Citrus Sinensis ID: 023785

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------

MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPEKKEEKCGGGDGGGGDGAANKEEKKGGGGGENKENKAAAGEQENQEKKEGDNKKSNDDEAKAAAADATAATEETTVVELKKNINEYYYYPQRYAMEMYAYPPQIFSDENPNACSVM

cccHHHHHHHHHHHcccccccEEEEEccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHccccccEEEccccccEEEEEEEccHHHHHHHHHHHccccEEEEcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHcccccccccccccccccccccccccccccccccccccc

cccHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcEccHHHHHHHHHHHHcccEEEEcccccccccHHHcccccccccccccccccccEEEEEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEEcHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcc

MHCEGCARKVRRCLKgfegvedvitdckthkvivkgekadplkvLDRVQRKSHRqvellspipkptaaeeekkaeekappkpeekkeepQVIIVVLKVHMHCEGCSLEIKKRILRMegvesaepdlknsqvtvkgvfdppklvDYVYKRtgkhavivkqepekkeekcgggdggggdgaankeekkgggggenkenkaaageqenqekkegdnkksnDDEAKAAAADATAATEETTVVELKKNINeyyyypqryamemyayppqifsdenpnacsvm

mhcegcarkvrrclkgfegvedvitdckthkvivkgekadplkvldrvqrkshrqvellspipkptaaeeekkaeekappkpeekkeepQVIIVVLKVHMHCEGCSLEIKKRILRMEGVesaepdlknsqvtvkgvfdppkLVDYVYKRTGKhavivkqepekkeekcgggdggggdgaankeekkgggggenkenkaaageqenqekkegdnkksnDDEAKAAAadataateettvVELKKNINEYYYYPQRYAMEMYAYPPQIFSDENPNACSVM

MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIpkptaaeeekkaeekappkpeekkeepQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVkqepekkeekcgggdggggdgaankeekkgggggenkenkaaageqenqekkegdnkkSNddeakaaaadataateettVVELKKNINEYYYYPQRYAMEMYAYPPQIFSDENPNACSVM

****GCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKV**********************************************VIIVVLKVHMHCEGCSLEIKKRILRMEGV**********QVTVKGVFDPPKLVDYVYKRTGKHAVIV*****************************************************************************TTVVELKKNINEYYYYPQRYAMEMYAYPPQIF***********

MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIV**************************************************************************************INEYYYYPQRYAMEMYAYPPQIFSDENPNACSVM

MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKP***********************PQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQ*****************DGAAN*****************************************************TTVVELKKNINEYYYYPQRYAMEMYAYPPQIFSDENPNACSVM

MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPT*********************EPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQE***********************************************************************TEETTVVELKKNINEYYYYPQRYAMEMYAYPPQIFSDENPNACSVM

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		277	2.2.26 [Sep-21-2011]
Q9SZN7		153	Heavy metal-associated is	no	no	0.324	0.588	0.376	2e-07

>sp\|Q9SZN7\|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1	Back alignment and function desciption

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 1   MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
           M CEGC RKVRR ++G +GV  V  + K HKV V G   DP KV+ R+  ++ ++VEL  
Sbjct: 34  MDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGY-VDPNKVVARMSHRTGKKVELWP 92

Query: 61  PIPKPTAAEEEKKA--EEKAPPKPEEKKEEPQV 91
            +P    A        ++KAP     + ++P V
Sbjct: 93  YVPYDVVAHPYAAGVYDKKAPSGYVRRVDDPGV 125

Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		277
449454814		333	PREDICTED: uncharacterized protein LOC10	0.916	0.762	0.677	2e-83
255540171		349	metal ion binding protein, putative [Ric	0.971	0.770	0.671	2e-81
449440534		314	PREDICTED: uncharacterized protein LOC10	0.927	0.818	0.589	3e-73
449528291		358	PREDICTED: uncharacterized protein LOC10	0.971	0.751	0.529	2e-70
356527888		310	PREDICTED: uncharacterized protein LOC10	0.916	0.819	0.616	6e-70
225456373		311	PREDICTED: uncharacterized protein LOC10	0.924	0.823	0.672	7e-69
145359095		283	Heavy-metal-associated domain--containin	0.898	0.879	0.537	2e-67
62318564		283	putative protein [Arabidopsis thaliana]	0.898	0.879	0.537	2e-67
186531069		290	Heavy-metal-associated domain--containin	0.898	0.858	0.537	3e-67
297795873		284	hypothetical protein ARALYDRAFT_495136 [	0.898	0.876	0.534	4e-66

>gi\|449454814\|ref\|XP_004145149.1\| PREDICTED: uncharacterized protein LOC101222573 [Cucumis sativus] gi\|449471026\|ref\|XP_004153186.1\| PREDICTED: uncharacterized protein LOC101218262 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/282 (67%), Positives = 212/282 (75%), Gaps = 28/282 (9%)

Query: 1   MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
           MHCEGCARKVRRCL+GFEGVEDVITDCKTHKV+VKGEKADPLKVLDRVQRKSHRQVELLS
Sbjct: 75  MHCEGCARKVRRCLRGFEGVEDVITDCKTHKVVVKGEKADPLKVLDRVQRKSHRQVELLS 134

Query: 61  PIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVE 120
           PIPKP   EE K  E++ P   E+K+E  QV+ VVL VHMHCE C+ EIKKRILRM+GV+
Sbjct: 135 PIPKPPEPEELKPEEKEKPKPEEKKEEP-QVVTVVLGVHMHCEACAQEIKKRILRMKGVD 193

Query: 121 SAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPEKKEEKCGGGDGGGGDGAA 180
           + E DLK SQV+V GVFDPPKLVDYVYKRTGKHAVIVK +PEKK+++         +  A
Sbjct: 194 AVEADLKASQVSVTGVFDPPKLVDYVYKRTGKHAVIVKTDPEKKQKE--TEAKETKEEKA 251

Query: 181 NKE---EKKGGGGGENKE-NKAAAGEQENQEKKEGDNKKSNDDEAKAAAADATAATEETT 236
           N+E   EKKG  GGENKE NK A G                  EAK+A        EET 
Sbjct: 252 NEESGKEKKGDEGGENKESNKEAEG---------------GGGEAKSA---VEVTPEETI 293

Query: 237 VVELKKNINEYY-YYPQRYAMEMYAYPPQIFSDENPNACSVM 277
           +VELKK  NEYY +YPQRYAMEMYAYPPQIFSDENPNACSVM
Sbjct: 294 LVELKK--NEYYQHYPQRYAMEMYAYPPQIFSDENPNACSVM 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255540171\|ref\|XP_002511150.1\| metal ion binding protein, putative [Ricinus communis] gi\|223550265\|gb\|EEF51752.1\| metal ion binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449440534\|ref\|XP_004138039.1\| PREDICTED: uncharacterized protein LOC101211886 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449528291\|ref\|XP_004171138.1\| PREDICTED: uncharacterized protein LOC101226706 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356527888\|ref\|XP_003532538.1\| PREDICTED: uncharacterized protein LOC100796289 [Glycine max]	Back alignment and taxonomy information

>gi\|225456373\|ref\|XP_002284075.1\| PREDICTED: uncharacterized protein LOC100249014 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|145359095\|ref\|NP_199887.2\| Heavy-metal-associated domain--containing protein [Arabidopsis thaliana] gi\|332008601\|gb\|AED95984.1\| Heavy-metal-associated domain--containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|62318564\|dbj\|BAD94944.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186531069\|ref\|NP_001119410.1\| Heavy-metal-associated domain--containing protein [Arabidopsis thaliana] gi\|332008603\|gb\|AED95986.1\| Heavy-metal-associated domain--containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297795873\|ref\|XP_002865821.1\| hypothetical protein ARALYDRAFT_495136 [Arabidopsis lyrata subsp. lyrata] gi\|297311656\|gb\|EFH42080.1\| hypothetical protein ARALYDRAFT_495136 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		277
TAIR\|locus:2167366		355	FP3 "farnesylated protein 3" [	0.223	0.174	0.903	8.3e-68
TAIR\|locus:2163300		290	AT5G50740 [Arabidopsis thalian	0.223	0.213	0.854	3.5e-67
TAIR\|locus:2075497		246	AT3G02960 "AT3G02960" [Arabido	0.245	0.276	0.470	3.7e-41
TAIR\|locus:2153969		319	AT5G24580 "AT5G24580" [Arabido	0.231	0.200	0.484	1.3e-31
TAIR\|locus:2142614		392	AT5G03380 [Arabidopsis thalian	0.220	0.155	0.5	5.8e-27
TAIR\|locus:2057951		386	AT2G36950 [Arabidopsis thalian	0.534	0.383	0.348	1.5e-25
TAIR\|locus:2018768		287	AT1G29000 [Arabidopsis thalian	0.563	0.543	0.273	7.1e-25
TAIR\|locus:2046183		245	AT2G28090 [Arabidopsis thalian	0.541	0.612	0.294	1.4e-17
TAIR\|locus:2096204		577	AT3G05220 [Arabidopsis thalian	0.223	0.107	0.476	7.6e-14
TAIR\|locus:2156927		147	HIPP27 "heavy metal associated	0.220	0.414	0.442	1.6e-13

TAIR\|locus:2167366 FP3 "farnesylated protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 300 (110.7 bits), Expect = 8.3e-68, Sum P(3) = 8.3e-68
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query:     1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
             MHCEGCARKVRRCLKGFEGVEDV+TDCKT KV+VKGEKADPLKVL RVQRK+HRQV+LLS
Sbjct:    81 MHCEGCARKVRRCLKGFEGVEDVMTDCKTGKVVVKGEKADPLKVLARVQRKTHRQVQLLS 140

Query:    61 PI 62
             PI
Sbjct:   141 PI 142

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0046914 "transition metal ion binding" evidence=IDA

GO:0046916 "cellular transition metal ion homeostasis" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR\|locus:2163300 AT5G50740 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075497 AT3G02960 "AT3G02960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2153969 AT5G24580 "AT5G24580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2142614 AT5G03380 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2057951 AT2G36950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018768 AT1G29000 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2046183 AT2G28090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096204 AT3G05220 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156927 HIPP27 "heavy metal associated isoprenylated plant protein 27" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		277
cd00371		63	cd00371, HMA, Heavy-metal-associated domain (HMA)	1e-09
cd00371		63	cd00371, HMA, Heavy-metal-associated domain (HMA)	4e-09
pfam00403		62	pfam00403, HMA, Heavy-metal-associated domain	1e-08
pfam00403		62	pfam00403, HMA, Heavy-metal-associated domain	2e-06
PRK10671		834	PRK10671, copA, copper exporting ATPase; Provision	5e-05

>gnl\|CDD\|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	Back alignment and domain information

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 1  MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 57
          M C GC  K+ + L+   GVE V  D +T K  V+ +     + L      +  +  
Sbjct: 7  MTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKAR 63

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl\|CDD\|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	Back alignment and domain information

>gnl\|CDD\|215902 pfam00403, HMA, Heavy-metal-associated domain	Back alignment and domain information

>gnl\|CDD\|215902 pfam00403, HMA, Heavy-metal-associated domain	Back alignment and domain information

>gnl\|CDD\|182635 PRK10671, copA, copper exporting ATPase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		277
KOG0207		951	consensus Cation transport ATPase [Inorganic ion t	99.28
PF00403		62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.25
KOG0207		951	consensus Cation transport ATPase [Inorganic ion t	99.24
PRK10671		834	copA copper exporting ATPase; Provisional	99.2
COG2608		71	CopZ Copper chaperone [Inorganic ion transport and	99.03
KOG1603		73	consensus Copper chaperone [Inorganic ion transpor	98.95
PF00403		62	HMA: Heavy-metal-associated domain; InterPro: IPR0	98.81
KOG4656		247	consensus Copper chaperone for superoxide dismutas	98.55
COG2608		71	CopZ Copper chaperone [Inorganic ion transport and	98.53
KOG1603		73	consensus Copper chaperone [Inorganic ion transpor	98.23
PLN02957		238	copper, zinc superoxide dismutase	98.08
KOG4656		247	consensus Copper chaperone for superoxide dismutas	97.93
PRK10671		834	copA copper exporting ATPase; Provisional	97.85
COG2217		713	ZntA Cation transport ATPase [Inorganic ion transp	97.7
TIGR00003		68	copper ion binding protein. This model describes a	97.45
PLN02957		238	copper, zinc superoxide dismutase	96.82
COG2217		713	ZntA Cation transport ATPase [Inorganic ion transp	96.34
PRK11033		741	zntA zinc/cadmium/mercury/lead-transporting ATPase	95.71
TIGR00003		68	copper ion binding protein. This model describes a	94.12
PRK11033		741	zntA zinc/cadmium/mercury/lead-transporting ATPase	89.94
TIGR02052		92	MerP mercuric transport protein periplasmic compon	89.12
PRK13748		561	putative mercuric reductase; Provisional	80.74

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=99.28  E-value=2.7e-11  Score=121.68  Aligned_cols=134  Identities=22%  Similarity=0.362  Sum_probs=116.3

Q ss_pred             CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC-CChHHHHHHHhhccCCcccccCCCCCCCchhHHHhhhcCCC
Q 023785            1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK-ADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAP   79 (277)
Q Consensus         1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~-~~~~~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~~~~~~~~   79 (277)
                      |+|..|++.|+.+++..+|+.++.+++.+++.+|..+. ++++.+.++|++ +||.+.+++...                
T Consensus         3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~----------------   65 (951)
T KOG0207|consen    3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE----------------   65 (951)
T ss_pred             ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc----------------
Confidence            89999999999999999999999999999999887543 489999999997 599997764422                


Q ss_pred             CCCCcCCCCCceEEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc---CCChHHHHHHHHHhcCCcEE
Q 023785           80 PKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAV  155 (277)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~---~~~~~~l~~~l~k~~G~~a~  155 (277)
                               ....+..|+| ||+|.+|++.|++.|+++.||.++.+.+......|.+   .++++.+.+.+. ++||.+.
T Consensus        66 ---------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~  135 (951)
T KOG0207|consen   66 ---------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAE  135 (951)
T ss_pred             ---------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccce
Confidence                     2233778999 9999999999999999999999999999999999874   478999999995 9999998


Q ss_pred             EecCCC
Q 023785          156 IVKQEP  161 (277)
Q Consensus       156 ~v~~~~  161 (277)
                      ++....
T Consensus       136 ~i~~~~  141 (951)
T KOG0207|consen  136 LIESVN  141 (951)
T ss_pred             ehhccc
Confidence            776544

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures	Back alignment and domain information

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10671 copA copper exporting ATPase; Provisional	Back alignment and domain information

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures	Back alignment and domain information

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN02957 copper, zinc superoxide dismutase	Back alignment and domain information

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10671 copA copper exporting ATPase; Provisional	Back alignment and domain information

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00003 copper ion binding protein	Back alignment and domain information

>PLN02957 copper, zinc superoxide dismutase	Back alignment and domain information

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

>TIGR00003 copper ion binding protein	Back alignment and domain information

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

>TIGR02052 MerP mercuric transport protein periplasmic component	Back alignment and domain information

>PRK13748 putative mercuric reductase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		277
2crl_A		98	Copper chaperone for superoxide dismutase; SOD1, f	4e-16
2crl_A		98	Copper chaperone for superoxide dismutase; SOD1, f	2e-11
2rop_A		202	Copper-transporting ATPase 2; wilson protein, mobi	2e-13
1qup_A		222	Superoxide dismutase 1 copper chaperone; two domai	2e-12
1qup_A		222	Superoxide dismutase 1 copper chaperone; two domai	3e-10
1jk9_B		249	CCS, copper chaperone for superoxide dismutase; pr	3e-10
1jk9_B		249	CCS, copper chaperone for superoxide dismutase; pr	3e-08
3iwl_A		68	Copper transport protein ATOX1; beta-alpha-beta-BE	4e-10
3iwl_A		68	Copper transport protein ATOX1; beta-alpha-beta-BE	6e-08
1cc8_A		73	Protein (metallochaperone ATX1); copper transport,	3e-08
1cc8_A		73	Protein (metallochaperone ATX1); copper transport,	1e-06
2ew9_A		149	Copper-transporting ATPase 2; copper trafficking,	8e-08
1p6t_A		151	Potential copper-transporting ATPase; COPA, P-type	1e-07
2roe_A		66	Heavy metal binding protein; NMR {Thermus thermoph	4e-05
2qif_A		69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	1e-04
3cjk_B		75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	2e-04
2xmm_A		64	SSR2857 protein, ATX1; metal transport, copper hom	2e-04
1kvi_A		79	Copper-transporting ATPase 1; menkes, Cu-protein,	3e-04
2l3m_A		71	Copper-ION-binding protein; structural genomics, c	3e-04
1osd_A		72	MERP, hypothetical protein MERP; mercury resistanc	4e-04
2kkh_A		95	Putative heavy metal transporter; zinc transport,	4e-04
2k2p_A		85	Uncharacterized protein ATU1203; putative metal-bi	5e-04
2g9o_A		90	Copper-transporting ATPase 1; menkes disease, solu	7e-04

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98	Back alignment and structure

 Score = 71.0 bits (174), Expect = 4e-16
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 77  KAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV 136
            +     +   +  +  +   V M C+ C   ++K +  + GV+  E  L++  V V   
Sbjct: 4   GSSGMASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT 63

Query: 137 FDPPKLVDYVYKRTGKHAVIVKQEPEKKEE 166
               ++   + + TG+ AV+      + + 
Sbjct: 64  LPSQEVQALL-EGTGRQAVLKGMGSGQLQN 92

PyMOL of 2crl

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98	Back alignment and structure

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202	Back alignment and structure

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222	Back alignment and structure

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222	Back alignment and structure

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249	Back alignment and structure

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249	Back alignment and structure

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68	Back alignment and structure

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68	Back alignment and structure

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73	Back alignment and structure

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73	Back alignment and structure

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149	Back alignment and structure

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151	Back alignment and structure

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66	Back alignment and structure

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Length = 69	Back alignment and structure

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75	Back alignment and structure

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64	Back alignment and structure

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Length = 79	Back alignment and structure

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Length = 71	Back alignment and structure

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72	Back alignment and structure

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Length = 95	Back alignment and structure

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85	Back alignment and structure

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Length = 90	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		277
2ew9_A		149	Copper-transporting ATPase 2; copper trafficking,	99.75
1p6t_A		151	Potential copper-transporting ATPase; COPA, P-type	99.71
2rop_A		202	Copper-transporting ATPase 2; wilson protein, mobi	99.67
3iwl_A		68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.38
4a4j_A		69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.28
3dxs_X		74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.27
3fry_A		73	Probable copper-exporting P-type ATPase A; transpo	99.22
1cc8_A		73	Protein (metallochaperone ATX1); copper transport,	99.18
2crl_A		98	Copper chaperone for superoxide dismutase; SOD1, f	99.1
2roe_A		66	Heavy metal binding protein; NMR {Thermus thermoph	99.06
2xmm_A		64	SSR2857 protein, ATX1; metal transport, copper hom	99.05
1mwy_A		73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.02
1osd_A		72	MERP, hypothetical protein MERP; mercury resistanc	99.02
2xmw_A		71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.02
1q8l_A		84	Copper-transporting ATPase 1; metal binding protei	98.99
1aw0_A		72	Menkes copper-transporting ATPase; copper-binding	98.99
3cjk_B		75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	98.99
2l3m_A		71	Copper-ION-binding protein; structural genomics, c	98.99
1y3j_A		77	Copper-transporting ATPase 1; ferrodoxin-like fold	98.98
2g9o_A		90	Copper-transporting ATPase 1; menkes disease, solu	98.98
1fvq_A		72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	98.97
2k2p_A		85	Uncharacterized protein ATU1203; putative metal-bi	98.95
1kvi_A		79	Copper-transporting ATPase 1; menkes, Cu-protein,	98.95
1cpz_A		68	Protein (COPZ); copper chaperone, metal transport,	98.95
2qif_A		69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	98.93
2kt2_A		69	Mercuric reductase; nmera, MERA, HMA domain, mercu	98.92
2kyz_A		67	Heavy metal binding protein; structural genomics,	98.92
1yg0_A		66	COP associated protein; open-faced beta-sandwich,	98.91
3iwl_A		68	Copper transport protein ATOX1; beta-alpha-beta-BE	98.9
1opz_A		76	Potential copper-transporting ATPase; mutation, fo	98.89
1yjr_A		75	Copper-transporting ATPase 1; metallochaperone, pr	98.89
2ldi_A		71	Zinc-transporting ATPase; metal homeostasis, metal	98.88
1jww_A		80	Potential copper-transporting ATPase; beta-alpha-b	98.87
2kkh_A		95	Putative heavy metal transporter; zinc transport,	98.86
2ofg_X		111	Zinc-transporting ATPase; ferredoxin-like fold, be	98.8
4a4j_A		69	Pacszia, cation-transporting ATPase PACS; hydrolas	98.74
1cc8_A		73	Protein (metallochaperone ATX1); copper transport,	98.72
1qup_A		222	Superoxide dismutase 1 copper chaperone; two domai	98.71
3dxs_X		74	Copper-transporting ATPase RAN1; CXXC motif, ferre	98.69
2aj0_A		71	Probable cadmium-transporting ATPase; ferrodoxin-l	98.61
1jk9_B		249	CCS, copper chaperone for superoxide dismutase; pr	98.6
3fry_A		73	Probable copper-exporting P-type ATPase A; transpo	98.59
2ew9_A		149	Copper-transporting ATPase 2; copper trafficking,	98.55
2crl_A		98	Copper chaperone for superoxide dismutase; SOD1, f	98.53
2roe_A		66	Heavy metal binding protein; NMR {Thermus thermoph	98.53
2ofg_X		111	Zinc-transporting ATPase; ferredoxin-like fold, be	98.51
2xmm_A		64	SSR2857 protein, ATX1; metal transport, copper hom	98.5
2kt2_A		69	Mercuric reductase; nmera, MERA, HMA domain, mercu	98.41
2g9o_A		90	Copper-transporting ATPase 1; menkes disease, solu	98.4
1cpz_A		68	Protein (COPZ); copper chaperone, metal transport,	98.38
2k2p_A		85	Uncharacterized protein ATU1203; putative metal-bi	98.38
2xmw_A		71	PACS-N, cation-transporting ATPase PACS; hydrolase	98.37
1osd_A		72	MERP, hypothetical protein MERP; mercury resistanc	98.36
1aw0_A		72	Menkes copper-transporting ATPase; copper-binding	98.35
2l3m_A		71	Copper-ION-binding protein; structural genomics, c	98.35
1yg0_A		66	COP associated protein; open-faced beta-sandwich,	98.35
3cjk_B		75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	98.33
1mwy_A		73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	98.31
2qif_A		69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	98.29
2rop_A		202	Copper-transporting ATPase 2; wilson protein, mobi	98.28
2kyz_A		67	Heavy metal binding protein; structural genomics,	98.27
1q8l_A		84	Copper-transporting ATPase 1; metal binding protei	98.26
1kvi_A		79	Copper-transporting ATPase 1; menkes, Cu-protein,	98.25
1fvq_A		72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	98.22
1p6t_A		151	Potential copper-transporting ATPase; COPA, P-type	98.22
1yjr_A		75	Copper-transporting ATPase 1; metallochaperone, pr	98.21
1y3j_A		77	Copper-transporting ATPase 1; ferrodoxin-like fold	98.18
1opz_A		76	Potential copper-transporting ATPase; mutation, fo	98.16
2ldi_A		71	Zinc-transporting ATPase; metal homeostasis, metal	98.15
1qup_A		222	Superoxide dismutase 1 copper chaperone; two domai	98.14
1jww_A		80	Potential copper-transporting ATPase; beta-alpha-b	98.1
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	98.07
2kkh_A		95	Putative heavy metal transporter; zinc transport,	98.03
1jk9_B		249	CCS, copper chaperone for superoxide dismutase; pr	97.97
2aj0_A		71	Probable cadmium-transporting ATPase; ferrodoxin-l	97.87
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	97.26

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}	Back alignment and structure

Probab=99.75  E-value=2e-17  Score=133.07  Aligned_cols=130  Identities=22%  Similarity=0.393  Sum_probs=107.7

Q ss_pred             CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC--CChHHHHHHHhhccCCcccccCCCCCCCchhHHHhhhcCC
Q 023785            1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKA   78 (277)
Q Consensus         1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~--~~~~~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~~~~~~~   78 (277)
                      |+|.+|+..|++.|..++||..+.+++.++++.|....  +++..+...|.. +||.+.++....               
T Consensus        13 m~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~-~G~~~~~~~~~~---------------   76 (149)
T 2ew9_A           13 MTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQD-LGFEAAVMEDYA---------------   76 (149)
T ss_dssp             CCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHH-HTCEEEECSCSC---------------
T ss_pred             eecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhc-CCCceEeecccc---------------
Confidence            89999999999999999999999999999999986422  366788888886 599875432100               


Q ss_pred             CCCCCcCCCCCceEEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc---CCChHHHHHHHHHhcCCcE
Q 023785           79 PPKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHA  154 (277)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~---~~~~~~l~~~l~k~~G~~a  154 (277)
                                .....+.|.| ||+|.+|+.+|+++|.+++||.++.+|+.+++++|.+   .++.+.|...| .++||.+
T Consensus        77 ----------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i-~~~Gy~~  145 (149)
T 2ew9_A           77 ----------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKII-EEIGFHA  145 (149)
T ss_dssp             ----------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHH-HHHTCEE
T ss_pred             ----------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHH-HhCCCce
Confidence                      0123578999 9999999999999999999999999999999999974   36789999999 5899987


Q ss_pred             EEe
Q 023785          155 VIV  157 (277)
Q Consensus       155 ~~v  157 (277)
                      .++
T Consensus       146 ~~~  148 (149)
T 2ew9_A          146 SLA  148 (149)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            653

PyMOL of 2ew9

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A	Back alignment and structure

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}	Back alignment and structure

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A	Back alignment and structure

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A	Back alignment and structure

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0	Back alignment and structure

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}	Back alignment and structure

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A	Back alignment and structure

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A	Back alignment and structure

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A	Back alignment and structure

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A	Back alignment and structure

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A	Back alignment and structure

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A	Back alignment and structure

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A	Back alignment and structure

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A	Back alignment and structure

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A	Back alignment and structure

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}	Back alignment and structure

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A	Back alignment and structure

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A	Back alignment and structure

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B	Back alignment and structure

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}	Back alignment and structure

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A	Back alignment and structure

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1	Back alignment and structure

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A	Back alignment and structure

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A	Back alignment and structure

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}	Back alignment and structure

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}	Back alignment and structure

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A	Back alignment and structure

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A	Back alignment and structure

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A	Back alignment and structure

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}	Back alignment and structure

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A	Back alignment and structure

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}	Back alignment and structure

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A	Back alignment and structure

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A	Back alignment and structure

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1	Back alignment and structure

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0	Back alignment and structure

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A	Back alignment and structure

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1	Back alignment and structure

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}	Back alignment and structure

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}	Back alignment and structure

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A	Back alignment and structure

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A	Back alignment and structure

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A	Back alignment and structure

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A	Back alignment and structure

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1	Back alignment and structure

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}	Back alignment and structure

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A	Back alignment and structure

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A	Back alignment and structure

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A	Back alignment and structure

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}	Back alignment and structure

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}	Back alignment and structure

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A	Back alignment and structure

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A	Back alignment and structure

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A	Back alignment and structure

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}	Back alignment and structure

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}	Back alignment and structure

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A	Back alignment and structure

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A	Back alignment and structure

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B	Back alignment and structure

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A	Back alignment and structure

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A	Back alignment and structure

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A	Back alignment and structure

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A	Back alignment and structure

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}	Back alignment and structure

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1	Back alignment and structure

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}	Back alignment and structure

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1	Back alignment and structure

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		277
d1qupa2		72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	1e-11
d1qupa2		72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	2e-07
d1fe0a_		66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	4e-08
d1fe0a_		66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	2e-06
d1cc8a_		72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	5e-08
d1cc8a_		72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	5e-05
d1mwza_		73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	8e-07
d1mwza_		73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	3e-04
d1sb6a_		64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	3e-06
d1sb6a_		64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	2e-05
d1osda_		72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	4e-06
d1osda_		72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	4e-06
d2ggpb1		72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	7e-06
d2ggpb1		72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	3e-05
d2aw0a_		72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-05
d2aw0a_		72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-05
d1kvja_		79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-05
d1kvja_		79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	2e-05
d1p6ta1		72	d.58.17.1 (A:1-72) Potential copper-translocating	2e-05
d1p6ta1		72	d.58.17.1 (A:1-72) Potential copper-translocating	2e-05
d2qifa1		69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	4e-05
d2qifa1		69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	2e-04
d1cpza_		68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	4e-05
d1cpza_		68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	7e-05
d1p6ta2		79	d.58.17.1 (A:73-151) Potential copper-translocatin	9e-05
d1p6ta2		79	d.58.17.1 (A:73-151) Potential copper-translocatin	9e-04
d1q8la_		84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	6e-04

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 94  VVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKH 153
               + MHCE C  +IK  +  + G+ S   D++   ++V+    P  +++ + +  GK 
Sbjct: 8   ATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL-RNCGKD 66

Query: 154 AVI 156
           A+I
Sbjct: 67  AII 69

PyMOL of d1qupa2

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72	Back information, alignment and structure

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66	Back information, alignment and structure

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66	Back information, alignment and structure

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72	Back information, alignment and structure

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72	Back information, alignment and structure

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73	Back information, alignment and structure

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73	Back information, alignment and structure

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64	Back information, alignment and structure

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64	Back information, alignment and structure

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72	Back information, alignment and structure

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72	Back information, alignment and structure

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72	Back information, alignment and structure

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72	Back information, alignment and structure

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72	Back information, alignment and structure

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72	Back information, alignment and structure

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72	Back information, alignment and structure

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72	Back information, alignment and structure

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69	Back information, alignment and structure

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69	Back information, alignment and structure

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68	Back information, alignment and structure

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68	Back information, alignment and structure

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79	Back information, alignment and structure

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79	Back information, alignment and structure

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		277
d1qupa2		72	Copper chaperone for superoxide dismutase, N-termi	99.51
d1fe0a_		66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.5
d2ggpb1		72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.47
d1cc8a_		72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.46
d1sb6a_		64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.43
d1osda_		72	Mercuric ion binding protein MerP {Ralstonia metal	99.42
d1cpza_		68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.42
d2aw0a_		72	Menkes copper-transporting ATPase {Human (Homo sap	99.4
d1q8la_		84	Menkes copper-transporting ATPase {Human (Homo sap	99.38
d2qifa1		69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.37
d1kvja_		79	Menkes copper-transporting ATPase {Human (Homo sap	99.37
d1p6ta2		79	Potential copper-translocating P-type ATPase CopA	99.34
d1p6ta1		72	Potential copper-translocating P-type ATPase CopA	99.32
d1mwza_		73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.28
d1qupa2		72	Copper chaperone for superoxide dismutase, N-termi	99.13
d1fe0a_		66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.1
d1cpza_		68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.04
d1cc8a_		72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.03
d1sb6a_		64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	98.98
d2ggpb1		72	Copper transporter domain ccc2a {Baker's yeast (Sa	98.98
d2aw0a_		72	Menkes copper-transporting ATPase {Human (Homo sap	98.96
d1osda_		72	Mercuric ion binding protein MerP {Ralstonia metal	98.92
d1kvja_		79	Menkes copper-transporting ATPase {Human (Homo sap	98.91
d2qifa1		69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	98.89
d1mwza_		73	Metal ion-transporting ATPase ZntA, N-terminal dom	98.85
d1q8la_		84	Menkes copper-transporting ATPase {Human (Homo sap	98.84
d1p6ta1		72	Potential copper-translocating P-type ATPase CopA	98.83
d1p6ta2		79	Potential copper-translocating P-type ATPase CopA	98.81

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=3.6e-14  Score=100.40  Aligned_cols=66  Identities=24%  Similarity=0.503  Sum_probs=62.1

Q ss_pred             EEEEEeecccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcCCcEEEec
Q 023785           92 IIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVK  158 (277)
Q Consensus        92 ~~~~l~Vgm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G~~a~~v~  158 (277)
                      ..++|.|+|+|++|+.+|+++|.+++||.++.+|+.+++++|.+.++++.|++.| +++||+|.+..
T Consensus         6 ~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I-~~~G~~A~l~g   71 (72)
T d1qupa2           6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL-RNCGKDAIIRG   71 (72)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHH-HHTTCCCEEEC
T ss_pred             EEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHH-HHhCCCEEEec
Confidence            4678999999999999999999999999999999999999999999999999999 58999998864

PyMOL of d1qupa2

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}	Back information, alignment and structure

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}	Back information, alignment and structure

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}	Back information, alignment and structure

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}	Back information, alignment and structure

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}	Back information, alignment and structure

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}	Back information, alignment and structure

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}	Back information, alignment and structure

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}	Back information, alignment and structure

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}	Back information, alignment and structure

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}	Back information, alignment and structure

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure