Citrus Sinensis ID: 023768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRVTFSPILEFTANTYFNLI
Secondary Structure (PSIPRED)
cccccccEEEEEccccccEEEccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccHHHHHHEcccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEEHHHHEEEEEcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccccEEEHccEEEccc
Coil and Loop (DISEMBL)
MALTFGKLTFLVGAGILTSVLakegrlssvsdavgGTLKIVSKLikqddpgpsdrKLFNDLLAEVSSVQQELshvprsviietssgsgtgakkYGVIVVIVAVGYGYVwwkgwklpdmmfATRRSLSDACNSVARQLEDVYSSISAAQRQLSSkitsvdrdvNKIVEISQATQEEVTILRGrskligdefQSVRDIVQTLESKLIEIegkqdittLGVKKLCDRArelengrptelvqasrytlsrttlelpgitpssrvtfspileftantyfnli
Flexible Loop (DISEMBL)
maltfgkltflVGAGILTSVLAKegrlssvsdavggTLKIVSklikqddpgpSDRKLFNDLLAEVSSVqqelshvprsviietssgsgtgakkyGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQrqlsskitsvdrdvNKIVeisqatqeevtilrgrskligdefqSVRDIVQTLESKlieiegkqdittlgVKKLCDRarelengrptelvqasrytlsrttlelpgitpssrvtfspileftantyfnli
Low Complexity Region (SEG)
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTgakkygvivvivavgygyvWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRVTFSPILEFTANTYFNLI
Disordered region (IsUnstruct)
**LTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLI***************LL***************SVIIE******TGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSI*************VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL*******LVQASRYTLSRTTLELPGITPSSRVTFSPILEFTANTYFN**
Disordered Region (DISOPRED)
***TFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGG**************************AEVSSVQQ*********************KKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI**AT***VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA******************************************FTANTYFNLI
Disordered Region (DISEMBL)
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRVTFSPILEFTANTYFNLI
Disordered Region (DISPRO)
**LTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIK********RKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE********************************FSPILEFTANTYFNLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRVTFSPILEFTANTYFNLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
297738479	361	unnamed protein product [Vitis vinifera]	0.949	0.728	0.575	2e-64
225425366	360	PREDICTED: uncharacterized protein LOC10	0.953	0.733	0.569	2e-64
326417169	360	B-zip transcription factor [Vitis pseudo	0.953	0.733	0.569	3e-64
289466339	360	B-zip transcription factor [Vitis pseudo	0.953	0.733	0.569	7e-64
449445554	366	PREDICTED: uncharacterized protein LOC10	0.949	0.718	0.525	6e-61
397746441	362	bZIP9 [Tamarix hispida]	0.945	0.723	0.501	2e-58
224072554	363	predicted protein [Populus trichocarpa]	0.844	0.644	0.552	3e-58
255578294	368	DNA binding protein, putative [Ricinus c	0.866	0.652	0.533	7e-58
255580725	290	DNA binding protein, putative [Ricinus c	0.761	0.727	0.558	6e-55
297851156	349	predicted protein [Arabidopsis lyrata su	0.945	0.750	0.452	3e-54

>gi|297738479|emb|CBI27680.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/264 (57%), Positives = 186/264 (70%), Gaps = 1/264 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QA
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 240 SRYTLSRTTLELPGITPSSRVTFS 263
           S  +  R  LEL   TP  R T S
Sbjct: 241 SPSSSFRPALELRQTTPPLRQTES 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425366|ref|XP_002270179.1| PREDICTED: uncharacterized protein LOC100248973 [Vitis vinifera]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 1/265 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QA
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 240 SRYTLSRTTLELPGITPSSRVTFSP 264
           S  +  R  LEL   TP  R    P
Sbjct: 241 SPSSSFRPALELRQTTPPLRTESLP 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326417169|gb|ADZ73426.1| B-zip transcription factor [Vitis pseudoreticulata]

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 1/265 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QA
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 240 SRYTLSRTTLELPGITPSSRVTFSP 264
           S  +  R  LEL   TP  R    P
Sbjct: 241 SPSSSFRPALELRQTTPPLRTESLP 265

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466339|gb|ADC94855.1| B-zip transcription factor [Vitis pseudoreticulata]

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 1/265 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND
Sbjct: 1   MALPLGKLTLLVGAGIVGSVLAKEGRMSDVSNFFSGAPKIALKQLKQDDSTSPTVKPKND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            LLA+V+S++QEL  +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMM
Sbjct: 61  ALLAQVNSLRQELQILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+S+A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  L
Sbjct: 121 FATRRSLSDACSSIAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239
           RG  K+IG +  SV+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QA
Sbjct: 181 RGGMKMIGGDVASVQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQA 240

Query: 240 SRYTLSRTTLELPGITPSSRVTFSP 264
           S  +  R  LEL   TP  R    P
Sbjct: 241 SPSSSFRPALELRQTTPPLRTESLP 265

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445554|ref|XP_004140537.1| PREDICTED: uncharacterized protein LOC101217504 [Cucumis sativus]

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 143/272 (52%), Positives = 186/272 (68%), Gaps = 9/272 (3%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MA+ FGK+T LVGAGI+ SVLAKEGRL  V D V G  KI  + I +DD   S  K  ND
Sbjct: 1   MAIPFGKITILVGAGIVGSVLAKEGRLPYVQDFVSGAFKIALRRISRDDSSTSKTKPRND 60

Query: 61  -LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
            L+A+V S+++EL  +  +  +   +  G G +KYGVI+++V VGYG +W KGWKLPDMM
Sbjct: 61  SLMAQVKSLREELQMLASNRQMTIVTTGGRGGRKYGVIILVVVVGYGIIWMKGWKLPDMM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FAT+RSL+DAC SVARQLE+VYSSI+A +R LSSK+ SVD+ +++ ++++  TQE+V+ L
Sbjct: 121 FATKRSLADACTSVARQLENVYSSIAATKRNLSSKMDSVDKSLDETLDVTTDTQEQVSEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239
           RGRS+  G + +SV   VQTLE+KL   EGKQD T  GVKKLC+ A +LEN R  E  QA
Sbjct: 181 RGRSETFGRDIKSVHHAVQTLENKLCTFEGKQDRTYEGVKKLCNYAIDLENKRTAERTQA 240

Query: 240 SRYTLSRTTLELPGITPSSR-------VTFSP 264
                SR  LELP  TPS +       + FSP
Sbjct: 241 IPSGPSRQVLELP-PTPSPKLQNRSLPIGFSP 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397746441|gb|AFO63288.1| bZIP9 [Tamarix hispida]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 178/267 (66%), Gaps = 5/267 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           M+L  GKL  LVGAGI+ SVLAKEGR+  VSD + G  +I  K +KQ D  PS  K  +D
Sbjct: 1   MSLPLGKLGILVGAGIVGSVLAKEGRMPGVSDILSGAFQIALKPLKQSDSSPSSSKPKSD 60

Query: 61  -LLAEVSSVQQELSHVP--RSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPD 117
            L+A+++S++QEL  +   RS+ I TS GS  G + YG+I+VIV  GYGY+WWKGWKLPD
Sbjct: 61  ALMAQINSLRQELQLLSGGRSITIVTS-GS-RGGRPYGIIIVIVVAGYGYIWWKGWKLPD 118

Query: 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177
           + FATRR LSDAC+++A+QLE VYSS+SA +R LS KI  VD  +N   E   +TQ+EVT
Sbjct: 119 LSFATRRGLSDACSAIAKQLEQVYSSLSATRRDLSRKIERVDCSLNDCTENIASTQQEVT 178

Query: 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELV 237
            L+G  K  GD FQSVR +V+ LES++  ++GK++ T + V KL + A+ LE       +
Sbjct: 179 ELQGEVKTFGDSFQSVRHVVKALESRVSRMQGKEEATHVKVMKLVNTAKSLEGSAQAGFL 238

Query: 238 QASRYTLSRTTLELPGITPSSRVTFSP 264
           Q S  + SR  LE P +T SSR    P
Sbjct: 239 QGSSTSASRPALEHPQMTTSSRAVSLP 265

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072554|ref|XP_002303779.1| predicted protein [Populus trichocarpa] gi|222841211|gb|EEE78758.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/248 (55%), Positives = 175/248 (70%), Gaps = 14/248 (5%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPG--------- 51
           MAL  GKLT LVGAGIL SVLAKEGRL  VS+ V G  KI  + +KQDD           
Sbjct: 1   MALPLGKLTILVGAGILGSVLAKEGRLPDVSNFVSGAFKIAFRQLKQDDSTSSVSKSSKP 60

Query: 52  PSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWK 111
           P+D      L+A+V+S++QEL  +  S  +   + +GTG+ KYGV++V+V VGYGYVWWK
Sbjct: 61  PND-----SLMAQVNSLRQELQMLASSRPVTIVTANGTGSNKYGVVIVVVVVGYGYVWWK 115

Query: 112 GWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171
           GWKLPDMMFATRRSLSDAC S+A+QLE+VY+SI + +R LSSKI  VD ++N + E++ +
Sbjct: 116 GWKLPDMMFATRRSLSDACTSIAQQLENVYASIRSTRRHLSSKIDGVDSNLNAVAELTAS 175

Query: 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231
           TQE+V  LR  S  IG++ + VRD V+TLE K+  IEGKQD+TT GVK+LCD A  LEN 
Sbjct: 176 TQEKVIELREDSSRIGNDVRYVRDAVETLELKISRIEGKQDLTTQGVKRLCDYASSLENN 235

Query: 232 RPTELVQA 239
              E +QA
Sbjct: 236 LLEENIQA 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578294|ref|XP_002530014.1| DNA binding protein, putative [Ricinus communis] gi|223530493|gb|EEF32376.1| DNA binding protein, putative [Ricinus communis]

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 158/242 (65%), Gaps = 2/242 (0%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT LVGAGIL SVLAKEGRL SVSD V G  KI  K IK  D   S +    D
Sbjct: 1   MALPLGKLTVLVGAGILGSVLAKEGRLPSVSDFVSGAFKIAFKQIKPQDSNSSSKSKPID 60

Query: 61  --LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDM 118
             L+A+V+S+QQEL  +  +  I   + SGTGA KYG IV+IV VGYGYVWWKGWKLPDM
Sbjct: 61  ASLIAQVNSLQQELQLLASNRPITIVTASGTGAGKYGTIVLIVVVGYGYVWWKGWKLPDM 120

