Citrus Sinensis ID: 023706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
cccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccEEEEcccccHHHHHHHHHccccccccccEEEEcccEEEEcccccHHHHHHHccccHHHHHHcccccEEEEEEccccccccccEEEEEEEEEEEcccccccccccccc
ccccccccccccEEEEEccccccEEEccccccccccccEEEEcccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccEEEEEEEEEcccccccccccEEEEEcccccHHHHHHHHHHccccccccccEEccccEEEEcccHHHHHHHcHHHcccHHHHHccccEEEEEEEEEEccccccEEEEEEEEEEEEcccccccccccccc
mvdggtegfkgharviipgvtpcfectiwlfppqvkfplctlaetprtaAHCIEYAHLikwdevhsgksfdpddpehMQWVYSEAVKRAelfgipgvtysltQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTefvkdkdclvcgpgvlieldTSVTLEKFINLLEEHPKLQLAKASVTyrgknlymqappvleemtrsnlslplYDLMDKVAKDILHVtgvtgqsdkktscLRKLRVVFRgvdgvtdmdmagga
mvdggtegfkgharvIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLleehpklqlaKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVtgvtgqsdkktsclrklrvvfrgvdgvtdmdmagga
MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKniipaiastnaiisaaCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
********FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG*********HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGV*********
MVDGGTEGFKGHARVIIPGVTPCFEC**********FPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDM***G**
MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTG*********SCLRKLRVVFRGVDGVTDMDMAGGA
****GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVD***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query278 2.2.26 [Sep-21-2011]
O65041454 NEDD8-activating enzyme E yes no 1.0 0.612 0.759 1e-124
Q54QG9442 NEDD8-activating enzyme E yes no 0.823 0.518 0.481 7e-58
Q99MI7462 NEDD8-activating enzyme E yes no 0.830 0.5 0.468 8e-58
Q8C878462 NEDD8-activating enzyme E yes no 0.830 0.5 0.464 1e-57
Q9V6U8450 NEDD8-activating enzyme E yes no 0.830 0.513 0.491 1e-57
Q5R4A0463 NEDD8-activating enzyme E yes no 0.830 0.498 0.460 2e-57
Q8TBC4463 NEDD8-activating enzyme E yes no 0.830 0.498 0.464 2e-57
Q7ZVX6462 NEDD8-activating enzyme E yes no 0.830 0.5 0.456 3e-57
Q19360430 NEDD8-activating enzyme E yes no 0.834 0.539 0.459 8e-54
Q09765444 NEDD8-activating enzyme E yes no 0.820 0.513 0.389 6e-46
>sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2 Back     alignment and function desciption
 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/279 (75%), Positives = 238/279 (85%), Gaps = 1/279 (0%)

Query: 1   MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
           MVDGGTEGFKGHARVI+PGVTPCFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+
Sbjct: 176 MVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQ 235

Query: 61  WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAII 120
           W+ VH GK+FDPD+PEHM+WVY EA++RAELFGIPGVTYSLTQGVVKNIIPAIASTNAII
Sbjct: 236 WETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAII 295

Query: 121 SAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVT 180
           SAACALETLKI S CSKTL NYLTYNG  GL+ +VT+F +D +CLVCGPG+LIELDTSVT
Sbjct: 296 SAACALETLKIVSACSKTLVNYLTYNGGEGLYTEVTKFERDTECLVCGPGILIELDTSVT 355

Query: 181 LEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDIL 240
           L KFI +LE+HPKL L+KASV      LYMQAPPVLEE  R  LS PLYDLM +V KD +
Sbjct: 356 LSKFIEMLEDHPKLLLSKASVKQGENTLYMQAPPVLEEFHRPKLSKPLYDLMGRVQKDTI 415

