
Confidence 4678755 555677999999999999999876666543 4688999999999755544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.32 E-value=0.29 Score=36.36 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=46.5
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+.+.++||++ ++....|--|+..+..++.+|.+.+++... ++.|++..+.+|++.+.-
T Consensus 21 ~~~a~v~~G~~-VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~ 79 (174)
T d1e3ia2 21 INTAKVTPGST-CAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN 79 (174)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence 46688999965 555578999999999999999877766654 356889999999976654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=1.1 Score=35.11 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
..|||..++--|.++|....+.|.++++.-
T Consensus 12 v~lITGas~GIG~aiA~~la~~G~~Vv~~~ 41 (257)
T d1xg5a_ 12 LALVTGASGGIGAAVARALVQQGLKVVGCA 41 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 678888889999999999888998866654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.83 E-value=0.3 Score=36.21 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.+.++||++ ++....|--|......++.+|...++++.. ++.|++..+.+||+-+.
T Consensus 20 ~~~a~~~~G~~-VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i 77 (174)
T d1p0fa2 20 VNTAKVTPGST-CAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL 77 (174)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence 46678999965 445567999999999999999877766654 36788888999997665
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.75 E-value=0.44 Score=34.93 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=38.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.+.++||++.+|.. +|--|...+..++.+|-..++.+.. .+.|++..+.+||+-+.
T Consensus 21 ~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~a~~~GAd~~i 78 (175)
T d1cdoa2 21 VNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEKAKVFGATDFV 78 (175)
T ss_dssp HTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCCEEE
T ss_pred HHhhCCCCCCEEEEEe-cCCccchHHHHHHHHhhchheeecc--hHHHHHHHHHcCCcEEE
Confidence 3667899997655554 5556666666666777665555533 35678889999986654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.69 E-value=0.47 Score=35.13 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=45.0
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 75 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 75 (278)
.+.+.++||.+ ++....|--|......|+.+|..-++.+.. ++.|++..+.+||+.++-
T Consensus 22 ~~~~~~~~g~t-VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in 80 (176)
T d1d1ta2 22 VKTGKVKPGST-CVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECIS 80 (176)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEEC
Confidence 46677899864 666678999999999999999765555543 357888999999976553
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.61 E-value=0.28 Score=36.06 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+++.++||++.+| ...|--|......++.+|.+.++.+.. ++.|++..+.+||+-+.
T Consensus 21 ~~~~~~~~G~tVlI-~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i 78 (176)
T d2fzwa2 21 VNTAKLEPGSVCAV-FGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI 78 (176)
T ss_dssp HTTTCCCTTCEEEE-ECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCEEEE-ecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence 35688999976555 455667998899999999887777644 45678888899986544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.59 E-value=1.2 Score=34.88 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=43.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
+..|||.+++.-|+++|..-.+.|.++++.-.... .....+..+.+|.+++.+.-+ .+.++..+...+..++.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 37789999999999999999999998766643211 111223345667776554321 23334444444444443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.53 E-value=1 Score=35.88 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=34.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEe
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLT 75 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~ 75 (278)
+..|||.++|.-|+++|..-...|.++++.-..... ....+....+|.+++.+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~ 80 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAI 80 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEE
Confidence 467999999999999999988899887776443211 11122334556655444
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=90.53 E-value=0.77 Score=35.88 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=45.8
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-----CCCHHHHHHHHHcCCEEEEeCC
Q 023695 18 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-----SMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 18 ~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~-----~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
..+|+++.|||..+|--|+++|..-.+.|.+.++++.. +.....++.++..|+++..+.-
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~ 69 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAAC 69 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcccccccccc
Confidence 35788888999999999999999988999876555532 2334556778889998877653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=89.80 E-value=0.47 Score=37.43 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=47.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH--HHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--RRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~--~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..|||.+++.-|+++|..-.+.|.++++.-....... ..+..+.+|.++..+.-+ .+.++..+..++..++.
T Consensus 11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 85 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6788899999999999999999998777655433322 233446678777655432 23445555556666665
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=89.45 E-value=1.6 Score=32.98 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023695 4 KIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 71 (278)
Q Consensus 4 R~a~~~l~~a~~~-g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~ 71 (278)
++..+.+..+.++ |.-.-.+.+++.-..||.|..+|......|.++++. +....++.....+|++
T Consensus 7 ~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~---d~d~~~~~~~~~~g~~ 72 (201)
T d1c1da1 7 VGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA---DTDTERVAHAVALGHT 72 (201)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEe---cchHHHHHHHHhhccc
Confidence 5666777666543 421223457888899999999999999999887755 2234444444444443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=0.42 Score=32.69 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 023695 20 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 57 (278)
Q Consensus 20 ~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~ 57 (278)
+|+..+|-.-.+|..|+-+|.+|+++|++++++-|..-
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 45555677778999999999999999999999987643
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=88.83 E-value=2.2 Score=33.21 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=43.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--H-HHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--E-RRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~--~-~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..|||..++.-|+++|..-.+.|.++++.-..+... . +....+.+|.++..+.-+ .+.++..+...+..++.
T Consensus 6 ~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 678888889999999999999999876654332111 1 122234567777765532 23344444445554443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.75 E-value=2.4 Score=33.04 Aligned_cols=69 Identities=19% Similarity=0.058 Sum_probs=42.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH----HH--HHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI----IL--RAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~----~~--~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
..|||.+++.-|+++|..-.+.|.++++.-.. ..+++ .+ ...+.+++.+.-+ .+.++..+...+..++.
T Consensus 6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~---~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVS---SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999887665432 22222 22 2245566544321 23444555555555554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=86.58 E-value=3.4 Score=32.16 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
|...|||..++.-|+++|..-.+.|.++++.-.... -+...+.++..|.+++.+.-+ .+.++..+...+..+++
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 337799999999999999999999988766533211 122334556677776554321 23344445555554544
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=86.28 E-value=0.38 Score=30.73 Aligned_cols=49 Identities=8% Similarity=-0.022 Sum_probs=36.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 77 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 77 (278)
++|-.-.+|..|+=++.+|+.+|++++++-|+..++.. ..-.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~-----~~a~dvIT~e~ 50 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAV-----PFQQSVITAEI 50 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGS-----CGGGSEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCccc-----ccccceEEEee
Confidence 35667799999999999999999999999987554421 12336676664
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.13 E-value=2.8 Score=32.73 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=25.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
+..|||..++--|+++|..-...|.++++.-
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~ 37 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIAD 37 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3678888889999999999888888866653
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.75 E-value=2.5 Score=32.86 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=25.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 24 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 24 ~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
..|||.+++--|+++|....+.|.++++.-
T Consensus 5 valITGas~GIG~aia~~la~~Ga~V~i~~ 34 (254)
T d2gdza1 5 VALVTGAAQGIGRAFAEALLLKGAKVALVD 34 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 778999999999999999988898866653
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=5.2 Score=30.75 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
|...|||..++--|+++|..-.+.|.++++.-..... ..-.+.++..|.+++.+.-+ .+.+...+..++..++.
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 4467888899999999999999999997776443211 12234566777776544321 24444455555555555
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=85.55 E-value=1.1 Score=32.62 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023695 14 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 74 (278)
Q Consensus 14 ~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 74 (278)
.+.+.++||++ ++....|--|...+..++.+|...++++..+ +.|++..+.+|++-..
T Consensus 21 ~~~~~vk~Gdt-VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~--~~k~~~a~~~Ga~~~i 78 (176)
T d2jhfa2 21 VKVAKVTQGST-CAVFGLGGVGLSVIMGCKAAGAARIIGVDIN--KDKFAKAKEVGATECV 78 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECSC--GGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCE-EEEECCCCcHHHHHHHHHHcCCceEEeecCc--HHHHHHHHHhCCeeEE
Confidence 46788999965 4445556689899999999987766666543 5667778888875443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.28 E-value=4.4 Score=31.48 Aligned_cols=54 Identities=11% Similarity=-0.029 Sum_probs=34.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEe
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLT 75 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~ 75 (278)
|...|||.+++.-|+++|..-...|.++++.-.... -....+.++..+.+++.+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~ 62 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGS 62 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEE
Confidence 337788888899999999998888887666543211 112233444555555443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=85.16 E-value=2.6 Score=32.74 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=23.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 52 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv 52 (278)
+..|||.+++--|+++|..-...|.++++.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~ 36 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFS 36 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 367888888889999998888888875554
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.92 E-value=2.2 Score=33.10 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=51.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
|...|||.+++.-|+++|..-...|.++++.-... .+.+..+..+...+.++-. +.++..+...+..++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP---EGKEVAEAIGGAFFQVDLE-DERERVRFVEEAAYAL 74 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST---THHHHHHHHTCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999876654432 3455667789998888753 4555556666665554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=84.77 E-value=0.86 Score=31.61 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=37.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 26 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 26 vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
++....|+.|..+|-.-...|.+++++ +..+.+.+.++..|..++..+
T Consensus 3 ~iIiG~G~~G~~la~~L~~~g~~vvvi---d~d~~~~~~~~~~~~~~~~gd 50 (134)
T d2hmva1 3 FAVIGLGRFGGSIVKELHRMGHEVLAV---DINEEKVNAYASYATHAVIAN 50 (134)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCEEE---ESCHHHHHHTTTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEe---cCcHHHHHHHHHhCCcceeee
Confidence 566688999999999999999998887 335677777777777766544
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.43 E-value=5.3 Score=30.80 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=46.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
.|||.+++.-|+++|..-.+.|.++++.-.... -+...+.++..|.+++.+.-+ .+.++..+...+..++.
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 76 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 588899999999999999999998766543211 122345567778777655321 24445555556665655
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.31 E-value=6.6 Score=30.23 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=44.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCC--EEEEeCCCCChHHHHHHHHHHHHhC
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA--ELVLTDPAKGMKGAVQKAEEILAKT 95 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga--~v~~~~~~~~~~~~~~~a~~~~~~~ 95 (278)
+..|||.+++.-|+++|..-...|.++++.- .++.+++.+...+. ..+.++- .+.++..+...+..++.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~---r~~~~~~~~~~~~~~~~~~~~Dv-s~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICD---KDESGGRALEQELPGAVFILCDV-TQEDDVKTLVSETIRRF 77 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHCTTEEEEECCT-TSHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHhcCCCeEEEccC-CCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999877753 23455555544332 3333343 24455555555555544
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=83.83 E-value=5.5 Score=30.73 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=31.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHH
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 64 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~ 64 (278)
+..|||.+++--|.++|..-...|.+++++.........+..
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~ 47 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE 47 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHH
Confidence 367888888889999999988999998888655444444433
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=83.37 E-value=3.3 Score=32.03 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
|...|||.+++--|+++|..-...|.++++.-
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~ 37 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITG 37 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 33678888888899999988888888866653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.36 E-value=2.4 Score=30.59 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=40.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023695 25 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 76 (278)
Q Consensus 25 ~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 76 (278)
++..-.+||.|.++|...++.|.+++++.+ .+.+.+.++..|......+
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r---~~~~~~~~~~~~~~~~~~~ 51 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDI---DAQRIKEIQDRGAIIAEGP 51 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHHTSEEEESS
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHcCCCchhhh
Confidence 577779999999999999999999999854 4677888888887665544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.35 E-value=4 Score=31.96 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 23 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 23 ~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
+..|||..++--|+++|..-...|.++++.-
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~ 35 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITG 35 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3778988889999999999999999877664
|
| >d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein MTH1675 species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.16 E-value=1.5 Score=32.30 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC-------C--CCCHHHHHHHHHcCCEEEE
Q 023695 4 KIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP-------A--SMSLERRIILRAFGAELVL 74 (278)
Q Consensus 4 R~a~~~l~~a~~~g~l~~g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p-------~--~~~~~~~~~~~~~Ga~v~~ 74 (278)
+.+...+.+|.+.|. ...||..|+|.++..++-+ +.-+.++|.- . ..+++.++.|+..|.+|+.
T Consensus 18 ~~l~~a~~ra~elgi----~~iVvAStsG~TA~~~~e~---~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 90 (186)
T d1t57a_ 18 RVLELVGERADQLGI----RNFVVASVSGETALRLSEM---VEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 90 (186)
T ss_dssp HHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTT---CCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHh---cCCCEEEEecccCCCCCCCCccCHHHHHHHHHcCCEEEE
Confidence 456677788888886 1344444569988766433 3446555531 1 3468889999999999987
Q ss_pred eCC
Q 023695 75 TDP 77 (278)
Q Consensus 75 ~~~ 77 (278)
...
T Consensus 91 ~tH 93 (186)
T d1t57a_ 91 GSH 93 (186)
T ss_dssp CSC
T ss_pred ecc
Confidence 653
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.08 E-value=5.8 Score=31.47 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=26.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 53 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~ 53 (278)
|...|||.+++.-|+++|..-...|.++++.-
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~ 43 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIAS 43 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 34679999999999999999999999876654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.75 E-value=3.6 Score=31.97 Aligned_cols=74 Identities=14% Similarity=-0.015 Sum_probs=51.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023695 22 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 95 (278)
Q Consensus 22 g~~~vv~assGN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 95 (278)
|+..|||.+++.-|.++|....+.|.++++.-.... -+...+.++..|.+++.+.-+ .+.++..+..++..++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 347899999999999999999999999777654321 123456778888887654321 24455555566666664
|