Query: 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178
           MFATRRSLSDAC S+A+QLE+VY SI + +R+LSS I  +D  ++++  ++  T+E+V  
Sbjct: 121 MFATRRSLSDACTSIAQQLENVYGSIRSTRRELSSNIEHMDATLDQVAALTANTREKVAE 180

Query: 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238
           L   S    ++ ++V   VQ L  K+  IE KQ  T  GVKKL D    LEN    E  Q
Sbjct: 181 LLEDSARYDNDVRNVHQTVQMLGQKISRIEEKQSFTMHGVKKLVDFTYNLENNLLQENTQ 240

Query: 239 AS 240
           AS
Sbjct: 241 AS 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580725|ref|XP_002531184.1| DNA binding protein, putative [Ricinus communis] gi|223529225|gb|EEF31199.1| DNA binding protein, putative [Ricinus communis]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 120/215 (55%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLI-KQDDPGPSDRKLFN 59
           M+L  GKLT LVGAGIL SVLAKEGRLSSV D V G  KI  K I ++D    S+ K  N
Sbjct: 1   MSLPLGKLTILVGAGILGSVLAKEGRLSSVPDFVSGAFKIAFKQISREDSTSSSNGKPIN 60

Query: 60  -DLLAEVSSVQQELSHVP--RSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLP 116
             L+A+V+S++QEL  +   R V I T+SG+G GA KYG IV+IV VGYGYVWWKGWKLP
Sbjct: 61  ASLMAQVNSLRQELQLLASNRPVTIVTASGTGAGAGKYGTIVLIVVVGYGYVWWKGWKLP 120

Query: 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176
           DMMFATRRSLSDAC S+A+QLE+VY+SI + +R+LSS I  +D  +N++  ++  T+E+V
Sbjct: 121 DMMFATRRSLSDACTSIAQQLENVYASIRSTKRELSSNIEHLDSTLNEVAALTSNTREKV 180

Query: 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211
           T L   S     + ++VR  VQTL  K+  IE KQ
Sbjct: 181 TELLEDSSRFDQDVRNVRQTVQTLGMKISRIEEKQ 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851156|ref|XP_002893459.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297339301|gb|EFH69718.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/265 (45%), Positives = 168/265 (63%), Gaps = 3/265 (1%)

Query: 1   MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
           MAL  GKLT L+GAG++ S  A+EG L   S+ V G  K+V K +KQ++P  S  K  ND
Sbjct: 1   MALPLGKLTILIGAGLVGSAFAREGGLPDFSNLVSGAFKMVFKQLKQEEPSKSASKPHND 60

Query: 61  LL-AEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM 119
           +L A+V+S++ E+  +  +  I   S  G+G KKYG+I+++  +GYGYVWWKGWKLPD M
Sbjct: 61  VLVAQVNSLRHEIQLLGSNRPITIVSTPGSGGKKYGLIIIVGVIGYGYVWWKGWKLPDFM 120

Query: 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179
           FATRRSLSDAC+ V +Q++  YSS+S  +++L S++  V R ++   E+ + T  EVT L
Sbjct: 121 FATRRSLSDACDDVGKQIDGFYSSLSGTKQELGSQVDRVGRRLDANTEVIEQTGREVTEL 180

Query: 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239
           +  + +I D+ +SV   V+TL +K+  IEG QDIT  GV  L  + R  EN R  E  +A
Sbjct: 181 QDGTAIIKDDVKSVFAAVETLANKVYRIEGNQDITLRGVGALHAQCR--ENKRIQESNKA 238

Query: 240 SRYTLSRTTLELPGITPSSRVTFSP 264
              T S   LE   +TPSSR   SP
Sbjct: 239 LPSTSSVPALEAAPMTPSSRTLSSP 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:1005716745	344	AT1G24267 "AT1G24267" [Arabido	0.938	0.755	0.447	1.6e-45
TAIR|locus:2010602	334	AT1G04960 "AT1G04960" [Arabido	0.797	0.661	0.254	3.5e-20
TAIR|locus:2205734	304	AT1G27000 "AT1G27000" [Arabido	0.747	0.680	0.240	2.5e-17
TAIR|locus:2058832	276	AT2G02730 "AT2G02730" [Arabido	0.844	0.847	0.225	7.7e-16

TAIR|locus:1005716745 AT1G24267 "AT1G24267" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 120/268 (44%), Positives = 159/268 (59%)

Query:     1 MALTFGKLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND 60
             MA+  GKLT L+GAG++ SVLAKEG L  VS  V G LK+V + +KQ++P  S  K  ND
Sbjct:     1 MAIPLGKLTILIGAGLVGSVLAKEGSLPDVSSFVSGALKMVFRQLKQEEPAKSASKPRND 60

Query:    61 -LLAEVSSVQQELSHVP--RSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPD 117
              L+A+V+S++ ELS +   R + I T++GSG                    WWKGWKLPD
Sbjct:    61 TLMAQVNSLRHELSLLSSNRPITIVTTAGSG--GKKYGYIIIIGVIGYGYVWWKGWKLPD 118

Query:   118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177
             +MFATRRSLSDACNSV  Q++  Y+S+S  +++LSSKI  + R ++   EI Q T  EV 
Sbjct:   119 LMFATRRSLSDACNSVGSQIDGFYTSLSGTKKELSSKIDGMGRSLDANTEIIQDTGREVM 178

Query:   178 ILRGRSKLIGDEFQSVRDIVQTLESKLI-EIEGKQDITTLGVKKLCDRARELENGRPTEL 236
              L+  ++ I D+ + V D V+ L  KLI  IEG QDIT  GV  L  + RE  N R  E 
Sbjct:   179 ELQRGTENIKDDVKFVFDAVENLVRKLIYRIEGNQDITLKGVGALHAQVRE--NKRIQES 236

Query:   237 VQASRYTLSRTTLELPGITPSSRVTFSP 264
              +A   T +   LE   +TPSSR    P
Sbjct:   237 NKALPSTSAVPALEAAPMTPSSRTLSLP 264

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

TAIR|locus:2010602 AT1G04960 "AT1G04960" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 57/224 (25%), Positives = 110/224 (49%)

Query:    15 GILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSH 74
             G+  S++ + GRLS +   +   L     +  +  P   D  L    + ++++  +EL+ 
Sbjct:    36 GVSGSIVLRHGRLSDLIAQLQDLLNGAQGV--ESTPFKYDGALLAAQIRQLANEIKELTM 93

Query:    75 VPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDACNSVA 134
                  I    S S                     WWKGW   D MF T+++++DA  SV+
Sbjct:    94 TNPVTIFNGDSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADAVASVS 153

Query:   135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194
             +QL+D+  ++++ ++ LS K+ ++D  V +  E S+    +VT +R     IG +F+ + 
Sbjct:   154 KQLDDLSDTLASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFDFKQLN 213

Query:   195 DIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238
             +++  +E K+  +E KQD+T  G+  LC  A  +++   T++ Q
Sbjct:   214 EMISGIEGKIESLESKQDVTLSGLWHLCQVAG-VKDSTSTKVFQ 256

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205734 AT1G27000 "AT1G27000" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 51/212 (24%), Positives = 102/212 (48%)

Query:     7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVS 66
             ++  L GAG   +++ K G+LS   D +G    +V  + K  +    D  + + + A+V 
Sbjct:    11 RIFLLAGAGYTGTIMMKNGKLS---DLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVR 67

Query:    67 SVQQELSHVPRSVIIETSSG-SGTXXXXXXX-XXXXXXXXXXXXWWKGWKLPDMMFATRR 124
              +  E+  +     I   +G SG                     WWKG    D+M+ T+ 
Sbjct:    68 RLAMEIRQLASQQHITVMNGVSGANLQALAVPAAALGALGYGYMWWKGLSFTDLMYVTKA 127

Query:   125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184
             +++ A  ++ + LE V  +++AA+R L+ +I ++D  V K +++S+    +V   R    
Sbjct:   128 NMAAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKVEKQIDLSKEINSQVISARENIS 187

Query:   185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216
              +  + +S+ +++  L+ KL  +E KQD+T +
Sbjct:   188 SLEMDLESLHNLITGLDGKLDTLEYKQDVTNV 219

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058832 AT2G02730 "AT2G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 54/239 (22%), Positives = 108/239 (45%)

Query:     7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVS 66
             K+  L GAG  +++L K G+++   D +G    +V +  K  D    D       +  ++
Sbjct:    11 KILILAGAGYTSTILVKNGKMA---DILGELQALVKRFEKSGDHVDDDSDAMTTQMQRLA 67

Query:    67 SVQQELSHVPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSL 126
                ++L+   R + +   +                       W+KG    D+M  T+R++
Sbjct:    68 MEVRQLAS-SRQITVMNGAQGADFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNM 126

Query:   127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186
              +A +++ + L+ V  +I  A++ LS ++  VD  ++   ++ +  Q+ V +       I
Sbjct:   127 ENAVSNLTKHLDTVSEAILNAKKHLSQRLQKVDDKLDLQKDLLKGVQDNVGLALEDLANI 186

Query:   187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS 245
             GD+F ++  I   +  KL  IE KQ+I  +G+  LCD     EN +  +++   +  LS
Sbjct:   187 GDDFDAMHSIFGGMGGKLDSIEYKQNIANMGLIYLCDSLGG-ENHKMPDILMQEKLRLS 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       258   0.00087  114 3  11 23  0.50    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.16u 0.08s 26.24t   Elapsed:  00:00:02
  Total cpu time:  26.16u 0.08s 26.24t   Elapsed:  00:00:02
  Start:  Tue May 21 00:26:20 2013   End:  Tue May 21 00:26:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002774001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam07889	125	pfam07889, DUF1664, Protein of unknown function (D	4e-47

>gnl|CDD|203795 pfam07889, DUF1664, Protein of unknown function (DUF1664)

 Score =  153 bits (388), Expect = 4e-47
 Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 3/126 (2%)

Query: 88  GTGAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS 145
           G+G +KY ++    + A+GYGY+WWKGW   D+MF T+R++SDA  SV +QLE V  SI+
Sbjct: 1   GSG-RKYLIVPAAALGALGYGYMWWKGWSFSDLMFVTKRNMSDAVASVGKQLEKVSESIA 59

Query: 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205
           AA++ LS +I ++D  +++  EIS++T++EVT +R     IG++ +SV   V+ LE KL 
Sbjct: 60  AAKKHLSQRIDNLDDKLDEQKEISESTRDEVTEIREDLSNIGEDVKSVHQAVEGLEGKLD 119

Query: 206 EIEGKQ 211
            IE KQ
Sbjct: 120 SIEYKQ 125

The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	100.0
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	97.9
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	97.22
PF04375	372	HemX: HemX; InterPro: IPR007470 The majority of pr	95.95
PRK10884	206	SH3 domain-containing protein; Provisional	95.22
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	95.08
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	94.41
PRK14011	144	prefoldin subunit alpha; Provisional	94.16
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	93.9
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	93.08
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.93
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.81
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	92.8
PHA02562	562	46 endonuclease subunit; Provisional	92.58
PRK11637	428	AmiB activator; Provisional	92.4
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.2
PRK11637	428	AmiB activator; Provisional	92.02
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	91.87
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	91.26
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.02
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	90.64
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	89.68
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.67
PRK03947	140	prefoldin subunit alpha; Reviewed	89.58
PF10158	131	LOH1CR12: Tumour suppressor protein; InterPro: IPR	89.28
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	88.85
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	88.74
PRK10920	390	putative uroporphyrinogen III C-methyltransferase;	88.69
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	88.61
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	88.57
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	88.4
KOG2629	300	consensus Peroxisomal membrane anchor protein (per	88.39
PRK11166	214	chemotaxis regulator CheZ; Provisional	87.67
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	86.99
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.92
PF10241	88	KxDL: Uncharacterized conserved protein; InterPro:	86.53
PF04513	140	Baculo_PEP_C: Baculovirus polyhedron envelope prot	86.21
PHA02562	562	46 endonuclease subunit; Provisional	86.15
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	86.11
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	85.65
PRK10884	206	SH3 domain-containing protein; Provisional	85.44
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	85.16
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	85.07
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	84.94
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	84.67
PRK09039	343	hypothetical protein; Validated	84.65
PRK04778	569	septation ring formation regulator EzrA; Provision	84.58
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	84.48
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.25
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	83.18
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	82.79
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.44
PF10828	110	DUF2570: Protein of unknown function (DUF2570); In	81.29
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	80.83
PRK10803	263	tol-pal system protein YbgF; Provisional	80.83
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	80.65
PF08700	87	Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te	80.33
PRK04778	569	septation ring formation regulator EzrA; Provision	80.26
PF09403	126	FadA: Adhesion protein FadA; InterPro: IPR018543 F	80.26
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	80.19

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=100.00  E-value=2.8e-56  Score=372.21  Aligned_cols=115  Identities=49%  Similarity=0.811  Sum_probs=113.6

Q ss_pred             hHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768           97 IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV  176 (277)
Q Consensus        97 iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV  176 (277)
                      ++++||+|||||||||||||||||||||||+|||++|+|||+|||++|++|||||+||||+||+|||+|.|++++|++||
T Consensus        12 aa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV   91 (126)
T PF07889_consen   12 AAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV   91 (126)
T ss_pred             HHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768          177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  211 (277)
Q Consensus       177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ  211 (277)
                      +++++|+++|++|++.||.+|++||+||++||+||
T Consensus        92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q  126 (126)
T PF07889_consen   92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ  126 (126)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999998

The region featured in this family is approximately 100 amino acids long.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=97.90  E-value=3.9e-05  Score=64.89  Aligned_cols=94  Identities=10%  Similarity=0.188  Sum_probs=85.9

Q ss_pred             eEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768          107 YVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI  186 (277)
Q Consensus       107 YmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i  186 (277)
                      .||=-..+++|.|-.--++|.+..++++..-+|++.+|....++|.+..+......|+    ...++++++.++.|+..+
T Consensus        33 ~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~e----V~~v~~dv~~i~~dv~~v  108 (126)
T PF07889_consen   33 LMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDE----VTEVREDVSQIGDDVDSV  108 (126)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHH
Confidence            3666788999999999999999999999999999999999999998888888877777    467799999999999999


Q ss_pred             hhHHHHHHHHHHhHHHHH
Q 023768          187 GDEFQSVRDIVQTLESKL  204 (277)
Q Consensus       187 ~~dv~~v~~~V~~Le~Ki  204 (277)
                      +..|..++.++..||+|+
T Consensus       109 ~~~V~~Le~ki~~ie~~Q  126 (126)
T PF07889_consen  109 QQMVEGLEGKIDEIEEKQ  126 (126)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999999874

The region featured in this family is approximately 100 amino acids long.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=97.22  E-value=0.0011  Score=54.09  Aligned_cols=87  Identities=17%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             hhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-
Q 023768           94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-  172 (277)
Q Consensus        94 ~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~i-  172 (277)
                      ++.|.++.+++|++.||+   ++- =||+|..+..                      |.+|++..|.++++...-.+.+ 
T Consensus         9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP   62 (106)
T PF10805_consen    9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP   62 (106)
T ss_pred             cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence            555666677788888886   222 3566554433                      2233333333333322222223 


Q ss_pred             -HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768          173 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE  206 (277)
Q Consensus       173 -q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~  206 (277)
                       ++|+..++..+++++++++.+...+++++-.++.
T Consensus        63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l   97 (106)
T PF10805_consen   63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDL   97 (106)
T ss_pred             CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence             4555555555555555555555555555544443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2

Probab=95.95  E-value=0.042  Score=53.33  Aligned_cols=11  Identities=36%  Similarity=0.845  Sum_probs=8.0

Q ss_pred             hhhhheeeEEe
Q 023768          100 IVAVGYGYVWW  110 (277)
Q Consensus       100 iGavGYgYmwW  110 (277)
                      +.++|+||.||
T Consensus        40 ~~alg~~~~~~   50 (372)
T PF04375_consen   40 ALALGAGGWYW   50 (372)
T ss_pred             HHHHHHHHHHH
Confidence            36778888777

1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.22  E-value=0.63  Score=42.32  Aligned_cols=98  Identities=13%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             heeeEEe----cccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768          104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL  179 (277)
Q Consensus       104 GYgYmwW----KG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i  179 (277)
                      ||.++.-    .|| +.+=+-.....+..-+..+.++++++.+.|+.++..+.+|-+.+..++++....+..++++-.++
T Consensus        66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L  144 (206)
T PRK10884         66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL  144 (206)
T ss_pred             CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888873    378 55555666778899999999999999999999999999999999888888665555555555444


Q ss_pred             hhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768          180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEG  209 (277)
Q Consensus       180 ~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~  209 (277)
                             ...+..++..+..|+.+++.+..
T Consensus       145 -------~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        145 -------KNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                   55555566666666666665544

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=95.08  E-value=0.8  Score=45.65  Aligned_cols=30  Identities=23%  Similarity=0.175  Sum_probs=24.0

Q ss_pred             hhhcccccccccccCCCCCCCCccccCCcc
Q 023768          237 VQASRYTLSRTTLELPGITPSSRVTFSPIL  266 (277)
Q Consensus       237 ~q~~~s~ssrpalE~p~~tpssr~~s~pp~  266 (277)
                      .+..+-.|+||+=|+||--|--|..--.|.
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (553)
T PRK15048        520 LTNKPQTPSRPASEQPPAQPRLRIAEQDPN  549 (553)
T ss_pred             ccccccccccccccCCccCccCCcCCCCCC
Confidence            455667789999999999998888776664

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=94.41  E-value=0.38  Score=39.69  Aligned_cols=82  Identities=17%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768          119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ  198 (277)
Q Consensus       119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~  198 (277)
                      =|||++.+...=.+--.-|..+-..+...  -...+|+.+..+.+.|-|-++..+.++.       ..+.-++.|-....
T Consensus        21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~   91 (102)
T PF01519_consen   21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQ   91 (102)
T ss_dssp             TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            38999999866544444455555544432  3344444444555555444444444443       44555666777777


Q ss_pred             hHHHHHHHHhh
Q 023768          199 TLESKLIEIEG  209 (277)
Q Consensus       199 ~Le~Ki~~ie~  209 (277)
                      .+..+++.||.
T Consensus        92 ~inkRLD~~E~  102 (102)
T PF01519_consen   92 SINKRLDKMES  102 (102)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHhhccC
Confidence            77788888763

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=94.16  E-value=0.32  Score=42.03  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=45.5

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      ++..||.||.-=|                               .+..|+++|..||+.++.++++..+..+.+.+++.+
T Consensus        72 VlVdIGtGy~VEk-------------------------------~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~  120 (144)
T PRK14011         72 AILGVGSDIYLEK-------------------------------DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK  120 (144)
T ss_pred             EEEEccCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999998655                               567889999999999999999998888888888877


Q ss_pred             hhhc
Q 023768          179 LRGR  182 (277)
Q Consensus       179 i~~d  182 (277)
                      ++..
T Consensus       121 l~~~  124 (144)
T PRK14011        121 LRKE  124 (144)
T ss_pred             HHHH
Confidence            7765

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=93.90  E-value=2.8  Score=36.66  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=52.7

Q ss_pred             HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh--------hhh
Q 023768          120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK--------LIG  187 (277)
Q Consensus       120 ~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkh----LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~--------~i~  187 (277)
                      +|||..+.+..-.....+.++-..+...+|+    |....+.+...+|+   +-..+++|+..++.++.        +++
T Consensus        43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~---l~~~L~~ei~~l~a~~klD~n~eK~~~r  119 (177)
T PF07798_consen   43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEK---LRQELREEINKLRAEVKLDLNLEKGRIR  119 (177)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6889988887777777777777777665554    33444444444444   34455556655555443        466


Q ss_pred             hHHHHHHHHHHhHHHHHH
Q 023768          188 DEFQSVRDIVQTLESKLI  205 (277)
Q Consensus       188 ~dv~~v~~~V~~Le~Ki~  205 (277)
                      ++....+..+..++.||+
T Consensus       120 ~e~~~~~~ki~e~~~ki~  137 (177)
T PF07798_consen  120 EEQAKQELKIQELNNKID  137 (177)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666677766766666665

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=93.08  E-value=0.49  Score=38.61  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=45.8

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      ++.-+|.|||=.+                               .+..|+++|..|++.++..+++..+.....+++++.
T Consensus        70 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~  118 (126)
T TIGR00293        70 VLVSIGSGYYVEK-------------------------------DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ  118 (126)
T ss_pred             EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999988                               458899999999999999999988888888888877


Q ss_pred             hhhch
Q 023768          179 LRGRS  183 (277)
Q Consensus       179 i~~dv  183 (277)
                      +...+
T Consensus       119 i~~~l  123 (126)
T TIGR00293       119 LEQEA  123 (126)
T ss_pred             HHHHH
Confidence            66543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.93  E-value=2.6  Score=38.49  Aligned_cols=93  Identities=15%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768          134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI  213 (277)
Q Consensus       134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~  213 (277)
                      -+++.++......+..+..+||+..++.-++..+-.++.++++..++.-.++...-+.+.+..+..|+.+++.++.....
T Consensus        23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~  102 (251)
T PF11932_consen   23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE  102 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666677788889999999999999998888888899999888888889999999999999999999988876555


Q ss_pred             HhHHH----HHHHHHHH
Q 023768          214 TTLGV----KKLCDRAR  226 (277)
Q Consensus       214 tn~GV----~~Lc~~~~  226 (277)
                      ..--+    ..|-+|++
T Consensus       103 l~p~m~~m~~~L~~~v~  119 (251)
T PF11932_consen  103 LVPLMEQMIDELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44433    44555554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.81  E-value=4.7  Score=37.36  Aligned_cols=64  Identities=14%  Similarity=0.098  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768          162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA  225 (277)
Q Consensus       162 lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~  225 (277)
                      |.|...-...+..|=...-+.+.+|+.|+..++..|...+.--......-...-.-+.-|=+.|
T Consensus        34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i   97 (230)
T PF10146_consen   34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI   97 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444555556677777777777777766555544444444444333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=92.80  E-value=0.15  Score=49.45  Aligned_cols=87  Identities=17%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768          125 SLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE  201 (277)
Q Consensus       125 ~m~~Av~sv~kqLeqVs~sL~~tKk---hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le  201 (277)
                      +|+.++.++...|..++..|...+-   +|+..|..+...+.+....+-.++..|..+..|+.+.+.||-..-..|..||
T Consensus        67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe  146 (326)
T PF04582_consen   67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE  146 (326)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence            4445555555555555555544443   3455566666666666666777778888888888888888888888888888


Q ss_pred             HHHHHHhhhh
Q 023768          202 SKLIEIEGKQ  211 (277)
Q Consensus       202 ~Ki~~ie~kQ  211 (277)
                      .|+..+|...
T Consensus       147 ~RV~~LEs~~  156 (326)
T PF04582_consen  147 SRVKALESGS  156 (326)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHhcCC
Confidence            8888777653

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.58  E-value=1.5  Score=43.52  Aligned_cols=84  Identities=12%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768          134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI  213 (277)
Q Consensus       134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~  213 (277)
                      ..+++++...+...++.+...++.+...+++...-...++.++..++..+.+++.+++.+...+..++.++..++.+.+.
T Consensus       194 ~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~  273 (562)
T PHA02562        194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ  273 (562)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555666666777777888888888888888888888888888888888777777777777766665544


Q ss_pred             HhHH
Q 023768          214 TTLG  217 (277)
Q Consensus       214 tn~G  217 (277)
                      ....
T Consensus       274 ~~~~  277 (562)
T PHA02562        274 FQKV  277 (562)
T ss_pred             HHHH
Confidence            4433

>PRK11637 AmiB activator; Provisional

Probab=92.40  E-value=1.9  Score=42.28  Aligned_cols=80  Identities=11%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhhhHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768          126 LSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES  202 (277)
Q Consensus       126 m~~Av~sv~kqLeqVs~sL~---~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~  202 (277)
                      ..+=...+-+++++....|.   .-++++.+.|+.++.++++..+-+..++.++.++..+++....+|...+..+...+.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444   333445566666666666666666666666666666666666666666666666555


Q ss_pred             HHH
Q 023768          203 KLI  205 (277)
Q Consensus       203 Ki~  205 (277)
                      .+.
T Consensus       125 ~l~  127 (428)
T PRK11637        125 LLA  127 (428)
T ss_pred             HHH
Confidence            554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.20  E-value=6.4  Score=36.49  Aligned_cols=90  Identities=24%  Similarity=0.297  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhhhh-HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768          126 LSDACNSVARQLED-VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  204 (277)
Q Consensus       126 m~~Av~sv~kqLeq-Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki  204 (277)
                      |++|...|-.+-+. +...-..+......+++.+........+-....+.++.+++..+.....++..++.....||..|
T Consensus       167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l  246 (312)
T PF00038_consen  167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence            88888888888774 44555688889999999999999888888999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHh
Q 023768          205 IEIEGKQDITT  215 (277)
Q Consensus       205 ~~ie~kQd~tn  215 (277)
                      ..++.......
T Consensus       247 ~~le~~~~~~~  257 (312)
T PF00038_consen  247 RELEQRLDEER  257 (312)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88876544433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=92.02  E-value=1.8  Score=42.44  Aligned_cols=77  Identities=12%  Similarity=0.173  Sum_probs=40.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768          131 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  207 (277)
Q Consensus       131 ~sv~kqLeqVs~sL~~tKkhLs---qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i  207 (277)
                      +.+-++|+++-..|...++.+.   .++..+..++++...=...+++++.+++.+++.+..++..++..+..++.++...
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666555   4444444444444444444444555555555555555555555444444444433

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=91.87  E-value=2.4  Score=33.81  Aligned_cols=81  Identities=12%  Similarity=0.168  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHH
Q 023768          141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK  220 (277)
Q Consensus       141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~  220 (277)
                      ..+|.++-++|.+.|++|+..++.-.+.....    .++..++..++.|-..+.+.+...+.+...++..|.-.-..+..
T Consensus         3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~   78 (89)
T PF13747_consen    3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS   78 (89)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666666666665543332222    44445555556666666666666666666666655555555555


Q ss_pred             HHHHH
Q 023768          221 LCDRA  225 (277)
Q Consensus       221 Lc~~~  225 (277)
                      ..+-|
T Consensus        79 a~e~I   83 (89)
T PF13747_consen   79 AIETI   83 (89)
T ss_pred             HHHHH
Confidence            44444

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=91.26  E-value=1.4  Score=35.82  Aligned_cols=65  Identities=11%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768          152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD  223 (277)
Q Consensus       152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i--~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~  223 (277)
                      ..+++.+++++++       ..+.++.+...+.+.  ++|++.++..+..++|++..+++.-+..++-+.+|-+
T Consensus        34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE  100 (106)
T PF10805_consen   34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE  100 (106)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555544       477788889999998  9999999999999999999999999888888888865

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.02  E-value=4.4  Score=34.69  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=47.4

Q ss_pred             HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768          150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  211 (277)
Q Consensus       150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ  211 (277)
                      .|+.||+-|...+|+...--+.+...+.++.....++..-|..+..--..+|.|++.++.+-
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            36678888888888877777777777777777777777778888877777888887777654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=90.64  E-value=9.7  Score=32.41  Aligned_cols=15  Identities=7%  Similarity=0.337  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhcC
Q 023768           61 LLAEVSSVQQELSHV   75 (277)
Q Consensus        61 l~aQV~~L~~El~~L   75 (277)
                      +...++.++++.+.|
T Consensus        45 ~~~~i~~ia~qt~lL   59 (213)
T PF00015_consen   45 ILSLINEIAEQTNLL   59 (213)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHh
Confidence            777788888888877

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=89.68  E-value=2  Score=35.13  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      ++.-+|.||+=.+                               ++..|++.+..||+.++..+++..+....++++++.
T Consensus        71 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~  119 (129)
T cd00584          71 VLVDLGTGYYVEK-------------------------------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT  119 (129)
T ss_pred             EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778899999877                               456777888888888888888877777777777766


Q ss_pred             hhhchh
Q 023768          179 LRGRSK  184 (277)
Q Consensus       179 i~~dv~  184 (277)
                      +...+.
T Consensus       120 ~~~~l~  125 (129)
T cd00584         120 LEAELQ  125 (129)
T ss_pred             HHHHHH
Confidence            665543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.67  E-value=4.5  Score=38.44  Aligned_cols=68  Identities=15%  Similarity=0.275  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768          138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (277)
Q Consensus       138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~  205 (277)
                      |.-...+...++.+...|+.+|.++++...=+...++++++.+.++..+..+|+.++.-|..-...+.
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~  104 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK  104 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666777888888888888888877777777777777777777777777777666655554444

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=89.58  E-value=2.2  Score=35.51  Aligned_cols=52  Identities=25%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      |+.-+|+||+=.+-                               +..|.+.|..|++.++..+++..+....+++++..
T Consensus        78 V~v~lG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~  126 (140)
T PRK03947         78 VIVSLGAGYSAEKD-------------------------------LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ  126 (140)
T ss_pred             EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67789999999883                               46777777777777777776665555555554444


Q ss_pred             hhh
Q 023768          179 LRG  181 (277)
Q Consensus       179 i~~  181 (277)
                      +..
T Consensus       127 ~~~  129 (140)
T PRK03947        127 LAQ  129 (140)
T ss_pred             HHH
Confidence            433

>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []

Probab=89.28  E-value=9.6  Score=32.51  Aligned_cols=51  Identities=20%  Similarity=0.399  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 023768          124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE  174 (277)
Q Consensus       124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~  174 (277)
                      |.+-+.|.....||.+-.+.|+.-..+|.+||-.+|..+....+...+-|+
T Consensus        27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk   77 (131)
T PF10158_consen   27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQK   77 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889999999999999999999999999999999998776444444343

The exact function of these proteins is not known.

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=88.85  E-value=3.7  Score=35.09  Aligned_cols=59  Identities=8%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768          142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIEGK  210 (277)
Q Consensus       142 ~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~-i~~dv~~v~~~V~~Le~Ki~~ie~k  210 (277)
                      .....++.+.....++++...|+          .|..+-..+.- .+.||+.|+..|..|+.++..+..+
T Consensus        72 ~~~~~~~~~~~~~~dklE~~fd~----------rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~~  131 (132)
T PF05597_consen   72 SRVDDVKERATGQWDKLEQAFDE----------RVARALNRLGVPSRKDVEALSARIDQLTAQVERLANK  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45555555555555555554444          23333222221 3689999999999999998887764

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=88.74  E-value=6.1  Score=30.57  Aligned_cols=31  Identities=16%  Similarity=0.325  Sum_probs=12.8

Q ss_pred             HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768          134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNK  164 (277)
Q Consensus       134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde  164 (277)
                      ++-++++...+....+++..-...+++.+.+
T Consensus        25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~   55 (90)
T PF06103_consen   25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHN   55 (90)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3444444444444444443333333344444

>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional

Probab=88.69  E-value=2  Score=42.65  Aligned_cols=62  Identities=13%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             CCcchhhh--HHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 023768           90 GAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD  159 (277)
Q Consensus        90 g~~~~~~i--v~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD  159 (277)
                      +|...+++  +++-++|+||-|| |.       --.......-..+..+|+.+.......+..|.+.+..++
T Consensus        35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~   98 (390)
T PRK10920         35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQA   98 (390)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444543  2345777777666 22       112223444455555555554444444444444444333

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=88.61  E-value=4.6  Score=31.27  Aligned_cols=45  Identities=4%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768          120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK  164 (277)
Q Consensus       120 ~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde  164 (277)
                      +.+-+++......+.+.++++.+.+....++..+-+.++..-+++
T Consensus        18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~d   62 (90)
T PF06103_consen   18 IKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLED   62 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555554444444444444

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=88.57  E-value=9  Score=29.59  Aligned_cols=73  Identities=12%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             HhhhhHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768          135 RQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE  208 (277)
Q Consensus       135 kqLeqVs~sL~---~tKkhLsqRId~vD~klde~~ei~~~i--q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie  208 (277)
                      -.|+.+.+.|.   .....|.++|+.+..+++++.++....  -+.+. -...+.+|+..|..++..+..|..|+..++
T Consensus        14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~   91 (92)
T PF14712_consen   14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ   91 (92)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444444444   456789999999999998887755544  22333 777788899999999999999999888664

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=88.40  E-value=1.3  Score=35.39  Aligned_cols=53  Identities=23%  Similarity=0.334  Sum_probs=38.8

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      ++.-+|.||+=++                               ++..|.+.|..|++.+..++++..+-.+.+++++..
T Consensus        61 vlV~lG~~~~vE~-------------------------------s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~  109 (120)
T PF02996_consen   61 VLVSLGAGYYVEM-------------------------------SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ  109 (120)
T ss_dssp             EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778999999988                               457788888888888888887776655555555544


Q ss_pred             hhhc
Q 023768          179 LRGR  182 (277)
Q Consensus       179 i~~d  182 (277)
                      +...
T Consensus       110 ~~~~  113 (120)
T PF02996_consen  110 LEQT  113 (120)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.39  E-value=1.2  Score=42.86  Aligned_cols=32  Identities=19%  Similarity=0.481  Sum_probs=18.4

Q ss_pred             chhh-hHHhhhhhe-eeEEecccCCCchHHHhhhh
Q 023768           93 KYGV-IVVIVAVGY-GYVWWKGWKLPDMMFATRRS  125 (277)
Q Consensus        93 ~~~~-iv~iGavGY-gYmwWKG~s~SDlM~VTkr~  125 (277)
                      .|+. .++.+++-| +|-.||-| +-=+||.-.++
T Consensus        85 dy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~~  118 (300)
T KOG2629|consen   85 DYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESKD  118 (300)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccch
Confidence            4443 234455666 47889999 44455555544

>PRK11166 chemotaxis regulator CheZ; Provisional

Probab=87.67  E-value=9.7  Score=35.13  Aligned_cols=108  Identities=20%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhHhhhhhh-------HHHHHHHHHHHHHHHHHhhhchhhhhhH---HH
Q 023768          124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRD-------VNKIVEISQATQEEVTILRGRSKLIGDE---FQ  191 (277)
Q Consensus       124 r~m~~Av~sv~--kqLeqVs~sL~~tKkhLsqRId~vD~k-------lde~~ei~~~iq~eV~~i~~dv~~i~~d---v~  191 (277)
                      |.|-+|...++  +.|++..+.|-.|+..|+--|+....-       .|.+..++..+.++...+.....++...   ..
T Consensus        26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~  105 (214)
T PRK11166         26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA  105 (214)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            56777777664  677788888888888887766655433       2333333333444444444432221110   22


Q ss_pred             HHHHHHHh--------------HHHHHHH---HhhhhHHHhHHHHHHHHHHHhhcCC
Q 023768          192 SVRDIVQT--------------LESKLIE---IEGKQDITTLGVKKLCDRARELENG  231 (277)
Q Consensus       192 ~v~~~V~~--------------Le~Ki~~---ie~kQd~tn~GV~~Lc~~~~~~~~~  231 (277)
                      .++..+..              +...+-+   -..-||.|-+=|....+-++.+|..
T Consensus       106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~  162 (214)
T PRK11166        106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQ  162 (214)
T ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHH
Confidence            22222222              2223322   3447888888887777777666544

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=86.99  E-value=2.3  Score=33.01  Aligned_cols=78  Identities=15%  Similarity=0.320  Sum_probs=43.7

Q ss_pred             HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768          119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ  198 (277)
Q Consensus       119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~  198 (277)
                      |+-+++-+.+...-++..+......-...++++.++++..=.+||=+      +++|....+.=       +...+..+.
T Consensus         1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~-------L~~~r~kl~   67 (79)
T PF04380_consen    1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAV-------LARTREKLE   67 (79)
T ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHH-------HHHHHHHHH
Confidence            34445566666666666666666666667777777777766666553      33343333333       334444555


Q ss_pred             hHHHHHHHHhh
Q 023768          199 TLESKLIEIEG  209 (277)
Q Consensus       199 ~Le~Ki~~ie~  209 (277)
                      .||.|+..+|.
T Consensus        68 ~LEarl~~LE~   78 (79)
T PF04380_consen   68 ALEARLAALEA   78 (79)
T ss_pred             HHHHHHHHHhc
Confidence            55555555543

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.92  E-value=9.7  Score=37.45  Aligned_cols=78  Identities=14%  Similarity=0.270  Sum_probs=45.1

Q ss_pred             chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768          117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  194 (277)
Q Consensus       117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~  194 (277)
                      |=|=-=+.+++++...+..+|+.++..|..+-..+..|-..+-..++...+-=+..+++++++++...+...-|....
T Consensus       223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t  300 (359)
T PF10498_consen  223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT  300 (359)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            345555566666666666666666666666666666666666666555555555555555555555444444444444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins

Probab=86.53  E-value=10  Score=29.84  Aligned_cols=62  Identities=10%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768          138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE  206 (277)
Q Consensus       138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~  206 (277)
                      .+.+..|+++-+.|....+-...++.+       ++.+..+=-..+..+..|++.++..|+.|..|+..
T Consensus        21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~-------~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~   82 (88)
T PF10241_consen   21 AQTLGRLNKTNEELLNLNDLSQQRLAE-------ARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK   82 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555444       34455555566677888999999999999988863

There is a characteristic KxDL motif towards the C terminus. The function is unknown.

>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx

Probab=86.21  E-value=13  Score=32.26  Aligned_cols=81  Identities=12%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768          125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  203 (277)
Q Consensus       125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~-~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K  203 (277)
                      .++..++.+..+|..+.+.|...-..++.|++.+-..+++. ..+++.++.|.+.+..++...-..|-.+......|-..
T Consensus        35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a  114 (140)
T PF04513_consen   35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA  114 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            46677777778888888888877777777766666665543 23445556666666666655555555555544444444


Q ss_pred             HH
Q 023768          204 LI  205 (277)
Q Consensus       204 i~  205 (277)
                      +.
T Consensus       115 ln  116 (140)
T PF04513_consen  115 LN  116 (140)
T ss_pred             HH
Confidence            43

The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope

>PHA02562 46 endonuclease subunit; Provisional

Probab=86.15  E-value=13  Score=37.04  Aligned_cols=33  Identities=9%  Similarity=0.165  Sum_probs=14.3

Q ss_pred             HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768          173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (277)
Q Consensus       173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~  205 (277)
                      ++++..+......+..++..++..+..++.++.
T Consensus       350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~  382 (562)
T PHA02562        350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELA  382 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence            333434444444444444444444444444443

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=86.11  E-value=4.8  Score=42.22  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 023768          135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG  181 (277)
Q Consensus       135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~  181 (277)
                      ..+.+.......+.+.+++|++.++.++.+...-+.+++..+.++.+
T Consensus       367 ~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~  413 (656)
T PRK06975        367 AELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR  413 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344444455566778888888888777766666666666555543

>smart00806 AIP3 Actin interacting protein 3

Probab=85.65  E-value=24  Score=35.75  Aligned_cols=98  Identities=16%  Similarity=0.320  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhhhhHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------Hhhh
Q 023768          126 LSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRG  181 (277)
Q Consensus       126 m~~Av~sv~kqLeqVs~s------------L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~------------~i~~  181 (277)
                      +..-+++|..++.+|.+.            +..-|++|+..-|+|-.+.|+.+.+++.+|+||-            .+..
T Consensus       178 ~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~k  257 (426)
T smart00806      178 IKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQK  257 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            344445555555555443            6677999999999999999999999999999874            3444


Q ss_pred             chhhhhhHHHHHHHHHH--------hHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768          182 RSKLIGDEFQSVRDIVQ--------TLESKLIEIEGKQDITTLGVKKLCD  223 (277)
Q Consensus       182 dv~~i~~dv~~v~~~V~--------~Le~Ki~~ie~kQd~tn~GV~~Lc~  223 (277)
                      |++....+++.++.-+.        .+|.-++.+.+-|+|.+.=-.++..
T Consensus       258 di~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D  307 (426)
T smart00806      258 ELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD  307 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555443        3667888888899888765544333

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.44  E-value=11  Score=34.32  Aligned_cols=60  Identities=12%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768          125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK  184 (277)
Q Consensus       125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~  184 (277)
                      .|++-++.+..+|.++-......+..+.++++..+....+.++=-++.++++..++..+.
T Consensus        97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~  156 (206)
T PRK10884         97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD  156 (206)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555666666666666666666666666666666665555555566666655554433

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=85.16  E-value=3.8  Score=32.37  Aligned_cols=29  Identities=24%  Similarity=0.444  Sum_probs=15.1

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768          122 TRRSLSDACNSVARQLEDVYSSISAAQRQ  150 (277)
Q Consensus       122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkh  150 (277)
                      +++.|.++|.++..+|+.+..+|..+.++
T Consensus        40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~n   68 (97)
T PF09177_consen   40 LKRELRNALQSIEWDLEDLEEAVRIVEKN   68 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34455555555555555555555554444

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=85.07  E-value=15  Score=35.34  Aligned_cols=97  Identities=12%  Similarity=0.160  Sum_probs=72.3

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh--------------
Q 023768          122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG--------------  187 (277)
Q Consensus       122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~--------------  187 (277)
                      .-+.+-.=+.++..|+|.+...|...+.+|...+..+|.-.++..+..+++..-+.....-...+.              
T Consensus        85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d  164 (333)
T PF05816_consen   85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD  164 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence            445555568999999999999999999999999999998877776666665554332222222222              


Q ss_pred             ----hHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768          188 ----DEFQSVRDIVQTLESKLIEIEGKQDITTLGV  218 (277)
Q Consensus       188 ----~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV  218 (277)
                          ..+..+.+.+..||.|+..++--+..+.++.
T Consensus       165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~  199 (333)
T PF05816_consen  165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTA  199 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                2456678888999999999888888888777

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=84.94  E-value=15  Score=41.05  Aligned_cols=109  Identities=16%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768          121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL  200 (277)
Q Consensus       121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L  200 (277)
                      --.|.|.+.-..+-+ .++.-..+...=+...+++...+.++-+..+-.+.++++++.-...+..++.|++.....+..+
T Consensus       278 ~~~~ql~~~~~~i~~-~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~  356 (1074)
T KOG0250|consen  278 EVERQLNNQEEEIKK-KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDL  356 (1074)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            334455444444332 2223333344444455666666767777777777788888888888888889999999988889


Q ss_pred             HHHHHHHhhhhHHHhHHHHHHHHHHHhhcC
Q 023768          201 ESKLIEIEGKQDITTLGVKKLCDRARELEN  230 (277)
Q Consensus       201 e~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~  230 (277)
                      +.++...+..-+..-.-+.+||.-|..++.
T Consensus       357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~  386 (1074)
T KOG0250|consen  357 KEEIREIENSIRKLKKEVDRLEKQIADLEK  386 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888877777888888887765543

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=84.67  E-value=29  Score=34.65  Aligned_cols=17  Identities=24%  Similarity=-0.042  Sum_probs=9.8

Q ss_pred             ccCCCCCCCCccccCCcc
Q 023768          249 LELPGITPSSRVTFSPIL  266 (277)
Q Consensus       249 lE~p~~tpssr~~s~pp~  266 (277)
                      +-.|+++ |+|+.+=||.
T Consensus       520 ~~~~~~~-~~~~~~~~~~  536 (553)
T PRK15048        520 LTNKPQT-PSRPASEQPP  536 (553)
T ss_pred             ccccccc-cccccccCCc
Confidence            3344444 3677777774

>PRK09039 hypothetical protein; Validated

Probab=84.65  E-value=31  Score=33.48  Aligned_cols=61  Identities=8%  Similarity=0.199  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768          144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  204 (277)
Q Consensus       144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki  204 (277)
                      .......+..|+..+.++|++.+..+...+.+|..++..++.++.-+..++..+...|.+.
T Consensus       107 ~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        107 LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344457888888888899988888887777777777777776666666666666555443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=84.58  E-value=21  Score=36.68  Aligned_cols=14  Identities=7%  Similarity=0.415  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHhc
Q 023768           61 LLAEVSSVQQELSH   74 (277)
Q Consensus        61 l~aQV~~L~~El~~   74 (277)
                      +..+|..|+++|.+
T Consensus       254 i~~~i~~l~~~i~~  267 (569)
T PRK04778        254 IEKEIQDLKEQIDE  267 (569)
T ss_pred             hHHHHHHHHHHHHH
Confidence            55555555555555

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.48  E-value=17  Score=33.11  Aligned_cols=68  Identities=13%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768          152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK  219 (277)
Q Consensus       152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~  219 (277)
                      ..||+.+..++++...+.........++...+..+..++......+..+|.|+..++..-.....-+.
T Consensus        91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk  158 (237)
T PF00261_consen   91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK  158 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence            45666677777777777777777777888888888888888888888888777777765555544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.25  E-value=6.2  Score=38.79  Aligned_cols=83  Identities=13%  Similarity=0.260  Sum_probs=53.8

Q ss_pred             CCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhh-------hHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768          114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-------DVNKIVEISQATQEEVTILRGRSKLI  186 (277)
Q Consensus       114 s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~-------klde~~ei~~~iq~eV~~i~~dv~~i  186 (277)
                      ++...+-.||..|...-+.+++.||++..+    .|||+++++.+-.       ++.+..+--++...-|++....+.+|
T Consensus       231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~sR----Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I  306 (359)
T PF10498_consen  231 SIESALPETKSQLDKLQQDISKTLEKIESR----EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI  306 (359)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            467888999999999888888888876654    5566665555433       34444444444444566666666666


Q ss_pred             hhHHHHHHHHHHhH
Q 023768          187 GDEFQSVRDIVQTL  200 (277)
Q Consensus       187 ~~dv~~v~~~V~~L  200 (277)
                      .++++.++..+..=
T Consensus       307 seeLe~vK~emeer  320 (359)
T PF10498_consen  307 SEELEQVKQEMEER  320 (359)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=83.18  E-value=4.8  Score=31.58  Aligned_cols=19  Identities=16%  Similarity=0.267  Sum_probs=7.4

Q ss_pred             hhHHHHHHHHHHhHHHHHH
Q 023768          187 GDEFQSVRDIVQTLESKLI  205 (277)
Q Consensus       187 ~~dv~~v~~~V~~Le~Ki~  205 (277)
                      ..-++.+...+..|+.++.
T Consensus        41 ~~klDa~~~~l~~l~~~V~   59 (75)
T PF05531_consen   41 NKKLDAQSAQLTTLNTKVN   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333434444444333

; GO: 0019028 viral capsid

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=82.79  E-value=17  Score=39.00  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             HHHHHHHhhhhHHHH-HHHHHHHHHHhHhhhhhhH
Q 023768          129 ACNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV  162 (277)
Q Consensus       129 Av~sv~kqLeqVs~s-L~~tKkhLsqRId~vD~kl  162 (277)
                      ..+++.+|+++|-.. ...++.|+...+++++..+
T Consensus       188 ~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l  222 (806)
T PF05478_consen  188 FLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL  222 (806)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            345566677777666 6777777777777776554

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.44  E-value=45  Score=31.88  Aligned_cols=104  Identities=18%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             eeEEeccc--CCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHH---HHHHHHhHhhhhhhHHHHH----HHHHHHHHHH
Q 023768          106 GYVWWKGW--KLPDMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKIV----EISQATQEEV  176 (277)
Q Consensus       106 gYmwWKG~--s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~t---KkhLsqRId~vD~klde~~----ei~~~iq~eV  176 (277)
                      -|-|+.-+  .+-+-+--....|.+-.+.+.++++.+.+.+...   +..|..++.++....++..    +-....+.++
T Consensus       139 WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL  218 (325)
T PF08317_consen  139 WYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQEL  218 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence            45554333  1233444455556666666666666665554444   3444455555444433211    1122333333


Q ss_pred             HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768          177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG  209 (277)
Q Consensus       177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~  209 (277)
                      .....++...+.++..++..+..++.++..++.
T Consensus       219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~  251 (325)
T PF08317_consen  219 AEQKEEIEAKKKELAELQEELEELEEKIEELEE  251 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444443333444444444444444444333

>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT

Probab=81.29  E-value=4.1  Score=33.19  Aligned_cols=15  Identities=27%  Similarity=0.594  Sum_probs=9.5

Q ss_pred             HhhhhheeeEEeccc
Q 023768           99 VIVAVGYGYVWWKGW  113 (277)
Q Consensus        99 ~iGavGYgYmwWKG~  113 (277)
                      ++.+.-+||+||-.+
T Consensus        11 ~lvl~L~~~l~~qs~   25 (110)
T PF10828_consen   11 VLVLGLGGWLWYQSQ   25 (110)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444556677888654

3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=80.83  E-value=12  Score=31.06  Aligned_cols=44  Identities=16%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHhh
Q 023768          166 VEISQATQEEVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIEG  209 (277)
Q Consensus       166 ~ei~~~iq~eV~~i~~dv~~-i~~dv~~v~~~V~~Le~Ki~~ie~  209 (277)
                      .++-+.+++.|..+-.++.- .+.||+.|+..|..||.++..++.
T Consensus        73 ~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~  117 (118)
T TIGR01837        73 DKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR  117 (118)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34566677777766666543 468999999999999999987754

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=80.83  E-value=5.6  Score=37.07  Aligned_cols=54  Identities=9%  Similarity=0.121  Sum_probs=33.3

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768          152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  205 (277)
Q Consensus       152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~  205 (277)
                      .+|++.+...++......-+++.++..++.|+.+++++|+....-++.+..+..
T Consensus        39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~   92 (263)
T PRK10803         39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK   92 (263)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            466666666666555555566666766666666666666666655555555444

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=80.65  E-value=16  Score=29.32  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhh
Q 023768          189 EFQSVRDIVQTLESKLIEIEGK  210 (277)
Q Consensus       189 dv~~v~~~V~~Le~Ki~~ie~k  210 (277)
                      .|..+..+|..|+.-..++|.|
T Consensus        74 ~V~~LE~~v~~LD~ysk~LE~k   95 (99)
T PF10046_consen   74 QVTELEQTVYELDEYSKELESK   95 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444554444444444443

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi

Probab=80.33  E-value=16  Score=27.51  Aligned_cols=64  Identities=11%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768          143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG  209 (277)
Q Consensus       143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~  209 (277)
                      .|....+.|.+.|+..+..|.+   +...=-.+.-++.+.+..+..++..|+..+..|...+..+..
T Consensus        23 ~i~~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~   86 (87)
T PF08700_consen   23 EIRQLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE   86 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445555566666666655544   355545566677777777777888888777777777776543

Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=80.26  E-value=19  Score=36.95  Aligned_cols=119  Identities=13%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             heeeEEecccCCCchHHHhh--------------------hhHHHHHHHHHHhhhhHHHHHH---HHHHHHHHhHhhhhh
Q 023768          104 GYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDR  160 (277)
Q Consensus       104 GYgYmwWKG~s~SDlM~VTk--------------------r~m~~Av~sv~kqLeqVs~sL~---~tKkhLsqRId~vD~  160 (277)
                      ||-=|-=+|..|.++-.-.+                    ......+..+.++++++|+.|.   .||+...+....+.+
T Consensus       238 gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~  317 (569)
T PRK04778        238 GYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD  317 (569)
T ss_pred             HHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            55557777888887633222                    1234456667778888887775   366666666666666


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhc----------hhhhhhHHHHHH---------------------HHHHhHHHHHHHHhh
Q 023768          161 DVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVR---------------------DIVQTLESKLIEIEG  209 (277)
Q Consensus       161 klde~~ei~~~iq~eV~~i~~d----------v~~i~~dv~~v~---------------------~~V~~Le~Ki~~ie~  209 (277)
                      .++...+-...++.++..++..          +..+..+++.+.                     .....+..++..++.
T Consensus       318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~  397 (569)
T PRK04778        318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK  397 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665555          333333333333                     334445555666666


Q ss_pred             hhHHHhHHHHHHH
Q 023768          210 KQDITTLGVKKLC  222 (277)
Q Consensus       210 kQd~tn~GV~~Lc  222 (277)
                      .|.--..-+..|+
T Consensus       398 eq~ei~e~l~~Lr  410 (569)
T PRK04778        398 EQEKLSEMLQGLR  410 (569)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665544

>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices

Probab=80.26  E-value=36  Score=28.99  Aligned_cols=103  Identities=14%  Similarity=0.254  Sum_probs=67.0

Q ss_pred             HHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 023768           98 VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT  177 (277)
Q Consensus        98 v~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~  177 (277)
                      +++++++|++=-             -.++..=.+++..+++++-..=..-+....++.+.++..+.++.+.-..+.+...
T Consensus        10 lllss~sfaA~~-------------~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~   76 (126)
T PF09403_consen   10 LLLSSISFAATA-------------TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIE   76 (126)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            356666665432             2566667888899999888888889999999999999999999999999999877


Q ss_pred             Hhhhc--hhhhhhHHHHHHHHHHhHHHHHH-HHhhhhHH
Q 023768          178 ILRGR--SKLIGDEFQSVRDIVQTLESKLI-EIEGKQDI  213 (277)
Q Consensus       178 ~i~~d--v~~i~~dv~~v~~~V~~Le~Ki~-~ie~kQd~  213 (277)
                      .+..+  ++-++++.+.|=..-.++=.+|+ +|..+|..
T Consensus        77 kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~i  115 (126)
T PF09403_consen   77 KLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQI  115 (126)
T ss_dssp             HHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76654  44566666665555554444444 34444433

; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=80.19  E-value=15  Score=35.98  Aligned_cols=100  Identities=16%  Similarity=0.335  Sum_probs=71.4

Q ss_pred             cccCC-CchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 023768          111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE  189 (277)
Q Consensus       111 KG~s~-SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~d  189 (277)
                      |-|.+ -|-|-.-|+|...++..++-+|++++..|..+-..+..|--.+...|.-...--+...++.++++..-.+...+
T Consensus       223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g  302 (384)
T KOG0972|consen  223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG  302 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45544 36788999999999999999999999999999888888888888777665544455555666776666655555


Q ss_pred             HH----HHHHHHHhHHHHHHHHhhh
Q 023768          190 FQ----SVRDIVQTLESKLIEIEGK  210 (277)
Q Consensus       190 v~----~v~~~V~~Le~Ki~~ie~k  210 (277)
                      |.    .+..++..+|.+=.+||.+
T Consensus       303 v~~rT~~L~eVm~e~E~~KqemEe~  327 (384)
T KOG0972|consen  303 VSSRTETLDEVMDEIEQLKQEMEEQ  327 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            53    3555555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 39/258 (15%), Positives = 79/258 (30%), Gaps = 62/258 (24%)

Query: 9   TFLVGAGIL-TSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSS 67
            F +   IL T+      R   V+D +         L         D      LL +   
Sbjct: 261 AFNLSCKILLTT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLD 312

Query: 68  VQ-QELSHVPRSVIIETSSGSGTGAKKYGVIVVIVA-VGYGYVWWKGWKLPDMMFATRRS 125
            + Q+L   PR    E  + +         + +I   +  G   W  WK  +        
Sbjct: 313 CRPQDL---PR----EVLTTNPR------RLSIIAESIRDGLATWDNWKHVN-------- 351

Query: 126 LSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184
               C+ +   +E   + +  A  R++  +++      +    I       ++++     
Sbjct: 352 ----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTIL---LSLIWF--- 397

Query: 185 LIGDEFQSVRDIVQTLESK-LIEIEGKQDITT-----LGVKKLCDRARELENGRPTELVQ 238
                   V  +V  L    L+E + K+   +     L +K   +    L       +V 
Sbjct: 398 --DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----SIVD 451

Query: 239 ASRYTLSRTTLELPGITP 256
              Y + + T +   + P
Sbjct: 452 --HYNIPK-TFDSDDLIP 466

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
2ba2_A	85	D12_ORF131, hypothetical UPF0134 protein MPN010; D	93.67
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.33
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	90.7
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	90.17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	89.19
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	88.73
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	88.28
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	87.5
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	87.19
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	86.83
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	85.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.87
4aj5_A	91	SKA1, spindle and kinetochore-associated protein 1	84.27
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	83.16
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	83.14
2akf_A	32	Coronin-1A; coiled coil, protein binding; 1.20A {S	82.91
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	82.91
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.47
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	82.28
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	81.81
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	81.55
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	81.4
2qyw_A	102	Vesicle transport through interaction with T-SNAR	81.08
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.03
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	80.68
1vcs_A	102	Vesicle transport through interaction with T- snar	80.07

>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1

Probab=93.67  E-value=0.13  Score=39.98  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 023768          120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT  199 (277)
Q Consensus       120 ~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~  199 (277)
                      |||+|.+..-....            .++..|.+|...+..++.-|-|-+..=-+++.+++.....-|.-++.|-..+..
T Consensus         8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~   75 (85)
T 2ba2_A            8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG   75 (85)
T ss_dssp             BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88998887642221            245555556555555555554445444445555555555556666777777777


Q ss_pred             HHHHHHHHh
Q 023768          200 LESKLIEIE  208 (277)
Q Consensus       200 Le~Ki~~ie  208 (277)
                      +..+++.+|
T Consensus        76 ~nkRLDkle   84 (85)
T 2ba2_A           76 INKRLDNLE   84 (85)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHhhccC
Confidence            778888775

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.33  E-value=2.2  Score=42.81  Aligned_cols=104  Identities=9%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH-------HHHHHHHHHHHHHhhhchhhhh
Q 023768          115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-------VEISQATQEEVTILRGRSKLIG  187 (277)
Q Consensus       115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~-------~ei~~~iq~eV~~i~~dv~~i~  187 (277)
                      +-++|-=+-|.+.+-++.|..+|++++..=..+-....+..+.+..++.+.       .|++.++++.+..|++.|..--
T Consensus        51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl  130 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV  130 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345777788999999999999999997776666666666666555554443       3444455555555555555544


Q ss_pred             hHHHHHHHHHHhHHHHHHHHhh---hhHHHhHHH
Q 023768          188 DEFQSVRDIVQTLESKLIEIEG---KQDITTLGV  218 (277)
Q Consensus       188 ~dv~~v~~~V~~Le~Ki~~ie~---kQd~tn~GV  218 (277)
                      .-|+.|+..|+.+-.||.++|-   -|-++|.|=
T Consensus       131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs  164 (562)
T 3ghg_A          131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS  164 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5556666666666677776665   455566553

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=90.70  E-value=3.4  Score=32.87  Aligned_cols=79  Identities=10%  Similarity=0.281  Sum_probs=58.6

Q ss_pred             HHHHHhh---hhHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768          131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  203 (277)
Q Consensus       131 ~sv~kqL---eqVs~sL~~tKkhLsqRId~vD----~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K  203 (277)
                      +.++|||   .+..+.+..+|+.|..+++.+.    .|++++.+....++.++..=..++..++.+++.....=..|..+
T Consensus        11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~   90 (107)
T 2no2_A           11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE   90 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555   4667788899999999998865    56777777888888888887777777777777777766666677


Q ss_pred             HHHHhh
Q 023768          204 LIEIEG  209 (277)
Q Consensus       204 i~~ie~  209 (277)
                      ++.++.
T Consensus        91 ~~~l~~   96 (107)
T 2no2_A           91 FAELEK   96 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=90.17  E-value=2.9  Score=41.10  Aligned_cols=96  Identities=10%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 023768          115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI  186 (277)
Q Consensus       115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKk---hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~-----~i  186 (277)
                      +.|.|--..++....+..|...|++++..-..++.   +|...+...+.++.+..+.++.-.+++.+.+.-++     .+
T Consensus        87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~  166 (464)
T 1m1j_B           87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI  166 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            48888888999999999999999999876666553   34444444444444444433333333333332222     12


Q ss_pred             hhHHHHHHHHHHhHHHHHHHHhhh
Q 023768          187 GDEFQSVRDIVQTLESKLIEIEGK  210 (277)
Q Consensus       187 ~~dv~~v~~~V~~Le~Ki~~ie~k  210 (277)
                      ...|..|+..+..|..||..++.+
T Consensus       167 ~~~i~~L~~~~~~l~~ki~~l~~~  190 (464)
T 1m1j_B          167 PSSLRVLRAVIDSLHKKIQKLENA  190 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.19  E-value=2.6  Score=39.79  Aligned_cols=66  Identities=9%  Similarity=-0.056  Sum_probs=49.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768          158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD  223 (277)
Q Consensus       158 vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~  223 (277)
                      +....+++.++.++.+.+-..+..|.+.++.+++.+++.-..++..+..+...-.-+++-...+|.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (487)
T 3oja_A          412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV  477 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence            334555666678888888888888888888888888888888887777777776677776666665

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=88.73  E-value=7.4  Score=34.13  Aligned_cols=39  Identities=15%  Similarity=0.277  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768          126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK  164 (277)
Q Consensus       126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde  164 (277)
                      ++.++..+...+..+...+...-.++...++.+....++
T Consensus         5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~   43 (213)
T 3g67_A            5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN   43 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555554444444444444444443333

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=88.28  E-value=4.9  Score=35.30  Aligned_cols=69  Identities=10%  Similarity=0.111  Sum_probs=33.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768          132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL  200 (277)
Q Consensus       132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L  200 (277)
                      .+...+++++..+...-.++....+.+....++..+....+.+.+.+....+..+...+..+-..+..+
T Consensus         4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T 3g67_A            4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGET   72 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555544444444444444444444433333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=87.50  E-value=8.6  Score=36.02  Aligned_cols=76  Identities=13%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768          125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE  201 (277)
Q Consensus       125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le  201 (277)
                      -|.+++..+-..-..+-++|..+.+.+.+-|+..-.. .|+......+|+++++++..+.+++-.-.+-++.|-.|-
T Consensus       356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (471)
T 3mq9_A          356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM  431 (471)
T ss_dssp             HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence            4555555554444466778888888888888776443 477788899999999999999988887777766666654

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=87.19  E-value=9.4  Score=32.10  Aligned_cols=80  Identities=13%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHH--------hHHH
Q 023768          143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES  202 (277)
Q Consensus       143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~------------~i~~dv~~i~~dv~~v~~~V~--------~Le~  202 (277)
                      -+..-|++|+.+.++|=.+.|+.+.+++.+++||.            .+..|+.....+++.+..-|.        .+|.
T Consensus        11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~   90 (141)
T 3okq_A           11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA   90 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence            35667788888888888888888888888877753            455566666666666666554        3567


Q ss_pred             HHHHHhhhhHHHhHHHHHHH
Q 023768          203 KLIEIEGKQDITTLGVKKLC  222 (277)
Q Consensus       203 Ki~~ie~kQd~tn~GV~~Lc  222 (277)
                      -+..|-+-|+|.+.==.++-
T Consensus        91 EL~~VceEQqfl~~QedL~~  110 (141)
T 3okq_A           91 ELDKVCEEQQFLTLQEELIL  110 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77888888888776544433

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=85.42  E-value=1.3  Score=35.34  Aligned_cols=54  Identities=22%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      ++.-+|.|||=.+                               ++..|++.|..|++.++..+++..+....+++.++.
T Consensus        72 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~  120 (133)
T 1fxk_C           72 VIMSVGAGVAIKK-------------------------------NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK  120 (133)
T ss_dssp             EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEe-------------------------------eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999887                               347788888888888888888876666666666655


Q ss_pred             hhhch
Q 023768          179 LRGRS  183 (277)
Q Consensus       179 i~~dv  183 (277)
                      +...+
T Consensus       121 ~~~~l  125 (133)
T 1fxk_C          121 LSPQA  125 (133)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.87  E-value=8.2  Score=36.97  Aligned_cols=96  Identities=9%  Similarity=0.093  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchhhhhhH-------
Q 023768          124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKLIGDE-------  189 (277)
Q Consensus       124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD-------~klde~~ei~~~iq~eV~~i~~dv~~i~~d-------  189 (277)
                      ..+.+.+..+...+++....+...++++..+.+...       .+.++..+..+.++++......+...+..+       
T Consensus       459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (597)
T 3oja_B          459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKE  538 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcc
Confidence            345566666666677777777777777777766655       111222233334444444443444444433       


Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768          190 FQSVRDIVQTLESKLIEIEGKQDITTLGVK  219 (277)
Q Consensus       190 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~  219 (277)
                      .+.++..+..||.+++.....+....+-..
T Consensus       539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~  568 (597)
T 3oja_B          539 TEDLEQENIALEKQLDNKRAKQAELRQETS  568 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence            344445555555555555555544444443

>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=84.27  E-value=9.3  Score=29.96  Aligned_cols=44  Identities=27%  Similarity=0.464  Sum_probs=39.2

Q ss_pred             hhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768          180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE  227 (277)
Q Consensus       180 ~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~  227 (277)
                      +.-++.|++++-.|+.....+|--+.    .|.-++.-..-||++.++
T Consensus        36 k~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~   79 (91)
T 4aj5_A           36 KTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE   79 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999888    899999999999999874

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=83.16  E-value=19  Score=31.00  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768          122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE  201 (277)
Q Consensus       122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le  201 (277)
                      .-+.+.++...+.+.+-++.+.|..-|+.-+++-+...+-...    ....+.|+..++...+..-.|...+++.|..||
T Consensus        56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~r----i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE  131 (168)
T 3o0z_A           56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR----ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE  131 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666667777776666664444443322222111    344556666667777777778888888888888


Q ss_pred             HHHHHHh
Q 023768          202 SKLIEIE  208 (277)
Q Consensus       202 ~Ki~~ie  208 (277)
                      ..-..++
T Consensus       132 Ke~a~~e  138 (168)
T 3o0z_A          132 KEKNNLE  138 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            7766554

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=83.14  E-value=3.1  Score=34.09  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768          122 TRRSLSDACNSVARQLEDVYSSISAAQRQ  150 (277)
Q Consensus       122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkh  150 (277)
                      +++-|.++|.++..+|+.+.++|..+.++
T Consensus        68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~n   96 (130)
T 4dnd_A           68 TTNELRNGLRSIEWDLEDLEETIGIVEAN   96 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66777777777777777777777777655

>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}

Probab=82.91  E-value=1.7  Score=27.70  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=24.5

Q ss_pred             hhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768          184 KLIGDEFQSVRDIVQTLESKLIEIEGKQD  212 (277)
Q Consensus       184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd  212 (277)
                      +++..|+..++.+|..|..+++++|+...
T Consensus         2 srlee~~r~l~~ivq~lq~r~drle~tvq   30 (32)
T 2akf_A            2 SRLEEDVRNLNAIVQKLQERLDRLEETVQ   30 (32)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56678899999999999999999988654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.47  E-value=6.2  Score=34.87  Aligned_cols=23  Identities=4%  Similarity=0.107  Sum_probs=10.2

Q ss_pred             hhhHHHHHHHHHHhHHHHHHHHh
Q 023768          186 IGDEFQSVRDIVQTLESKLIEIE  208 (277)
Q Consensus       186 i~~dv~~v~~~V~~Le~Ki~~ie  208 (277)
                      +..+++.....+..+|.++-++.
T Consensus        95 L~kEie~~~~~i~~lE~eile~~  117 (256)
T 3na7_A           95 LNIEEDIAKERSNQANREIENLQ  117 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=82.28  E-value=9.6  Score=27.69  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 023768          125 SLSDACNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF  190 (277)
Q Consensus       125 ~m~~Av~sv~kqLeqVs~s-L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv  190 (277)
                      .|+.+.+.|-.|-|.+-.. -..+..-...+++.+-.......+-....+.++++++..+..+..++
T Consensus         6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el   72 (77)
T 3trt_A            6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV   72 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666554432 23344445555554444444443334444444444444433333333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=81.81  E-value=6.3  Score=30.09  Aligned_cols=52  Identities=10%  Similarity=0.149  Sum_probs=25.4

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768          152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  203 (277)
Q Consensus       152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K  203 (277)
                      .+|++.+...++......-.++.++..++.++..+++.++....-+..|..+
T Consensus         5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r   56 (83)
T 2xdj_A            5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER   56 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4455555544433333344455555555555555555555555444444433

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=81.55  E-value=6.6  Score=30.28  Aligned_cols=53  Identities=9%  Similarity=0.182  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768          124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL  179 (277)
Q Consensus       124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i  179 (277)
                      +.+...++++...++++...=...|+   +-|..++..+||..++..++.-||..+
T Consensus         8 ~df~~~~~~i~~~l~~~~~~~ge~Rk---~~i~~ie~~ldEA~ell~qMelE~~~~   60 (97)
T 3onj_A            8 SDFKTTLEQAKASLAEAPSQPLSQRN---TTLKHVEQQQDELFDLLDQMDVEVNNS   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45677888888888888733223333   447778889999999999999999888

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=81.40  E-value=3.9  Score=33.44  Aligned_cols=53  Identities=23%  Similarity=0.319  Sum_probs=39.0

Q ss_pred             HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768           99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  178 (277)
Q Consensus        99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~  178 (277)
                      |+.-+|.||+=.+                               .+..|++.|..|++.++..+++..+....+++..+.
T Consensus        82 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~  130 (151)
T 2zdi_C           82 AIVSVGSGYAVER-------------------------------SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE  130 (151)
T ss_dssp             EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999887                               347788888888888888887776666666666555


Q ss_pred             hhhc
Q 023768          179 LRGR  182 (277)
Q Consensus       179 i~~d  182 (277)
                      +...
T Consensus       131 ~~~~  134 (151)
T 2zdi_C          131 VARK  134 (151)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=81.08  E-value=4.8  Score=31.40  Aligned_cols=61  Identities=8%  Similarity=0.096  Sum_probs=40.5

Q ss_pred             chHHHhhhhHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768          117 DMMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR  180 (277)
Q Consensus       117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~-~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~  180 (277)
                      +++-.--+.+...++++++.+.++..... ..|+   +.|..++..+||..|+..++.-|+..+-
T Consensus        15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk---~~i~~ie~~ldEA~eLl~qMelE~r~~p   76 (102)
T 2qyw_A           15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKK---KLVRDFDEKQQEANETLAEMEEELRYAP   76 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34444455666777777777777643322 3333   3467788888999999998888887764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.03  E-value=19  Score=29.59  Aligned_cols=63  Identities=8%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768          151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI  213 (277)
Q Consensus       151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~  213 (277)
                      +.++++.+...+++...=....+.++...+...+....++..++..+..|+.++..+|...+.
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344556666666666666667777777777777777777888888888888888877766553

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=80.68  E-value=17  Score=35.71  Aligned_cols=11  Identities=9%  Similarity=0.169  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcC
Q 023768           65 VSSVQQELSHV   75 (277)
Q Consensus        65 V~~L~~El~~L   75 (277)
                      |.+=++|--.|
T Consensus        23 ~~~~~~~~~~~   33 (464)
T 1m1j_B           23 LDKRQEAAPTL   33 (464)
T ss_dssp             -----------
T ss_pred             cccccccCCCC
Confidence            44444444444

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=80.07  E-value=2.2  Score=33.26  Aligned_cols=61  Identities=8%  Similarity=0.121  Sum_probs=43.7

Q ss_pred             chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768          117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR  180 (277)
Q Consensus       117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~  180 (277)
                      +++----+.+...++++...+.++...=...|+   +-|..++..+||..++..++.-||..+-
T Consensus         5 elFe~YE~df~~l~~~i~~kl~~i~~~~geerk---~~i~~ie~~l~EA~ell~qMelE~r~~p   65 (102)
T 1vcs_A            5 SSGEGYEQDFAVLTAEITSKIARVPRLPPDEKK---QMVANVEKQLEEARELLEQMDLEVREIP   65 (102)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            333334466778888899888887643223333   3377888999999999999999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	90.33

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.33  E-value=0.27  Score=36.89  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 023768          121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS  183 (277)
Q Consensus       121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv  183 (277)
                      -+++-|.++|.++..+|+.+..+|..+.++- .|-..-+..++.=...+..++++|..|+..+
T Consensus        42 ~~~~eL~~~l~siewdL~dLe~av~~ve~np-~kf~l~~~ei~~Rr~fi~~~~~~I~~~~~~l  103 (106)
T d1lvfa_          42 WTTNELRNNLRSIEWDLEDLDETISIVEANP-RKFNLDATELSIRKAFITSTRQIVRDMKDQM  103 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGGTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999998763 3333223345555556666666666665544