Query: 241 HVTGVTG-QSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA 278
           HV G    ++++K SC  K+RVVF+G DGV DMD A GA
Sbjct: 416 HVFGQRALKNNEKESCTTKVRVVFKGADGVADMDTAIGA 454
Catalytic subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q54QG9|UBA3_DICDI NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=1 SV=1 Back     alignment and function description
>sp|Q99MI7|UBA3_RAT NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1 Back     alignment and function description
>sp|Q8C878|UBA3_MOUSE NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=1 SV=2 Back     alignment and function description
>sp|Q9V6U8|UBA3_DROME NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=2 SV=1 Back     alignment and function description
>sp|Q5R4A0|UBA3_PONAB NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2 Back     alignment and function description
>sp|Q8TBC4|UBA3_HUMAN NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2 Back     alignment and function description
>sp|Q7ZVX6|UBA3_DANRE NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1 Back     alignment and function description
>sp|Q19360|UBA3_CAEEL NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2 Back     alignment and function description
>sp|Q09765|UBA3_SCHPO NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
255552279 449 ubiquitin-activating enzyme E1c, putativ 1.0 0.619 0.892 1e-148
449432724 449 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.619 0.888 1e-147
225432556 449 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.619 0.877 1e-145
224100343 449 predicted protein [Populus trichocarpa] 1.0 0.619 0.870 1e-143
224110476 449 predicted protein [Populus trichocarpa] 1.0 0.619 0.863 1e-141
357480207 454 NEDD8-activating enzyme E1 catalytic sub 1.0 0.612 0.841 1e-141
356521961 446 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.623 0.830 1e-139
356563478 446 PREDICTED: NEDD8-activating enzyme E1 ca 1.0 0.623 0.816 1e-137
194703956 455 unknown [Zea mays] gi|238005742|gb|ACR33 0.982 0.6 0.765 1e-125
226491402 455 LOC100283559 [Zea mays] gi|195635569|gb| 0.982 0.6 0.765 1e-125
>gi|255552279|ref|XP_002517184.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] gi|223543819|gb|EEF45347.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/278 (89%), Positives = 269/278 (96%)

Query: 1   MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
           MVDGGTEGFKGHARVI+PG+TPCFECTIWLFPPQVKFPLCTLAETPRT AHCIEYAHLIK
Sbjct: 172 MVDGGTEGFKGHARVIMPGITPCFECTIWLFPPQVKFPLCTLAETPRTPAHCIEYAHLIK 231

Query: 61  WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAII 120
           W+EVHSGK+FDPDDPEHM+WVY+EAVKRAELFGI GVTYSLTQGVVKNIIPAIASTNAII
Sbjct: 232 WNEVHSGKAFDPDDPEHMKWVYTEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAII 291

Query: 121 SAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVT 180
           SAACALETLKIASGCSKTLSNYLTYNGV GLHIKVTEFVKDKDCL CGPGVLIELDTSV 
Sbjct: 292 SAACALETLKIASGCSKTLSNYLTYNGVEGLHIKVTEFVKDKDCLACGPGVLIELDTSVA 351

Query: 181 LEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDIL 240
           L+KFI+LLEEHPKL L++ASVT+RGKNLYMQAPPVLEEMTRSNLSLPL++LM KV KDI+
Sbjct: 352 LQKFIDLLEEHPKLFLSRASVTHRGKNLYMQAPPVLEEMTRSNLSLPLFELMGKVPKDIV 411

Query: 241 HVTGVTGQSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA 278
           HVTG+TGQ+ KKTSC+RKLRVVF+G++G+TDMDMAGGA
Sbjct: 412 HVTGMTGQNGKKTSCVRKLRVVFKGMEGITDMDMAGGA 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449432724|ref|XP_004134149.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] gi|449515377|ref|XP_004164726.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432556|ref|XP_002280928.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Vitis vinifera] gi|297736997|emb|CBI26198.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100343|ref|XP_002311839.1| predicted protein [Populus trichocarpa] gi|222851659|gb|EEE89206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110476|ref|XP_002315531.1| predicted protein [Populus trichocarpa] gi|222864571|gb|EEF01702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357480207|ref|XP_003610389.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] gi|355511444|gb|AES92586.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356521961|ref|XP_003529618.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|356563478|ref|XP_003549989.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max] Back     alignment and taxonomy information
>gi|194703956|gb|ACF86062.1| unknown [Zea mays] gi|238005742|gb|ACR33906.1| unknown [Zea mays] gi|413946904|gb|AFW79553.1| NEDD8-activating enzyme E1 catalytic subunit [Zea mays] Back     alignment and taxonomy information
>gi|226491402|ref|NP_001149931.1| LOC100283559 [Zea mays] gi|195635569|gb|ACG37253.1| NEDD8-activating enzyme E1 catalytic subunit [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
TAIR|locus:2182172454 ECR1 "E1 C-terminal related 1" 0.996 0.610 0.707 1.4e-105
FB|FBgn0263697450 Uba3 "Ubiquitin activating enz 0.830 0.513 0.454 6.5e-51
UNIPROTKB|E1BT61463 UBA3 "Uncharacterized protein" 0.830 0.498 0.435 1.5e-49
UNIPROTKB|F1P4G8351 F1P4G8 "Uncharacterized protei 0.830 0.658 0.435 1.5e-49
RGD|621084462 Uba3 "ubiquitin-like modifier 0.830 0.5 0.422 6e-48
UNIPROTKB|Q99MI7462 Uba3 "NEDD8-activating enzyme 0.830 0.5 0.422 6e-48
MGI|MGI:1341217462 Uba3 "ubiquitin-like modifier 0.830 0.5 0.418 7.7e-48
UNIPROTKB|Q0P5I7463 UBA3 "Ubiquitin-like modifier 0.830 0.498 0.418 1.2e-47
UNIPROTKB|B7Z5F6286 UBA3 "cDNA FLJ58044, highly si 0.830 0.807 0.418 1.2e-47
UNIPROTKB|F8W8D4422 UBA3 "NEDD8-activating enzyme 0.830 0.547 0.418 1.2e-47
TAIR|locus:2182172 ECR1 "E1 C-terminal related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 198/280 (70%), Positives = 226/280 (80%)

Query:     1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
             MVDGGTEGFKGHARVI+PGVTPCFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+
Sbjct:   176 MVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQ 235

Query:    61 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXX 120
             W+ VH GK+FDPD+PEHM+WVY EA++RAELFGIPGVTYSLTQGVVK             
Sbjct:   236 WETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAII 295

Query:   121 XXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTSVT 180
                CALETLKI S CSKTL NYLTYNG  GL+ +VT+F +D +CLVCGPG+LIELDTSVT
Sbjct:   296 SAACALETLKIVSACSKTLVNYLTYNGGEGLYTEVTKFERDTECLVCGPGILIELDTSVT 355

Query:   181 LEKFINLLEEHPKLQLAKASVTYRGKN-LYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDI 239
             L KFI +LE+HPKL L+KASV  +G+N LYMQAPPVLEE  R  LS PLYDLM +V KD 
Sbjct:   356 LSKFIEMLEDHPKLLLSKASVK-QGENTLYMQAPPVLEEFHRPKLSKPLYDLMGRVQKDT 414

Query:   240 LHVTGVTG-QSDKKTSCLRKLRVVFRGVDGVTDMDMAGGA 278
             +HV G    ++++K SC  K+RVVF+G DGV DMD A GA
Sbjct:   415 IHVFGQRALKNNEKESCTTKVRVVFKGADGVADMDTAIGA 454
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0008641 "small protein activating enzyme activity" evidence=IEA;IDA
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0045116 "protein neddylation" evidence=IEA;TAS
GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA
GO:0046982 "protein heterodimerization activity" evidence=NAS
FB|FBgn0263697 Uba3 "Ubiquitin activating enzyme 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT61 UBA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4G8 F1P4G8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621084 Uba3 "ubiquitin-like modifier activating enzyme 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99MI7 Uba3 "NEDD8-activating enzyme E1 catalytic subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1341217 Uba3 "ubiquitin-like modifier activating enzyme 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5I7 UBA3 "Ubiquitin-like modifier activating enzyme 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z5F6 UBA3 "cDNA FLJ58044, highly similar to NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W8D4 UBA3 "NEDD8-activating enzyme E1 catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65041UBA3_ARATH6, ., 3, ., 2, ., -0.75981.00.6123yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019920001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (450 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025874001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (523 aa)
   •• • 0.970
GSVIVG00036331001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (329 aa)
   •• • 0.596
GSVIVG00024224001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (98 aa)
   •  • 0.537
GSVIVG00023341001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (433 aa)
   •    0.491
GSVIVG00010470001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (386 aa)
   •    0.457
GSVIVG00033164001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (188 aa)
   •    0.442
GSVIVG00014641001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (397 aa)
   •    0.441
GSVIVG00014791001
SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)
   •  • 0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
cd01488291 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1 1e-109
cd01484234 cd01484, E1-2_like, Ubiquitin activating enzyme (E 2e-46
pfam0213466 pfam02134, UBACT, Repeat in ubiquitin-activating ( 2e-29
cd01489312 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E 3e-27
pfam0882585 pfam08825, E2_bind, E2 binding domain 2e-26
cd01490435 cd01490, Ube1_repeat2, Ubiquitin activating enzyme 6e-12
pfam1058544 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e 3e-10
TIGR01408 1008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 2e-05
TIGR014081008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 9e-05
pfam0523777 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain 0.001
>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information 
 Score =  318 bits (816), Expect = e-109
 Identities = 104/168 (61%), Positives = 127/168 (75%)

Query: 1   MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
           ++DGGTEGFKGHARVI+PG+T C EC++ LFPPQV FPLCT+A TPR   HCIEYA LI+
Sbjct: 124 LIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQ 183

Query: 61  WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAII 120
           W +       D DDPEH++W+Y +A++RA  F I GVTYSLTQGVVK IIPA+ASTNAII
Sbjct: 184 WPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAII 243

Query: 121 SAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCG 168
           +AAC LE LKIA+ C + L+NYL YNGV G +    E  + +DC VC 
Sbjct: 244 AAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHERKEDCPVCS 291

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein Back     alignment and domain information
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>gnl|CDD|192164 pfam08825, E2_bind, E2 binding domain Back     alignment and domain information
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|113988 pfam05237, MoeZ_MoeB, MoeZ/MoeB domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 278
KOG2015422 consensus NEDD8-activating complex, catalytic comp 100.0
KOG2013603 consensus SMT3/SUMO-activating complex, catalytic 100.0
TIGR014081008 Ube1 ubiquitin-activating enzyme E1. This model re 100.0
cd01490435 Ube1_repeat2 Ubiquitin activating enzyme (E1), rep 100.0
cd01488291 Uba3_RUB Ubiquitin activating enzyme (E1) subunit 100.0
KOG20121013 consensus Ubiquitin activating enzyme UBA1 [Posttr 100.0
cd01489312 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit 100.0
cd01484234 E1-2_like Ubiquitin activating enzyme (E1), repeat 100.0
PF0213467 UBACT: Repeat in ubiquitin-activating (UBA) protei 99.89
PF1058545 UBA_e1_thiolCys: Ubiquitin-activating enzyme activ 99.66
PF0882584 E2_bind: E2 binding domain; InterPro: IPR014929 E1 99.66
PRK08762376 molybdopterin biosynthesis protein MoeB; Validated 99.42
PRK07411390 hypothetical protein; Validated 99.38
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 99.37
PF0523784 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T 99.35
PRK05597355 molybdopterin biosynthesis protein MoeB; Validated 99.31
TIGR02355240 moeB molybdopterin synthase sulfurylase MoeB. This 99.3
PRK05600370 thiamine biosynthesis protein ThiF; Validated 99.29
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 99.28
TIGR03603318 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy 99.28
PRK05690245 molybdopterin biosynthesis protein MoeB; Provision 99.2
PRK07878392 molybdopterin biosynthesis-like protein MoeZ; Vali 99.16
KOG2017427 consensus Molybdopterin synthase sulfurylase [Coen 99.14
PF09358125 UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina 99.13
PF1473287 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti 99.07
PRK08328231 hypothetical protein; Provisional 98.98
PRK08223287 hypothetical protein; Validated 98.87
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 98.81
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 98.78
COG0476254 ThiF Dinucleotide-utilizing enzymes involved in mo 98.73
KOG2336422 consensus Molybdopterin biosynthesis-related prote 98.03
cd01491286 Ube1_repeat1 Ubiquitin activating enzyme (E1), rep 97.92
TIGR014081008 Ube1 ubiquitin-activating enzyme E1. This model re 97.28
TIGR03736244 PRTRC_ThiF PRTRC system ThiF family protein. A nov 96.81
PRK14852 989 hypothetical protein; Provisional 96.37
PRK08644212 thiamine biosynthesis protein ThiF; Provisional 96.26
TIGR01381664 E1_like_apg7 E1-like protein-activating enzyme Gsa 96.23
KOG2014331 consensus SMT3/SUMO-activating complex, AOS1/RAD31 95.97
TIGR03693 637 ocin_ThiF_like putative thiazole-containing bacter 95.9
KOG20121013 consensus Ubiquitin activating enzyme UBA1 [Posttr 95.68
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 94.77
cd01492197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 94.69
cd01490435 Ube1_repeat2 Ubiquitin activating enzyme (E1), rep 94.68
PRK14851 679 hypothetical protein; Provisional 93.34
cd01493425 APPBP1_RUB Ubiquitin activating enzyme (E1) subuni 91.93
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 86.58
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 84.77
TIGR02354200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 83.72
KOG2016523 consensus NEDD8-activating complex, APP-BP1/UBA5 c 81.74
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-57  Score=407.55  Aligned_cols=252  Identities=46%  Similarity=0.786  Sum_probs=240.1

Q ss_pred             CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccCCC-CccCCCChHHHH
Q 023706            1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDPDDPEHMQ   79 (278)
Q Consensus         1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~~~-~~FdkDd~~hi~   79 (278)
                      ||||||+|||||+++|+|+.|+|++|+.+++|++.++|+|||.|+|+.|||||+|++.+.|+++++. ..+|.||+.||+
T Consensus       167 lIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~  246 (422)
T KOG2015|consen  167 LIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIE  246 (422)
T ss_pred             eeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999987 789999999999


Q ss_pred             HHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeeecc
Q 023706           80 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFV  159 (278)
Q Consensus        80 fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  159 (278)
                      ||+..++.||..|+|.++++..+.|++.+||||+|||||+||+.+++|++|+++....+++|||+|++..|.+.+++.++
T Consensus       247 wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~e  326 (422)
T KOG2015|consen  247 WIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLE  326 (422)
T ss_pred             HHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeeec
Confidence            99999999999999999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             cCCCCccCCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEEeC-CcEEEeeCCCchhhhhccccCCcHHHhhccccc
Q 023706          160 KDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAK  237 (278)
Q Consensus       160 ~~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~~g-~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~~~~  237 (278)
                      +.++|++|+. ...+++.+..||+++++++.+.|  +|+.|.++.- ...||+++++.+++++|+||.++|.+| .+|  
T Consensus       327 r~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~--~lk~p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~l-~dg--  401 (422)
T KOG2015|consen  327 RDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSF--QLKSPALTTAAGRTLYLSSVPSIEEATRKNLSQSLKEL-SDG--  401 (422)
T ss_pred             cCCCCccccCCCcccccCCcccHHHHHHHhhhhh--ccCCchhhhhhcceEeecCCcHHHHHhhhhhhhhHHHh-cCC--
Confidence            9999999998 77788888899999999999887  8999998754 378999998999999999999999999 888  


Q ss_pred             ceeeeccccccccCCcceEEEEEEEE
Q 023706          238 DILHVTGVTGQSDKKTSCLRKLRVVF  263 (278)
Q Consensus       238 ~~~~~~~~~~v~d~~~~~~~~l~~~~  263 (278)
                      ++|      +|+|...+..+.|++++
T Consensus       402 ~~l------~vtd~~~~~~l~~~l~~  421 (422)
T KOG2015|consen  402 QEL------VVTDKTLSTALTLQLRE  421 (422)
T ss_pred             ceE------EEecccCCcceeEEEec
Confidence            899      99999999999999987

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised Back     alignment and domain information
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism] Back     alignment and domain information
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p Back     alignment and domain information
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein Back     alignment and domain information
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
3gzn_B463 Structure Of Nedd8-Activating Enzyme In Complex Wit 2e-50
2nvu_B805 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 2e-50
1tt5_B434 Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I 2e-50
1yov_B444 Insights Into The Ubiquitin Transfer Cascade From T 3e-50
1r4m_B431 Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com 2e-49
3dbl_B434 Structural Dissection Of A Gating Mechanism Prevent 2e-49
3dbr_B434 Structural Dissection Of A Gating Mechanism Prevent 9e-49
3dbh_B434 Structural Dissection Of A Gating Mechanism Prevent 2e-48
3kyc_B 660 Human Sumo E1 Complex With A Sumo1-Amp Mimic Length 2e-07
3kyd_B 551 Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi 2e-07
1y8q_B 640 Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex 1e-06
3cmm_A 1015 Crystal Structure Of The Uba1-Ubiquitin Complex Len 2e-04
4ii2_A 1001 Crystal Structure Of Ubiquitin Activating Enzyme 1 4e-04
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463 Back     alignment and structure 
Iteration: 1

