Citrus Sinensis ID: 023738

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MKKIINKGFSLSLSPSGSGIKPGARFDSSISVRSSTTSTATSTASAAETNMNSPCREKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV
cccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccEEEEEEEEcccEEEEEEcccccccccccccccccEEccccccccccccccccccccEEEcccccccccccccccEEEEEEcccccHHcccccccEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEcccccEEccccccEEEEccccccEEEcccccccEEEcccEEEEcccccEEEccccccEEEc
ccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcHHHHHHHccccccccccEEEEEccccccEEEEEcccccEEEEEEEccEEEEEcccccccEEEEcccccccccccEEccccccccccccccccccccccccccEEEccccccccccccccEEEEEEEcccHcccccccccEEEEEEEEEccccEEEEEEEEEEEccccccEEEEHHHHHHEEcccccEEEEEcccccHHHHccccccHccccccEEEEcccccEEEEccccEEEEc
mkkiinkgfslslspsgsgikpgarfdssisvrssttstatstasaaetnmnspcreKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLsskatfthpkpirggipicfpqfanhgslekhgfarsrvwsidpdpppfsansssqACVDLILKHSEEEVKIWPHRYEFRLRitlgpggdlmltsrirntntdgksfAFTFAYHTYFAVSDISEVRVEGLetldyldnlkdkerfteqgdaitfESEVSVcsnlddsrialv
mkkiinkgfslslspsgsgikpgarfdssisvrssttstatstasaaetnmnspCREKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEqgdaitfesevsvcsnlddsrialv
MKKIINkgfslslspsgsgikpgARFDSSISVRssttstatstasaaETNMNSPCREKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSfaftfayhtyfaVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV
********************************************************EKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSI**************ACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSV************
********F***************************************************VEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV
MKKIINKGFSLSLSPSGSGIKPGARFDS***********************NSPCREKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV
*KKIINKGFSLSLSP*GSGI*P**RFDSSISVRSSTTSTATSTASAA**********KLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
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MKKIINKGFSLSLSPSGSGIKPGARFDSSISVRSSTTSTATSTASAAETNMNSPCREKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query278 2.2.26 [Sep-21-2011]
Q40784329 Putative glucose-6-phosph N/A no 0.787 0.665 0.712 2e-89
Q03161297 Glucose-6-phosphate 1-epi yes no 0.636 0.595 0.311 3e-17
P39173294 Putative glucose-6-phosph N/A no 0.571 0.540 0.329 3e-16
P44160271 Putative glucose-6-phosph yes no 0.377 0.387 0.280 8e-07
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function desciption
 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/219 (71%), Positives = 176/219 (80%)

Query: 60  FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIR 119
           F E  K  +GLEKVVLR  R C AEIYLYGGQV SWKN+ GEELLFLSSKA F  PK IR
Sbjct: 23  FAELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIR 82

Query: 120 GGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIW 179
           GGIPIC PQF  HG+LE+HGFAR+R WSID DPPP   N + +A VDLIL+ +EE++KIW
Sbjct: 83  GGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIW 142

Query: 180 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETL 239
           PH +EFRLR+ LGP GDL LTSRIRNTNTDG+ F++TFAYHTYF VSDISEVRVEGLET+
Sbjct: 143 PHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETM 202

Query: 240 DYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV 278
           DYLDNLK KERFTEQGDAI FESEV        S+IA++
Sbjct: 203 DYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAII 241

Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function description
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
224053080309 predicted protein [Populus trichocarpa] 0.798 0.718 0.779 1e-100
224075930319 predicted protein [Populus trichocarpa] 0.798 0.695 0.774 2e-99
225446010314 PREDICTED: putative glucose-6-phosphate 0.798 0.707 0.770 3e-98
356521701314 PREDICTED: putative glucose-6-phosphate 0.802 0.710 0.739 6e-97
356523461314 PREDICTED: putative glucose-6-phosphate 0.802 0.710 0.730 4e-95
255543425360 aldose 1-epimerase, putative [Ricinus co 0.784 0.605 0.753 2e-93
357166477337 PREDICTED: putative glucose-6-phosphate 0.859 0.709 0.682 3e-93
357467683309 hypothetical protein MTR_4g005740 [Medic 0.791 0.711 0.718 1e-92
356556210330 PREDICTED: putative glucose-6-phosphate 0.784 0.660 0.729 9e-92
356530308321 PREDICTED: putative glucose-6-phosphate 0.784 0.679 0.729 1e-91
>gi|224053080|ref|XP_002297697.1| predicted protein [Populus trichocarpa] gi|222844955|gb|EEE82502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 195/222 (87%)

Query: 57  EKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPK 116
           E  +VE CKG+NGL+K++LREVRGCSAE+YLYGG V SWKNE+GEELLF+SSKA F  PK
Sbjct: 4   ETKYVELCKGINGLDKIILREVRGCSAEVYLYGGHVTSWKNEHGEELLFVSSKAIFKPPK 63

Query: 117 PIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEV 176
            IRGGIPICFPQF+N GSLE HGFAR+R W+ID DPPPF  NSS++A +DLILKHSEE+V
Sbjct: 64  TIRGGIPICFPQFSNLGSLEPHGFARTRFWTIDNDPPPFPINSSNKAFIDLILKHSEEDV 123

Query: 177 KIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGL 236
           KIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSF FTFAYHTYF V+DISEVRVEGL
Sbjct: 124 KIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFTFTFAYHTYFHVTDISEVRVEGL 183

Query: 237 ETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV 278
           ETLDYLDNLK++ERFTEQGDAI FESEV        ++IA++
Sbjct: 184 ETLDYLDNLKNRERFTEQGDAIVFESEVDKVYLSTPTKIAIL 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224075930|ref|XP_002304833.1| predicted protein [Populus trichocarpa] gi|222842265|gb|EEE79812.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225446010|ref|XP_002268176.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|297735418|emb|CBI17858.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521701|ref|XP_003529490.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356523461|ref|XP_003530357.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information
>gi|255543425|ref|XP_002512775.1| aldose 1-epimerase, putative [Ricinus communis] gi|223547786|gb|EEF49278.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357166477|ref|XP_003580723.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357467683|ref|XP_003604126.1| hypothetical protein MTR_4g005740 [Medicago truncatula] gi|355505181|gb|AES86323.1| hypothetical protein MTR_4g005740 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356556210|ref|XP_003546419.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356530308|ref|XP_003533724.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like isoform 1 [Glycine max] gi|356530310|ref|XP_003533725.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.798 0.711 0.644 1.1e-73
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.723 0.634 0.588 5e-60
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.744 0.676 0.549 9.6e-57
TAIR|locus:2117572318 AT4G25900 [Arabidopsis thalian 0.755 0.660 0.532 2.5e-56
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.726 0.660 0.533 4.2e-56
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.744 0.676 0.526 2.9e-55
TAIR|locus:2154870307 AT5G66530 [Arabidopsis thalian 0.687 0.622 0.341 1e-22
ASPGD|ASPL0000045178315 AN10222 [Emericella nidulans ( 0.701 0.619 0.325 2.7e-20
DICTYBASE|DDB_G0277669328 DDB_G0277669 "aldose 1-epimera 0.708 0.600 0.288 3.6e-18
UNIPROTKB|Q9KQJ7296 VC_2001 "Putative uncharacteri 0.586 0.550 0.310 4.6e-18
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 143/222 (64%), Positives = 170/222 (76%)

Query:    57 EKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPK 116
             E+   E  KG+NGL+K+VLRE RG SAE+YLYG  V SWKNE GEELL LSSKA F  PK
Sbjct:     4 ERHHFELAKGINGLDKIVLRESRGRSAEVYLYGSHVTSWKNENGEELLHLSSKAIFKPPK 63

Query:   117 PIRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEV 176
             PIRGGIP+CFPQF+N G+LE HGFAR+R+W ++ +PPP   NS S A VDLIL+ +E+++
Sbjct:    64 PIRGGIPLCFPQFSNFGTLESHGFARNRIWEVEANPPPLPLNSCSSAFVDLILRPTEDDL 123

Query:   177 KIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGL 236
             KIWP+ +EFRLRI LG  G+L LTSRIRNTN+DGK             VSDISEVRVEGL
Sbjct:   124 KIWPNNFEFRLRIALGTEGELTLTSRIRNTNSDGKPFTFTFAYHTYFSVSDISEVRVEGL 183

Query:   237 ETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV 278
             ETLDYLDNLKD+ERFTEQGDAITFESEV        ++IA++
Sbjct:   184 ETLDYLDNLKDRERFTEQGDAITFESEVDKIYLSTPTKIAIL 225
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154870 AT5G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277669 DDB_G0277669 "aldose 1-epimerase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40784AAPC_CENCI5, ., 1, ., 3, ., 1, 50.71230.78770.6656N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.6846.1
hypothetical protein (309 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VIII.2574.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (569 aa)
     •  0.899
gw1.II.3030.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (542 aa)
     •  0.899
fgenesh4_pm.C_LG_I000617
hexokinase (508 aa)
     •  0.899
fgenesh4_pg.C_LG_VII001238
hexokinase (EC-2.7.1.2) (502 aa)
     •  0.899
fgenesh4_pg.C_LG_IX001086
hexokinase (508 aa)
     •  0.899
eugene3.00121193
phosphoglucomutase (EC-5.4.2.2) (631 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_VIII0571
phosphoglucomutase (EC-5.4.2.2) (582 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_XVIII0751
hexokinase (EC-2.7.1.1) (498 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_XV1054
phosphoglucomutase (EC-5.4.2.2) (551 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_X0989
phosphoglucomutase (EC-5.4.2.2) (582 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 4e-73
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 2e-39
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 2e-35
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 8e-25
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 5e-13
COG2017308 COG2017, GalM, Galactose mutarotase and related en 7e-08
cd09024288 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim 4e-04
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
 Score =  224 bits (573), Expect = 4e-73
 Identities = 89/189 (47%), Positives = 111/189 (58%), Gaps = 14/189 (7%)

Query: 80  GCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG---SLE 136
           G SAEI L G QV+SWK + G++LL+LS +A F   K IRGGIP+C+P F  HG    L 
Sbjct: 8   GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLP 67

Query: 137 KHGFARSRVWSIDPDPPPFSANSSSQ-ACVDLILKHSEEEVKIWPHRYEFRLRITLGPGG 195
            HGFAR+R+W +         +       V L L  ++E   IWPH +E RL +TLG   
Sbjct: 68  AHGFARTRLWELL------EVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDT 121

Query: 196 DLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQG 255
              L   +  TNT  K F+FT A HTYF VSDI +VRVEGLE   YLD L D+     QG
Sbjct: 122 ---LELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQRE-KVQG 177

Query: 256 DAITFESEV 264
            A+TF+ EV
Sbjct: 178 GAVTFDGEV 186

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 278
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 99.96
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 99.95
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 99.94
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 99.94
PRK15172300 putative aldose-1-epimerase; Provisional 99.89
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 99.89
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.87
cd09019 326 galactose_mutarotase_like galactose mutarotase_lik 99.84
PLN00194 337 aldose 1-epimerase; Provisional 99.79
TIGR02636 335 galM_Leloir galactose mutarotase. Members of this 99.77
PRK11055 342 galM galactose-1-epimerase; Provisional 99.76
PTZ00485 376 aldolase 1-epimerase; Provisional 99.65
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.32
KOG1604 353 consensus Predicted mutarotase [Carbohydrate trans 99.26
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 98.33
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 98.01
PF14315274 DUF4380: Domain of unknown function (DUF4380) 97.11
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 94.54
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 90.94
PRK01318 521 membrane protein insertase; Provisional 90.91
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-53  Score=378.31  Aligned_cols=213  Identities=66%  Similarity=1.128  Sum_probs=200.0

Q ss_pred             eEEEEecCCCeeEEEEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCCCCCCCc
Q 023738           60 FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHG  139 (278)
Q Consensus        60 ~~~~~~~~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~~~~HG  139 (278)
                      .+...++.+|++.|.|+++++.+|+|++|||+|+||+...|+|.||++..+.|++.||||||||+|||+||..+.+++||
T Consensus        13 ~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHG   92 (305)
T KOG1594|consen   13 PVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHG   92 (305)
T ss_pred             cceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCcccccc
Confidence            46778899999999999999999999999999999999889999999999999999999999999999999989999999


Q ss_pred             eecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecc
Q 023738          140 FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAY  219 (278)
Q Consensus       140 faR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~  219 (278)
                      |||++.|.++....+++  ..+.+.|.|.|.+++++++.|||.|++++++.|++ +.|+++.+|+|+  +++||.|++++
T Consensus        93 FaRn~~W~v~~~p~~lp--~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt--d~KpFsF~~al  167 (305)
T KOG1594|consen   93 FARNRFWEVENNPPPLP--SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT--DSKPFSFSFAL  167 (305)
T ss_pred             cccceeeEeccCCCCCC--cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC--CCCceEEEeEe
Confidence            99999999998765443  22467899999999999999999999999999996 889999999999  99999999999


Q ss_pred             cccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCCCceee
Q 023738          220 HTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIAL  277 (278)
Q Consensus       220 HpYF~v~d~~~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~~~~~i  277 (278)
                      ||||+|+|+..++|+||+|++|+|++.+..++++++++|+|.+++||||+++|..+.|
T Consensus       168 HtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI  225 (305)
T KOG1594|consen  168 HTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAI  225 (305)
T ss_pred             eeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEE
Confidence            9999999999999999999999999999998999999999999999999999988775

>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 7e-13
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 8e-13
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 1e-12
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 3e-08
3k25_A289 Crystal Structure Of Slr1438 Protein From Synechocy 3e-06
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 81  CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS------ 134
            S  I  YG  V SWK +  EE L+LS+ A     KP+RGGIP+ FP F  + +      
Sbjct: 20  TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 191
           L +HG AR+  W              +   V   LK    + E  K+WP  Y   L + L
Sbjct: 79  LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 192 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 251
             G D + T+      +  K             + DI    V  L  +   D L  KE +
Sbjct: 133 --GSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 252 TEQGDAITFESEVSVC 267
            ++   +TF  E  V 
Sbjct: 190 VDKHPVVTFNQETDVI 205
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 3e-58
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 1e-57
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 3e-56
1jov_A270 HI1317; hypothetical protein, structure 2 function 6e-40
3q1n_A294 Galactose mutarotase related enzyme; structural ge 3e-29
3dcd_A 307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 3e-29
3os7_A341 Galactose mutarotase-like protein; structural geno 5e-16
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 3e-14
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 3e-12
3ty1_A 384 Hypothetical aldose 1-epimerase; supersandwich, st 7e-07
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
 Score =  187 bits (475), Expect = 3e-58
 Identities = 64/207 (30%), Positives = 89/207 (42%), Gaps = 21/207 (10%)

Query: 69  GLEKVVLREVRG--CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICF 126
             ++VVL        S  I  YG  V SWK +  EE L+LS+ A     KP+RGGIP+ F
Sbjct: 6   TDKEVVLTHPADETTSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVF 64

Query: 127 PQFANH------GSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKH---SEEEVK 177
           P F  +        L +HG AR+  W              +   V   LK    + E  K
Sbjct: 65  PVFGKNSTDEHLSKLPQHGLARNSTWEFL------GQTKENPPTVQFGLKPEIANPELTK 118

Query: 178 IWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLE 237
           +WP  Y   L + LG    L     + NT++  K   F + +HTYF + DI    V  L 
Sbjct: 119 LWPMDYLLILTVELGSDY-LKTAIEVENTSSS-KELKFNWLFHTYFRIEDIEGTMVSNLA 176

Query: 238 TLDYLDNLKDKERFTEQGDAITFESEV 264
            +   D L  KE + ++   +TF  E 
Sbjct: 177 GMKLYDQL-LKESYVDKHPVVTFNQET 202
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Length = 384 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 99.96
3dcd_A 307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 99.96
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 99.96
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 99.96
3os7_A341 Galactose mutarotase-like protein; structural geno 99.95
1yga_A 342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 99.94
1snz_A 344 Aldose 1-epimerase; mutarotase, galactosemia, isom 99.91
1nsx_A 347 Galactose mutarotase; epimerase, galactose metabol 99.88
1lur_A 339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.88
3imh_A 338 Galactose-1-epimerase; structural genomics, PSI-2, 99.86
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.85
3ty1_A 384 Hypothetical aldose 1-epimerase; supersandwich, st 99.54
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 91.92
3blc_A 330 Inner membrane protein OXAA; YIDC, membrane assemb 88.83
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
Probab=100.00  E-value=1.1e-38  Score=289.96  Aligned_cols=195  Identities=24%  Similarity=0.392  Sum_probs=160.7

Q ss_pred             ccceEEEEecCCCeeEEEEEcCCceEEEEECCCcEEEEEEeC-CCeEEEecCCccccCCCCCCcCCcceeccccCCCCCC
Q 023738           57 EKLFVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNE-YGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSL  135 (278)
Q Consensus        57 ~~~~~~~~~~~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~-~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~~  135 (278)
                      +...+++. ..+|++.++|+++. .+|+|.++||+|+||+.+ +|.|+||+++.+.|+..++||||+||||||||+.. +
T Consensus         9 ~~~~~~~~-~~~~~~~~~l~~~~-~~a~i~~~Ga~l~s~~~~~~g~e~Lw~~~~~~~~~~~~irGGiPvlfP~~gr~~-~   85 (270)
T 1jov_A            9 LTPELHLV-QHNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVK-Q   85 (270)
T ss_dssp             EETTEEEE-EETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGGS-S
T ss_pred             CCCceEEe-eeCCceEEEEeCCC-cEEEEECCCCEEEEEEECCCCceEEEECcHHhcCCCCCccCccEEEEeccCCCC-C
Confidence            34456665 47999999999986 799999999999999985 57899999999999999999999999999999964 7


Q ss_pred             CCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeee
Q 023738          136 EKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAF  215 (278)
Q Consensus       136 ~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf  215 (278)
                      ++|||||++.|+|.+...     +++...++|.+.+++       +.|+++++|+|.    |+++++|+|+  |++  ||
T Consensus        86 ~~HGfaR~~~W~v~~~~~-----~~~~v~l~~~l~~~~-------~~f~l~~~~~L~----l~~~~~v~N~--g~~--p~  145 (270)
T 1jov_A           86 PAHGTARIRLWQLSHYYI-----SVHKVRLEFELFSDL-------NIIEAKVSMVFT----DKCHLTFTHY--GEE--SA  145 (270)
T ss_dssp             STTBSGGGSBCEEEEEEE-----ETTEEEEEEEEECTT-------SCEEEEEEEEES----SSEEEEEEEC--CSS--CE
T ss_pred             CCCceecCCCcEEeeecc-----CCCcEEEEEEECCCc-------cccEEEEEEEEC----CeEEEEEEeC--Cch--hH
Confidence            999999999999997631     234556788887653       348889999995    5678888898  875  68


Q ss_pred             eecccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCCCceee
Q 023738          216 TFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIAL  277 (278)
Q Consensus       216 ~~g~HpYF~v~d~~~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~~~~~i  277 (278)
                      ++|+||||+++|+++++|.|+.+ .|+|++.+...  .+.+.+.|.+++||||.+.+..++|
T Consensus       146 ~~g~HpyF~v~d~~~~~v~g~~~-~~~d~l~~~~~--~~~~~~~~~~~~D~vy~~~~~~~~i  204 (270)
T 1jov_A          146 QAALHTYFNIGDINQVEVQGLPE-TCFNSLNQQQE--NVPSPRHISENVDCIYSAENMQNQI  204 (270)
T ss_dssp             EEEECCEEECSCGGGEEEESCCS-EEEETTTTEEE--ECCSSBCCSSCEEEEEECSSSEEEE
T ss_pred             hhhcccceecCCcceEEEECCCC-cceeccCCccc--ccCCcccCCCCccceeCCCCCCEEE
Confidence            99999999999999999999955 89998765433  2345788999999999987665554
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 278
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 2e-46
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score =  154 bits (391), Expect = 2e-46
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 30/220 (13%)

Query: 60  FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYG-EELLFLSSKATFTHPKPI 118
            V+H    N +  + L +    +A+I L G Q+ISWK +   +++L+LS    F +   I
Sbjct: 15  LVQH----NDIPVLHL-KHAVGTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAI 69

Query: 119 RGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKI 178
           RGG+PIC+P F        HG AR R+W +       S    S   V L       E+  
Sbjct: 70  RGGVPICYPWFGGVK-QPAHGTARIRLWQL-------SHYYISVHKVRLEF-----ELFS 116

Query: 179 WPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLET 238
             +  E ++         ++ T +   T T     +   A HTYF + DI++V V+GL  
Sbjct: 117 DLNIIEAKVS--------MVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPE 168

Query: 239 LDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV 278
             +    + +E              V    + ++ +  ++
Sbjct: 169 TCFNSLNQQQE---NVPSPRHISENVDCIYSAENMQNQIL 205

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1nsza_ 340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.7
d1z45a1 342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.68
d1lura_ 329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.66
d1so0a_ 344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.58
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2.5e-41  Score=304.77  Aligned_cols=192  Identities=24%  Similarity=0.374  Sum_probs=156.4

Q ss_pred             eEEEEecCCCeeEEEEEcCCceEEEEECCCcEEEEEEeCC-CeEEEecCCccccCCCCCCcCCcceeccccCCCCCCCCC
Q 023738           60 FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEY-GEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKH  138 (278)
Q Consensus        60 ~~~~~~~~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~-g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~~~~H  138 (278)
                      .+++.+ .++++.++|+|+. ++|+|+++||+|+||++++ ++|+||+++++.|+.++||||||||||||||+. .+|+|
T Consensus        12 ~~~~~~-~~~l~~i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~-~~p~H   88 (269)
T d1jova_          12 ELHLVQ-HNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-KQPAH   88 (269)
T ss_dssp             TEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-SSSTT
T ss_pred             eEEeec-cCCccEEEEeCCC-EEEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCCC-CCCCC
Confidence            466665 6999999999996 8999999999999999864 579999999999999999999999999999984 57999


Q ss_pred             ceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeec
Q 023738          139 GFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFA  218 (278)
Q Consensus       139 GfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g  218 (278)
                      ||||++.|+|++...       +...+.+++.     ...|||.|+++++|+|+.      +++|+|+  ++++|||++|
T Consensus        89 GFAR~~~w~l~~~~~-------~~~~~~l~~~-----l~~~~~~f~~~~~~~ltl------~~~l~n~--~~~~~pf~~g  148 (269)
T d1jova_          89 GTARIRLWQLSHYYI-------SVHKVRLEFE-----LFSDLNIIEAKVSMVFTD------KCHLTFT--HYGEESAQAA  148 (269)
T ss_dssp             BSGGGSBCEEEEEEE-------ETTEEEEEEE-----EECTTSCEEEEEEEEESS------SEEEEEE--ECCSSCEEEE
T ss_pred             ccccccceEEEEEec-------CCceEEEEEE-----eccCCCcceEEEEEEecc------EEEEEEc--cCCCccceec
Confidence            999999999998742       2333444332     234788899998888853      3455677  6678999999


Q ss_pred             ccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCCCceee
Q 023738          219 YHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIAL  277 (278)
Q Consensus       219 ~HpYF~v~d~~~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~~~~~i  277 (278)
                      +||||+|+|++++.+.||++..|.++... .  ..+.+.+.|.+++||||.+.+..+.|
T Consensus       149 ~HpyF~v~d~~~~~v~gl~~~~~~~~~~~-~--~~~~~~~~~~~~~D~i~~~~~~~~~i  204 (269)
T d1jova_         149 LHTYFNIGDINQVEVQGLPETCFNSLNQQ-Q--ENVPSPRHISENVDCIYSAENMQNQI  204 (269)
T ss_dssp             ECCEEECSCGGGEEEESCCSEEEETTTTE-E--EECCSSBCCSSCEEEEEECSSSEEEE
T ss_pred             ccceEecCCccceEEecCCcccccccccc-c--cccCCCcccCcCeeEEecCCCCcEEE
Confidence            99999999999999999999777665432 2  22345688999999999998776654
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure