Citrus Sinensis ID: 023698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Secondary Structure (PSIPRED)
cccEEccccEEEEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHccEEEEEEcccEEEccccEEEccEEEEEEEccHHHHHHccccHHHHHHHHHHcccEEcccccccccccccEEcccccccccHHHHHHHcHHHHcccccccHHHHccccccccccccHHHHHcccccHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEEcccccEEEEccccccEEEccccccEHHHccccHEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHcccHHHHccccEEEcccccccccEEEEEcHccccccccccccccHHHHHHHccccEEEEcccccccEEcEEEEccccccccHHHHHHEccHcccccccccHHHcccccccccccccHHHHHHccccccccccccccccccHHHHHHHccccccc
Coil and Loop (DISEMBL)
maqitsqgglnllfngdgssfgveprdpfqyklgsglrsievhkrklirprngvwssmnkkksskfSVDASlnvsgkgisgeseeydsdeefDELACFRGLVldisyrpvnvVCWKRAICLEFMEKADVLEYYdqtinspngsfyiPAVLRVRHLLQVVKRRRIKnnlsrknlmyrdnftcqycssrenltidhvvpasrggewkWENLVAACFKCNSRKGKKTLEEANMQLsrvpkapkdydilaIPLTSAAIRMLRVRkgtpvewrqylpqhslel
Flexible Loop (DISEMBL)
maqitsqgglnLLFNGDGSSFGVEPRDPFQYKLgsglrsievhkrklirprngvwssmnkkksskfsvdaslnvsgkgisgeseeydsDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLqvvkrrriknnlsrknlmyrdNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQlsrvpkapkdydILAIPLTSAAIRMLRVRKGTpvewrqylpqhslel
Low Complexity Region (SEG)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWssmnkkksskfsVDASLNVSGKGIsgeseeydsdeefdeLACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Disordered region (IsUnstruct)
***********LLFN*************FQYKLGSGLRSIEVHKRKLI**********************************************LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS*********************KDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL*******
Disordered Region (DISOPRED)
********GLNLLFNGDGSSFGVEPRDPFQYKLGSGLRS*********************************************************CFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE*
Disordered Region (DISEMBL)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSS************ASLNVSG***************FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Disordered Region (DISPRO)
*AQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVW**************************************ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
255568954	275	endonuclease, putative [Ricinus communis	0.964	0.974	0.681	1e-103
225441641	277	PREDICTED: uncharacterized protein LOC10	0.974	0.978	0.686	1e-103
449446780	277	PREDICTED: uncharacterized protein LOC10	0.960	0.963	0.667	1e-101
224123804	272	predicted protein [Populus trichocarpa]	0.956	0.977	0.684	1e-100
297739746	187	unnamed protein product [Vitis vinifera]	0.669	0.994	0.854	5e-92
356571688	288	PREDICTED: uncharacterized protein LOC10	0.956	0.923	0.610	1e-90
224145957	194	predicted protein [Populus trichocarpa]	0.690	0.989	0.815	2e-89
356560967	282	PREDICTED: uncharacterized protein LOC10	0.960	0.946	0.621	5e-89
297853378	283	HNH endonuclease domain-containing prote	0.974	0.957	0.603	8e-89
30682222	284	HNH endonuclease [Arabidopsis thaliana]	0.974	0.954	0.604	6e-88

>gi|255568954|ref|XP_002525447.1| endonuclease, putative [Ricinus communis] gi|223535260|gb|EEF36937.1| endonuclease, putative [Ricinus communis]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/283 (68%), Positives = 221/283 (78%), Gaps = 15/283 (5%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGL----RSIEVHKRKL--IRPRNGV 54
           MAQ T+QG L LLFN DG    +         LG+G      S  V K K   I     +
Sbjct: 1   MAQFTAQGRLKLLFNSDGIQCKL---------LGNGFVGGCTSFRVQKGKFRYIGSSTRL 51

Query: 55  WSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +S   KKS  F+ +ASLN   +   GESE+YDS+ E D+LACFRGLVLDISYRPVNVVC
Sbjct: 52  HASSVSKKSRHFNAEASLNAEEENDIGESEDYDSEYETDDLACFRGLVLDISYRPVNVVC 111

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
           WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++
Sbjct: 112 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNVL 171

Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
           +RDN+TCQYCSSRENLTIDHV+P +RGG+W WENLV AC KCNS+KG+KT EEANM+L +
Sbjct: 172 HRDNYTCQYCSSRENLTIDHVLPTARGGQWTWENLVTACSKCNSKKGQKTPEEANMKLIK 231

Query: 235 VPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 277
           VPKAPK+YDILAIPLTSAAIRMLR+RKG P EWRQYL + S E
Sbjct: 232 VPKAPKEYDILAIPLTSAAIRMLRMRKGMPEEWRQYLARPSSE 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441641|ref|XP_002282210.1| PREDICTED: uncharacterized protein LOC100264031 [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/281 (68%), Positives = 217/281 (77%), Gaps = 10/281 (3%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ-YKLGSGL-RSIEVHKRKL-IRPRNGVWSS 57
           MAQ T+QG       G     GVEP+DP+  YK G G      +H  KL       ++SS
Sbjct: 2   MAQFTAQG------QGRLKPLGVEPKDPYHCYKFGGGCWPRFRIHSPKLGFLDSTKLYSS 55

Query: 58  MNKKKSSKFSVDASLNVSGKGISGES-EEYDSDEEFDELACFRGLVLDISYRPVNVVCWK 116
               KS+ F   A LNV  KGI  +     D + E DELACFRGLVLD+SYRPVNVVCW+
Sbjct: 56  SLNTKSNHFRAQARLNVGDKGIYDDDVHAGDGEFEMDELACFRGLVLDLSYRPVNVVCWR 115

Query: 117 RAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYR 176
           RAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKNNLSRKN+ YR
Sbjct: 116 RAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNNLSRKNIFYR 175

Query: 177 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVP 236
           DNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV AC KCNS+KG+KTLEEANM+LS+VP
Sbjct: 176 DNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVTACAKCNSKKGQKTLEEANMKLSKVP 235

Query: 237 KAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 277
           KAPKDYDILAIPLT+ AIRMLR+RKGTP EWRQYL + S E
Sbjct: 236 KAPKDYDILAIPLTNTAIRMLRMRKGTPEEWRQYLSKPSAE 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446780|ref|XP_004141149.1| PREDICTED: uncharacterized protein LOC101207660 [Cucumis sativus]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/277 (66%), Positives = 221/277 (79%), Gaps = 10/277 (3%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+   L LL NGDG  FG E +D F+YKL    RS+   +  L RP +   SS + 
Sbjct: 1   MAQFTAHTRLKLLLNGDGLPFGSESKDRFRYKL----RSVRPRRFPLSRPSSSTTSSTSA 56

Query: 61  -KKSSKFSVDASLNVSGKGISGESEE-----YDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +K ++ + +  + V  + ++G  ++     YD + E D+LACFRGLVLDISYRPVNVVC
Sbjct: 57  LRKPTQHAAEVRVGVRDESVNGGDDDVVGFDYDYELESDDLACFRGLVLDISYRPVNVVC 116

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
           WKRAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLRV HLLQVVKRRRIKN+LSRKN++
Sbjct: 117 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNSLSRKNIL 176

Query: 175 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 234
           YRDN+TCQYCSS E+LTIDHV+P SRGGEW WENLVAAC KCNS+KG+KT+EEANM+L +
Sbjct: 177 YRDNYTCQYCSSHESLTIDHVLPISRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKK 236

Query: 235 VPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
            PKAPKDYDILAIPLTS AI+ML++RKGTP EWRQYL
Sbjct: 237 TPKAPKDYDILAIPLTSTAIKMLKLRKGTPEEWRQYL 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123804|ref|XP_002319168.1| predicted protein [Populus trichocarpa] gi|222857544|gb|EEE95091.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/282 (68%), Positives = 222/282 (78%), Gaps = 16/282 (5%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKL-----IRPRNGVW 55
           MAQ T+ G L   FN DG+S+ +   D        GLRS +  KRK+        R    
Sbjct: 1   MAQFTAHGRLKFPFNNDGASWKLLGND-----FVGGLRSFQNQKRKIRFLGTSGTRLYAA 55

Query: 56  SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCW 115
           SS++KK    F  +AS +VS   ++ +SEE   D E DELACFRGLVLDISYRPVNVVCW
Sbjct: 56  SSLSKK-PKHFYTEASQSVSE--VNDDSEE---DYERDELACFRGLVLDISYRPVNVVCW 109

Query: 116 KRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMY 175
           +RAICLEFMEKADVLEYYDQ +NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++Y
Sbjct: 110 RRAICLEFMEKADVLEYYDQAVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNILY 169

Query: 176 RDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRV 235
           RDN+TCQYCSSRENLTIDHV+P +RGGEWKWENLVAAC KCNS+KG+KT EEANM+LS+V
Sbjct: 170 RDNYTCQYCSSRENLTIDHVLPTARGGEWKWENLVAACAKCNSKKGQKTPEEANMKLSKV 229

Query: 236 PKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 277
           PKAPKDYDILAIPLTSAAIRMLR+RKG P EW+QYL + S E
Sbjct: 230 PKAPKDYDILAIPLTSAAIRMLRMRKGMPEEWQQYLARPSSE 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739746|emb|CBI29928.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/186 (85%), Positives = 174/186 (93%)

Query: 92  FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLR 151
            DELACFRGLVLD+SYRPVNVVCW+RAICLEFMEKADVLEYYDQT+NSP+GSFYIPAVLR
Sbjct: 1   MDELACFRGLVLDLSYRPVNVVCWRRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLR 60

Query: 152 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA 211
           V HLLQVVKRRRIKNNLSRKN+ YRDNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV 
Sbjct: 61  VPHLLQVVKRRRIKNNLSRKNIFYRDNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVT 120

Query: 212 ACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
           AC KCNS+KG+KTLEEANM+LS+VPKAPKDYDILAIPLT+ AIRMLR+RKGTP EWRQYL
Sbjct: 121 ACAKCNSKKGQKTLEEANMKLSKVPKAPKDYDILAIPLTNTAIRMLRMRKGTPEEWRQYL 180

Query: 272 PQHSLE 277
            + S E
Sbjct: 181 SKPSAE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571688|ref|XP_003554006.1| PREDICTED: uncharacterized protein LOC100787021 isoform 1 [Glycine max] gi|356571690|ref|XP_003554007.1| PREDICTED: uncharacterized protein LOC100787021 isoform 2 [Glycine max]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 177/290 (61%), Positives = 205/290 (70%), Gaps = 24/290 (8%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+QG L LL NG+G S  +E +DPF YK     RS++ HKR+  R           
Sbjct: 1   MAQFTTQGRLKLLLNGEGVSSVLEHKDPFLYKC----RSVQTHKRR-TRYAGSSARIYYA 55

Query: 61  KKSSKFSVDASLNVSGKGISGESEEYDSDE-------------------EFDELACFRGL 101
             SS  S     N   +  SG    +D  +                   + D L+CFRGL
Sbjct: 56  STSSLSSKSHRCNAEARHTSGNGSVHDEYDDIDDDEDEDDEEEEEEDVFDRDGLSCFRGL 115

Query: 102 VLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKR 161
           VLDI+YRPVNVV WKRAICLEFMEKADVLEYY +T+NSP+GSFYIPAVLRV HLLQVVKR
Sbjct: 116 VLDIAYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPHLLQVVKR 175

Query: 162 RRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
           R IKNNLSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCN +KG
Sbjct: 176 RIIKNNLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACAKCNCKKG 235

Query: 222 KKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
           +KTLEEA M+L + PK PKDYDILAIPLT+AA+RML +RKGTP EWRQYL
Sbjct: 236 RKTLEEAKMKLIKPPKVPKDYDILAIPLTAAALRMLTIRKGTPEEWRQYL 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145957|ref|XP_002325827.1| predicted protein [Populus trichocarpa] gi|222862702|gb|EEF00209.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/195 (81%), Positives = 179/195 (91%), Gaps = 3/195 (1%)

Query: 84  EEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGS 143
           E+YDS  E DELACFRGLVLDISYRPVNVVCWKRA+CLEFMEKADVLEYYDQ +NSP+GS
Sbjct: 2   EDYDS--ERDELACFRGLVLDISYRPVNVVCWKRAMCLEFMEKADVLEYYDQAVNSPSGS 59

Query: 144 FYIPAVLRVRHLLQVVKRRRI-KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG 202
           FYIPAVLRV HLLQVVKRRRI ++ LSRKN+++RDN+TCQYCSSRENLTIDHV+P ++GG
Sbjct: 60  FYIPAVLRVPHLLQVVKRRRIFRSKLSRKNILHRDNYTCQYCSSRENLTIDHVLPTAQGG 119

Query: 203 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 262
           EW+WENLV AC KCNS+KGKKT EEANM+LS+VPKAPKDYDILAIPLTSAAIRMLR+RKG
Sbjct: 120 EWQWENLVTACAKCNSKKGKKTPEEANMKLSKVPKAPKDYDILAIPLTSAAIRMLRIRKG 179

Query: 263 TPVEWRQYLPQHSLE 277
            P EW+QYL + S E
Sbjct: 180 MPEEWQQYLARPSSE 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560967|ref|XP_003548757.1| PREDICTED: uncharacterized protein LOC100810482 [Glycine max]

 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 176/283 (62%), Positives = 209/283 (73%), Gaps = 16/283 (5%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEP-RDPFQYKLGSGLRSIEVHKRKLIR-----PRNGV 54
           MAQ T+QG L LLFNG+G S  +E  +DPF Y   +  RS++ HKR+  R      R   
Sbjct: 1   MAQFTTQGRLKLLFNGEGVSSVLEHNKDPFLY---NKCRSVQTHKRRTTRCIGSSARIYY 57

Query: 55  WSSMNKKKSSKFSVDASLNVSGKG------ISGESEEYDSDEEFDELACFRGLVLDISYR 108
            SS    K+   + +A L  SG G           ++ D   + D L+CFRGLVLDI+YR
Sbjct: 58  VSSSLSNKTHLCNAEAWL-TSGNGSVHDEYDDDVEDDDDDVFDRDGLSCFRGLVLDIAYR 116

Query: 109 PVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNL 168
           PVNVV WKRAICLEFMEKADVLEYY +T+NSP+GSFYIPAVLRV  LLQVVKRR +KNNL
Sbjct: 117 PVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPQLLQVVKRRIVKNNL 176

Query: 169 SRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA 228
           SRKN+++RDN+TCQYCSS ENLTIDHV+P + GGEW WENLV AC KCN +KG+KTLEEA
Sbjct: 177 SRKNILFRDNYTCQYCSSHENLTIDHVMPTALGGEWTWENLVTACAKCNCKKGRKTLEEA 236

Query: 229 NMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
            M+L + PK PKDYDILAIPLT+AA+RML +RKGTP EWRQYL
Sbjct: 237 KMKLIKPPKVPKDYDILAIPLTAAALRMLTLRKGTPEEWRQYL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853378|ref|XP_002894570.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340412|gb|EFH70829.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 169/280 (60%), Positives = 210/280 (75%), Gaps = 9/280 (3%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ---YKLGSGLRSIEVHKRKL---IRPRNGV 54
           MA  +S+  L LL + DG SFGV+ RD F+   Y  G G   + + + +L    R  +  
Sbjct: 1   MAHFSSR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGTPLVSIRRSRLKFCARIFSSY 58

Query: 55  WSSMNKKKSSKF-SVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVV 113
                +KK   F + + +L +       + +  D   E D+L+CFRGLVLDISYRPVNVV
Sbjct: 59  SFPYKRKKIRDFDNTEKNLGIDEDNDDWDFDGDDDVLETDDLSCFRGLVLDISYRPVNVV 118

Query: 114 CWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNL 173
           CWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN+
Sbjct: 119 CWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKNI 178

Query: 174 MYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 233
           + RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNS+KG+KT EEA+M+L 
Sbjct: 179 LLRDDYTCQYCSSRENLTIDHVMPVSRGGEWSWQNLVAACSRCNSKKGQKTAEEAHMKLL 238

Query: 234 RVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 273
           +VPK PKDYDI+AIPLT+AAIRMLR  KG P EWR+YL +
Sbjct: 239 KVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRRYLAK 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682222|ref|NP_179964.2| HNH endonuclease [Arabidopsis thaliana] gi|38603958|gb|AAR24724.1| At2g23840 [Arabidopsis thaliana] gi|44681452|gb|AAS47666.1| At2g23840 [Arabidopsis thaliana] gi|330252404|gb|AEC07498.1| HNH endonuclease [Arabidopsis thaliana]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 170/281 (60%), Positives = 211/281 (75%), Gaps = 10/281 (3%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKL-----GSGLRSIEVHKRKLIRPRNGVW 55
           MA  +++  L LL + DG SFGV+ RD F+  L     GS L  I + + K        +
Sbjct: 1   MAHFSAR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGSPLVPIRMSRLKFCARIFSSY 58

Query: 56  SSMNKKKSSKF--SVDASLNVSGKGISGESEEYDSDEEFDE-LACFRGLVLDISYRPVNV 112
           S   K+K  +   + + +L++       + +  D   E D+ L+CFRGLVLDISYRPVNV
Sbjct: 59  SFPYKRKKIRDLDNTEKNLDIDEDNDEWDFDGDDDGLETDDHLSCFRGLVLDISYRPVNV 118

Query: 113 VCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKN 172
           VCWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN
Sbjct: 119 VCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKN 178

Query: 173 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 232
           ++ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNSRKG+KT +EA+M+L
Sbjct: 179 ILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACSRCNSRKGQKTADEAHMKL 238

Query: 233 SRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 273
            +VPK PKDYDI+AIPLT+AAIRMLR  KG P EWRQYL +
Sbjct: 239 LKVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRQYLAK 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2061476	284	AT2G23840 [Arabidopsis thalian	0.636	0.623	0.807	4.5e-84
TIGR_CMR|SPO_2123	194	SPO_2123 "HNH endonuclease fam	0.474	0.680	0.411	4e-26
UNIPROTKB|O53196	222	Rv2469c "Uncharacterized prote	0.571	0.716	0.369	3.8e-23
UNIPROTKB|Q0BWS6	197	HNE_3394 "HNH endonuclease dom	0.489	0.690	0.35	3.8e-23
UNIPROTKB|Q3Z918	177	DET0537 "HNH endonuclease doma	0.571	0.898	0.366	4.8e-23
TIGR_CMR|DET_0537	177	DET_0537 "HNH endonuclease dom	0.571	0.898	0.366	4.8e-23
UNIPROTKB|Q604E9	196	MCA2596 "HNH endonuclease doma	0.258	0.367	0.426	8.3e-12
UNIPROTKB|Q74BH1	101	GSU2070 "HNH endonuclease fami	0.230	0.633	0.371	3.1e-08
TIGR_CMR|GSU_2070	101	GSU_2070 "HNH endonuclease fam	0.230	0.633	0.371	3.1e-08

TAIR|locus:2061476 AT2G23840 [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 143/177 (80%), Positives = 164/177 (92%)

Query:    95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRH 154
             L+CFRGLVLDISYRPVNVVCWKRAICLE+M+KADVLEYYDQT++SP GSFYIPAVLRV H
Sbjct:   101 LSCFRGLVLDISYRPVNVVCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPH 160

Query:   155 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 214
             LLQVVKRRR+KN+LSRKN++ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC 
Sbjct:   161 LLQVVKRRRVKNSLSRKNILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACS 220

Query:   215 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
             +CNSRKG+KT +EA+M+L +VPK PKDYDI+AIPLT+AAIRMLR  KG P EWRQYL
Sbjct:   221 RCNSRKGQKTADEAHMKLLKVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRQYL 277

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TIGR_CMR|SPO_2123 SPO_2123 "HNH endonuclease family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 56/136 (41%), Positives = 85/136 (62%)

Query:   105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
             +SY P+++  W+ AI   ++++ D++  YD+ + SP+    IP+V+ ++  ++  KR   
Sbjct:    31 LSYYPLSLWPWQEAIKAAWLDRVDIIAEYDEVVRSPSVVLRIPSVVVLKDYVKPQKRVAF 90

Query:   165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
                 +R NL  RD F CQYC  + +LT DHVVP + GG   WEN+VAAC  CN RKG K+
Sbjct:    91 ----TRFNLFLRDEFRCQYCGGKGDLTFDHVVPRAAGGVTSWENVVAACAPCNLRKGSKS 146

Query:   225 LEEANMQLSRVPKAPK 240
             L +ANM L R P+ P+
Sbjct:   147 LRQANMSLRRPPRRPQ 162

GO:0003824 "catalytic activity" evidence=ISS

GO:0006259 "DNA metabolic process" evidence=ISS

UNIPROTKB|O53196 Rv2469c "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 65/176 (36%), Positives = 94/176 (53%)

Query:    99 RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQT---INSPNGSFYIPAVLRVRHL 155
             R L+L+ +Y P+  +  +RAI +    KADV+ + D +   I+S   S  +P+V+++R  
Sbjct:    56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVV-HEDPSGPVIHSATRSILVPSVIQLRSY 114

Query:   156 LQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFK 215
             ++V  R R+   ++R  LM+RD F C YC  + + T+DHVVP SRGG   WEN VA C  
Sbjct:   115 VRVPYRARVP--MTRAALMHRDRFCCAYCGGKAD-TVDHVVPRSRGGAHSWENCVACCSP 171

Query:   216 CNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
             CN RKG + L E    L R P          +P T    R+L   K     W +YL
Sbjct:   172 CNHRKGDRLLTELGWALRRAP----------LPPTGPHWRLLSAVKELDPSWARYL 217

GO:0005576 "extracellular region" evidence=IDA

UNIPROTKB|Q0BWS6 HNE_3394 "HNH endonuclease domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/140 (35%), Positives = 79/140 (56%)

Query:   105 ISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRI 164
             +SY P+++  W+  I   F+++ D++  YD  + SP+    +P+V+ +R     V++ R 
Sbjct:    34 LSYYPLSLWPWQEVIKAVFLDRVDIIAEYDYVVRSPSREMRLPSVIALRDF---VRQDRA 90

Query:   165 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
                 +R N+  RD F C YC + +NLT DHV+P S+GG   WEN+V AC  CN  KG K 
Sbjct:    91 PA-FTRFNVFLRDGFKCAYCGAHDNLTFDHVIPRSKGGRTTWENIVTACSPCNLAKGGKL 149

Query:   225 LEEANMQLSRVPKAPKDYDI 244
             L  + + L   P  P ++ +
Sbjct:   150 LRASGLDLQHRPFRPNNFQL 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z918 DET0537 "HNH endonuclease domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 63/172 (36%), Positives = 95/172 (55%)

Query:   101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
             LVL+  Y+P+NV   +RA+ L +  KA++LE      +S    F +P+V+R+  L   +K
Sbjct:     7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63

Query:   161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
                ++  L+R  +  RD  TCQYC  ++  LTIDHV P  +GG   WEN+V AC  CN  
Sbjct:    64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123

Query:   220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
             K  +T E+A+M+L   P  P+     ++P ++ +IR          EWR YL
Sbjct:   124 KAGRTPEQAHMKLLSTPGVPQYRYGYSLPRSNGSIRH---------EWRPYL 166

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0537 DET_0537 "HNH endonuclease domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 63/172 (36%), Positives = 95/172 (55%)

Query:   101 LVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVK 160
             LVL+  Y+P+NV   +RA+ L +  KA++LE      +S    F +P+V+R+  L   +K
Sbjct:     7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63

Query:   161 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 219
                ++  L+R  +  RD  TCQYC  ++  LTIDHV P  +GG   WEN+V AC  CN  
Sbjct:    64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123

Query:   220 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 271
             K  +T E+A+M+L   P  P+     ++P ++ +IR          EWR YL
Sbjct:   124 KAGRTPEQAHMKLLSTPGVPQYRYGYSLPRSNGSIRH---------EWRPYL 166

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q604E9 MCA2596 "HNH endonuclease domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 160 (61.4 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 32/75 (42%), Positives = 41/75 (54%)

Query:   168 LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
             L+   L  RD   C YC +      L+ DH+ P SRGG   W N+V AC +CN+ K  +T
Sbjct:    86 LNNAALFRRDGHICLYCGNLFRHSELSRDHIQPTSRGGSDTWNNVVTACKRCNNHKAGRT 145

Query:   225 LEEANMQLSRVPKAP 239
              EEA MQL  +P  P
Sbjct:   146 PEEAKMQLLAIPFTP 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74BH1 GSU2070 "HNH endonuclease family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:   157 QVVKRRRIKNNLSRKNLMYR---DNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 210
             Q ++R + K    R++  ++      TC +C      E LT+DHVVP  RGG+    N+V
Sbjct:    11 QEIRREKDKARELRRSRWWQTVISRRTCHWCGGDFPPEELTMDHVVPIVRGGKSSRGNVV 70

Query:   211 AACFKCNSRK 220
              AC +CN+RK
Sbjct:    71 PACKECNNRK 80

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2070 GSU_2070 "HNH endonuclease family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:   157 QVVKRRRIKNNLSRKNLMYR---DNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 210
             Q ++R + K    R++  ++      TC +C      E LT+DHVVP  RGG+    N+V
Sbjct:    11 QEIRREKDKARELRRSRWWQTVISRRTCHWCGGDFPPEELTMDHVVPIVRGGKSSRGNVV 70

Query:   211 AACFKCNSRK 220
              AC +CN+RK
Sbjct:    71 PACKECNNRK 80

GO:0004519 "endonuclease activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025489001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (276 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022843001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)	•								0.506
	GSVIVG00023128001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (370 aa)							•		0.468

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
COG1403	146	COG1403, McrA, Restriction endonuclease [Defense m	2e-19
pfam01844	47	pfam01844, HNH, HNH endonuclease	2e-11
cd00085	57	cd00085, HNHc, HNH nucleases; HNH endonuclease sig	1e-10
smart00507	52	smart00507, HNHc, HNH nucleases	5e-09
pfam13395	54	pfam13395, HNH_4, HNH endonuclease	6e-04

>gnl|CDD|224321 COG1403, McrA, Restriction endonuclease [Defense mechanisms]

 Score = 81.9 bits (202), Expect = 2e-19
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 115 WKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 174
            + A+     ++A  +  Y   + S +     P+V  +    +    +R      R+ ++
Sbjct: 9   IRPALDRLVSQRAKHVAEYPC-LASESKDLRRPSVTDLTGESKRPSEKRPAKT--RRAVL 65

Query: 175 YRDNFTCQYCSS-RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 233
            RDN  CQYC S   +L +DH+VP SRGG   WENL   C +C+++KG +   +A M+L 
Sbjct: 66  LRDNGLCQYCGSVGTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLR 125

Query: 234 RVPKAPK 240
             P+ P+
Sbjct: 126 VKPRKPE 132

Length = 146

>gnl|CDD|216737 pfam01844, HNH, HNH endonuclease

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 181 CQYC----SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223
           CQYC       + L +DH++P S+GG     NLV  C  C+ RK  +
Sbjct: 1   CQYCGRPFKDTDALEVDHIIPRSKGGADDLSNLVLLCRSCHRRKHAR 47

Length = 47

>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 170 RKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 221
           R  L+ RD   C YC      E L +DH++P S GG    +NLV  C KC+ +K 
Sbjct: 4   RLVLLARD-GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH 57

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. Length = 57

>gnl|CDD|214702 smart00507, HNHc, HNH nucleases

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 170 RKNLMYRDNFTCQYCSSREN--LTIDHVVPASRGGEWKWENLVAACFKCNS 218
           R+ L++RD   C YC    +  L +DH++P S GG    +NLV  C KC+ 
Sbjct: 3   RRLLLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI 52

Length = 52

>gnl|CDD|222099 pfam13395, HNH_4, HNH endonuclease

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 8/52 (15%)

Query: 181 CQYCS--------SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 224
           C Y                IDH++P SR  +    N V    + N  K  +T
Sbjct: 1   CPYTGKPISIDDLFSNKYDIDHIIPQSRSFDDSLWNKVLVLREANREKSNRT 52

This HNH nuclease domain is found in CRISPR-related proteins. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
COG1403	146	McrA Restriction endonuclease [Defense mechanisms]	99.76
PF13395	54	HNH_4: HNH endonuclease	99.37
cd00085	57	HNHc HNH nucleases; HNH endonuclease signature whi	99.32
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	99.25
smart00507	52	HNHc HNH nucleases.	99.25
PF01844	47	HNH: HNH endonuclease; InterPro: IPR002711 HNH end	99.16
TIGR02646	144	conserved hypothetical protein TIGR02646. Members	99.01
PRK11295	113	hypothetical protein; Provisional	98.92
PF14279	71	HNH_5: HNH endonuclease	97.27
COG3513	1088	Predicted CRISPR-associated nuclease, contains Mcr	96.43
PHA02565	157	49 recombination endonuclease VII; Provisional	95.78
smart00782	47	PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein fami	95.29
COG3183	272	Predicted restriction endonuclease [Defense mechan	95.27
PF13391	66	HNH_2: HNH endonuclease	94.08
COG3440	301	Predicted restriction endonuclease [Defense mechan	93.84
PF05766	189	NinG: Bacteriophage Lambda NinG protein; InterPro:	93.81
TIGR02986	424	restrict_Alw26I type II restriction endonuclease,	92.16
PF06147	200	DUF968: Protein of unknown function (DUF968); Inte	91.7
TIGR03031	802	cas_csx12 CRISPR-associated protein, Csx12 family.	91.24
PF09665	511	RE_Alw26IDE: Type II restriction endonuclease (RE_	85.37
PF05315	230	ICEA: ICEA Protein; InterPro: IPR007979 This famil	82.74

>COG1403 McrA Restriction endonuclease [Defense mechanisms]

Probab=99.76  E-value=1.3e-18  Score=140.54  Aligned_cols=133  Identities=29%  Similarity=0.538  Sum_probs=117.8

Q ss_pred             cceeeeeeHHHHHHHHHcCceeEEeecCCeeecCCcceecceEEEEeccchhhhhcccCCHHHHHHHHHHCCCccccCCC
Q 023698          107 YRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS  186 (278)
Q Consensus       107 y~Pl~~vs~qrAv~l~~~gkAevl~~~~~~v~S~s~~~~vPsVIrL~~yv~~p~r~~~~~~~~R~~Vl~RD~~~C~YCG~  186 (278)
                      |.|....+|++++..+..++|..+..+. -+++.+....+|.+..+..+...+...  .+..+|..++.+|++.|+||+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~d~~~c~~c~~   77 (146)
T COG1403           1 YNPLESKSIRPALDRLVSQRAKHVAEYP-CLASESKDLRRPSVTDLTGESKRPSEK--RPAKTRRAVLLRDNGLCQYCGS   77 (146)
T ss_pred             CccccccchhHHHHHHhhcccccccCcc-eecceecccccCccceeeeeecccCCC--CchHHHHHHHccccccccccCC
Confidence            5688899999999999999999887654 455677788899999999887766543  4678999999999999999998


Q ss_pred             CC-CCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHHHhcccccCCCCCCcc
Q 023698          187 RE-NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDY  242 (278)
Q Consensus       187 ~~-~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpeeagm~Ll~~P~~P~~~  242 (278)
                      .. .+++|||+|++.||.+.|+||+++|..||.+|+++.+.+++|.....|..|...
T Consensus        78 ~~~~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~~~~~~~~~~~~~~~~~~~~~  134 (146)
T COG1403          78 VGTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLRVKPRKPEVE  134 (146)
T ss_pred             cCCCCceeeEeecccCCcchHHHHHHHHHhhcccccccchhhccCcccccccCCchh
Confidence            73 799999999999999999999999999999999999999999999999998753

>PF13395 HNH_4: HNH endonuclease

Probab=99.37  E-value=1.5e-13  Score=98.99  Aligned_cols=45  Identities=49%  Similarity=0.949  Sum_probs=42.1

Q ss_pred             cccCCCC---C-----CCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCH
Q 023698          181 CQYCSSR---E-----NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL  225 (278)
Q Consensus       181 C~YCG~~---~-----~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtp  225 (278)
                      |.|||++   .     ..++|||+|+|.++.+++.|||++|+.||+.|++++|
T Consensus         1 C~Y~g~~i~~~~l~~~~~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~P   53 (54)
T PF13395_consen    1 CPYCGKPISIENLFKNKYEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKTP   53 (54)
T ss_pred             CCCCCCCCChhhcccCCceeEEEecccccCCCCcchhheECHHHhhcccccCC
Confidence            9999987   2     3799999999999999999999999999999999986

>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

Probab=99.32  E-value=1.5e-12  Score=90.08  Aligned_cols=53  Identities=42%  Similarity=0.769  Sum_probs=48.1

Q ss_pred             HHHHHHHHHCCCccccCCCC---CCCccceeeecCCCCCCchhhHHHhchhhhcCcC
Q 023698          168 LSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG  221 (278)
Q Consensus       168 ~~R~~Vl~RD~~~C~YCG~~---~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg  221 (278)
                      ..|..+++++ ++|+||+..   ..+++|||+|.+.||.++++||+++|..||..|+
T Consensus         2 ~~r~~~~~~~-~~C~~c~~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~~~   57 (57)
T cd00085           2 SHRLVLLARD-GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH   57 (57)
T ss_pred             hHHHHHHHhC-CcCccCCCcCCCCCceEEeecchhhCCCCchHHhHHHHHHHhhccC
Confidence            3678889998 899999984   6799999999999999999999999999999874

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=99.25  E-value=5e-12  Score=132.43  Aligned_cols=61  Identities=31%  Similarity=0.418  Sum_probs=56.4

Q ss_pred             HHHHHHHHHCCCccccCCCC---C------CCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHHH
Q 023698          168 LSRKNLMYRDNFTCQYCSSR---E------NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  228 (278)
Q Consensus       168 ~~R~~Vl~RD~~~C~YCG~~---~------~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpeea  228 (278)
                      ..|..++.+++++|+|||.+   .      .+++|||+|+|+||.|+|+|+|++|..||+.|++++|.+|
T Consensus       571 ~~k~~L~~~q~~~C~Y~g~~i~~~~l~~~~~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~e~  640 (805)
T TIGR01865       571 ILKLRLYYQQNGKCMYTGKEIDIDDLFDLSYYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPYEA  640 (805)
T ss_pred             HHHHHHHHHcCCcCCCCCCcCccccccCCCCCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHHHH
Confidence            45778999999999999987   2      4789999999999999999999999999999999999996

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>smart00507 HNHc HNH nucleases

Probab=99.25  E-value=2.9e-12  Score=87.02  Aligned_cols=49  Identities=41%  Similarity=0.788  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCccccCCCCC--CCccceeeecCCCCCCchhhHHHhchhhhc
Q 023698          169 SRKNLMYRDNFTCQYCSSRE--NLTIDHVVPASRGGEWKWENLVAACFKCNS  218 (278)
Q Consensus       169 ~R~~Vl~RD~~~C~YCG~~~--~ltvDHIiP~S~GG~~tweNLv~aC~~CN~  218 (278)
                      .|..++.|| +.|++||.+.  .+++|||+|.+.||.++++||+++|..||.
T Consensus         2 ~~~~~~~r~-~~C~~C~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~   52 (52)
T smart00507        2 LRRLLLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI   52 (52)
T ss_pred             HHHHHHHHC-CCCcCCcCCCCCCeEEEecCChhcCCCCChHhCeecChhhCc
Confidence            467899999 9999999884  489999999999999999999999999995

>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]

Probab=99.16  E-value=1.3e-12  Score=89.45  Aligned_cols=43  Identities=42%  Similarity=0.930  Sum_probs=31.6

Q ss_pred             cccCCCC----CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCC
Q 023698          181 CQYCSSR----ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK  223 (278)
Q Consensus       181 C~YCG~~----~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~r  223 (278)
                      |++||..    ..+++|||+|++.||.++++||+++|..||+.|+++
T Consensus         1 C~~C~~~~~~~~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~~k   47 (47)
T PF01844_consen    1 CQYCGKPGSDNESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKHDK   47 (47)
T ss_dssp             -TTT--B--GG-GEEEEESS-TTTT---STTTEEEEEHHHHHHHH--
T ss_pred             CCCCCCcCccCcceEeECcCchhcCCCCCHHHHHHHhHHHHHHhcCC
Confidence            8999987    468999999999999999999999999999999764

This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.

>TIGR02646 conserved hypothetical protein TIGR02646

Probab=99.01  E-value=3.5e-10  Score=95.75  Aligned_cols=77  Identities=21%  Similarity=0.367  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHCCCccccCCCC---CCCccceeeecCCCCC--CchhhHHHhchh---------hhcCcCCCCHHHHhccc
Q 023698          167 NLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE--WKWENLVAACFK---------CNSRKGKKTLEEANMQL  232 (278)
Q Consensus       167 ~~~R~~Vl~RD~~~C~YCG~~---~~ltvDHIiP~S~GG~--~tweNLv~aC~~---------CN~~Kg~rtpeeagm~L  232 (278)
                      ..+|..++..++++|+||+..   ..++||||+|++..+.  .+|+||+++|..         ||..|++..... ...+
T Consensus        13 ~~i~~~L~~~~~~~C~YC~~~~~~~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~~~n~~~~~~~Cn~~K~~~~~~~-~~~~   91 (144)
T TIGR02646        13 DEVHNQLLQLQGGLCAYCEREIELLGSHIEHFRPKGAYPPLTLDWSNLFGSCHRESKQGNPLHCGRFKDNSCGSN-NFDE   91 (144)
T ss_pred             HHHHHHHHHHhCCCcCccCCCcCCCCcceeeecccCCChhhhcChhhchhhccccCCCCCccccccccccccccc-cccc
Confidence            468999999999999999984   6689999999998875  589999999999         888886554322 2345


Q ss_pred             ccCCCCCCcccc
Q 023698          233 SRVPKAPKDYDI  244 (278)
Q Consensus       233 l~~P~~P~~~~~  244 (278)
                      +..|..+...+.
T Consensus        92 ~i~P~~~~~~~~  103 (144)
T TIGR02646        92 LIDPLADDCEQL  103 (144)
T ss_pred             ccCCCCCChHHh
Confidence            666887764333

Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.

>PRK11295 hypothetical protein; Provisional

Probab=98.92  E-value=5.7e-10  Score=92.28  Aligned_cols=61  Identities=20%  Similarity=0.312  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHCCCccccCCCC------CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHH
Q 023698          167 NLSRKNLMYRDNFTCQYCSSR------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE  227 (278)
Q Consensus       167 ~~~R~~Vl~RD~~~C~YCG~~------~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpee  227 (278)
                      ...|+.++.++.+.|+.|++.      ..++||||+|...|+.++-+||+++|..||++|+.+....
T Consensus        13 ~~~R~~~L~r~p~lC~~Cgr~~~~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh~R~~~~   79 (113)
T PRK11295         13 SGYREKALKLYPWVCGRCSREFVYSNLRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEHSKYTEA   79 (113)
T ss_pred             HHHHHHHHHHCcchhhhhcChhccCCCCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHHhhHHHh
Confidence            468999999999999999985      3579999999998988889999999999999998666543

>PF14279 HNH_5: HNH endonuclease

Probab=97.27  E-value=0.00011  Score=56.20  Aligned_cols=44  Identities=41%  Similarity=0.854  Sum_probs=36.2

Q ss_pred             cccCCCC---CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHH
Q 023698          181 CQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE  227 (278)
Q Consensus       181 C~YCG~~---~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpee  227 (278)
                      |.||++.   ...+.+||+|-|-||...+.|   .|..||+.-+...-.+
T Consensus         1 Ci~C~~~~~~~~~s~EHIIP~sLGG~~~~~~---vC~~CN~~~g~~vD~~   47 (71)
T PF14279_consen    1 CIYCNKEKSESNFSEEHIIPESLGGKLKINN---VCDKCNNKFGSKVDAE   47 (71)
T ss_pred             CccCCCCCCccCCCccccCchhcCCcccccc---hhHHHhHHHhHHHHHH
Confidence            8999987   345689999999999888877   8999999887555433

>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]

Probab=96.43  E-value=0.0013  Score=69.88  Aligned_cols=60  Identities=32%  Similarity=0.406  Sum_probs=53.7

Q ss_pred             HHHHHHHHCCCccccCCCC------CC---CccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHHH
Q 023698          169 SRKNLMYRDNFTCQYCSSR------EN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  228 (278)
Q Consensus       169 ~R~~Vl~RD~~~C~YCG~~------~~---ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpeea  228 (278)
                      .+-.++.-++++|.|.|+.      .+   .++|||+|.|+-..|+.+|.|+.-..=|+-|+|.+|-|+
T Consensus       562 lKLrLY~~Q~gkcmYsgqei~I~rL~dk~~~eIDHi~P~Sr~~DDS~~NkVLv~s~~Nq~KgnqtP~e~  630 (1088)
T COG3513         562 LKLRLYYLQNGKCMYSGQEIDIHRLSDKGYYEIDHIVPQSRTWDDSIDNKVLVLSSENQEKGNQTPYEE  630 (1088)
T ss_pred             hHHHHHHHhcCcccccCcccchhhcccccceeeceeccccccccccccceeEEeccccccccCCCCHHH
Confidence            4457888899999999986      33   899999999999999999999999999999999998774

>PHA02565 49 recombination endonuclease VII; Provisional

Probab=95.78  E-value=0.0068  Score=53.09  Aligned_cols=55  Identities=18%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCCchhh-HHHhchhhhcCcCCCC
Q 023698          167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWEN-LVAACFKCNSRKGKKT  224 (278)
Q Consensus       167 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltvDHIiP~S~GG~~tweN-Lv~aC~~CN~~Kg~rt  224 (278)
                      +..++.+++.++++|+.|+.+     ..+.+||..|.+....   .+ --++|..||...|...
T Consensus         9 ~~~k~~l~e~Q~G~CaiC~~~l~~~~~~~~vDHDH~l~g~~T---G~VRGLLC~~CN~~lG~~~   69 (157)
T PHA02565          9 KEEKQKLFEAQNGICPLCKRELDGDVSKNHLDHDHELNGPNA---GRVRGLLCNLCNALEGQMK   69 (157)
T ss_pred             HHHHHHHHHHhCCcCCCCCCccCCCccccccCCCCCCCCccc---ccccccCchhhhhhhhhhh
Confidence            467889999999999999976     3478999988763221   23 4579999999887653

>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon

Probab=95.29  E-value=0.011  Score=42.20  Aligned_cols=44  Identities=32%  Similarity=0.528  Sum_probs=35.4

Q ss_pred             HHHHCCCccccCCCCCCCccceeeecCCCCCCchhhHHHhchhhhcC
Q 023698          173 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR  219 (278)
Q Consensus       173 Vl~RD~~~C~YCG~~~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~  219 (278)
                      ++.|.+..|..||....|.+-+|-|.+.   ..-+|-+.+|..|+..
T Consensus         2 L~~Rs~~kCELC~a~~~L~vy~Vpp~~~---~~~d~~iliC~tC~~Q   45 (47)
T smart00782        2 LLARCESKCELCGSDSPLVVYAVPPSSD---VTADNSVMLCDTCHSQ   45 (47)
T ss_pred             hhHHcCCcccCcCCCCCceEEecCCCCC---CCccceeeechHHHHh
Confidence            6789999999999888899888766544   3456679999999864

This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.

>COG3183 Predicted restriction endonuclease [Defense mechanisms]

Probab=95.27  E-value=0.011  Score=55.66  Aligned_cols=58  Identities=16%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHCCCccccCCCC----------CCCccceeeecCCCC----CCchhhHHHhchhhhcCcCCC
Q 023698          166 NNLSRKNLMYRDNFTCQYCSSR----------ENLTIDHVVPASRGG----EWKWENLVAACFKCNSRKGKK  223 (278)
Q Consensus       166 ~~~~R~~Vl~RD~~~C~YCG~~----------~~ltvDHIiP~S~GG----~~tweNLv~aC~~CN~~Kg~r  223 (278)
                      .+..|++.+.-.+..|..|+..          .-.+|||++|.+.-+    .+...-|+++|+.||..-+-+
T Consensus       183 na~~ra~~Ia~~G~vC~vC~fdF~k~YGe~gKgyIeVHH~~piae~e~~~~vnp~tDL~plCpNCH~mvHrr  254 (272)
T COG3183         183 NATLRAAAIAIHGTVCDVCEFDFQKKYGEIGKGYIEVHHKIPIAEFEGEYHVNPLTDLAPLCPNCHKMVHRR  254 (272)
T ss_pred             ChHHHHHHHHHhCceeeecCccHHHHhhhhccCeEEEeeccchhhhcCccccCchhhhhhcCccHHHHHhcc
Confidence            4568888888888999999965          358999999998532    378899999999999865443

>PF13391 HNH_2: HNH endonuclease

Probab=94.08  E-value=0.01  Score=42.80  Aligned_cols=39  Identities=23%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             cccCCCCC-----CCccceeeecCCC--CCC-----------chhhHHHhchhhhcC
Q 023698          181 CQYCSSRE-----NLTIDHVVPASRG--GEW-----------KWENLVAACFKCNSR  219 (278)
Q Consensus       181 C~YCG~~~-----~ltvDHIiP~S~G--G~~-----------tweNLv~aC~~CN~~  219 (278)
                      |..||...     .+++-||+|.+.+  +.+           +.+|..++|..+|..
T Consensus         1 C~itg~~~~~~~~~~eaaHI~P~s~~~~~~~~~~~~~~~~~~~~~Ngl~L~~~lH~~   57 (66)
T PF13391_consen    1 CVITGIRDPSPWELLEAAHIVPFSLGSWWMNNWFGEYANDWISPSNGLLLRPDLHKL   57 (66)
T ss_pred             CcCCcCCcCCCCCcEEEEEcccCccCCCchhhhhhhhhccCCCccEEEEcCHhHHHH
Confidence            78888665     6899999999987  445           778999999999864

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=93.84  E-value=0.026  Score=53.95  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHCCCccccCCCC-------CCCccceeeecCCCCCCchhhHHHhchhhhcC
Q 023698          166 NNLSRKNLMYRDNFTCQYCSSR-------ENLTIDHVVPASRGGEWKWENLVAACFKCNSR  219 (278)
Q Consensus       166 ~~~~R~~Vl~RD~~~C~YCG~~-------~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~  219 (278)
                      ....|+.|+.--+|+|+.||..       ..+..-||.|.+++|.+...|-.++|+..|..
T Consensus       180 d~~fRk~V~~~Y~~RCalCG~e~~~~~~q~ii~~ahikp~~q~y~~~i~N~LaLC~nHh~~  240 (301)
T COG3440         180 DGAFRKIVLRQYDYRCALCGLEVLDFLEQNIIKAAHIKPFQQFYPDRIINGLALCKNHHWA  240 (301)
T ss_pred             hHHHHHHHHHHhcchhhhhcchhhhhhHHHHhhhhhcCcccccCcccccccchhchhhHHH
Confidence            4579999999999999999943       34667799999999999999999999877763

>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap)

Probab=93.81  E-value=0.085  Score=47.56  Aligned_cols=57  Identities=19%  Similarity=0.351  Sum_probs=43.9

Q ss_pred             HHHHHHHHHC-CCccccCCCC--CCCccceeeecCCCC--CCchhhHHHhchhhhcCcCCCC
Q 023698          168 LSRKNLMYRD-NFTCQYCSSR--ENLTIDHVVPASRGG--EWKWENLVAACFKCNSRKGKKT  224 (278)
Q Consensus       168 ~~R~~Vl~RD-~~~C~YCG~~--~~ltvDHIiP~S~GG--~~tweNLv~aC~~CN~~Kg~rt  224 (278)
                      ...+.|..|| +..|..||..  ..++.-|...+..-.  ..+.+|+-..|..||..+++-.
T Consensus        76 afn~~IR~RD~~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn~  137 (189)
T PF05766_consen   76 AFNKYIRLRDAGKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGNI  137 (189)
T ss_pred             HHHHHHHHHhcCCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccccccccCH
Confidence            4556777886 6799999987  568889997553222  3578999999999999997654

These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].

>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family

Probab=92.16  E-value=0.066  Score=53.09  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=41.6

Q ss_pred             CccccCCCC-CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHHHhcccc
Q 023698          179 FTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS  233 (278)
Q Consensus       179 ~~C~YCG~~-~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpeeagm~Ll  233 (278)
                      ..|+.|+.. ..+..|||-|.|-|=.+.. +++++|..||+.|.+|.--..-..|+
T Consensus       245 ~~~~~~~~~p~~~saDHIGPISlGF~h~P-~Fqplc~~cNSaKnnR~~lsDV~~Li  299 (424)
T TIGR02986       245 CSIPECCKHPEKISADHIGPISLGFVHDP-RFQPLCSSCNSAKNDRLTLSDVKTLI  299 (424)
T ss_pred             ccCcccccCCCCCCccccCCcccccccCc-cccccccccccccccceeHHHHHHHH
Confidence            456778875 7799999999999876655 45999999999999997544333333

Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.

>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans

Probab=91.70  E-value=0.096  Score=47.21  Aligned_cols=51  Identities=14%  Similarity=0.271  Sum_probs=37.8

Q ss_pred             CCCccccCCCCCCCccceeeecCCCC---CCchhhHHHhchhhhcCcCCCCHHHHh
Q 023698          177 DNFTCQYCSSRENLTIDHVVPASRGG---EWKWENLVAACFKCNSRKGKKTLEEAN  229 (278)
Q Consensus       177 D~~~C~YCG~~~~ltvDHIiP~S~GG---~~tweNLv~aC~~CN~~Kg~rtpeeag  229 (278)
                      -.-.|..||++. -+++|++..-.||   ...-..++++|+.||+..++ -.+.+.
T Consensus       126 ~~~~C~iCGk~~-~d~hH~iG~g~~~~~~~~~d~~~ipLCr~hH~e~H~-g~~~Fe  179 (200)
T PF06147_consen  126 KSRPCVICGKPP-ADIHHIIGMGRGRMGIKHHDLFVIPLCREHHRELHR-GRKAFE  179 (200)
T ss_pred             ccCccccCCCCc-cccceeeccccCccccccCCCeehhccHHHHHHHhC-CHHHHH
Confidence            345899999763 4899997665454   34567899999999998877 555554

>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family

Probab=91.24  E-value=0.1  Score=54.48  Aligned_cols=39  Identities=23%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             HHHHHCCCccccCCCC--CCCccceeeecCCCCC------CchhhHH
Q 023698          172 NLMYRDNFTCQYCSSR--ENLTIDHVVPASRGGE------WKWENLV  210 (278)
Q Consensus       172 ~Vl~RD~~~C~YCG~~--~~ltvDHIiP~S~GG~------~tweNLv  210 (278)
                      .|..-..+-|+|||..  ..-++|||+|+|.-+.      |+..||.
T Consensus       754 RIk~fs~gIcpY~Ga~iG~~gEiDHI~PRSht~k~ygtvFN~E~NLI  800 (802)
T TIGR03031       754 RIKNFSMGICPYKGASIGGQGEIDHIYPRSHSKKHYGTIFNSEVNLI  800 (802)
T ss_pred             HHHHHhccCCCCCCCCCCCcccccccccccccccccceeecCcccee
Confidence            4455567899999987  5679999999998654      4555654

Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.

>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=85.37  E-value=0.29  Score=49.70  Aligned_cols=55  Identities=27%  Similarity=0.446  Sum_probs=40.0

Q ss_pred             Ccccc--CCCC-CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHHHHhccccc
Q 023698          179 FTCQY--CSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR  234 (278)
Q Consensus       179 ~~C~Y--CG~~-~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpeeagm~Ll~  234 (278)
                      +.|+.  |++. .-+..|||-|.|-|=.+... ++++|..||+.|.+|.--..-..|+.
T Consensus       243 G~~~~~~~~~~~~~~SaDHIGPISlGF~h~P~-Fqplc~~cNSaKnnR~~lsDV~~Li~  300 (511)
T PF09665_consen  243 GLCRFPNCGKEEECLSADHIGPISLGFVHRPR-FQPLCKSCNSAKNNRMYLSDVKKLIN  300 (511)
T ss_pred             CcccCCchhhhccccCccccCCcccccccCcc-ccccccccccccccceeHHHHHHHHH
Confidence            45543  5554 55799999999998766654 49999999999999975444434443

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).

>PF05315 ICEA: ICEA Protein; InterPro: IPR007979 This family consists of several ICEA proteins from Helicobacter pylori, infection of which causes gastritis and peptic ulcer disease, and the bacteria is classified as a definite carcinogen of gastric cancer

Probab=82.74  E-value=0.38  Score=44.25  Aligned_cols=69  Identities=19%  Similarity=0.367  Sum_probs=44.6

Q ss_pred             EEEEeccchhhhhcccCCHHHHHHHHHHCC-CccccCCCC-----CCCccceeeecCCCC------CCchhhHHHhchhh
Q 023698          149 VLRVRHLLQVVKRRRIKNNLSRKNLMYRDN-FTCQYCSSR-----ENLTIDHVVPASRGG------EWKWENLVAACFKC  216 (278)
Q Consensus       149 VIrL~~yv~~p~r~~~~~~~~R~~Vl~RD~-~~C~YCG~~-----~~ltvDHIiP~S~GG------~~tweNLv~aC~~C  216 (278)
                      .|||..|  .+..  +....+|+.|..-.. -.|.+||..     ..+++||-.-+...-      ..+.+-++++|..|
T Consensus        71 ~IRLnG~--n~~~--~fnq~Ir~dIk~~yk~q~Cvm~g~~g~sent~ieiDHKd~rk~d~rvsd~~~q~~~dFQ~Lck~~  146 (230)
T PF05315_consen   71 RIRLNGF--NTEK--VFNQNIRQDIKNYYKQQCCVMCGVRGNSENTKIEIDHKDGRKDDLRVSDMNTQTFDDFQPLCKAC  146 (230)
T ss_pred             HHHHcCc--Cchh--hhhhHHHHHHHHHHHhcCeeeecccCCCccceeeecccccccccchhcccchhhHHHHHHHHHHH
Confidence            5677766  2222  234567776654432 479999974     568899974333221      12568899999999


Q ss_pred             hcCcC
Q 023698          217 NSRKG  221 (278)
Q Consensus       217 N~~Kg  221 (278)
                      |..|.
T Consensus       147 N~~KR  151 (230)
T PF05315_consen  147 NDQKR  151 (230)
T ss_pred             hHHHH
Confidence            99884

ICEA1 is speculated to be associated with peptic ulcer disease and may have endonuclease activity [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	278
4h9d_A	112	Crystal Structure Of Mn-Dependent Gme Hnh Nicking E		3e-05

>pdb|4H9D|A Chain A, Crystal Structure Of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target Gmr87 Length = 112

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 157 QVVKRRRIKNNLSRKNLMYRDNFT---CQYCSS---RENLTIDHVVPASRGGEWKWENLV 210
           Q VKR + K    R++  +++      C YC      E LT DH+VP  RGG+    N+V
Sbjct: 11  QEVKREKEKARELRRSQWWKNRIARGICHYCGEIFPPEELTXDHLVPVVRGGKSTRGNVV 70
Query: 211 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDIL 245
            AC +CN+RK      E    L  +   P D + L
Sbjct: 71  PACKECNNRKKYLLPVEWEEYLDSLESEPSDGEGL 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	2e-37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	99.5
3m7k_A	142	Restriction endonuclease PACI; HNH restriction end	94.98
1e7l_A	157	GP49, recombination endonuclease VII; resolvase, h	94.87

>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*

Probab=94.98  E-value=0.0039  Score=52.25  Aligned_cols=48  Identities=27%  Similarity=0.432  Sum_probs=34.2

Q ss_pred             HCCCccccCCCC-----------------CCCccceeeecCCCCCCchhhHHHhchhhhcCcCCCCHH
Q 023698          176 RDNFTCQYCSSR-----------------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE  226 (278)
Q Consensus       176 RD~~~C~YCG~~-----------------~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg~rtpe  226 (278)
                      ++.-.|-|||..                 .-|+||-.  .+.- .-+.+||+.||..||+.|++..-.
T Consensus        58 ~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR~--~~~~-~Ys~dNLaLAC~~CNnaKsdk~ta  122 (142)
T 3m7k_A           58 SAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRS--DSFE-GYSPQNARLACFICNRIKSNIFSA  122 (142)
T ss_dssp             GGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEES--STTS-CBCTTTEEEECHHHHHHHTTTSCH
T ss_pred             CCCCceeeecccHHHHHHHhhccCCCccccceEEecc--CCcc-ccCHHHHHHHHHHHhccccccccc
Confidence            566799999975                 11555542  2222 246899999999999999998744

>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*

Probab=94.87  E-value=0.0083  Score=51.39  Aligned_cols=53  Identities=17%  Similarity=0.364  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCCchhhHH-HhchhhhcCcCC
Q 023698          167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLV-AACFKCNSRKGK  222 (278)
Q Consensus       167 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltvDHIiP~S~GG~~tweNLv-~aC~~CN~~Kg~  222 (278)
                      +..+..+++.++++|+.|+.+     ..+.+||--+..  |..+ .++. ++|..||...|.
T Consensus         9 ~~~~~~l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~t-G~VRGlLC~~CN~~lG~   67 (157)
T 1e7l_A            9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELN--GPKA-GKVRGLLCNLCDAAEGQ   67 (157)
T ss_dssp             HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS--STTT-TBEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcCcccCCccccccccccccCCCCCC--CCCC-CcchhhccHhHhchhcc
Confidence            357889999999999999986     457899988665  2222 3555 799999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1e7la2	103	Recombination endonuclease VII, N-terminal domain	84.27

>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: Recombination endonuclease VII, N-terminal domain
domain: Recombination endonuclease VII, N-terminal domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.27  E-value=0.28  Score=37.19  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCCchhhHHHhchhhhcCcC
Q 023698          167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG  221 (278)
Q Consensus       167 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltvDHIiP~S~GG~~tweNLv~aC~~CN~~Kg  221 (278)
                      +..++++++.++++|+.|+.+     ..+.+||=.-.-..+....  =-.+|..||..-|
T Consensus         9 ~ee~~~l~~~Q~g~C~IC~~~~~~~~~~~~vDHdH~~~~~~TG~V--RGlLC~~CN~~lG   66 (103)
T d1e7la2           9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELNGPKAGKV--RGLLCNLCDAAEG   66 (103)
T ss_dssp             HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCSSTTTTBE--EEEECHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcCCCCCCCcccccccceeeccccccCCCCCce--eeecchHHhHhhc
Confidence            467788999999999999976     3467888642211111111  2368999998665