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 140/239 (58%), Gaps = 8/239 (3%)
Query: 1   MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
           ++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++
Sbjct: 198 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 257
Query: 61  WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXX 117
           W +      G   D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK          
Sbjct: 258 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 317
Query: 118 XXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
                 CA E  KIA+     L+NYL +N V GL+    E  + ++C  C      I+  
Sbjct: 318 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 377
Query: 177 TSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 231
            S  L++ ++ L     LQ+   ++  T  GKN  LY+Q+   +EE TR NLS  L +L
Sbjct: 378 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 436
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805 Back     alignment and structure
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434 Back     alignment and structure
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444 Back     alignment and structure
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431 Back     alignment and structure
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434 Back     alignment and structure
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660 Back     alignment and structure
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551 Back     alignment and structure
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640 Back     alignment and structure
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015 Back     alignment and structure
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 3e-96
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 2e-85
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 1e-40
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 7e-26
3cmm_A1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 9e-38
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 3e-16
1y8x_B98 Ubiquitin-activating enzyme E1C; ubiquitin-conjuga 6e-21
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 1e-07
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 3e-04
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Back     alignment and structure
 Score =  299 bits (766), Expect = 3e-96
 Identities = 114/271 (42%), Positives = 161/271 (59%), Gaps = 15/271 (5%)

Query: 1   MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
           ++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++
Sbjct: 540 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 599

Query: 61  WDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTN 117
           W +      G   D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTN
Sbjct: 600 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 659

Query: 118 AIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
           A+I+A CA E  KIA+     L+NYL +N V GL+    E  + ++C  C      I+  
Sbjct: 660 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 719

Query: 177 TSVTLEKFINLLEEHPKLQLAKASVT----YRGKNLYMQAPPVLEEMTRSNLSLPLYDLM 232
            S  L++ ++ L     LQ+   ++T     + + LY+Q+   +EE TR NLS  L +L 
Sbjct: 720 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL- 778

Query: 233 DKVAKDILHVTGVTGQSDKKTSCLRKLRVVF 263
             V    L V       D  T      ++ F
Sbjct: 779 GLVDGQELAVA------DVTTPQTVLFKLHF 803
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A Length = 98 Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531 Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
1y8q_B640 Anthracycline-, ubiquitin-like 2 activating enzyme 100.0
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 100.0
3cmm_A1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 100.0
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 100.0
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 99.89
1y8x_B98 Ubiquitin-activating enzyme E1C; ubiquitin-conjuga 99.64
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 99.45
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 99.41
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 99.23
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 99.2
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 99.2
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 99.07
4gsl_A615 Ubiquitin-like modifier-activating enzyme ATG7; ub 98.89
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 98.63
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 97.83
3onh_A127 Ubiquitin-activating enzyme E1-like; ligase, SUMO 97.72
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 97.55
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 96.95
1tt5_A531 APPBP1, amyloid protein-binding protein 1; cell cy 95.7
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Back     alignment and structure
Probab=100.00  E-value=4.6e-55  Score=435.17  Aligned_cols=250  Identities=27%  Similarity=0.410  Sum_probs=208.2

Q ss_pred             CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhh---------------------
Q 023706            1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---------------------   59 (278)
Q Consensus         1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~---------------------   59 (278)
                      ||+||+.|+.||+++++|+.|+||+|.+.  |+++++|+||++++|+.++|||+||+++                     
T Consensus       136 lI~~g~~G~~G~v~vi~p~~t~Cy~C~~~--p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~  213 (640)
T 1y8q_B          136 LIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADP  213 (640)
T ss_dssp             EEEEEEETTEEEEEEECTTTSCCTTSSCC--CCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCT
T ss_pred             EEEEEEecccceEEEECCCCCCCcccCCC--CCCcccceeeecCCCCchHHHHHHHHHHHHHHhCCcchhhhhcccccch
Confidence            58999999999999999999999999864  6778999999999999999999999985                     


Q ss_pred             ----------------------------h------------------------------hccc-----------------
Q 023706           60 ----------------------------K------------------------------WDEV-----------------   64 (278)
Q Consensus        60 ----------------------------~------------------------------~~~~-----------------   64 (278)
                                                  .                              |..+                 
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~P~pl~fd~~~~~~~~  293 (640)
T 1y8q_B          214 EAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE  293 (640)
T ss_dssp             TSCCC---------------------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCCCCCCCHHHHHHC---
T ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHhhhhHHHhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCCCCCcccCcccccccc
Confidence                                        1                              2110                 


Q ss_pred             ---------------------------------------------CCCCccCCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 023706           65 ---------------------------------------------HSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTY   99 (278)
Q Consensus        65 ---------------------------------------------~~~~~FdkDd~~hi~fI~aaanlRA~~y~I~~~~~   99 (278)
                                                                   ..++.|||||++||+||+||||+||++|||+++++
T Consensus       294 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~dFV~aaaNlRA~~y~I~~~~~  373 (640)
T 1y8q_B          294 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSR  373 (640)
T ss_dssp             -----------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCH
T ss_pred             ccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHHHHHHHHHHHHHHcCCCcCCH
Confidence                                                         12457999999999999999999999999999999


Q ss_pred             hhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCc-ceEEEe--cCCCceeeeeecccCCCCccCC-C---cEE
Q 023706          100 SLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYN--GVAGLHIKVTEFVKDKDCLVCG-P---GVL  172 (278)
Q Consensus       100 ~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~-~~~~~~--~~~~~~~~~~~~~~~p~C~vC~-~---~~~  172 (278)
                      +++|+||||||||||||||+||||+++|++|++++..+..+ .|+.+.  +...+.......+|+|+|++|+ .   |++
T Consensus       374 ~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~  453 (640)
T 1y8q_B          374 FDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVR  453 (640)
T ss_dssp             HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEE
T ss_pred             HHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEeecccCCCCCCCcccCCccEEEEE
Confidence            99999999999999999999999999999999998654333 455432  2222444555568999999995 3   444


Q ss_pred             EEeCCCCCHHHHHHHH-HcCccCcceeeEEEe---CCcEEEeeCCCchhhhhccccCCcHHHh-hcccccceeeeccccc
Q 023706          173 IELDTSVTLEKFINLL-EEHPKLQLAKASVTY---RGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTG  247 (278)
Q Consensus       173 i~i~~~~TL~~li~~l-~~~~~~~l~~~~i~~---g~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~~~~~~~~~~~~~~  247 (278)
                      ++++ ++||++|++++ +++|  ++++++|+.   |.++||.++.++.+    .||+++|++| +++|  +++      .
T Consensus       454 ~~~~-~~TL~~li~~~~~~~~--~l~~~~is~~~~~~~~ly~~~~~~~~----~~l~~~l~el~v~~~--~~~------~  518 (640)
T 1y8q_B          454 LNVH-KVTVLTLQDKIVKEKF--AMVAPDVQIEDGKGTILISSEEGETE----ANNHKKLSEFGIRNG--SRL------Q  518 (640)
T ss_dssp             ECTT-TCBHHHHHHCCCCCCT--CCSSCEEEESSSSCCEEECSSSSSST----TGGGSBGGGGTCCTT--CEE------E
T ss_pred             EeCC-CCcHHHHHHHHHHHhh--CCCCceEEEEcCCCcEEEeccchhhH----HhhhCcHHHhCccCC--cEE------E
Confidence            4433 79999999996 6555  899999999   88999987644433    4999999997 9999  799      9


Q ss_pred             cccCCcceEEEEEEEEecCC
Q 023706          248 QSDKKTSCLRKLRVVFRGVD  267 (278)
Q Consensus       248 v~d~~~~~~~~l~~~~~~~~  267 (278)
                      |+|..+++.+.|.+.|+++.
T Consensus       519 v~d~~~~~~~~i~~~~~~~~  538 (640)
T 1y8q_B          519 ADDFLQDYTLLINILHSEDL  538 (640)
T ss_dssp             EEETTTTEEEEEEEEECSCC
T ss_pred             ecCCCccEEEEEEEEecCcc
Confidence            99999999999999997544
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 278
d1yovb1426 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T 5e-84
d1y8xb192 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [ 2e-21
d1yova1 529 c.111.1.2 (A:6-534) Amyloid beta precursor protein 2e-07
d1jw9b_247 c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr 8e-04
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  256 bits (654), Expect = 5e-84
 Identities = 112/254 (44%), Positives = 157/254 (61%), Gaps = 9/254 (3%)

Query: 1   MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 60
           ++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++
Sbjct: 166 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 225

Query: 61  WDEVHS---GKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTN 117
           W +      G   D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTN
Sbjct: 226 WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN 285

Query: 118 AIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELD 176
           A+I+A CA E  KIA+     L+NYL +N V GL+    E  + ++C  C      I+  
Sbjct: 286 AVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFS 345

Query: 177 TSVTLEKFINLLEEHPKLQLAKASVT----YRGKNLYMQAPPVLEEMTRSNLSLPLYDLM 232
            S  L++ ++ L     LQ+   ++T     + + LY+Q+   +EE TR NLS  L +L 
Sbjct: 346 PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 405

Query: 233 DKVAKDILHVTGVT 246
                  L V  VT
Sbjct: 406 LVDG-QELAVADVT 418
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
d1yovb1426 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1y8xb192 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 99.55
d1jw9b_247 Molybdenum cofactor biosynthesis protein MoeB {Esc 99.14
d1yova1529 Amyloid beta precursor protein-binding protein 1, 96.01
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-60  Score=450.73  Aligned_cols=251  Identities=44%  Similarity=0.804  Sum_probs=212.1

Q ss_pred             CEEeeecCcceEEEEEcCCCCCcccccCCCCCCCCCCCcccccCCCCCcchhhhhhhhhhhcccC---CCCccCCCChHH
Q 023706            1 MVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEH   77 (278)
Q Consensus         1 LIe~Gt~G~~G~v~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~HcI~wa~~~~~~~~~---~~~~FdkDd~~h   77 (278)
                      ||+||+.|++||+++++|+.|+||+|.++..|+++++|.|||+++|+.|+|||+|||.+.|.+.+   ....||+||++|
T Consensus       166 lI~gg~~G~~G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~~~~~~~~d~dd~~~  245 (426)
T d1yovb1         166 LIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEH  245 (426)
T ss_dssp             EEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTSTTCCCCTTCHHH
T ss_pred             eEEeEEeeeEEEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhcccccccccccCCCCCCCHHH
Confidence            68999999999999999999999999998888899999999999999999999999999999877   478899999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCccchhhhhhhccccccccchhhhHHHHHHHHHHHHHhcCCCCCcceEEEecCCCceeeeee
Q 023706           78 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE  157 (278)
Q Consensus        78 i~fI~aaanlRA~~y~I~~~~~~~~k~iag~IIPAIaTT~AiVagl~~~E~~K~l~g~~~~~~~~~~~~~~~~~~~~~~~  157 (278)
                      |+||+++||+||.+|+|++.+++.++++|||||||||||||||||++++|++|++++....++|+++|++..+..+..++
T Consensus       246 i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n~~~~~~~~~~~~~~~~  325 (426)
T d1yovb1         246 IQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFE  325 (426)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccceEEEecCCCceEeeee
Confidence            99999999999999999999999999999999999999999999999999999999998888999999999998888898


Q ss_pred             cccCCCCccCCC-cEEEEeCCCCCHHHHHHHHHcCccCcceeeEEE----eCCcEEEeeCCCchhhhhccccCCcHHHh-
Q 023706          158 FVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVT----YRGKNLYMQAPPVLEEMTRSNLSLPLYDL-  231 (278)
Q Consensus       158 ~~~~p~C~vC~~-~~~i~i~~~~TL~~li~~l~~~~~~~l~~~~i~----~g~~~lY~~~~~~~~~~~~~~l~~~l~~l-  231 (278)
                      ++|+|+|++|+. +.++++++++||+||+++++++|++++..|++.    .++++||+.+++++++.++.||+|+|+|| 
T Consensus       326 ~~k~~~C~vC~~~~~~~~~~~~~tL~~li~~~~~~~~l~~~~p~~~~~~~~~~~~Ly~~~~~~le~~~~~nl~k~L~eL~  405 (426)
T d1yovb1         326 AERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG  405 (426)
T ss_dssp             CCCCTTCTTTCSSCBCCC------CTTHHHHTTTCSSSCCSSCCEECC-----CEECCCC----CGGGSTTC--------
T ss_pred             ccCCCCCCeeCCceEEEEECCCCCHHHHHHHHHHhhCcCccCCcceeeecCCCcEEEecCCchhhHHhhhhhcCCHHHhC
Confidence            999999999998 888888889999999999999998888877664    36789999888888888999999999999 


Q ss_pred             hcccccceeeeccccccccCCcceEEEE
Q 023706          232 MDKVAKDILHVTGVTGQSDKKTSCLRKL  259 (278)
Q Consensus       232 v~~~~~~~~~~~~~~~v~d~~~~~~~~l  259 (278)
                      +.+|  ++|      .|+|...|.++.|
T Consensus       406 ~~~g--~~l------~v~D~~~~~~~~~  425 (426)
T d1yovb1         406 LVDG--QEL------AVADVTTPQTVLF  425 (426)
T ss_dssp             --------C------BCCBTTBSSCCBB
T ss_pred             CCCC--CEE------EEECCCCCcceec
Confidence            9999  899      9999999977654
>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure