Citrus Sinensis ID: 023800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV
Secondary Structure (PSIPRED)
cEEEEHHHHHHHcccEEEEEEEccccEEEEEcccEEEEccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHccccccEEcccEEcccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEcccEEEccccHHHHccccccEEEEccccHHHHHHHcHHHHHHHHHHHHHccccEEEEEccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHHHHHHcccEEEEEEEcccEEEEEcccEEEEcccHHHHHccccccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHcccEEEEcccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccEEcccccEEcccEEHHHHHHccccEEEEccccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNcrdacgmpgatnlkeSEVLESIVKKQASDGRLYAAICVFLAVALGSwgllkglkdgkvvttrgpgtpMEFVVALVEQLYgkgkadevsgarvmranhgdeftiaefnpvqwtfdnspqilvpiangseeMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLivlpgglggaQAFAKSKKLVNMLKKqkesnrpygaicaspalvlephgllkv
Flexible Loop (DISEMBL)
meavitidvlrrsgadVVVASVEKqlrvdachGVKIVADALVSNCRDACGMPgatnlkeseVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGaicaspalvlephgllkv
Low Complexity Region (SEG)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV
Disordered region (IsUnstruct)
***VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN***********YGAICASPALVL********
Disordered Region (DISOPRED)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV
Disordered Region (DISEMBL)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV
Disordered Region (DISPRO)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q9MAH3	438	Protein DJ-1 homolog B OS	yes	no	0.996	0.630	0.629	1e-103
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.996	0.704	0.556	2e-87
Q8VY09	472	Protein DJ-1 homolog C OS	no	no	0.989	0.580	0.429	5e-64
Q46948	196	Chaperone protein YajL OS	N/A	no	0.425	0.602	0.458	8e-18
P55880	196	Chaperone protein YajL OS	yes	no	0.425	0.602	0.475	4e-14
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.498	0.730	0.337	3e-13
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.397	0.582	0.410	6e-13
O88767	189	Protein DJ-1 OS=Rattus no	yes	no	0.397	0.582	0.414	2e-12
Q5E946	189	Protein DJ-1 OS=Bos tauru	yes	no	0.397	0.582	0.405	2e-12
Q99LX0	189	Protein DJ-1 OS=Mus muscu	yes	no	0.498	0.730	0.331	2e-12

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/308 (62%), Positives = 228/308 (74%), Gaps = 32/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 66  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+A G+WGLL+G K              
Sbjct: 126 GGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLAAC 185

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI 
Sbjct: 186 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTIT 245

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+F+ +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VK
Sbjct: 246 ELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVK 305

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 306 LVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 365

Query: 269 LEPHGLLK 276
            EPHGLLK
Sbjct: 366 FEPHGLLK 373

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/309 (55%), Positives = 219/309 (70%), Gaps = 33/309 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAV  I VLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 19  LEAVAMITVLRRGGADVTVASVETQVGVDACHGIKMVADTLLSDITDSVFDLIVLPGGLP 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE++VKKQ SDGRL AAIC   A+ALG+WGLL+G K              
Sbjct: 79  GGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAAT 138

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      DG++VT+RGPGT +EF + L+EQL+GK KADEVS   ++R N G+EFT 
Sbjct: 139 CATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTF 198

Query: 148 AEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207
            E N   W+F+++PQILVPIA  SEE+EA+ ++DILRRAKANVV+A+V + LE+  S + 
Sbjct: 199 TELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANVVIAAVGNSLEVEGSRKA 258

Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           KLVA++L+DE A+ S+DLIVLPGGL GAQ FA  +KLVNML+KQ E+N+PYG ICASPA 
Sbjct: 259 KLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAY 318

Query: 268 VLEPHGLLK 276
           V EP+GLLK
Sbjct: 319 VFEPNGLLK 327

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 187/307 (60%), Gaps = 33/307 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAV+ +DVLRR+GADV VASVE++L V+   G +++AD L+S C D          GMP
Sbjct: 97  IEAVVLVDVLRRAGADVTVASVEQKLEVEGSSGTRLLADVLISKCADQVYDLVALPGGMP 156

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++ E+LE I+K+QA D RLY AI +  A+ L  WGLL   +              
Sbjct: 157 GAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHPAFFGKLPTF 216

Query: 99  ---------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAE 149
                     G++ T+RGPGT  +F ++L EQL+G+  A  +    ++R  + +     E
Sbjct: 217 WAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLLRDGYQNPKN-KE 275

Query: 150 FNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKL 209
           FN + W+ D++P++L+P+ANGSE +E V I D+LRRAK +V V+SV   L I A    K+
Sbjct: 276 FNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERSLRITAFQGTKI 335

Query: 210 VADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           + D LI EAA+ SYDLI+LPGG  G++   KSK L  +L++Q ES R YGA  +S + VL
Sbjct: 336 ITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIYGATNSS-STVL 394

Query: 270 EPHGLLK 276
             HGLLK
Sbjct: 395 HKHGLLK 401

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q46948|YAJL_ECOLI Chaperone protein YajL OS=Escherichia coli (strain K12) GN=yajL PE=1 SV=2

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 2/120 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    +  +C   VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +  +
Sbjct: 62  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121

Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone. Interacts with ribosomal subunits, ribosomes and polysomes. Confers resistance to oxidative stress.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P55880|YAJL_SALTY Chaperone protein YajL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yajL PE=3 SV=2

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDE 217
           S Q LV +A GSEE EAV  ID+L R   +V  ASVA    L I+ S  VKL+AD  + E
Sbjct: 2   SAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+ A VL PH +  +
Sbjct: 62  VADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPI 121

Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 34/172 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
           ME VI +D++RR+G  V VA +  +  V     V I  D  + + +     D   +PG  
Sbjct: 17  METVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGPYDVVVLPGGN 76

Query: 54  --ATNLKESEVLESIVKKQASDGRLYAAICV----FLAVALG------------------ 89
             A NL ES V++ I+K+Q S   L AAIC      LA  +G                  
Sbjct: 77  LGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALLAHEIGFGSKVTTHPGAKDKMMNG 136

Query: 90  ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
              S+   +  KDG ++T+RGPGT  EF +A+VE L GK  AD+V    V++
Sbjct: 137 SHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPLVLK 188

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS- 222
           LV +A G+EEME VI +D++RRA   V VA +A K  +  S +V +  D  +++A K   
Sbjct: 7   LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGP 66

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
           YD+++LPGGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+
Sbjct: 67  YDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGI 117

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O88767|PARK7_RAT Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA- 218
           S + LV +A G+EEME VI +DI+RRA   V VA +A K  +  S  V +  D  ++EA 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAK 62

Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
            +  YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  TQGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPTALL 113

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5E946|PARK7_BOVIN Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 1/111 (0%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q++      AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALL 113

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99LX0|PARK7_MOUSE Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 34/172 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
           ME VI +DV+RR+G  V VA +  +  V     V I  D  + + +     D   +PG  
Sbjct: 17  METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGN 76

Query: 54  --ATNLKESEVLESIVKKQASDGRLYAAICV----FLAVALG------------------ 89
             A NL ES +++ I+K+Q S   L AAIC      LA  +G                  
Sbjct: 77  LGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLAHEVGFGCKVTTHPLAKDKMMNG 136

Query: 90  ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
              S+   +  KDG ++T+RGPGT  EF +A+VE L GK  A++V    V++
Sbjct: 137 SHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVLK 188

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
224114830	442	predicted protein [Populus trichocarpa]	0.996	0.624	0.695	1e-117
449438931	434	PREDICTED: uncharacterized protein LOC10	0.996	0.635	0.685	1e-113
225461638	478	PREDICTED: uncharacterized protein LOC10	0.992	0.575	0.698	1e-112
302142910	393	unnamed protein product [Vitis vinifera]	0.992	0.699	0.698	1e-112
297853104	437	DJ-1 family protein [Arabidopsis lyrata	0.996	0.631	0.639	1e-102
18404397	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.996	0.630	0.629	1e-101
312282985	391	unnamed protein product [Thellungiella h	0.996	0.705	0.616	1e-101
21536528	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.996	0.630	0.626	1e-100
147775474	427	hypothetical protein VITISV_008479 [Viti	0.898	0.583	0.652	1e-98
356544078	435	PREDICTED: uncharacterized protein LOC10	0.996	0.634	0.647	2e-98

>gi|224114830|ref|XP_002316868.1| predicted protein [Populus trichocarpa] gi|222859933|gb|EEE97480.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/309 (69%), Positives = 244/309 (78%), Gaps = 33/309 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAVITIDVLRR GADV VAS+EKQ+RVDA + VK+VAD+L+S C DA         G+P
Sbjct: 66  IEAVITIDVLRRGGADVTVASIEKQIRVDATYDVKLVADSLLSECSDAVFDLITLPGGIP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GATN K  ++LE +VKKQ  DG+LYAA+C   AVA GSWGLL GLK              
Sbjct: 126 GATNFKNCQLLEKLVKKQVEDGKLYAAVCASPAVAFGSWGLLNGLKATCHPFFMDELKSS 185

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      +G VVT+RGPGT MEF VALVE+L+GK KADEVSG  VMR+NHGDE++I
Sbjct: 186 GAITVESRVHEEGNVVTSRGPGTTMEFAVALVEKLFGKEKADEVSGPLVMRSNHGDEYSI 245

Query: 148 AEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207
            E NP+QWTFDN PQ+LVPIANG+EEMEA+IIIDILRRAK NVVVASV D LEILAS +V
Sbjct: 246 KELNPMQWTFDNVPQVLVPIANGTEEMEAIIIIDILRRAKVNVVVASVEDSLEILASRKV 305

Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           KL ADML+DEAAKLSYDLIVLPGGLGGAQAFAKS+KLVNMLKKQ+ESNRPYGA+CASPAL
Sbjct: 306 KLEADMLLDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQRESNRPYGAMCASPAL 365

Query: 268 VLEPHGLLK 276
           VLEPHGLLK
Sbjct: 366 VLEPHGLLK 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438931|ref|XP_004137241.1| PREDICTED: uncharacterized protein LOC101212934 [Cucumis sativus] gi|449483151|ref|XP_004156507.1| PREDICTED: uncharacterized protein LOC101228984 [Cucumis sativus]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/308 (68%), Positives = 246/308 (79%), Gaps = 32/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAVITIDVLRR+GADV VASVE  +RVDA H +KIVAD+L+S+C D          GMP
Sbjct: 59  LEAVITIDVLRRAGADVTVASVENHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMP 118

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GAT+L++  VLE+IVKKQA+DGRLYAAIC   AV LGSWGLLKGLK              
Sbjct: 119 GATSLRDCAVLENIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLEST 178

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DG+VVT+RGPGT +EF VALV+QLYGK KADEVSG  ++R+NHG E+TIA
Sbjct: 179 ATAVESRVQIDGQVVTSRGPGTTLEFAVALVDQLYGKEKADEVSGPLLLRSNHGHEYTIA 238

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V+WTFD+ P+ILVPIA+G+EEMEAV+IIDILRRAK  VVVASV D LEILAS +VK
Sbjct: 239 EQNQVKWTFDDGPRILVPIASGTEEMEAVMIIDILRRAKGKVVVASVEDTLEILASRKVK 298

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           L AD+L+DEAA+ SYDLIVLPGGLGGA+AFAKS+KLVN+LKKQ+ESN+PYGAICASPALV
Sbjct: 299 LEADLLLDEAAEQSYDLIVLPGGLGGAEAFAKSEKLVNLLKKQRESNKPYGAICASPALV 358

Query: 269 LEPHGLLK 276
           LEPHGLLK
Sbjct: 359 LEPHGLLK 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461638|ref|XP_002283063.1| PREDICTED: uncharacterized protein LOC100253735 [Vitis vinifera]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 243/308 (78%), Gaps = 33/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVI IDVLRR+GADV VASVEK+L+VDACHGVKIVADAL+S+C D          GMP
Sbjct: 104 MEAVIIIDVLRRAGADVTVASVEKRLQVDACHGVKIVADALISDCADTGFDLISLPGGMP 163

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++  +LES+VKK A+DG+LYA IC   AVALGSWGL+KGLK              
Sbjct: 164 GAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSST 223

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGKVVT+RGPGT MEF V+LVEQLYGK KA+EVSG  VM +N GD+F +A
Sbjct: 224 ATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVMCSNLGDKFIMA 283

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E NP+ W  DN PQILVPIANG+EEMEAVIIID LRRAKANVVVASV DKLEI+AS +VK
Sbjct: 284 ELNPIDWKCDN-PQILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVK 342

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA KLSYDLIVLPGGLGGAQAFA S+KLVN+LK Q+ESN+PYGAICASPALV
Sbjct: 343 LVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALV 402

Query: 269 LEPHGLLK 276
           LEPHGLLK
Sbjct: 403 LEPHGLLK 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142910|emb|CBI20205.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 243/308 (78%), Gaps = 33/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVI IDVLRR+GADV VASVEK+L+VDACHGVKIVADAL+S+C D          GMP
Sbjct: 19  MEAVIIIDVLRRAGADVTVASVEKRLQVDACHGVKIVADALISDCADTGFDLISLPGGMP 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++  +LES+VKK A+DG+LYA IC   AVALGSWGL+KGLK              
Sbjct: 79  GAATLRDCGMLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSST 138

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGKVVT+RGPGT MEF V+LVEQLYGK KA+EVSG  VM +N GD+F +A
Sbjct: 139 ATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYGKEKANEVSGPLVMCSNLGDKFIMA 198

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E NP+ W  DN PQILVPIANG+EEMEAVIIID LRRAKANVVVASV DKLEI+AS +VK
Sbjct: 199 ELNPIDWKCDN-PQILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVK 257

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA KLSYDLIVLPGGLGGAQAFA S+KLVN+LK Q+ESN+PYGAICASPALV
Sbjct: 258 LVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALV 317

Query: 269 LEPHGLLK 276
           LEPHGLLK
Sbjct: 318 LEPHGLLK 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853104|ref|XP_002894433.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297340275|gb|EFH70692.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/308 (63%), Positives = 227/308 (73%), Gaps = 32/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S   D+         G+P
Sbjct: 65  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSEITDSVFDLIMLPGGLP 124

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+ALG+WGLL+G K              
Sbjct: 125 GGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALALGTWGLLEGKKATCYPVFMEKLAAC 184

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+T+ 
Sbjct: 185 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAAEVSGPLVMRPNPGDEYTLT 244

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+FD +PQILVPIANGSEEMEAV IID+LRRAKANVVVA++ D LE++AS +VK
Sbjct: 245 ELNQVNWSFDGTPQILVPIANGSEEMEAVAIIDVLRRAKANVVVAALGDSLEVVASRKVK 304

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+ +DEA K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 305 LVADVRLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 364

Query: 269 LEPHGLLK 276
            EPHGLLK
Sbjct: 365 FEPHGLLK 372

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404397|ref|NP_564626.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gi|7769869|gb|AAF69547.1|AC008007_22 F12M16.18 [Arabidopsis thaliana] gi|15810459|gb|AAL07117.1| unknown protein [Arabidopsis thaliana] gi|20259561|gb|AAM14123.1| unknown protein [Arabidopsis thaliana] gi|332194795|gb|AEE32916.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/308 (62%), Positives = 228/308 (74%), Gaps = 32/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 66  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+A G+WGLL+G K              
Sbjct: 126 GGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLAAC 185

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI 
Sbjct: 186 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTIT 245

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+F+ +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VK
Sbjct: 246 ELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVK 305

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 306 LVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 365

Query: 269 LEPHGLLK 276
            EPHGLLK
Sbjct: 366 FEPHGLLK 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282985|dbj|BAJ34358.1| unnamed protein product [Thellungiella halophila]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/308 (61%), Positives = 231/308 (75%), Gaps = 32/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GA+V VASVE Q+ VD CHG+K+VAD L+S+  D+         G+P
Sbjct: 19  FEAVVMIDVLRRGGAEVTVASVENQVGVDVCHGIKMVADTLLSDVTDSVFDLIMLPGGLP 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE++VKKQ +DGRL AAIC   A+ALG+WGLL+G K              
Sbjct: 79  GGETLKNCKALENMVKKQETDGRLNAAICCAPALALGTWGLLEGKKATCYPVFMEKLATC 138

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DG++VT+RGPGT MEF V LVEQL+GK KA EVSG  VMR N GDE+TI 
Sbjct: 139 ATAVESRVEIDGRIVTSRGPGTTMEFSVTLVEQLFGKEKAAEVSGPLVMRPNPGDEYTIT 198

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N + W+FD++PQILVPIA+GSEEMEAV IID+LRRAKANVVVA++ + LE++AS +VK
Sbjct: 199 ELNQMNWSFDSTPQILVPIADGSEEMEAVAIIDVLRRAKANVVVAALGNNLEVVASRKVK 258

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K +YDLIVLPGGLGGA+AFA S+KLV+MLK+Q ESN+PYGAICASPALV
Sbjct: 259 LVADVLLDEAEKNTYDLIVLPGGLGGAEAFASSEKLVDMLKRQAESNKPYGAICASPALV 318

Query: 269 LEPHGLLK 276
            EPHGLLK
Sbjct: 319 FEPHGLLK 326

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536528|gb|AAM60860.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/308 (62%), Positives = 227/308 (73%), Gaps = 32/308 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
            EAV+ IDVLRR GADV VASVE Q+ VDACHG+K+VAD L+S+  D+         G+P
Sbjct: 66  FEAVVMIDVLRRGGADVTVASVENQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLP 125

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G   LK  + LE +VKKQ +DGRL AAIC   A+A G+WGLL+G K              
Sbjct: 126 GGETLKNCKPLERMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLAAC 185

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI 
Sbjct: 186 ATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTIT 245

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
           E N V W+F+ +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VK
Sbjct: 246 ELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVK 305

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA K  YDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV
Sbjct: 306 LVADVLLDEAEKNLYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALV 365

Query: 269 LEPHGLLK 276
            EPHGLLK
Sbjct: 366 FEPHGLLK 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775474|emb|CAN62882.1| hypothetical protein VITISV_008479 [Vitis vinifera]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/308 (65%), Positives = 223/308 (72%), Gaps = 59/308 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVI IDVLRR+GADV VASVEKQL+VDACHGVKIVADAL+S+C D          GMP
Sbjct: 55  MEAVIIIDVLRRAGADVTVASVEKQLQVDACHGVKIVADALISDCADTGFDLISLPGGMP 114

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA  L++   LES+VKK A+DG+LYA IC   AVALGSWGL+KGLK              
Sbjct: 115 GAATLRDCGXLESMVKKHAADGQLYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLSST 174

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIA 148
                     DGKVVT+RGPGT MEF V+LVEQLY K KA+EVSG               
Sbjct: 175 ATTVESRVQQDGKVVTSRGPGTTMEFSVSLVEQLYAKEKANEVSG--------------- 219

Query: 149 EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVK 208
                       P ILVPIANG+EEMEAVIIID LRRAKANVVVASV DKLEI+AS +VK
Sbjct: 220 ------------PLILVPIANGTEEMEAVIIIDFLRRAKANVVVASVEDKLEIVASRKVK 267

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           LVAD+L+DEA KLSYDLIVLPGGLGGAQAFA S+KLVN+LK Q+ESN+PYGAICASPALV
Sbjct: 268 LVADVLLDEAVKLSYDLIVLPGGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALV 327

Query: 269 LEPHGLLK 276
           LEPHGLLK
Sbjct: 328 LEPHGLLK 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544078|ref|XP_003540482.1| PREDICTED: uncharacterized protein LOC100803116 [Glycine max]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/309 (64%), Positives = 222/309 (71%), Gaps = 33/309 (10%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           MEAVITIDVLRRSGADV VAS    L V A HGVKI+ADA V +             G+ 
Sbjct: 59  MEAVITIDVLRRSGADVTVASASDNLAVQALHGVKIIADAPVRDVAATSFDLVALPGGLQ 118

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           G  NL++ +VLE +VKK   DGRLYAA+C   AV LG WGLL G K              
Sbjct: 119 GVENLRDCKVLEGLVKKHVEDGRLYAAVCAAPAVVLGPWGLLNGKKATCYPALMEKLAAY 178

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      DG+VVT+R PGT MEF + L+EQL GK KADEV+G  VM +NH DE T 
Sbjct: 179 AAATSESRVQVDGRVVTSRAPGTTMEFAITLIEQLIGKEKADEVAGPLVMHSNHDDEHTF 238

Query: 148 AEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207
            EFNPVQWT DN P+ILVPIANGSEEMEAVIIIDILRRAKA VVVASV DKLEI+AS +V
Sbjct: 239 KEFNPVQWTSDNPPKILVPIANGSEEMEAVIIIDILRRAKAKVVVASVEDKLEIVASRKV 298

Query: 208 KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           KL ADML+DEAAKLSYDLIVLPGGLGGAQ FA S+ LV++LKKQ+ESN  YGAICASPAL
Sbjct: 299 KLEADMLLDEAAKLSYDLIVLPGGLGGAQTFANSETLVSLLKKQRESNIYYGAICASPAL 358

Query: 268 VLEPHGLLK 276
           VLEPHGLLK
Sbjct: 359 VLEPHGLLK 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.642	0.406	0.752	5.4e-94
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.642	0.454	0.623	6.4e-85
TAIR|locus:2124246	472	DJ1C "DJ-1 homolog C" [Arabido	0.664	0.389	0.438	2.9e-60
UNIPROTKB|Q9KPQ8	205	VC_2308 "4-methyl-5(B-hydroxye	0.393	0.531	0.467	1.7e-20
TIGR_CMR|VC_2308	205	VC_2308 "4-methyl-5(B-hydroxye	0.393	0.531	0.467	1.7e-20
GENEDB_PFALCIPARUM|PFF1335c	189	PFF1335c "4-methyl-5(B-hydroxy	0.404	0.592	0.383	2.5e-19
UNIPROTKB|Q46948	196	yajL "chaperone, protecting pr	0.425	0.602	0.458	8.3e-19
ZFIN|ZDB-GENE-041010-5	189	park7 "parkinson disease (auto	0.397	0.582	0.410	1.3e-15
FB|FBgn0039802	205	dj-1beta "dj-1beta" [Drosophil	0.411	0.556	0.382	1.6e-15
UNIPROTKB|Q7TQ35	189	PARK7 "Protein DJ-1" [Mesocric	0.397	0.582	0.414	2.6e-15

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
 Identities = 134/178 (75%), Positives = 154/178 (86%)

Query:    99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFD 158
             DGK+VT+RGPGT MEF V LVEQL GK KA EVSG  VMR N GDE+TI E N V W+F+
Sbjct:   196 DGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVMRPNPGDEYTITELNQVSWSFE 255

Query:   159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA 218
              +PQILVPIA+GSEEMEAV IID+L+RAKANVVVA++ + LE++AS +VKLVAD+L+DEA
Sbjct:   256 GTPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNSLEVVASRKVKLVADVLLDEA 315

Query:   219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
              K SYDLIVLPGGLGGA+AFA S+KLVNMLKKQ ESN+PYGAICASPALV EPHGLLK
Sbjct:   316 EKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLK 373

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 111/178 (62%), Positives = 144/178 (80%)

Query:    99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFD 158
             DG++VT+RGPGT +EF + L+EQL+GK KADEVS   ++R N G+EFT  E N   W+F+
Sbjct:   150 DGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTFTELNQTNWSFE 209

Query:   159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA 218
             ++PQILVPIA  SEE+EA+ ++DILRRAKANVV+A+V + LE+  S + KLVA++L+DE 
Sbjct:   210 DTPQILVPIAEESEEIEAIALVDILRRAKANVVIAAVGNSLEVEGSRKAKLVAEVLLDEV 269

Query:   219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
             A+ S+DLIVLPGGL GAQ FA  +KLVNML+KQ E+N+PYG ICASPA V EP+GLLK
Sbjct:   270 AEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLK 327

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2124246 DJ1C "DJ-1 homolog C" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 82/187 (43%), Positives = 121/187 (64%)

Query:    91 WGLLKGLK-DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAE 149
             W +   ++  G++ T+RGPGT  +F ++L EQL+G+  A  +    ++R  + +     E
Sbjct:   217 WAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLLRDGYQNPKN-KE 275

Query:   150 FNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKL 209
             FN + W+ D++P++L+P+ANGSE +E V I D+LRRAK +V V+SV   L I A    K+
Sbjct:   276 FNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRAKVDVTVSSVERSLRITAFQGTKI 335

Query:   210 VADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
             + D LI EAA+ SYDLI+LPGG  G++   KSK L  +L++Q ES R YGA  +S + VL
Sbjct:   336 ITDKLIGEAAESSYDLIILPGGHTGSERLQKSKILKKLLREQHESGRIYGATNSS-STVL 394

Query:   270 EPHGLLK 276
               HGLLK
Sbjct:   395 HKHGLLK 401

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9KPQ8 VC_2308 "4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/109 (46%), Positives = 73/109 (66%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S +ILVP+A+GSEEME VII+D L RA   V +A+V DKL++  S  V L A+  ++  +
Sbjct:     6 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACS 65

Query:   220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
               ++D + LPGG+GGAQAFA S  L+ ++    +  +   AICA+PALV
Sbjct:    66 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALV 114

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2308 VC_2308 "4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/109 (46%), Positives = 73/109 (66%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S +ILVP+A+GSEEME VII+D L RA   V +A+V DKL++  S  V L A+  ++  +
Sbjct:     6 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACS 65

Query:   220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
               ++D + LPGG+GGAQAFA S  L+ ++    +  +   AICA+PALV
Sbjct:    66 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALV 114

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GENEDB_PFALCIPARUM|PFF1335c PFF1335c "4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme" [Plasmodium falciparum (taxid:5833)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/112 (38%), Positives = 73/112 (65%)

Query:   164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY 223
             LV +A+GSE++E + ++D+LRRA  +V  ASV    ++    +  ++AD  I +     Y
Sbjct:     8 LVAVASGSEDVEYITVVDVLRRAGVHVTTASVEKSEQVCLQSKNVVLADTTISKVRNNIY 67

Query:   224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275
             D++V+PGG+ G+   ++  + ++MLK+QK +NR Y AICA+P  VL+ H L+
Sbjct:    68 DVLVIPGGMKGSNTISECSEFIDMLKEQKANNRLYAAICAAPETVLDRHSLI 119

GO:0009228 "thiamine biosynthetic process" evidence=ISS

UNIPROTKB|Q46948 yajL "chaperone, protecting proteins in response to oxidative stress" [Escherichia coli K-12 (taxid:83333)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 55/120 (45%), Positives = 69/120 (57%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
             S   LV +A GSEE EAV  ID+L R    V  ASVA    +  +C   VKL+AD  + E
Sbjct:     2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61

Query:   218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
              A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +  +
Sbjct:    62 VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121

GO:0042254 "ribosome biogenesis" evidence=IEA;IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042026 "protein refolding" evidence=IDA;IMP

ZFIN|ZDB-GENE-041010-5 park7 "parkinson disease (autosomal recessive, early onset) 7" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 46/112 (41%), Positives = 68/112 (60%)

Query:   164 LVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS- 222
             LV +A G+EEME VI +D++RRA   V VA +A K  +  S +V +  D  +++A K   
Sbjct:     7 LVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGP 66

Query:   223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
             YD+++LPGGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+
Sbjct:    67 YDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGI 117

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

FB|FBgn0039802 dj-1beta "dj-1beta" [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/115 (38%), Positives = 67/115 (58%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S   LV +A G+EEME +I  D+LRRA   V VA +     +  S  V+++ D  + + A
Sbjct:    20 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 79

Query:   220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
                +D++VLPGGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+
Sbjct:    80 SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGV 133

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

UNIPROTKB|Q7TQ35 PARK7 "Protein DJ-1" [Mesocricetus auratus (taxid:10036)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 46/111 (41%), Positives = 66/111 (59%)

Query:   160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
             S + LV +A G+EEME VI +DI+RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct:     3 SKRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAK 62

Query:   220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
             K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct:    63 KQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALL 113

GO:0003729 "mRNA binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAH3	DJ1B_ARATH	No assigned EC number	0.6298	0.9963	0.6301	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	3e-41
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	7e-41
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	1e-36
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	1e-31
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	6e-29
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-16
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	2e-14
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	8e-14
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	1e-11
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	4e-10
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	1e-09
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	6e-06
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	4e-05
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	1e-04
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	5e-04
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	0.002
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	0.003
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	0.004

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  139 bits (352), Expect = 3e-41
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 1/114 (0%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           +LV +A+G EE+EAV  +D+LRRA   V  AS+  KL + +S  +K+ AD  + +     
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDD 60

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
           YD IV+PGGL GAQ  A ++KL+ +LK+     +   AICA+PA++ +  GLLK
Sbjct: 61  YDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK-AGLLK 113

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  138 bits (351), Expect = 7e-41
 Identities = 68/167 (40%), Positives = 85/167 (50%), Gaps = 33/167 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQ--LRVDACHGVKIVADALVSNCRDAC--------G 50
           MEAVIT+DVLRR+G  V VA       L V    GVKI+ADA + +             G
Sbjct: 13  MEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVDLEKFDVIVLPGG 72

Query: 51  MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGL------------- 97
           MPGA NL+ S++L +I+K Q S G+L AAIC   AV L    LL                
Sbjct: 73  MPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLGKKATCYPGFKEKLLN 132

Query: 98  ----------KDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGA 134
                      DG ++T+RGPGT +EF + LVE L GK KA EV+  
Sbjct: 133 GNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  128 bits (323), Expect = 1e-36
 Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASV--ADKLEILASCQVKLVADMLIDEAAK 220
           +LVP+A G EEMEAVI +D+LRRA   V VA      KL +  S  VK++AD  +++   
Sbjct: 2   VLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVKILADASLEDVDL 61

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
             +D+IVLPGG+ GA+    SK L+N+LK Q+   +   AICA+PA++L    LL 
Sbjct: 62  EKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLLG 117

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  114 bits (288), Expect = 1e-31
 Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 32/153 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           +EAV  +DVLRR+G +V  AS+EK+L V + HG+K+ AD  +S+             G+P
Sbjct: 12  IEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLP 71

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA NL ++E L  ++K+  + G+L AAIC      L   GLLKG K              
Sbjct: 72  GAQNLADNEKLIKLLKEFNAKGKLIAAICA-APAVLAKAGLLKGKKATCYPGFEDKLGGA 130

Query: 99  ---------DGKVVTTRGPGTPMEFVVALVEQL 122
                    DG ++T+RGPGT  EF + +VE L
Sbjct: 131 NYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  108 bits (272), Expect = 6e-29
 Identities = 57/120 (47%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    LEI  S  VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
            A   +D+IVLPGG+ GA+ F  S  LV  +++   S R   AICA+PA VL PH L  +
Sbjct: 62  VADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPI 121

Length = 196

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLV--ADMLIDE 217
             +I + +A+G E++E ++  D+LRRA   V VAS   K + + S +  LV   D   D+
Sbjct: 2   MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDD 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
           A    YD +V+PGG  G +       L+  ++    + +P  AIC  PA++     LLK
Sbjct: 62  ADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLK 120

Length = 188

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 35/173 (20%)

Query: 2   EAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDA--------CGM 51
           EAV TID+L R G  V  ASV  +  L +    GVK++ADA +    D          G+
Sbjct: 17  EAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGI 76

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL--------GSWGLLKGLKDG--- 100
            GA   ++S +L   V++    GR+ AAIC   A  L        G+      LKD    
Sbjct: 77  KGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPA 136

Query: 101 --------------KVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRA 139
                          ++T++GPGT ++F + +++ L G+ KA EV+   VM A
Sbjct: 137 EQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAA 189

Length = 196

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 189 NVVVASVADKLEILAS-CQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247
            V V S  D  E+     +VK+ AD  +D+     YD +V+PGG  GA+     +KLV  
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 248 LKKQKESNRPYGAICASPALVLEPHGLLK 276
           +K+  ES +P  AIC  P  VL   GLLK
Sbjct: 61  VKEFYESGKPIAAICHGPV-VLAAAGLLK 88

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 36/142 (25%)

Query: 16  DVVVASVEKQLRVDACHG-VKIVADALVSNCRD--------ACGMPGATNLKESEVLESI 66
           +V V S E    V   +G VK+ AD  + +             G  GA +L++ E L   
Sbjct: 1   EVDVVSPEDGKEVKGKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKF 60

Query: 67  VKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DG 100
           VK+    G+  AAIC    V L + GLLKG +                            
Sbjct: 61  VKEFYESGKPIAAICHGPVV-LAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGN 119

Query: 101 KVVTTRGPGTPMEFVVALVEQL 122
           K+VT+ GPG+  EF + L+E L
Sbjct: 120 KLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           + V +  G EE+E    +D LR A A V V S                   +  +     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDG--------------GPVESDVDLDD 46

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           YD ++LPGG G     A+ + L+ +L++   + +P   IC    L++
Sbjct: 47  YDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLLV 93

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           + V +  GSEE+E    +D LR A A V V S                   +  +     
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDG--------------GPVESDVDLDD 46

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           YD ++LPGG G     A  + L+ +L++   + +P   IC    L
Sbjct: 47  YDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQL 91

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 2   EAVITIDVLRRSGADVVVASVEKQLR-VDACHGVKIVADALVSNCRDAC---------GM 51
           E ++  DVLRR+G +V VAS E + + V +  G  +VAD    +  DA          G 
Sbjct: 17  ELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGD 76

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDG 100
            G   L+    L + V+   ++G+  AAIC   AV   +  LLKG K  
Sbjct: 77  HGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKAT 125

Length = 188

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 167 IANGSEEMEAVIIIDILRRAKA------NVVVASVADKLEILASCQVKLVADMLIDEAAK 220
             +G  E++  I +D+L RA         V + S  D   + +   V +  D  + +A +
Sbjct: 2   TFDGFNELDLAIALDVLNRANRLGGDVFRVRIVSP-DAQPVTSMNGVTITVDAPLADAPE 60

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
              D +++PGG  G +A A    L+  L+    + +  GA+C S AL+L   GLL 
Sbjct: 61  A--DAVLVPGG-PGTRAAAADPALLAQLQLADPAGQLLGAVC-SGALLLAEAGLLD 112

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLV-ADMLIDEAAK 220
           ++ +  A+G E++E    +  LR A A VVVA      EI        V  D+ I +   
Sbjct: 1   KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDA 60

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
             YD +V+PGG        +    V  ++   E+ +P  AIC  P
Sbjct: 61  DDYDALVIPGGT-NPDKLRRDPDAVAFVRAFAEAGKPVAAICHGP 104

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           +LV   +  E+ E +  +D LR A   V   S  +    +      +  D  IDE     
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVS-KEAGTTVGKHGYSVTVDATIDEVNPEE 60

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPAL 267
           YD +V+PGG    +    + K V ++++  E  +P  AIC  P L
Sbjct: 61  YDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQL 104

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 44/159 (27%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIV-ADALVSNCR----DACGMPGAT 55
           +E    +  LR +GA+VVVA  E    +   HG   V  D  +++      DA  +PG T
Sbjct: 13  VELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT 72

Query: 56  N---LKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-----GLLKGLK--------- 98
           N   L+      + V+  A  G+  AAIC       G W     G+++G K         
Sbjct: 73  NPDKLRRDPDAVAFVRAFAEAGKPVAAIC------HGPWVLISAGVVRGRKLTSYPSIKD 126

Query: 99  ----------------DGKVVTTRGPGTPMEFVVALVEQ 121
                           DG ++T+R P     F  A+++ 
Sbjct: 127 DLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 207 VKLVADMLIDEAAKLSYDLIVLPGGL----GGAQAFAKSKKLVNMLKKQKESNRPYGAIC 262
           +++V D  +D+     YDL++LPGG       A   A    LV    KQ    +P  AIC
Sbjct: 45  LRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLA---GLVRQALKQ---GKPVAAIC 98

Query: 263 ASPALVLEPHGLLK 276
            +    L   GLL 
Sbjct: 99  GATLA-LARAGLLN 111

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 33/114 (28%)

Query: 50  GMPGATNLKESEVLESIVKKQASDGRLYAAICV---FLAVALGSWGLLKGLK-------- 98
           G  G   L     L   +++QA+  +   ++C     LA A    GLL G +        
Sbjct: 70  GGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA----GLLDGRRATTHWAAI 125

Query: 99  ------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGA 134
                             DG + T+ G    ++  +ALV +L+G+  A  V+  
Sbjct: 126 DWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALL 179

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.97
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.92
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.92
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.92
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.91
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.91
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.91
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.91
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	99.89
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.89
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.89
COG4977	328	Transcriptional regulator containing an amidase do	99.88
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.87
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.87
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.87
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.87
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.85
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.85
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.84
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.84
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.84
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.84
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	99.84
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.84
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.83
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	99.83
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	99.83
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	99.82
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.82
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.82
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.81
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.81
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.81
PRK04155	287	chaperone protein HchA; Provisional	99.81
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.81
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.8
PRK11249	752	katE hydroperoxidase II; Provisional	99.77
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.76
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.75
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.74
PRK04155	287	chaperone protein HchA; Provisional	99.74
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.74
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.73
COG4977	328	Transcriptional regulator containing an amidase do	99.7
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.68
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.68
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.67
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.64
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.6
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.29
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.17
PRK11249	752	katE hydroperoxidase II; Provisional	99.16
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.07
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	99.07
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	98.95
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.82
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.79
COG3155	217	ElbB Uncharacterized protein involved in an early	98.75
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.74
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.63
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.58
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.58
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.43
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.41
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	98.35
PRK08250	235	glutamine amidotransferase; Provisional	98.31
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.29
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.26
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.26
PRK07053	234	glutamine amidotransferase; Provisional	98.2
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.16
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.12
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	98.08
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	98.03
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.99
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	97.92
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.91
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	97.91
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.88
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	97.88
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	97.87
PRK06490	239	glutamine amidotransferase; Provisional	97.84
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	97.8
PHA03366	1304	FGAM-synthase; Provisional	97.8
PRK06895	190	putative anthranilate synthase component II; Provi	97.78
PRK05665	240	amidotransferase; Provisional	97.76
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.75
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.72
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	97.7
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.69
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.66
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	97.59
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.58
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	97.57
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	97.52
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	97.51
PRK09065	237	glutamine amidotransferase; Provisional	97.49
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.47
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.42
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.42
PRK00784	488	cobyric acid synthase; Provisional	97.39
PRK08007	187	para-aminobenzoate synthase component II; Provisio	97.38
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.31
PRK05670	189	anthranilate synthase component II; Provisional	97.27
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.27
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.26
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.24
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	97.24
PRK07567	242	glutamine amidotransferase; Provisional	97.23
PLN02335	222	anthranilate synthase	97.22
PRK06774	191	para-aminobenzoate synthase component II; Provisio	97.21
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.17
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	97.16
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	97.15
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.08
PRK08857	193	para-aminobenzoate synthase component II; Provisio	97.07
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.04
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.03
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	97.0
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	97.0
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.0
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	96.99
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	96.98
CHL00101	190	trpG anthranilate synthase component 2	96.97
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	96.96
PRK05637	208	anthranilate synthase component II; Provisional	96.95
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	96.87
PRK05380	533	pyrG CTP synthetase; Validated	96.87
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.85
PRK00758	184	GMP synthase subunit A; Validated	96.84
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	96.83
PRK13566	720	anthranilate synthase; Provisional	96.81
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	96.77
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	96.75
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	96.7
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	96.68
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	96.68
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	96.61
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	96.57
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	96.51
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	96.48
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	96.42
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	96.39
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	96.37
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	96.37
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	96.34
PLN02327	557	CTP synthase	96.17
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	96.12
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	96.12
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	96.08
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	96.01
PRK08250	235	glutamine amidotransferase; Provisional	96.0
PLN02347	536	GMP synthetase	95.93
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	95.9
TIGR00313	475	cobQ cobyric acid synthase CobQ.	95.87
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	95.82
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	95.74
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	95.7
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	95.65
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	95.55
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	95.43
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	95.42
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	95.28
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	95.28
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	95.02
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	94.78
PRK06186	229	hypothetical protein; Validated	94.68
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	94.58
PRK07053	234	glutamine amidotransferase; Provisional	94.39
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	94.29
COG3442	250	Predicted glutamine amidotransferase [General func	94.25
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	94.2
PRK00074	511	guaA GMP synthase; Reviewed	94.11
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	94.05
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	93.71
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	93.68
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	93.66
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	93.54
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	93.32
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	93.23
COG2071	243	Predicted glutamine amidotransferases [General fun	93.16
COG3155	217	ElbB Uncharacterized protein involved in an early	93.09
PRK06490	239	glutamine amidotransferase; Provisional	92.86
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	92.81
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	92.58
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	92.28
PRK00784	488	cobyric acid synthase; Provisional	92.23
PRK05368	302	homoserine O-succinyltransferase; Provisional	92.12
PRK06895	190	putative anthranilate synthase component II; Provi	91.88
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	91.8
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	91.57
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	91.56
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	91.47
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	91.37
PLN02889	918	oxo-acid-lyase/anthranilate synthase	90.96
PHA03366	1304	FGAM-synthase; Provisional	90.91
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	90.71
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	89.8
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	89.58
PLN02617	538	imidazole glycerol phosphate synthase hisHF	89.49
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	89.31
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	89.2
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	89.13
COG4635	175	HemG Flavodoxin [Energy production and conversion	88.61
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	88.32
PRK05665	240	amidotransferase; Provisional	88.24
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	88.0
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	87.95
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	87.88
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	87.58
COG4285	253	Uncharacterized conserved protein [Function unknow	86.59
PRK06774	191	para-aminobenzoate synthase component II; Provisio	86.56
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	86.49
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	86.2
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	86.09
PRK05670	189	anthranilate synthase component II; Provisional	86.0
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	85.47
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	85.3
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	85.24
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	85.24
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	84.79
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	84.7
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	84.54
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	84.48
PRK09065	237	glutamine amidotransferase; Provisional	84.19
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	82.96
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	82.93
PRK07765	214	para-aminobenzoate synthase component II; Provisio	82.69
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	82.3
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	81.73
PRK00758	184	GMP synthase subunit A; Validated	81.07
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.37

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.97  E-value=3.8e-30  Score=208.57  Aligned_cols=196  Identities=43%  Similarity=0.591  Sum_probs=164.3

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|++.|.++|+|.|++|+++|++++.+++++.|..+.+|..+.|....        ||.++...+.+++.+.+++|+|.+
T Consensus        19 ~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~   98 (247)
T KOG2764|consen   19 YEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAE   98 (247)
T ss_pred             eEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHh
Confidence            589999999999999999999998889999999999999988776432        887889999999999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhH
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~  127 (277)
                      .|++|++||+||.++|+..|++.|++                         |||+|||+||+++++|++.++|+|.|++.
T Consensus        99 ~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~eFal~lvEqL~GKek  178 (247)
T KOG2764|consen   99 SGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFEFALKLVEQLGGKEK  178 (247)
T ss_pred             cCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHHHHHHHHHHhcCchh
Confidence            99999999999954788888888888                         99999999999999999999999999999


Q ss_pred             HHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCc
Q 023800          128 ADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV  207 (277)
Q Consensus       128 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~  207 (277)
                      +.++.+.+.+..+.                         +.|+-...|.....+++++ +.++.+-+..          .
T Consensus       179 a~~v~~~l~l~~~~-------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~~g----------~  222 (247)
T KOG2764|consen  179 ANEVKKPLSLLFLP-------------------------VAPEKKAGEACATADHDLE-GRQVPVEKVG----------H  222 (247)
T ss_pred             hhhhhccceeeccc-------------------------cCCCchhcceecceehhhh-cCcceeeccc----------c
Confidence            99998877766433                         4566666777777777777 6666544433          2


Q ss_pred             EEEeCcchhhhccCCccEEEEcCCc
Q 023800          208 KLVADMLIDEAAKLSYDLIVLPGGL  232 (277)
Q Consensus       208 ~i~~~~~~~~~~~~~~D~livpGG~  232 (277)
                      +......|+|+..++||.|++|||.
T Consensus       223 ~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  223 NFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             ceEEEEEehhhhcccccEEEecCCC
Confidence            2222233888877899999999983

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.92  E-value=3e-24  Score=177.96  Aligned_cols=142  Identities=37%  Similarity=0.546  Sum_probs=123.2

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCC--CceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQ   70 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~--~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~   70 (277)
                      +|++.|+++|+++|+++.++|.++  +.+|++++|+.+.+|..+++++.   +     ||..+...+.+++.+.+||+++
T Consensus        16 ~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~   95 (196)
T PRK11574         16 TEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQF   95 (196)
T ss_pred             hhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHH
Confidence            489999999999999999999864  23799999999999999987642   2     7744455567888999999999


Q ss_pred             HhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CC--CeEcCCCCCCHHHHHHHHHHHhcCh
Q 023800           71 ASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DG--KVVTTRGPGTPMEFVVALVEQLYGK  125 (277)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg--~~iT~~g~~~~~~~a~~li~~l~g~  125 (277)
                      +++|++|++||+|++++|+.+|+|+|++                       |+  |+|||+|+++++||++++|+++.|+
T Consensus        96 ~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~  175 (196)
T PRK11574         96 HRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGR  175 (196)
T ss_pred             HHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchHHHHHHHHHHHhcCH
Confidence            9999999999999973466799998887                       44  9999999999999999999999999


Q ss_pred             hHHHHHhhcccccccCC
Q 023800          126 GKADEVSGARVMRANHG  142 (277)
Q Consensus       126 ~~a~~v~~~~~~~~~~~  142 (277)
                      +.|+++++.|.++...+
T Consensus       176 ~~a~~va~~~~~~~~~~  192 (196)
T PRK11574        176 EKAHEVASQLVMAAGIY  192 (196)
T ss_pred             HHHHHHHhhhccCcccc
Confidence            99999999999886543

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.92  E-value=3.2e-24  Score=175.19  Aligned_cols=132  Identities=53%  Similarity=0.792  Sum_probs=116.9

Q ss_pred             CchhhHHHHHHhCCCeEEE--EeeCCCceeecCCCCEEecCccccccc--cC------CCccchhccccChHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVV--ASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ   70 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~--~s~~~~~~v~~~~g~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~   70 (277)
                      .|+..|+++|+++|+++++  +|++++.++++++|+.+.+|..+++..  ..      ||..+...+..++.+++||+++
T Consensus        13 ~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~   92 (179)
T TIGR01383        13 MEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQ   92 (179)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHH
Confidence            3789999999999977775  999864589999999999999988743  22      6643455567889999999999


Q ss_pred             HhCCCEEEEEchhHHHHHHHcCCCCCCC------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           71 ASDGRLYAAICVFLAVALGSWGLLKGLK------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aGll~g~~------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                      ++++++|++||+|++ +||++|+|+||+                        |||++||+|+.++++|++++++++.|++
T Consensus        93 ~~~~~~i~~ic~G~~-~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~  171 (179)
T TIGR01383        93 ESKGKLVAAICAAPA-VLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFALALVELLCGKE  171 (179)
T ss_pred             HHCCCEEEEEChhHH-HHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHHHHHHHHhcCHH
Confidence            999999999999999 999999999987                        8999999999999999999999999999


Q ss_pred             HHHHHhh
Q 023800          127 KADEVSG  133 (277)
Q Consensus       127 ~a~~v~~  133 (277)
                      .++++++
T Consensus       172 ~a~~va~  178 (179)
T TIGR01383       172 KAQEVAA  178 (179)
T ss_pred             HHHHhhc
Confidence            9999975

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.92  E-value=2.9e-24  Score=176.72  Aligned_cols=134  Identities=25%  Similarity=0.325  Sum_probs=121.1

Q ss_pred             CchhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHH
Q 023800            1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV   67 (277)
Q Consensus         1 ~E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l   67 (277)
                      .|+..|+++|++++       |++.++|.++ .++++++|+.+.+|..+++..+.      ||. +......++.+.+||
T Consensus        12 ~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~-~~~~~~~~~~l~~~l   89 (187)
T cd03137          12 LDLSGPAEVFGEANRALGPPAYELRVCSPEG-GPVRSSSGLSLVADAGLDALAAADTVIVPGGP-DVDGRPPPPALLAAL   89 (187)
T ss_pred             hHHhHHHHHHHHHHhhcCCCCeEEEEEeCCC-CceeecCCcEEEcCcCccccCCCCEEEECCCc-ccccccCCHHHHHHH
Confidence            37889999999987       9999999987 68999999999999988755432      663 444467899999999


Q ss_pred             HHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHH
Q 023800           68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV  119 (277)
Q Consensus        68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li  119 (277)
                      +++++++++|++||+|++ +|+++|+|+||+                            |||++||+|+.+++||+++++
T Consensus        90 ~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~li  168 (187)
T cd03137          90 RRAAARGARVASVCTGAF-VLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLV  168 (187)
T ss_pred             HHHHhcCCEEEEECHHHH-HHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccHHHHHHHHHHHH
Confidence            999999999999999999 999999999997                            899999999999999999999


Q ss_pred             HHhcChhHHHHHhhcccc
Q 023800          120 EQLYGKGKADEVSGARVM  137 (277)
Q Consensus       120 ~~l~g~~~a~~v~~~~~~  137 (277)
                      +++.|++.++++++.|.+
T Consensus       169 ~~~~g~~~a~~~a~~l~~  186 (187)
T cd03137         169 REDLGAAVANRVARRLVV  186 (187)
T ss_pred             HHHhCHHHHHHHHHHhcc
Confidence            999999999999998865

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.91  E-value=9.8e-24  Score=174.73  Aligned_cols=135  Identities=24%  Similarity=0.297  Sum_probs=118.5

Q ss_pred             chhhHHHHHHh------------CCCeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchh--ccccCh
Q 023800            2 EAVITIDVLRR------------SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGAT--NLKESE   61 (277)
Q Consensus         2 E~~~~~~~l~~------------~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~--~~~~~~   61 (277)
                      ++..|+++|+.            .+|+|+++|.++ .+|++++|+.+.+|..+++.++.      ||.....  .+..++
T Consensus        13 ~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~-~~v~s~~g~~i~~d~~~~~~~~~D~liIpgg~~~~~~~~~~~~~   91 (195)
T cd03138          13 SLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDG-GPVLLAGGILILPDATLADVPAPDLVIVPGLGGDPDELLLADNP   91 (195)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCC-CeeecCCCceecccccccccCCCCEEEECCCcCCchhhhhhccH
Confidence            56677777764            469999999997 68999999999999988876543      5543333  467899


Q ss_pred             HHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHH
Q 023800           62 VLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPME  113 (277)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~  113 (277)
                      .+++||+++++++++|++||+|++ +|+++|+|+||+                            |||++||+|+.++++
T Consensus        92 ~l~~~l~~~~~~~~~i~aic~G~~-~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~~~~d  170 (195)
T cd03138          92 ALIAWLRRQHANGATVAAACTGVF-LLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWAD  170 (195)
T ss_pred             HHHHHHHHHHHcCCEEEEecHHHH-HHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHHHHHH
Confidence            999999999999999999999999 999999999987                            899999999999999


Q ss_pred             HHHHHHHHhcChhHHHHHhhccccc
Q 023800          114 FVVALVEQLYGKGKADEVSGARVMR  138 (277)
Q Consensus       114 ~a~~li~~l~g~~~a~~v~~~~~~~  138 (277)
                      |++++++++.|++.|+++++.|.++
T Consensus       171 ~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         171 LALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHhccC
Confidence            9999999999999999999988753

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.91  E-value=1.5e-23  Score=165.01  Aligned_cols=114  Identities=25%  Similarity=0.357  Sum_probs=105.1

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ++||+|+++|||++.|+..++++|+.+|++++++|++++ +++++.|..+.++.++++.+..+||+|+||||......+.
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~   79 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA   79 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence            368999999999999999999999999999999999998 9999999999999999987666899999999865444457


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  275 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL  275 (277)
                      .++.+.+||+++++++++|+++|+|++ +||++|||
T Consensus        80 ~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll  114 (142)
T cd03132          80 PSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIP  114 (142)
T ss_pred             cChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCC
Confidence            789999999999999999999999999 99999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.91  E-value=9.5e-24  Score=172.96  Aligned_cols=135  Identities=23%  Similarity=0.377  Sum_probs=123.0

Q ss_pred             CchhhHHHHHHhCC-----CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHH
Q 023800            1 MEAVITIDVLRRSG-----ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKK   69 (277)
Q Consensus         1 ~E~~~~~~~l~~~~-----~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~   69 (277)
                      .|+..++++|++++     |+|.++|+++ .+|++++|+.+.+|..+++...+      || .+...+..++.+++||++
T Consensus        12 ~~~~~~~d~~~~a~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg-~~~~~~~~~~~~~~~l~~   89 (183)
T cd03139          12 LDVIGPYEVFGRAPRLAAPFEVFLVSETG-GPVSSRSGLTVLPDTSFADPPDLDVLLVPGG-GGTRALVNDPALLDFIRR   89 (183)
T ss_pred             ehheeHHHHHHHhhccCCCEEEEEEECCC-CceEeCCCCEEcCCcccccCCCCCEEEECCC-cchhhhccCHHHHHHHHH
Confidence            47889999999998     9999999987 68999999999999999865433      76 355557889999999999


Q ss_pred             HHhCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           70 QASDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        70 ~~~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      +++++|+|+++|+|++ +|+++|+|+||+                          |||++||+|+.++.+|++++|+++.
T Consensus        90 ~~~~~k~i~aic~g~~-~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~  168 (183)
T cd03139          90 QAARAKYVTSVCTGAL-LLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLF  168 (183)
T ss_pred             hcccCCEEEEEchHHH-HHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHHHHHHHHHHHHHh
Confidence            9999999999999999 999999999997                          7999999999999999999999999


Q ss_pred             ChhHHHHHhhccccc
Q 023800          124 GKGKADEVSGARVMR  138 (277)
Q Consensus       124 g~~~a~~v~~~~~~~  138 (277)
                      |++.++++++.|.++
T Consensus       169 g~~~a~~~a~~~~~~  183 (183)
T cd03139         169 GEELAQAVALLIEYD  183 (183)
T ss_pred             CHHHHHHHHHHhccC
Confidence            999999999998864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.91  E-value=1.1e-23  Score=172.98  Aligned_cols=134  Identities=22%  Similarity=0.302  Sum_probs=120.3

Q ss_pred             CchhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHH
Q 023800            1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV   67 (277)
Q Consensus         1 ~E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l   67 (277)
                      .|+..|+|+|+.++       |+|+++|.++ .++++++|+.+.+|..+.+..+.      ||. +.. ++.++.+++||
T Consensus        12 ~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~-~~~-~~~~~~~~~~l   88 (185)
T cd03136          12 LALASAIEPLRAANRLAGRELYRWRVLSLDG-APVTSSNGLRVAPDAALEDAPPLDYLFVVGGL-GAR-RAVTPALLAWL   88 (185)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceEEEEEcCCC-CeeecCCCcEEeCCccccccCCCCEEEEeCCC-Ccc-ccCCHHHHHHH
Confidence            36788999998764       9999999987 68999999999999988765443      664 333 68899999999


Q ss_pred             HHHHhCCCEEEEEchhHHHHHHHcCCCCCCC---------------------------CCCeEcCCCCCCHHHHHHHHHH
Q 023800           68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVE  120 (277)
Q Consensus        68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~---------------------------dg~~iT~~g~~~~~~~a~~li~  120 (277)
                      +++++++++|+++|+|++ +|+++|+|+||+                           |||+||++|+.++++|++++++
T Consensus        89 ~~~~~~~~~i~aic~g~~-~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~ii~  167 (185)
T cd03136          89 RRAARRGVALGGIDTGAF-LLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALDLMLELIA  167 (185)
T ss_pred             HHHHhcCCEEEEEcHHHH-HHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHHHHHHHHHHHHH
Confidence            999999999999999999 999999999997                           8999999999999999999999


Q ss_pred             HhcChhHHHHHhhccccc
Q 023800          121 QLYGKGKADEVSGARVMR  138 (277)
Q Consensus       121 ~l~g~~~a~~v~~~~~~~  138 (277)
                      ++.|++.|+++++.|+++
T Consensus       168 ~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         168 RDHGAALAARVAEQFLHD  185 (185)
T ss_pred             HHhCHHHHHHHHHHHccC
Confidence            999999999999998764

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>TIGR01383 not_thiJ DJ-1 family protein

Probab=99.89  E-value=1.7e-22  Score=164.99  Aligned_cols=114  Identities=46%  Similarity=0.711  Sum_probs=102.9

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEE--EeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVV--ASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~--vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ||+|+++|||+++|+..|+++|+.+|+++++  +|++++.+++++.|+.+.++..+++++.++||+|+||||......+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~   80 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR   80 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence            6999999999999999999999999987775  99986448999999999999999987667899999999864345566


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .++.+.+||+++++++++|+++|+|++ +||++|||+
T Consensus        81 ~~~~l~~~l~~~~~~~~~i~~ic~G~~-~La~aGlL~  116 (179)
T TIGR01383        81 NSKLLLNILKKQESKGKLVAAICAAPA-VLLAAGVLL  116 (179)
T ss_pred             hCHHHHHHHHHHHHCCCEEEEEChhHH-HHHhcCCCC
Confidence            789999999999999999999999999 999999997

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.89  E-value=2.8e-22  Score=161.13  Aligned_cols=112  Identities=45%  Similarity=0.667  Sum_probs=102.7

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEE-cccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~-~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~  241 (277)
                      |+|+++|||+++|+..++++|+.+||+++++|++++ ++. ++.|+.+.++..+++.++.+||+|+||||......+..+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~   79 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN   79 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence            689999999999999999999999999999999998 665 679999999999998766789999999996335556789


Q ss_pred             HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +++.+||+++++++++|+++|+|++ +||++|||+
T Consensus        80 ~~l~~~l~~~~~~~~~i~~ic~g~~-~La~aglL~  113 (163)
T cd03135          80 EKLIKLLKEFNAKGKLIAAICAAPA-VLAKAGLLK  113 (163)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhHH-HHHHcCCcC
Confidence            9999999999999999999999999 999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.89  E-value=2.2e-22  Score=161.77  Aligned_cols=120  Identities=48%  Similarity=0.756  Sum_probs=106.6

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceee-cCCCCEEecCccccccc--cC------CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVD-ACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~-~~~g~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      .|+..|+++|+.++|+++++|+++ .++. ++.|+.+.+|..+++.+  ++      ||..+...+.+++++++||++++
T Consensus        12 ~e~~~~~~~~~~a~~~v~~vs~~~-~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~   90 (163)
T cd03135          12 IEAVTPVDVLRRAGIEVTTASLEK-KLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFN   90 (163)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEcCC-CceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHH
Confidence            378899999999999999999997 4554 68999999999998863  22      76424566678999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      +++++|++||+|++ +|+++|+|+||+                       |||+|||+|+.+++||++++++++
T Consensus        91 ~~~~~i~~ic~g~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135          91 AKGKLIAAICAAPA-VLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             HcCCEEEEEchhHH-HHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHHHHhC
Confidence            99999999999999 999999999997                       999999999999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.88  E-value=9e-22  Score=171.92  Aligned_cols=155  Identities=18%  Similarity=0.288  Sum_probs=127.9

Q ss_pred             CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHH
Q 023800           15 ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL   88 (277)
Q Consensus        15 ~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~L   88 (277)
                      |.+..+|.++ .+|++++|+.|.+|..+++....      ||. ........+++.+||++.+++|..|++||+|+| +|
T Consensus        45 ~~w~~~s~~g-~~V~ss~G~~i~~d~~~~~~~~~~~v~v~~g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf-~L  121 (328)
T COG4977          45 YVWSIVSADG-GPVRSSSGLSIAPDGGLEAAPPIDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGGLCTGAF-VL  121 (328)
T ss_pred             cceEEeecCC-CCcccCCCceEecCCcccccCcceEEEEecCC-CcccccchHHHHHHHHHHHhcCCeEEEehHhHH-HH
Confidence            6799999998 59999999999999999887643      442 344444448999999999999999999999999 99


Q ss_pred             HHcCCCCCCC---------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccC
Q 023800           89 GSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANH  141 (277)
Q Consensus        89 a~aGll~g~~---------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~  141 (277)
                      |++||||||+                           ||++|||+|.++++|++++||++.+|.+.|.+|++.+++++.+
T Consensus       122 A~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R  201 (328)
T COG4977         122 AEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIR  201 (328)
T ss_pred             HHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhcccc
Confidence            9999999999                           9999999999999999999999999999999999999999766


Q ss_pred             CCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhC
Q 023800          142 GDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRA  186 (277)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a  186 (277)
                      ...              ...++......+.....+...++.++..
T Consensus       202 ~~~--------------~~Q~~~~~~~~~~~~~~l~~~i~~me~n  232 (328)
T COG4977         202 SGG--------------DRQRLPLLGRLGHRDPRLLRAIELMEAN  232 (328)
T ss_pred             CCC--------------ccccccccccCCCCCHHHHHHHHHHHHh
Confidence            532              1123334444555666666666666653

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.87  E-value=8.5e-22  Score=158.79  Aligned_cols=112  Identities=29%  Similarity=0.470  Sum_probs=104.1

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeC-CCceEEcccCc-EEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVA-DKLEILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~-~~~~v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ||+|+++|||++.|+..+.+.|+++|++++++|++ ++ +++++.|. .+.++..+++.++.+||+|+||||. ....+.
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~   78 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR   78 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence            68999999999999999999999999999999999 77 99999999 9999999998766689999999996 455567


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .++.+.+||+++++++++|+++|+|++ +||++|+|+
T Consensus        79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~  114 (165)
T cd03134          79 RDPDAVAFVRAFAEAGKPVAAICHGPW-VLISAGVVR  114 (165)
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEchHHH-HHHhcCccC
Confidence            789999999999999999999999999 999999997

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.87  E-value=1.3e-21  Score=157.83  Aligned_cols=112  Identities=28%  Similarity=0.440  Sum_probs=103.9

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~  241 (277)
                      ||+|+++|||++.|+..|+++|+++|+++.++|.+++ ++.++.|+.+.++..++++++.+||+|+||||.. ...+..+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~~~~~   78 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLN   78 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHHhccC
Confidence            6899999999999999999999999999999999988 9999999999999999987766899999999964 5555678


Q ss_pred             HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +.+.+||+++++++++|+++|+|++ +||++|||+
T Consensus        79 ~~l~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~  112 (166)
T TIGR01382        79 NKAVRLVREFVEKGKPVAAICHGPQ-LLISAGVLR  112 (166)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHH-HHHhcCccC
Confidence            8999999999999999999999999 999999997

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.87  E-value=2.7e-21  Score=160.24  Aligned_cols=118  Identities=48%  Similarity=0.643  Sum_probs=103.0

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCC--CceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~--~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      ++|||+|+++|||++.|+..|+++|+++++++.++|.++  +.+|+++.|+.+.+|..+++++.++||+|+||||.....
T Consensus         1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~   80 (196)
T PRK11574          1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE   80 (196)
T ss_pred             CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence            358999999999999999999999999999999999864  237999999999999999987666899999999864455


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .+..++.+.+||+++++++++|++||+|++++|+.+|+|+
T Consensus        81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~  120 (196)
T PRK11574         81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFP  120 (196)
T ss_pred             hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccC
Confidence            5677889999999999999999999999982356688874

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.87  E-value=1.6e-21  Score=157.38  Aligned_cols=119  Identities=29%  Similarity=0.362  Sum_probs=107.6

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      .|+..|+++|+++||+++++|.++ .+++++.|+.+.++..+++.+.   +     ||. +...+..++.+.+||+++++
T Consensus        13 ~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~~~l~~~l~~~~~   90 (166)
T TIGR01382        13 SELLYPLDRLREAGHEVDTVSKEA-GTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLNNKAVRLVREFVE   90 (166)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCC-CceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccCHHHHHHHHHHHH
Confidence            378999999999999999999987 6899999999999999987652   2     763 45556678999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      ++++|++||+|++ +||++|||+||+                          |||+|||+|++++.+|+.++++++
T Consensus        91 ~~~~i~~ic~G~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa~~~~~~l  165 (166)
T TIGR01382        91 KGKPVAAICHGPQ-LLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL  165 (166)
T ss_pred             cCCEEEEEChHHH-HHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHHHHHHHHh
Confidence            9999999999999 999999999998                          899999999999999999999986

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.85  E-value=1.3e-21  Score=165.25  Aligned_cols=121  Identities=23%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCcee---------------------ecCCCCEEecCccccccccC--------CCc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRV---------------------DACHGVKIVADALVSNCRDA--------CGM   51 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v---------------------~~~~g~~v~~d~~~~~~~~~--------gG~   51 (277)
                      .|++.|+++|+++||+|+++|++++.++                     .++++..+..+..+++++..        ||+
T Consensus        25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~  104 (231)
T cd03147          25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH  104 (231)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence            4899999999999999999999863111                     12344566777888876532        887


Q ss_pred             cchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc-------CCCCCCC--------------------------
Q 023800           52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK--------------------------   98 (277)
Q Consensus        52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~--------------------------   98 (277)
                      +++..+++|+++++++++|+++||+|+||||||+ +|+.+       ++++||+                          
T Consensus       105 g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~  183 (231)
T cd03147         105 GTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESI  183 (231)
T ss_pred             chhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCCccH
Confidence            7778899999999999999999999999999999 89987       8999887                          


Q ss_pred             ------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           99 ------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        99 ------------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                                              |||+||+++|.++.+||+.++++|
T Consensus       184 e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         184 EDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             HHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                                    899999999999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.85  E-value=1e-20  Score=153.36  Aligned_cols=118  Identities=28%  Similarity=0.388  Sum_probs=104.0

Q ss_pred             CchhhHHHHHHhC-CCeEEEEeeCCCceeecCCCCEEecCccccccc--c-C-----CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCR--D-A-----CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~--~-~-----gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      +|+++|+++|++. +|+++++|+++ .++++++|+.+.++..+++.+  + +     ||. ... ...++.+++|||+++
T Consensus        12 ~e~~~~~~~l~~~~~~~~~~~s~~~-~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~~~l~~~l~~~~   88 (170)
T cd03140          12 WEGAYLAALLNSYEGFEVRTVSPTG-EPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEAPDLAGLVRQAL   88 (170)
T ss_pred             hHHHHHHHHhcccCCcEEEEEeCCC-CeeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCcHHHHHHHHHHH
Confidence            5899999999997 89999999997 689999999999999998873  2 2     764 333 347899999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      +++++|++||+|++ +||++|+|+||+                             |||+|||+|++ ++||++++++.+
T Consensus        89 ~~~~~i~aic~G~~-~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~d~al~~i~~l  166 (170)
T cd03140          89 KQGKPVAAICGATL-ALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PVEFAAEILRAL  166 (170)
T ss_pred             HcCCEEEEEChHHH-HHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HHHHHHHHHHHc
Confidence            99999999999999 999999999998                             99999998755 799999999987


Q ss_pred             c
Q 023800          123 Y  123 (277)
Q Consensus       123 ~  123 (277)
                      .
T Consensus       167 ~  167 (170)
T cd03140         167 D  167 (170)
T ss_pred             C
Confidence            4

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.84  E-value=1.7e-20  Score=167.06  Aligned_cols=137  Identities=23%  Similarity=0.327  Sum_probs=120.4

Q ss_pred             CchhhHHHHHHhC-------CCeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHH
Q 023800            1 MEAVITIDVLRRS-------GADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV   67 (277)
Q Consensus         1 ~E~~~~~~~l~~~-------~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l   67 (277)
                      +|+..|.++|+.+       .|+|.++|.++ .+|++++|+.+.+|..+++.+..      || .+.. ...++.+.+||
T Consensus        23 ~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~-~~v~ss~g~~i~~d~~~~~~~~~D~livpGg-~~~~-~~~~~~l~~~l   99 (322)
T PRK09393         23 FEFGCAVEIFGLPRPELGVDWYRFAVAAVEP-GPLRAAGGITVVADGGLELLDRADTIVIPGW-RGPD-APVPEPLLEAL   99 (322)
T ss_pred             hHHHHHHHHHHHHHhhcCCCceEEEEEECCC-CceEeCCCcEEeCCCCccccCCCCEEEECCC-Cccc-ccCCHHHHHHH
Confidence            4788899999543       27999999987 68999999999999999876543      55 3333 35689999999


Q ss_pred             HHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHH
Q 023800           68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV  119 (277)
Q Consensus        68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li  119 (277)
                      +++++++++|++||+|++ +||++|||+|++                            |||++||+|+.++++++++++
T Consensus       100 ~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~iiT~~G~~a~~d~~l~li  178 (322)
T PRK09393        100 RAAHARGARLCSICSGVF-VLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQILTSAGSAAGIDLCLHLV  178 (322)
T ss_pred             HHHHHcCCEEEEEcHHHH-HHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEEecccHHHHHHHHHHHH
Confidence            999999999999999999 999999999998                            799999999999999999999


Q ss_pred             HHhcChhHHHHHhhcccccccC
Q 023800          120 EQLYGKGKADEVSGARVMRANH  141 (277)
Q Consensus       120 ~~l~g~~~a~~v~~~~~~~~~~  141 (277)
                      ++..|.+.++++++.|.++..+
T Consensus       179 ~~~~g~~~a~~va~~ll~~~~~  200 (322)
T PRK09393        179 RRDFGSEAANRVARRLVVPPHR  200 (322)
T ss_pred             HHHhCHHHHHHHHHHhCcCcCC
Confidence            9999999999999999987544

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.84  E-value=9.8e-21  Score=152.59  Aligned_cols=117  Identities=29%  Similarity=0.409  Sum_probs=105.8

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeC-CCceeecCCCC-EEecCcccccccc---C-----CCccchhccccChHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVE-KQLRVDACHGV-KIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQ   70 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~-~~~~v~~~~g~-~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~   70 (277)
                      .|+..++++|++++|+++++|++ + .+++++.|. .+.+|..+++...   +     ||. +...+..++.+++||+++
T Consensus        13 ~e~~~~~~~l~~a~~~v~~vs~~~~-~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~~~~~~~~~l~~~   90 (165)
T cd03134          13 VELTYPLYRLREAGAEVVVAGPEAG-GEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLRRDPDAVAFVRAF   90 (165)
T ss_pred             HHHHHHHHHHHHCCCEEEEEccCCC-cccccCcCceeecCCCChHHCCHHHCCEEEECCCC-ChhhhccCHHHHHHHHHH
Confidence            37889999999999999999998 6 689999999 9999999987642   2     774 555567889999999999


Q ss_pred             HhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHH
Q 023800           71 ASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVE  120 (277)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~  120 (277)
                      ++++++|++||+|++ +|+++|+|+||+                         |||+|||+|+.++++|+..+++
T Consensus        91 ~~~~~~i~~ic~G~~-~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134          91 AEAGKPVAAICHGPW-VLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             HHcCCeEEEEchHHH-HHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHHHHHHHh
Confidence            999999999999999 999999999998                         9999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.84  E-value=9.6e-21  Score=153.46  Aligned_cols=110  Identities=23%  Similarity=0.403  Sum_probs=100.5

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~  241 (277)
                      |+++++|||++.|++.+.+.|+++ +++++++|++++ +++++.|+.+.++..+++.++++||+|+||||.. .. ...+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~-~~~~   77 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WD-NPEA   77 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-cc-cCCc
Confidence            578999999999999999999997 799999999998 9999999999999999987656899999999963 22 3467


Q ss_pred             HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +.+.+||+++++++++|+++|+|++ +||++|||+
T Consensus        78 ~~l~~~l~~~~~~~~~i~aic~G~~-~La~aGlL~  111 (170)
T cd03140          78 PDLAGLVRQALKQGKPVAAICGATL-ALARAGLLN  111 (170)
T ss_pred             HHHHHHHHHHHHcCCEEEEEChHHH-HHHHCCCcC
Confidence            8999999999999999999999999 999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.84  E-value=1.1e-20  Score=152.40  Aligned_cols=116  Identities=28%  Similarity=0.439  Sum_probs=104.4

Q ss_pred             chhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHH
Q 023800            2 EAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVK   68 (277)
Q Consensus         2 E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~   68 (277)
                      |+..++++|+.++       |+++++|.++ .+|++++|+.+.++..+++....      ||. ..+....++.+.+||+
T Consensus        10 ~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~-~~v~~s~g~~i~~~~~~~~~~~~D~lvvpg~~-~~~~~~~~~~l~~~l~   87 (166)
T PF13278_consen   10 ELAGPLDVLRAANRLSGEPLFEVRLVSPTG-GPVTSSSGLRIQPDGSLDDAPDFDILVVPGGP-GFDAAAKDPALLDWLR   87 (166)
T ss_dssp             HHHHHHHHHTTCTHHCTTTTEEEEEEESSS-CEEEBTTSEEEEESEETCCCSCCSEEEEE-ST-THHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhchhhcCCCCeEEEEEecCC-CeeeecCCeEEEeccChhhcccCCEEEeCCCC-CchhcccCHHHHHHhh
Confidence            7889999999988       9999999997 69999999999999999986543      664 3455678899999999


Q ss_pred             HHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHHH
Q 023800           69 KQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVE  120 (277)
Q Consensus        69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li~  120 (277)
                      ++++++++|+++|+|++ +||++|+|+|++                            |||++||+|+.+++|+++++||
T Consensus        88 ~~~~~~~~i~aic~G~~-~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen   88 QQHAQGTYIAAICTGAL-LLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             HHHCCTSEEEEETTHHH-HHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             hhhccceEEeeeehHHH-HHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHHHHHHHHHHhC
Confidence            99999999999999999 999999999999                            9999999999999999999996

...

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.84  E-value=1.3e-20  Score=154.99  Aligned_cols=109  Identities=21%  Similarity=0.327  Sum_probs=100.1

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      |+|+++|||++.|+..+.|+|+.+|       +++.++|++++ +++++.|+++.+|..+++.  ++||+|+||||.. .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~~-~   76 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGPD-V   76 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCcc-c
Confidence            5899999999999999999999998       89999999998 9999999999999998853  5799999999863 4


Q ss_pred             HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .....++.+.+||+++++++++|+++|+|++ +||++|+|+
T Consensus        77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~  116 (187)
T cd03137          77 DGRPPPPALLAALRRAAARGARVASVCTGAF-VLAEAGLLD  116 (187)
T ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEECHHHH-HHHHccCcC
Confidence            4467899999999999999999999999999 999999997

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.84  E-value=2.9e-20  Score=152.08  Aligned_cols=120  Identities=25%  Similarity=0.314  Sum_probs=104.0

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc--eeec-------------CCCCEEecCcccccccc---C-----CCccchhcc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL--RVDA-------------CHGVKIVADALVSNCRD---A-----CGMPGATNL   57 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~--~v~~-------------~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~   57 (277)
                      .|+..|+++|+++|++|+++|++++.  +++.             ..|..+.++..+++...   +     ||. +...+
T Consensus        13 ~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liv~GG~-~~~~~   91 (180)
T cd03169          13 YEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDALVIPGGR-APEYL   91 (180)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEEEEcCCC-Chhhh
Confidence            38899999999999999999998741  3443             36899999999987642   2     774 45556


Q ss_pred             ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHH
Q 023800           58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPM  112 (277)
Q Consensus        58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~  112 (277)
                      ..++.+.+||+++++++++|++||+|++ +|+++|||+||+                         |||+|||+|+.++.
T Consensus        92 ~~~~~~~~~l~~~~~~~k~i~~ic~G~~-~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~iiT~~~~~~~~  170 (180)
T cd03169          92 RLDEKVLAIVRHFAEANKPVAAICHGPQ-ILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQAWPDHP  170 (180)
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECCEEEecCCchHH
Confidence            6789999999999999999999999999 999999999998                         99999999999999


Q ss_pred             HHHHHHHHHh
Q 023800          113 EFVVALVEQL  122 (277)
Q Consensus       113 ~~a~~li~~l  122 (277)
                      +|+.++++.|
T Consensus       171 ~f~~~~~~~l  180 (180)
T cd03169         171 AFLREFLKLL  180 (180)
T ss_pred             HHHHHHHHhC
Confidence            9999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.83  E-value=3.2e-20  Score=151.77  Aligned_cols=113  Identities=25%  Similarity=0.446  Sum_probs=99.9

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc--eEEc-------------ccCcEEEeCcchhhhccCCccEE
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL--EILA-------------SCQVKLVADMLIDEAAKLSYDLI  226 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~--~v~~-------------~~g~~i~~~~~~~~~~~~~~D~l  226 (277)
                      ||+|+++||+++.|+..|+++|+++|++++++|+++++  ++.+             ..|..+.++..++++++.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            68999999999999999999999999999999999862  2333             36899999999998776689999


Q ss_pred             EEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          227 VLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       227 ivpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +||||. ....+..++.+.+||+++++++|+|++||+|++ +||++|||+
T Consensus        81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~-~La~agll~  128 (180)
T cd03169          81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ-ILAAAGVLK  128 (180)
T ss_pred             EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHHcCccC
Confidence            999996 344455678999999999999999999999999 999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.83  E-value=2.8e-20  Score=153.98  Aligned_cols=110  Identities=22%  Similarity=0.359  Sum_probs=99.3

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhC------------CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRA------------KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG  230 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a------------~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG  230 (277)
                      |+|+++|||..+++.+++|+|+.+            +|+++++|.+++ +|.++.|+.+.+|..+++.  ++||+|+|||
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg   77 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG   77 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence            689999999999999999999974            489999999998 9999999999999988764  5899999999


Q ss_pred             CcchHH--hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          231 GLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       231 G~~~~~--~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      |.....  .+..++.+.+||+++++++++|++||+|++ +||++|+|+
T Consensus        78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~agll~  124 (195)
T cd03138          78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVF-LLAEAGLLD  124 (195)
T ss_pred             CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHH-HHHHccCcC
Confidence            854333  467899999999999999999999999999 999999997

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.83  E-value=2.1e-20  Score=153.14  Aligned_cols=109  Identities=18%  Similarity=0.401  Sum_probs=101.1

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCC-----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~-----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      |+|+++|||+++|+..++|+|+.+|     +++.++|++++ +|++++|+.+.+|..+++.  ..||+|+||||. ....
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~-~~~~   76 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGG-GTRA   76 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCc-chhh
Confidence            5899999999999999999999999     99999999998 9999999999999998864  479999999995 3555


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +..++.+.+||+++++++|+|+++|+|++ +|+++|+|+
T Consensus        77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~-~La~agll~  114 (183)
T cd03139          77 LVNDPALLDFIRRQAARAKYVTSVCTGAL-LLAAAGLLD  114 (183)
T ss_pred             hccCHHHHHHHHHhcccCCEEEEEchHHH-HHHhcCCcC
Confidence            67899999999999999999999999999 999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.82  E-value=4.7e-20  Score=151.39  Aligned_cols=108  Identities=23%  Similarity=0.315  Sum_probs=99.0

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      |+|+++|||+.+|+..++|+|+.+|       |+++++|.+++ +++++.|+.+.+|..+.+.  .+||+|+||||.. .
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~-~   76 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLG-A   76 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCC-c
Confidence            6899999999999999999999886       89999999987 9999999999999988754  5799999999864 3


Q ss_pred             HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      . ...++.+.+||++++++++.|+++|+|++ +||++|+|+
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~-~La~aGll~  115 (185)
T cd03136          77 R-RAVTPALLAWLRRAARRGVALGGIDTGAF-LLARAGLLD  115 (185)
T ss_pred             c-ccCCHHHHHHHHHHHhcCCEEEEEcHHHH-HHHHccccC
Confidence            3 67899999999999999999999999999 999999997

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.82  E-value=3.7e-20  Score=146.49  Aligned_cols=107  Identities=37%  Similarity=0.552  Sum_probs=96.3

Q ss_pred             eEEEEeeCCCceeecCCC---CEEecCccccccccC--------CCccchhccccC-hHHHHHHHHHHhCCCEEEEEchh
Q 023800           16 DVVVASVEKQLRVDACHG---VKIVADALVSNCRDA--------CGMPGATNLKES-EVLESIVKKQASDGRLYAAICVF   83 (277)
Q Consensus        16 ~v~~~s~~~~~~v~~~~g---~~v~~d~~~~~~~~~--------gG~~~~~~~~~~-~~~~~~l~~~~~~g~~i~aiC~g   83 (277)
                      +|+++|+..+..|++++|   ..+.+|..+++++..        ||+.++..++.+ +.+++++++|++++|+|+|||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            589999987678999999   999999999998753        887658888855 99999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCC---------------------------CC-CeEcCCCCCCHHHHHHHHHHHhc
Q 023800           84 LAVALGSWGLLKGLK---------------------------DG-KVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        84 ~~~~La~aGll~g~~---------------------------dg-~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      |. +|+++|+|+||+                           |+ |+||++||.++.+|++.++++|.
T Consensus        81 ~~-~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L~  147 (147)
T PF01965_consen   81 PA-VLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEALG  147 (147)
T ss_dssp             HH-HHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHHT
T ss_pred             cc-hhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHcC
Confidence            98 999999999999                           99 99999999999999999999873

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.82  E-value=3.4e-20  Score=156.74  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=103.6

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeec----------------CCCCEEecCccccccc--------cC------CC
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDA----------------CHGVKIVADALVSNCR--------DA------CG   50 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~----------------~~g~~v~~d~~~~~~~--------~~------gG   50 (277)
                      .|+++|+++|+++||+|+++|++++.+...                .++..+..+..++++.        ++      ||
T Consensus        26 ~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG  105 (232)
T cd03148          26 VEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGG  105 (232)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCC
Confidence            489999999999999999999987422110                1344577788888762        22      88


Q ss_pred             ccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCC------CCCCC--------------------------
Q 023800           51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL------LKGLK--------------------------   98 (277)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl------l~g~~--------------------------   98 (277)
                      ++++..+++++.+.+++++|+++||+|+||||||+ +|..+++      ++||+                          
T Consensus       106 ~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~  184 (232)
T cd03148         106 HGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLTWL  184 (232)
T ss_pred             CCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCccccc
Confidence            87788999999999999999999999999999999 8999998      88886                          


Q ss_pred             -----------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                                             |||+||+++|.|+..++..+++.+
T Consensus       185 le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         185 VGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             HHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                                   999999999999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.81  E-value=1.8e-19  Score=145.42  Aligned_cols=106  Identities=29%  Similarity=0.450  Sum_probs=95.0

Q ss_pred             EecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          166 PIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +++|||+.+|++.++|+|+.+|       ++++++|.+++ +|.++.|+.+.++..+++.  .++|+|+||||.. ....
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~   76 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA   76 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence            5799999999999999999998       89999999998 9999999999999999983  6899999999974 4556


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++.+.+||++++++++.|+++|+|++ +||++|||+
T Consensus        77 ~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~aGlL~  113 (166)
T PF13278_consen   77 AKDPALLDWLRQQHAQGTYIAAICTGAL-LLAEAGLLD  113 (166)
T ss_dssp             TT-HHHHHHHHHHHCCTSEEEEETTHHH-HHHHTTTTT
T ss_pred             ccCHHHHHHhhhhhccceEEeeeehHHH-HHhhhhccC
Confidence            7889999999999999999999999999 999999997

...

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.81  E-value=1.9e-19  Score=148.24  Aligned_cols=116  Identities=33%  Similarity=0.532  Sum_probs=101.7

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC-ceEEcccC-cEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK-LEILASCQ-VKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~-~~v~~~~g-~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      ++|++|++++||+..|+..|+++|+++|++++++++.++ ..+.+..| ..+.++..++++++++||+|++|||..++..
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~   81 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY   81 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence            478999999999999999999999999999999999874 25555555 6777778888887779999999999435666


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC-CCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG-lL~  276 (277)
                      +..++.+.+|++++++++|+|++||||++ +|+++| +|+
T Consensus        82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~  120 (188)
T COG0693          82 LRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLK  120 (188)
T ss_pred             ccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccC
Confidence            77779999999999999999999999999 999999 775

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.81  E-value=6.4e-20  Score=154.58  Aligned_cols=121  Identities=25%  Similarity=0.324  Sum_probs=102.2

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc-eee------------------cCCCCEEecCccccccccC--------CCccc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL-RVD------------------ACHGVKIVADALVSNCRDA--------CGMPG   53 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~-~v~------------------~~~g~~v~~d~~~~~~~~~--------gG~~~   53 (277)
                      .|++.|+++|+++|++|+++|++++. .+.                  ...|..+.++..+++++..        ||...
T Consensus        23 ~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~~  102 (221)
T cd03141          23 EELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHGP  102 (221)
T ss_pred             HHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCccc
Confidence            48999999999999999999998742 121                  1234457888888887632        77544


Q ss_pred             hhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC------CCCCCC-----------------------------
Q 023800           54 ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK-----------------------------   98 (277)
Q Consensus        54 ~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~-----------------------------   98 (277)
                      .+.++.++.+++||+++++++++|++||+|++ +|+++|      +|+||+                             
T Consensus       103 ~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~-~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~  181 (221)
T cd03141         103 MFDLPDNPDLQDLLREFYENGKVVAAVCHGPA-ALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKEL  181 (221)
T ss_pred             ccccccCHHHHHHHHHHHHcCCEEEEEcchHH-HHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHHHHHc
Confidence            55678999999999999999999999999999 999999      799986                             


Q ss_pred             ----------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           99 ----------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        99 ----------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                                      |+|+||++||.++.+|++++++.|
T Consensus       182 g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         182 GANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             CCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence                            889999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.81  E-value=1e-19  Score=157.86  Aligned_cols=122  Identities=21%  Similarity=0.239  Sum_probs=99.5

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeec-----------------CCCCEEecCcccccc----c----cC------C
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDA-----------------CHGVKIVADALVSNC----R----DA------C   49 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----------------~~g~~v~~d~~~~~~----~----~~------g   49 (277)
                      +|++.|+++|+++||+|+++|++++ ++..                 ..+..+..+..++++    .    ++      |
T Consensus        77 ~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPG  155 (287)
T PRK04155         77 VETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPG  155 (287)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECC
Confidence            4999999999999999999999873 3321                 112223333333322    1    22      8


Q ss_pred             CccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC------CCCCCC-------------------------
Q 023800           50 GMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK-------------------------   98 (277)
Q Consensus        50 G~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~-------------------------   98 (277)
                      |++++..+++++.++++|+++++++|+|+||||||+ +|..+|      +++||+                         
T Consensus       156 G~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~  234 (287)
T PRK04155        156 GHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWL  234 (287)
T ss_pred             CCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccch
Confidence            877788899999999999999999999999999999 899999      999988                         


Q ss_pred             -----------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                                             |||+||++||.++.+|++.+++.|..
T Consensus       235 ~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~  283 (287)
T PRK04155        235 FGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA  283 (287)
T ss_pred             HHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence                                   88999999999999999999999863

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.81  E-value=2.4e-19  Score=159.70  Aligned_cols=112  Identities=22%  Similarity=0.282  Sum_probs=100.5

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG  231 (277)
                      ++++|+|+++|||+.+|+.+++|+|+.++       |+|+++|.+++ +|+++.|+.+.+|..+++.  ++||+|+||||
T Consensus         8 ~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~livpGg   84 (322)
T PRK09393          8 HNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIVIPGW   84 (322)
T ss_pred             cccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEEECCC
Confidence            34799999999999999999999997664       58999999998 9999999999999999864  57999999998


Q ss_pred             cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .. .. ...++.+.+||+++++++++|++||+|++ +||++|||+
T Consensus        85 ~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~  126 (322)
T PRK09393         85 RG-PD-APVPEPLLEALRAAHARGARLCSICSGVF-VLAAAGLLD  126 (322)
T ss_pred             Cc-cc-ccCCHHHHHHHHHHHHcCCEEEEEcHHHH-HHHhccCCC
Confidence            53 33 34588999999999999999999999999 999999997

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.80  E-value=4.8e-19  Score=148.06  Aligned_cols=111  Identities=27%  Similarity=0.416  Sum_probs=92.8

Q ss_pred             CeEEEEec-----CCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchhhh
Q 023800          161 PQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDEA  218 (277)
Q Consensus       161 ~kV~ill~-----~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~~~  218 (277)
                      +||+|++.     +|+++.|+..|++.|+++|++++++|++++.          ++....++.+.++       ..++++
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v   81 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA   81 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence            68999998     9999999999999999999999999998751          2233445555544       578888


Q ss_pred             ccCCccEEEEcCCcchHHh----------hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          219 AKLSYDLIVLPGGLGGAQA----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       219 ~~~~~D~livpGG~~~~~~----------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ++++||+|++|||+.....          ++.++.+.+++++++++||+|++||||++ +|+.+
T Consensus        82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~  144 (217)
T PRK11780         82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKI  144 (217)
T ss_pred             ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHH
Confidence            8889999999999754432          35589999999999999999999999999 89885

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.77  E-value=5.7e-18  Score=161.78  Aligned_cols=116  Identities=14%  Similarity=0.206  Sum_probs=108.5

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +.+||+||++||++..++..+.++|+.+|.++.++|++++ +|+++.|..+.+|.++++.+...||+|+||||......+
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L  674 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL  674 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence            5689999999999999999999999999999999999998 999999999999999998876689999999996556778


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++.+++||+++++++|+|+++|+|++ +|+++||.+
T Consensus       675 ~~d~~al~fL~eaykHgK~IAAiCaG~~-LLaaAGL~~  711 (752)
T PRK11249        675 ADNGDARYYLLEAYKHLKPIALAGDARK-LKAALKLPD  711 (752)
T ss_pred             hhCHHHHHHHHHHHHcCCEEEEeCccHH-HHHhcCCCC
Confidence            8899999999999999999999999999 999999943

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.76  E-value=1.6e-18  Score=146.46  Aligned_cols=107  Identities=22%  Similarity=0.276  Sum_probs=92.9

Q ss_pred             CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceE---------------------EcccCcEEEeCcchhhhccCCccEEE
Q 023800          169 NGSEEMEAVIIIDILRRAKANVVVASVADKLEI---------------------LASCQVKLVADMLIDEAAKLSYDLIV  227 (277)
Q Consensus       169 ~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v---------------------~~~~g~~i~~~~~~~~~~~~~~D~li  227 (277)
                      .|++..|+..|+++|+++|++|+++|++++.++                     .+..+..+.++..+++++.++||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            689999999999999999999999999875111                     12345567788889998889999999


Q ss_pred             EcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC-------CCCC
Q 023800          228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLK  276 (277)
Q Consensus       228 vpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a-------GlL~  276 (277)
                      ||||+.+...+..++.+.++++++++++|+|++||||+. +|+.+       +|++
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~  154 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIK  154 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccC
Confidence            999987677799999999999999999999999999999 89987       7764

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.75  E-value=1.2e-17  Score=137.54  Aligned_cols=125  Identities=35%  Similarity=0.497  Sum_probs=108.9

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCC-ceeecCCC-CEEecCccccccc--cC------CCccchhccccChHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQ-LRVDACHG-VKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ   70 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~-~~v~~~~g-~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~   70 (277)
                      +|++.|+++|+++|++++++++.++ ..+.+..| ..+.++..+++++  ++      ||..++..++.++.+++|+|+|
T Consensus        16 ~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~   95 (188)
T COG0693          16 LELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDF   95 (188)
T ss_pred             hhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHH
Confidence            5899999999999999999999873 35666655 6777778888876  32      8845677777779999999999


Q ss_pred             HhCCCEEEEEchhHHHHHHHcC-CCCCCC----------------------------------CCC-eEcCCCCCCHHHH
Q 023800           71 ASDGRLYAAICVFLAVALGSWG-LLKGLK----------------------------------DGK-VVTTRGPGTPMEF  114 (277)
Q Consensus        71 ~~~g~~i~aiC~g~~~~La~aG-ll~g~~----------------------------------dg~-~iT~~g~~~~~~~  114 (277)
                      +++||+|++|||||+ +|+.+| +++||+                                  ||| ++|+++|.++.+|
T Consensus        96 ~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt~~~p~~~~~~  174 (188)
T COG0693          96 YANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAF  174 (188)
T ss_pred             HHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEEcCCcccHHHH
Confidence            999999999999999 999999 999999                                  777 9999999999999


Q ss_pred             HHHHHHHhcChh
Q 023800          115 VVALVEQLYGKG  126 (277)
Q Consensus       115 a~~li~~l~g~~  126 (277)
                      +..+++.+.+..
T Consensus       175 ~~~~~~~l~~~~  186 (188)
T COG0693         175 ALELLKALGGAE  186 (188)
T ss_pred             HHHHHHHHhccc
Confidence            999999998764

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.74  E-value=6.6e-18  Score=142.82  Aligned_cols=107  Identities=18%  Similarity=0.274  Sum_probs=92.9

Q ss_pred             EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc-----------------ccCcEEEeCcchhhh------ccCC
Q 023800          166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----------------SCQVKLVADMLIDEA------AKLS  222 (277)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~-----------------~~g~~i~~~~~~~~~------~~~~  222 (277)
                      .+.+|+++.|+..|+++|+++|++|+++|++++ .+..                 ..+..+..+..++++      ++++
T Consensus        18 ~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~d   96 (232)
T cd03148          18 LFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSE   96 (232)
T ss_pred             CcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhh
Confidence            346899999999999999999999999999886 3221                 234457778888887      4578


Q ss_pred             ccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCC
Q 023800          223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL  274 (277)
Q Consensus       223 ~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGl  274 (277)
                      ||+|++|||+..+..++.++.+.+++++++++||+|++||||++ +|..+++
T Consensus        97 YDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l  147 (232)
T cd03148          97 YAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARH  147 (232)
T ss_pred             ceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccC
Confidence            99999999987788899999999999999999999999999999 8998988

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PRK04155 chaperone protein HchA; Provisional

Probab=99.74  E-value=1.9e-17  Score=143.67  Aligned_cols=112  Identities=21%  Similarity=0.347  Sum_probs=91.9

Q ss_pred             CCeEEEEec--------------CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc-----------------cCcE
Q 023800          160 SPQILVPIA--------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----------------CQVK  208 (277)
Q Consensus       160 ~~kV~ill~--------------~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~-----------------~g~~  208 (277)
                      .+||+|++.              .|+++.|+..|+++|+++|++|+++|++|+ ++...                 .+..
T Consensus        49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~  127 (287)
T PRK04155         49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK  127 (287)
T ss_pred             CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence            468999886              588999999999999999999999999886 43211                 1222


Q ss_pred             EEeCcchhhh----c--cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          209 LVADMLIDEA----A--KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       209 i~~~~~~~~~----~--~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      +..+..++++    .  +++||+|+||||+.....++.++.+.++|+++++++|+|++||||++ +|+.+|
T Consensus       128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~  197 (287)
T PRK04155        128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAG  197 (287)
T ss_pred             ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcC
Confidence            3333334433    3  57999999999987778899999999999999999999999999999 899998

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.74  E-value=4.6e-18  Score=143.32  Aligned_cols=104  Identities=23%  Similarity=0.303  Sum_probs=90.9

Q ss_pred             cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc--------------------ccCcEEEeCcchhhhccCCccEEE
Q 023800          168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA--------------------SCQVKLVADMLIDEAAKLSYDLIV  227 (277)
Q Consensus       168 ~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~--------------------~~g~~i~~~~~~~~~~~~~~D~li  227 (277)
                      -+|+++.|+..|+++|+++|++|+++|++++ ++..                    ..|..+.++..++++++++||+|+
T Consensus        17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~   95 (221)
T cd03141          17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF   95 (221)
T ss_pred             cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence            3799999999999999999999999999886 3211                    234567888999999888999999


Q ss_pred             EcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       228 vpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      ||||......+..++.+.+||+++++++|+|++||+|++ +|+++|
T Consensus        96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~-~La~ag  140 (221)
T cd03141          96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPA-ALLNVK  140 (221)
T ss_pred             ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHH-HHHhcc
Confidence            999975445577899999999999999999999999999 999999

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.73  E-value=2.3e-17  Score=137.14  Aligned_cols=105  Identities=25%  Similarity=0.372  Sum_probs=87.3

Q ss_pred             cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchhhhccCCccEEEEcC
Q 023800          168 ANGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDEAAKLSYDLIVLPG  230 (277)
Q Consensus       168 ~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpG  230 (277)
                      +|||++.|+..|+++|+++|++++++|++++.          .+....++.+.++       ..++++++++||+|++||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG   90 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG   90 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence            48999999999999999999999999997641          2333456666665       678888888999999999


Q ss_pred             CcchHHhh----------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          231 GLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       231 G~~~~~~~----------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      |+...+.+          +.++.+.++++++++++|+|++||+|++ +|++++
T Consensus        91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~  142 (213)
T cd03133          91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKIL  142 (213)
T ss_pred             CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHh
Confidence            97544333          2478999999999999999999999999 899854

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.70  E-value=7.1e-17  Score=141.28  Aligned_cols=114  Identities=19%  Similarity=0.282  Sum_probs=101.5

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG  231 (277)
                      ++.+|+|+++|+|..+.+..++|.|+.||       |.|.+++.+++ +|.+++|+.|.+|..+++..  .+|++++++|
T Consensus         9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~--~~~~v~v~~g   85 (328)
T COG4977           9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAAP--PIDILPVCGG   85 (328)
T ss_pred             CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCcccccC--cceEEEEecC
Confidence            45689999999999999999999999987       46899999998 99999999999999999864  4999999887


Q ss_pred             cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCCC
Q 023800          232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV  277 (277)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~~  277 (277)
                      .. +......+++..||++.+++|..|++||+|+| +||++||||.
T Consensus        86 ~~-~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf-~LA~aGLLdG  129 (328)
T COG4977          86 LG-PERPVNAPALLAWLRRAARRGARLGGLCTGAF-VLAEAGLLDG  129 (328)
T ss_pred             CC-cccccchHHHHHHHHHHHhcCCeEEEehHhHH-HHHHhcccCC
Confidence            53 44344448999999999999999999999999 9999999983

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.68  E-value=4.7e-16  Score=122.21  Aligned_cols=116  Identities=21%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHhC
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQASD   73 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~~   73 (277)
                      |+..|+++|+.++++++++|+++ .++++++|+.+.++..+++...   +     ||......+..++.+++||++++++
T Consensus        16 e~~~~~~~~~~a~~~v~vvs~~~-~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~   94 (142)
T cd03132          16 ELSALKAALKAAGANVKVVAPTL-GGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKH   94 (142)
T ss_pred             HHHHHHHHHHHCCCEEEEEecCc-CceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhc
Confidence            78899999999999999999997 6899999999999999987642   2     7643344457789999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      +++|++||+|++ +|+++|+|-.  |-+++|++++...  |.-.+++.+.
T Consensus        95 ~~~I~aic~G~~-~La~aGll~~--~~gv~~~~~~~~~--~~~~~~~~~~  139 (142)
T cd03132          95 GKPIGAVGEGSD-LLEAAGIPLE--DPGVVTADDVKDV--FTDRFIDALA  139 (142)
T ss_pred             CCeEEEcCchHH-HHHHcCCCCC--CCcEEEecCcchH--HHHHHHHHHH
Confidence            999999999999 9999999632  4689999966643  5666776653

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.68  E-value=1.1e-16  Score=130.54  Aligned_cols=116  Identities=38%  Similarity=0.624  Sum_probs=104.3

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ++++.|+..+|.+.+|+..|+++|++.|.+|++++++++.+++++.|..+.+|..+.|.-.+.||+++||||..+...+.
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~   84 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS   84 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence            36788898999999999999999999999999999998889999999999999888776668999999999976788899


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  275 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL  275 (277)
                      +.+.+.+.+|+|.+.|++|++||+|+.++|+.-|++
T Consensus        85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~  120 (247)
T KOG2764|consen   85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLL  120 (247)
T ss_pred             hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhcccc
Confidence            999999999999999999999999995256666554

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.67  E-value=2.5e-16  Score=124.50  Aligned_cols=87  Identities=41%  Similarity=0.666  Sum_probs=78.5

Q ss_pred             eEEEEeeCCCceEEcccC---cEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC-HHHHHHHHHHHHcCCcEEEEchh
Q 023800          189 NVVVASVADKLEILASCQ---VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS-KKLVNMLKKQKESNRPYGAICAS  264 (277)
Q Consensus       189 ~v~~vs~~~~~~v~~~~g---~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~-~~~~~~l~~~~~~~~~i~aiC~G  264 (277)
                      +|+++|+..++.++++.|   ..+.++..++++++++||+|++|||..+.+.++.+ +.+.++++++++++|+|++||+|
T Consensus         1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g   80 (147)
T PF01965_consen    1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG   80 (147)
T ss_dssp             EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred             CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence            588999987768999999   99999999999999999999999998667878855 99999999999999999999999


Q ss_pred             hHHhhhhCCCCC
Q 023800          265 PALVLEPHGLLK  276 (277)
Q Consensus       265 ~~~lLa~aGlL~  276 (277)
                      +. +|+++|+|+
T Consensus        81 ~~-~L~~~gll~   91 (147)
T PF01965_consen   81 PA-VLAAAGLLK   91 (147)
T ss_dssp             HH-HHHHTTTTT
T ss_pred             cc-hhhccCccC
Confidence            99 999999996

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.64  E-value=8e-16  Score=127.94  Aligned_cols=96  Identities=23%  Similarity=0.282  Sum_probs=75.1

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc----------eeecCCCCEEecC-------cccccccc--C------CCccchh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCRD--A------CGMPGAT   55 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~d-------~~~~~~~~--~------gG~~~~~   55 (277)
                      .|+++|+++|+++|++|+++|++++.          .+....++.+.++       ..+++++.  +      ||+.++.
T Consensus        17 ~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~   96 (213)
T cd03133          17 HEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAK   96 (213)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhh
Confidence            48999999999999999999997531          3444566666665       66776542  2      8865443


Q ss_pred             cc----------ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 023800           56 NL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK   98 (277)
Q Consensus        56 ~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~   98 (277)
                      ++          +.++.+++++++|+++||+|+|||+||+ +|++++. +||+
T Consensus        97 ~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~  147 (213)
T cd03133          97 NLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVE  147 (213)
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCe
Confidence            33          3589999999999999999999999999 9999766 7775

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.60  E-value=3.6e-15  Score=124.75  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc----------eeecCCCCEEecC-------cccccccc--C------CCccchh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCRD--A------CGMPGAT   55 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~d-------~~~~~~~~--~------gG~~~~~   55 (277)
                      .|+++|+++|+++|++|+++|++++.          ++....++.+.++       ..+++++.  +      ||+.++.
T Consensus        20 ~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~   99 (217)
T PRK11780         20 HEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAK   99 (217)
T ss_pred             hHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhh
Confidence            49999999999999999999997632          2333445555544       56666543  2      8865443


Q ss_pred             ----------ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 023800           56 ----------NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK   98 (277)
Q Consensus        56 ----------~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~   98 (277)
                                .++.++.+++++++|+++||+|+||||||+ +|+.+.. +||+
T Consensus       100 ~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~  150 (217)
T PRK11780        100 NLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVK  150 (217)
T ss_pred             hhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcE
Confidence                      235699999999999999999999999999 8988732 7775

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.29  E-value=3e-11  Score=101.63  Aligned_cols=92  Identities=25%  Similarity=0.340  Sum_probs=73.0

Q ss_pred             CeEEEEecCCCc-hhhHHHHHHHHH-hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH--
Q 023800          161 PQILVPIANGSE-EMEAVIIIDILR-RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--  236 (277)
Q Consensus       161 ~kV~ill~~g~~-~~e~~~~~~~l~-~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~--  236 (277)
                      +||+|+.+||.+ +.|+   +++|+ .+|+++..++.+..                  +  .++||+|++|||....+  
T Consensus         1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~--l~~~D~lvipGG~~~~d~l   57 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------D--LDGVDAVVLPGGFSYGDYL   57 (219)
T ss_pred             CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------C--CCCCCEEEECCCCchhhhh
Confidence            489999999987 5555   77887 79999888865321                  1  24689999999863222  


Q ss_pred             ---hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          237 ---AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       237 ---~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                         ....++.+.+||+++++++++|++||+|.+ +|+++|||+
T Consensus        58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~q-lLa~~GLL~   99 (219)
T PRK03619         58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQ-ILTEAGLLP   99 (219)
T ss_pred             ccchhhhchHHHHHHHHHHHCCCEEEEECHHHH-HHHHcCCCC
Confidence               123457899999999999999999999999 999999996

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.17  E-value=2.5e-10  Score=98.13  Aligned_cols=98  Identities=23%  Similarity=0.329  Sum_probs=72.7

Q ss_pred             CCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      ++||+|+.+||++ +.|.   .++|+++|+++.+++....          .  +.. .  ..++||+|++|||....+.+
T Consensus         3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~----------~--~~~-~--~l~~~DgLvipGGfs~gD~l   64 (261)
T PRK01175          3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL----------A--AER-K--SVSDYDCLVIPGGFSAGDYI   64 (261)
T ss_pred             CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc----------c--ccc-c--chhhCCEEEECCCCCccccc
Confidence            4799999999997 5544   6899999999999876431          0  100 1  13579999999996322322


Q ss_pred             hcC--------HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKS--------KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~--------~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ...        +.+.+.|+++.+++++|.+||.|.+ +|+++|||-
T Consensus        65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLp  109 (261)
T PRK01175         65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLP  109 (261)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCC
Confidence            221        2345888999999999999999999 999999983

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.16  E-value=3.5e-10  Score=108.90  Aligned_cols=116  Identities=11%  Similarity=0.071  Sum_probs=94.6

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHhC
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQASD   73 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~~   73 (277)
                      |+..+.++|+++|.++.++|+.+ .+|+++.|..|.+|.++++.+.   +     ||..+...+..++.++.||++++++
T Consensus       612 ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykH  690 (752)
T PRK11249        612 DLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKH  690 (752)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHc
Confidence            67899999999999999999987 5899999999999999987643   2     7754567788899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      +|+|+++|+|++ +|+++||.+ ..|..++++.+..  -.++-.+++.+
T Consensus       691 gK~IAAiCaG~~-LLaaAGL~~-~~~~g~~~~~~~~--~~~~~~~~~~~  735 (752)
T PRK11249        691 LKPIALAGDARK-LKAALKLPD-QGEEGLVEADSAD--GSFMDELLTAM  735 (752)
T ss_pred             CCEEEEeCccHH-HHHhcCCCC-CCCCeEEecCCcc--HHHHHHHHHHH
Confidence            999999999999 999999965 1235688876322  33445555554

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.07  E-value=1.5e-09  Score=91.90  Aligned_cols=92  Identities=24%  Similarity=0.349  Sum_probs=71.6

Q ss_pred             CeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--
Q 023800          161 PQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--  237 (277)
Q Consensus       161 ~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--  237 (277)
                      +||+|+.++|.+ +.|+.   ++|+.+|+++.++..+..               .+     +++|+|++|||....+.  
T Consensus         1 ~~v~Vl~~~G~n~~~~~~---~al~~~G~~~~~i~~~~~---------------~l-----~~~d~lilpGG~~~~d~~~   57 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTV---YALRLLGVDAEIVWYEDG---------------SL-----PDYDGVVLPGGFSYGDYLR   57 (227)
T ss_pred             CeEEEEeCCCcCcHHHHH---HHHHHCCCeEEEEecCCC---------------CC-----CCCCEEEECCCCccccccc
Confidence            489999999875 55653   888889999888854321               11     35899999998632221  


Q ss_pred             ---hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          238 ---FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       238 ---~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                         +..+..+.++|+++.+++++|.+||.|.+ +|+++|+|+
T Consensus        58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~GlL~   98 (227)
T TIGR01737        58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQ-ILVEAGLLP   98 (227)
T ss_pred             ccchhcchHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCC
Confidence               23356788999999999999999999999 899999985

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.07  E-value=1.6e-09  Score=79.52  Aligned_cols=92  Identities=29%  Similarity=0.474  Sum_probs=76.0

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~  242 (277)
                      |++++.+++...++..+.+.|+.+++++.+++.... ...+             .....+||++++|||.........++
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~   66 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE   66 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence            478889999999999999999999999999999886 4433             12245799999999864333333468


Q ss_pred             HHHHHHHHHHHcCCcEEEEchhhHHhh
Q 023800          243 KLVNMLKKQKESNRPYGAICASPALVL  269 (277)
Q Consensus       243 ~~~~~l~~~~~~~~~i~aiC~G~~~lL  269 (277)
                      .+.+|++++.+++++++++|.|++ +|
T Consensus        67 ~~~~~i~~~~~~~~~i~~~c~g~~-~l   92 (115)
T cd01653          67 ALLALLREAAAAGKPILGICLGAQ-LL   92 (115)
T ss_pred             HHHHHHHHHHHcCCEEEEECchhH-hH
Confidence            999999999999999999999999 55

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=98.95  E-value=3.1e-09  Score=90.55  Aligned_cols=95  Identities=22%  Similarity=0.240  Sum_probs=70.8

Q ss_pred             EEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh--
Q 023800          163 ILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--  239 (277)
Q Consensus       163 V~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~--  239 (277)
                      |+|+.+||.+ +.|   .+++|+++|+++.+++.+..  +.+             ..+.++||.|++|||....+.+.  
T Consensus         1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~   62 (238)
T cd01740           1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG   62 (238)
T ss_pred             CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence            5889999974 444   67888889999999977531  111             11234699999999964333222  


Q ss_pred             ---cCHH-HHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          240 ---KSKK-LVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       240 ---~~~~-~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                         .... +.++++++.+++++|++||.|.. +|+++|+|.
T Consensus        63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~  102 (238)
T cd01740          63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLP  102 (238)
T ss_pred             cccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCc
Confidence               1223 88999999999999999999999 999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.82  E-value=1.9e-08  Score=70.49  Aligned_cols=90  Identities=30%  Similarity=0.462  Sum_probs=71.9

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~  242 (277)
                      ++++..++....++..+.+.+++.++++.+++.... ....             ......+|.+++|||.........++
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~   66 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE   66 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence            467778888888889999999999999999998876 3222             12335799999999864333222468


Q ss_pred             HHHHHHHHHHHcCCcEEEEchhhH
Q 023800          243 KLVNMLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       243 ~~~~~l~~~~~~~~~i~aiC~G~~  266 (277)
                      .+.+|++++++++++|+++|.|++
T Consensus        67 ~~~~~~~~~~~~~~~i~~~~~g~~   90 (92)
T cd03128          67 ALLALLREAAAAGKPVLGICLGAQ   90 (92)
T ss_pred             HHHHHHHHHHHcCCEEEEEecccc
Confidence            999999999999999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.79  E-value=4.3e-08  Score=80.77  Aligned_cols=94  Identities=23%  Similarity=0.381  Sum_probs=72.5

Q ss_pred             CCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      ++||+|+.+||.+ +.|...   +|+++|+++..|..+..               .+.    .+||+|++|||+..-+.+
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~---A~~~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL   59 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAA---AFERAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL   59 (231)
T ss_pred             CceEEEEEcCCcCchHHHHH---HHHHcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence            4799999999964 666554   45589999888866532               111    169999999998543333


Q ss_pred             -----hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 -----AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 -----~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                           ..-+++.+-+++++++|+++.+||+|-. +|.++|||-
T Consensus        60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlP  101 (231)
T COG0047          60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLP  101 (231)
T ss_pred             CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCC
Confidence                 2236889999999999999999999999 899999984

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.75  E-value=3.1e-08  Score=76.88  Aligned_cols=111  Identities=21%  Similarity=0.383  Sum_probs=83.2

Q ss_pred             CCeEEEEe-----cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchhh
Q 023800          160 SPQILVPI-----ANGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDE  217 (277)
Q Consensus       160 ~~kV~ill-----~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~~  217 (277)
                      +|||++++     |||.+..|-+..+-.+.+.|.++..+.++..+          .+....+..++..       ..+..
T Consensus         1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~   80 (217)
T COG3155           1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ   80 (217)
T ss_pred             CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence            47888887     47888899999999999999999999987641          1111122212111       23445


Q ss_pred             hccCCccEEEEcCCcchHHhhh----------cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          218 AAKLSYDLIVLPGGLGGAQAFA----------KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       218 ~~~~~~D~livpGG~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .+++.||++++|||++...++.          -++++..+.+.+++.||+++-+|-.+. +|.+
T Consensus        81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pk  143 (217)
T COG3155          81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPK  143 (217)
T ss_pred             cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHH
Confidence            5678899999999998666542          268999999999999999999999999 6754

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.74  E-value=8.6e-08  Score=79.60  Aligned_cols=92  Identities=20%  Similarity=0.252  Sum_probs=73.0

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFA  239 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~~  239 (277)
                      +||++++.+|........+.+.|+..|++++++..+..                 +++  .+||.|++|||.... ..+.
T Consensus         1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l--~~~d~iii~GG~~~~~~~~~   61 (200)
T PRK13527          1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDL--PDCDALIIPGGESTTIGRLM   61 (200)
T ss_pred             CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHh--ccCCEEEECCCcHHHHHHHH
Confidence            48999999999988888899999999988877755321                 222  469999999985422 1233


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ....+.++|+++.+++++|.+||.|.. +|+++
T Consensus        62 ~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~   93 (200)
T PRK13527         62 KREGILDEIKEKIEEGLPILGTCAGLI-LLAKE   93 (200)
T ss_pred             hhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            445689999999999999999999999 89986

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.63  E-value=1.5e-07  Score=75.87  Aligned_cols=83  Identities=18%  Similarity=0.308  Sum_probs=62.6

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH--hh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--AF  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~--~~  238 (277)
                      +||+|+...|-...    -..+|++.|+++.++...                   +++  ++||.|++|||. ...  .+
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-------------------~~l--~~~D~LILPGG~-~t~~~~l   56 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-------------------NDF--DSIDRLVIPGGE-STTLLNL   56 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-------------------HHH--hCCCEEEECCCh-HHHHHHH
Confidence            68999999985443    567788888876555311                   222  468999999995 333  44


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ..+..+.+.|+++.+ ++++.+||.|.. +|++
T Consensus        57 l~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~   87 (179)
T PRK13526         57 LNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK   87 (179)
T ss_pred             hhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence            555679999999875 789999999999 8998

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.58  E-value=2.4e-07  Score=75.81  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=65.6

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhhhc
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFAK  240 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~~~  240 (277)
                      ||+|+...|....    ..++|++.|.++.++++.                   ++  .+++|+|+||||.... ..+..
T Consensus         1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~-------------------~~--l~~~d~liipGG~~~~~~~l~~   55 (184)
T TIGR03800         1 KIGVLALQGAVRE----HARALEALGVEGVEVKRP-------------------EQ--LDEIDGLIIPGGESTTLSRLLD   55 (184)
T ss_pred             CEEEEEccCCHHH----HHHHHHHCCCEEEEECCh-------------------HH--hccCCEEEECCCCHHHHHHHHH
Confidence            5889998885443    559999999998888542                   12  2468999999996322 12344


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +..+.++|+++.+++++|.+||.|.. +|+++
T Consensus        56 ~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~   86 (184)
T TIGR03800        56 KYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE   86 (184)
T ss_pred             hccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence            55788999999999999999999999 89987

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.58  E-value=2.3e-07  Score=79.70  Aligned_cols=98  Identities=19%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh--
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~--  238 (277)
                      +||+|+.+||.+-..  ..+.+|+.+|+++..|..+.-  .             -.+....+||+|++|||+..-+.+  
T Consensus         2 pkV~Vl~~pGtNce~--e~~~A~~~aG~~~~~v~~~dl--~-------------~~~~~l~~~~~lvipGGFS~gD~l~s   64 (259)
T PF13507_consen    2 PKVAVLRFPGTNCER--ETAAAFENAGFEPEIVHINDL--L-------------SGESDLDDFDGLVIPGGFSYGDYLRS   64 (259)
T ss_dssp             -EEEEEE-TTEEEHH--HHHHHHHCTT-EEEEEECCHH--H-------------TTS--GCC-SEEEE-EE-GGGGTTST
T ss_pred             CEEEEEECCCCCCHH--HHHHHHHHcCCCceEEEEEec--c-------------cccCchhhCcEEEECCccCccccchH
Confidence            589999999975322  345778889999998875420  0             011134579999999987543433  


Q ss_pred             --------hcCHHHHHHHHHHHHc-CCcEEEEchhhHHhhhhCCCCC
Q 023800          239 --------AKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 --------~~~~~~~~~l~~~~~~-~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                              ..++.+.+.|++++++ ++++.+||.|-. +|.++|||.
T Consensus        65 g~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQ-iL~~~Gllp  110 (259)
T PF13507_consen   65 GAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQ-ILVELGLLP  110 (259)
T ss_dssp             THHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHH-HHCCCCCST
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhH-HHHHhCcCC
Confidence                    2245678899999998 999999999999 999999984

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.43  E-value=1.1e-06  Score=72.92  Aligned_cols=76  Identities=22%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhhhcCHHHHHHHHHHHHc
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKES  254 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~~~~~~~~~l~~~~~~  254 (277)
                      ..-++.|+++|.++.++++..+                 +++  .++|+|++|||...  ...+..+..+.+.|+++.++
T Consensus        14 ~e~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~   74 (198)
T cd03130          14 PENLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAES   74 (198)
T ss_pred             HHHHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4456888899999999886422                 122  24899999999632  34566667899999999999


Q ss_pred             CCcEEEEchhhHHhhhhC
Q 023800          255 NRPYGAICASPALVLEPH  272 (277)
Q Consensus       255 ~~~i~aiC~G~~~lLa~a  272 (277)
                      |++|.+||.|.+ +|++.
T Consensus        75 g~pilgICgG~q-lL~~~   91 (198)
T cd03130          75 GGPIYAECGGLM-YLGES   91 (198)
T ss_pred             CCCEEEEcccHH-HHHHH
Confidence            999999999999 89764

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.41  E-value=1.7e-06  Score=71.20  Aligned_cols=86  Identities=21%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFA  239 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~~  239 (277)
                      ++|+|+...|....-    ++.|+.+|.++..++..                   .+  .++||.|++|||.... +...
T Consensus         2 m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~--l~~~dgiii~GG~~~~~~~~~   56 (189)
T PRK13525          2 MKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------ED--LDEIDGLILPGGESTTMGKLL   56 (189)
T ss_pred             CEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hH--hccCCEEEECCCChHHHHHHH
Confidence            689999888644322    46688889888777531                   12  2469999999996322 1233


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ....+.++++++.+++++|.+||.|.. +|+++
T Consensus        57 ~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~   88 (189)
T PRK13525         57 RDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE   88 (189)
T ss_pred             HhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            455678999999999999999999999 89873

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=98.35  E-value=2.3e-06  Score=72.99  Aligned_cols=83  Identities=19%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccc-----cChH-HHHHHHHHHhCCC
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLK-----ESEV-LESIVKKQASDGR   75 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~-----~~~~-~~~~l~~~~~~g~   75 (277)
                      ..++.|+++|+++.+++...  .+..        ...+++++..   ||....+.++     .... +.++++++.++|+
T Consensus        14 ~~~~al~~aG~~v~~v~~~~--~~~~--------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~   83 (238)
T cd01740          14 DMAYAFELAGFEAEDVWHND--LLAG--------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGG   83 (238)
T ss_pred             HHHHHHHHcCCCEEEEeccC--Cccc--------cCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCC
Confidence            35788999999999998764  2222        1123333322   6632222222     1223 8899999999999


Q ss_pred             EEEEEchhHHHHHHHcCCCCCCC
Q 023800           76 LYAAICVFLAVALGSWGLLKGLK   98 (277)
Q Consensus        76 ~i~aiC~g~~~~La~aGll~g~~   98 (277)
                      +|.+||.|.. +|+++|+|.|+.
T Consensus        84 pvlGIC~G~Q-lL~~~gll~g~~  105 (238)
T cd01740          84 LVLGICNGFQ-ILVELGLLPGAL  105 (238)
T ss_pred             eEEEECcHHH-HHHHcCCCcccc
Confidence            9999999999 999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.31  E-value=5e-06  Score=70.72  Aligned_cols=94  Identities=12%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-hh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-FA  239 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-~~  239 (277)
                      +||.|+....++..+..  .++++.+|+++++.....+        -.+ +    .  +.++||+|||.||..+... ..
T Consensus         1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g--------~~~-p----~--~~~~~d~vii~GGp~~~~~~~~   63 (235)
T PRK08250          1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAG--------EAL-P----E--NADGFDLLIVMGGPQSPRTTRE   63 (235)
T ss_pred             CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCC--------CCC-C----C--CccccCEEEECCCCCChhhccc
Confidence            47889888888887764  5566889998888654332        111 1    1  1347999999999543221 11


Q ss_pred             cC-----HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KS-----KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~-----~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..     ....+||+++.+++++|.+||.|.. +||++
T Consensus        64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  100 (235)
T PRK08250         64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA  100 (235)
T ss_pred             cccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            12     4668999999999999999999999 89875

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.29  E-value=3.3e-06  Score=71.05  Aligned_cols=75  Identities=21%  Similarity=0.210  Sum_probs=53.6

Q ss_pred             HHHHH-hCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-----ccccChHHHHHHHHHHhCCCEE
Q 023800            7 IDVLR-RSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY   77 (277)
Q Consensus         7 ~~~l~-~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i   77 (277)
                      +..|+ ..|+++..++.+. .              .+++++..   ||....+     ....++.+.+||+++.++|+++
T Consensus        18 ~~a~~~~~G~~~~~v~~~~-~--------------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~i   82 (219)
T PRK03619         18 ARALRDLLGAEPEYVWHKE-T--------------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPV   82 (219)
T ss_pred             HHHHHhcCCCeEEEEecCc-C--------------CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEE
Confidence            56787 7899988887643 1              12222221   5532111     1234578999999999999999


Q ss_pred             EEEchhHHHHHHHcCCCCCC
Q 023800           78 AAICVFLAVALGSWGLLKGL   97 (277)
Q Consensus        78 ~aiC~g~~~~La~aGll~g~   97 (277)
                      ++||+|++ +|+++|||+|+
T Consensus        83 lgIC~G~q-lLa~~GLL~g~  101 (219)
T PRK03619         83 LGICNGFQ-ILTEAGLLPGA  101 (219)
T ss_pred             EEECHHHH-HHHHcCCCCCe
Confidence            99999999 99999999863

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.26  E-value=7.4e-06  Score=67.99  Aligned_cols=87  Identities=26%  Similarity=0.267  Sum_probs=64.9

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      +||+|+=+.+-+.   ....++|+.+|+++.+++.                   ..++  ++||+|++|||....+....
T Consensus         1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~   56 (200)
T PRK13143          1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN   56 (200)
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence            4678877665444   4567889999999888731                   0122  46999999996322333455


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.+.++++++.++++++.+||.|.. +|+++
T Consensus        57 ~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~   87 (200)
T PRK13143         57 LSPLRDVILEAARSGKPFLGICLGMQ-LLFES   87 (200)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            56789999999999999999999999 89975

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.26  E-value=5.6e-06  Score=68.40  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--  240 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--  240 (277)
                      |+++.++...-  +.....+++..|+++.++++..+                     ++++|.|++|||......+..  
T Consensus         1 ~~~~~y~~~gN--~~~l~~~~~~~G~~~~~~~~~~~---------------------~~~~d~lilpGg~~~~~~~~~~~   57 (194)
T cd01750           1 IAVIRYPDISN--FTDLDPLAREPGVDVRYVEVPEG---------------------LGDADLIILPGSKDTIQDLAWLR   57 (194)
T ss_pred             CEeecCCCccC--HHHHHHHHhcCCceEEEEeCCCC---------------------CCCCCEEEECCCcchHHHHHHHH
Confidence            35666764222  23445666778899988876431                     246899999998643333333  


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      +..+.+.|+++.+++++|.+||.|.. +|++.-
T Consensus        58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~~   89 (194)
T cd01750          58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKYI   89 (194)
T ss_pred             HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhhc
Confidence            45688999999999999999999999 898753

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.20  E-value=1.2e-05  Score=68.37  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=67.4

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-  237 (277)
                      +|++|.|+-....+..  ..+.+.|+..|++++++....+             +....+  ..+||.|||+||..+... 
T Consensus         1 ~m~~ilviqh~~~e~~--g~i~~~L~~~g~~~~v~~~~~~-------------~~~~~~--~~~~d~lii~Ggp~~~~d~   63 (234)
T PRK07053          1 MMKTAVAIRHVAFEDL--GSFEQVLGARGYRVRYVDVGVD-------------DLETLD--ALEPDLLVVLGGPIGVYDD   63 (234)
T ss_pred             CCceEEEEECCCCCCC--hHHHHHHHHCCCeEEEEecCCC-------------ccCCCC--ccCCCEEEECCCCCCCCCC
Confidence            4678888765544443  4578899999999988876433             110111  246999999998532221 


Q ss_pred             --hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 --FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 --~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                        .....++.++|+++.+.++++.+||.|.. +||++
T Consensus        64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a   99 (234)
T PRK07053         64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA   99 (234)
T ss_pred             CcCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence              12234788999999999999999999999 89875

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.16  E-value=1.1e-05  Score=68.68  Aligned_cols=87  Identities=24%  Similarity=0.290  Sum_probs=64.2

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~~  238 (277)
                      ++||+||.+.|-.. |   ..++|++.|.++.+++..                   +++  .++|.||+|||... ...+
T Consensus         1 ~m~igVLa~qG~~~-e---~~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L   55 (248)
T PLN02832          1 MMAIGVLALQGSFN-E---HIAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL   55 (248)
T ss_pred             CcEEEEEeCCCchH-H---HHHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence            36899999998433 2   258888888887666541                   222  36899999998642 2233


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .....+.+.|+++.++|+++.++|.|.. +|++.
T Consensus        56 ~~~~gl~~~I~~~v~~g~PvLGiC~Gmq-lLa~~   88 (248)
T PLN02832         56 AERHNLFPALREFVKSGKPVWGTCAGLI-FLAER   88 (248)
T ss_pred             HhhcchHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            3334688899999999999999999999 89875

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.12  E-value=2e-05  Score=73.54  Aligned_cols=90  Identities=20%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAF  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~  238 (277)
                      .+|+|+-.+-|+. -+..=++.|+..|.++..+++-..                 .++  +++|+|++|||...  ...+
T Consensus       246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~l  305 (451)
T PRK01077        246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAEL  305 (451)
T ss_pred             ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence            5899988774433 223345788888999988876322                 112  36899999999743  3446


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ..+..+.+.|+++.++|++|.++|.|.. +|++
T Consensus       306 ~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~  337 (451)
T PRK01077        306 AANTSMRASIRAAAAAGKPIYAECGGLM-YLGE  337 (451)
T ss_pred             hhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence            6778899999999999999999999999 7876

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=98.08  E-value=1.4e-05  Score=65.42  Aligned_cols=84  Identities=19%  Similarity=0.282  Sum_probs=61.7

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-hhhcC
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AFAKS  241 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~~~~~  241 (277)
                      |+++..+|....-.    +.|++.|.++..+++..                   +  ..++|.|++|||..... .....
T Consensus         1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~--l~~~dgiii~Gg~~~~~~~~~~~   55 (183)
T cd01749           1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------D--LEGIDGLIIPGGESTTIGKLLRR   55 (183)
T ss_pred             CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------H--hccCCEEEECCchHHHHHHHHHh
Confidence            46777776554222    88999999998886521                   1  24689999999863222 12234


Q ss_pred             HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          242 KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+.++|+++.++++++.++|.|.. +|+++
T Consensus        56 ~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~   85 (183)
T cd01749          56 TGLLDPLREFIRAGKPVFGTCAGLI-LLAKE   85 (183)
T ss_pred             CCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            5678999999999999999999999 89874

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=98.03  E-value=2.9e-05  Score=63.71  Aligned_cols=92  Identities=24%  Similarity=0.371  Sum_probs=62.7

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCC---CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--H
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--Q  236 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~---~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--~  236 (277)
                      ||+|+..+....  .....++++.++   ++++++-...+ .            . ..+  .++||.|+++||....  .
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-~------------~-~~~--~~~~dgvil~Gg~~~~~~~   62 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-E------------L-LPD--LDDYDGLVILGGPMSVDED   62 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-C------------C-CCC--cccCCEEEECCCCccCCcc
Confidence            466666654443  556667788877   57766655433 1            0 112  3579999999986433  1


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .....+.+.++|+++.++++++.+||.|.. +|+.+
T Consensus        63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~   97 (188)
T cd01741          63 DYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA   97 (188)
T ss_pred             CChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            112236789999999999999999999999 88763

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.99  E-value=4e-05  Score=78.32  Aligned_cols=105  Identities=17%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhh--ccCCccEEEEcCCcchH
Q 023800          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA--AKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~--~~~~~D~livpGG~~~~  235 (277)
                      ..+||+|+.+||.+ +.|..   .+|.++|+++..+..+.-  ....    +  ..++++.  ...+||+|++|||+..-
T Consensus       976 ~kpkvaIl~~pGtNce~d~a---~Af~~aG~~~~~v~~~dl--~~~~----i--~~s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSA---KAFEKEGAEVNLVIFRNL--NEEA----L--VESVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHH---HHHHHcCCceEEEEEecC--cccc----c--ccchhhhhcccccCcEEEEcCccCcc
Confidence            35799999999975 55554   455569998888875431  0000    0  0111111  13579999999987532


Q ss_pred             Hh----------hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800          236 QA----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  275 (277)
Q Consensus       236 ~~----------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL  275 (277)
                      +.          ...++++.+-+++|+++++++.+||+|-. +|.++|||
T Consensus      1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLl 1093 (1239)
T TIGR01857      1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLL 1093 (1239)
T ss_pred             cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCC
Confidence            22          24467899999999999999999999999 89999998

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=97.92  E-value=5.5e-05  Score=64.06  Aligned_cols=75  Identities=23%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-----ccccChHHHHHHHHHHhCCCEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY   77 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i   77 (277)
                      .++.|++.|+++.++.... ..              +++++..   ||....+     .+..+..+.++++++.++|++|
T Consensus        17 ~~~al~~~G~~~~~i~~~~-~~--------------l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pv   81 (227)
T TIGR01737        17 TVYALRLLGVDAEIVWYED-GS--------------LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPV   81 (227)
T ss_pred             HHHHHHHCCCeEEEEecCC-CC--------------CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEE
Confidence            4678888999988886543 11              2222221   5531111     1233567889999999999999


Q ss_pred             EEEchhHHHHHHHcCCCCC
Q 023800           78 AAICVFLAVALGSWGLLKG   96 (277)
Q Consensus        78 ~aiC~g~~~~La~aGll~g   96 (277)
                      .+||.|.+ +|+++|+|+|
T Consensus        82 lgIC~G~Q-lLa~~GlL~G   99 (227)
T TIGR01737        82 LGICNGFQ-ILVEAGLLPG   99 (227)
T ss_pred             EEECHHHH-HHHHcCCCCC
Confidence            99999999 9999999985

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.91  E-value=5.8e-05  Score=62.85  Aligned_cols=85  Identities=25%  Similarity=0.271  Sum_probs=59.4

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh--c
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--K  240 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~--~  240 (277)
                      |.|+-+.+-+   ...+.+.|++.|.++.++..                   ..++  .+||.|+|||+....+...  .
T Consensus         2 i~~~d~~~~~---~~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~   57 (205)
T PRK13141          2 IAIIDYGMGN---LRSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR   57 (205)
T ss_pred             EEEEEcCCch---HHHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence            4455444333   36678899999998888631                   1222  4699999999642222211  1


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.+.++|+++.++++++.+||.|.+ +|++.
T Consensus        58 ~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~   88 (205)
T PRK13141         58 ERGLDEVIKEAVASGKPLLGICLGMQ-LLFES   88 (205)
T ss_pred             HcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence            23578999999999999999999999 89985

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.91  E-value=7.9e-05  Score=76.74  Aligned_cols=99  Identities=14%  Similarity=0.195  Sum_probs=73.0

Q ss_pred             CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--
Q 023800          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--  235 (277)
Q Consensus       159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--  235 (277)
                      ..+||+|+.+||.+ +.|.   ..+|..+|+++..|..+.  ...+        ..     ...+|+.|++|||+..-  
T Consensus      1036 ~~pkVaVl~~pGtN~~~e~---~~Af~~aGf~~~~V~~~d--l~~~--------~~-----~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206       1036 SKPKVAIIREEGSNGDREM---AAAFYAAGFEPWDVTMSD--LLNG--------RI-----SLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred             CCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEeee--cccc--------cc-----cccceeEEEEcCcCCCccc
Confidence            35799999999975 4444   456668999887776542  1111        11     13469999999997421  


Q ss_pred             --------HhhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhhhCCCCC
Q 023800          236 --------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       236 --------~~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                              ..+..++.+.+.+++|+ +.++.+.+||+|-. +|.+.|||-
T Consensus      1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllP 1146 (1307)
T PLN03206       1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVP 1146 (1307)
T ss_pred             cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCC
Confidence                    23456788999999999 55999999999999 899999983

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.88  E-value=8.3e-05  Score=60.51  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcE
Q 023800          179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPY  258 (277)
Q Consensus       179 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i  258 (277)
                      ..+.++.+|.++.++..+..                .++.+..+||.|+++||...+.   ......++++++.+++++|
T Consensus        12 ~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~Pv   72 (178)
T cd01744          12 ILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPI   72 (178)
T ss_pred             HHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCE
Confidence            47788888998888865432                2222234699999999853332   3467788999999999999


Q ss_pred             EEEchhhHHhhhh
Q 023800          259 GAICASPALVLEP  271 (277)
Q Consensus       259 ~aiC~G~~~lLa~  271 (277)
                      .+||.|.. +|+.
T Consensus        73 lGIC~G~Q-~l~~   84 (178)
T cd01744          73 FGICLGHQ-LLAL   84 (178)
T ss_pred             EEECHHHH-HHHH
Confidence            99999999 7876

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=97.88  E-value=7.3e-05  Score=77.35  Aligned_cols=99  Identities=12%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--
Q 023800          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--  235 (277)
Q Consensus       159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--  235 (277)
                      +.+||+|+.+||.+ +.|..   .+|..+|+++..|..+.-               .-.....++|+.|++|||+..-  
T Consensus      1054 ~~p~vail~~pG~N~~~e~~---~Af~~aGf~~~~v~~~dl---------------~~~~~~l~~~~~lv~~GGFSygD~ 1115 (1310)
T TIGR01735      1054 VRPKVAILREQGVNGDREMA---AAFDRAGFEAWDVHMSDL---------------LAGRVHLDEFRGLAACGGFSYGDV 1115 (1310)
T ss_pred             CCceEEEEECCCCCCHHHHH---HHHHHhCCCcEEEEEecc---------------ccCCcchhheeEEEEcCCCCCccc
Confidence            45799999999976 44544   466689998888865421               0001123468999999986421  


Q ss_pred             --------HhhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhh-hCCCCC
Q 023800          236 --------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLE-PHGLLK  276 (277)
Q Consensus       236 --------~~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa-~aGlL~  276 (277)
                              ..+..++++.+.+++|+ +.++.+.+||+|-. +|. ++|||-
T Consensus      1116 lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp 1165 (1310)
T TIGR01735      1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIP 1165 (1310)
T ss_pred             hhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCC
Confidence                    12455789999999999 88999999999999 898 899873

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=97.87  E-value=6e-05  Score=64.96  Aligned_cols=82  Identities=22%  Similarity=0.333  Sum_probs=55.4

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccC--------hHHHHHHHHHHhC
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKES--------EVLESIVKKQASD   73 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~--------~~~~~~l~~~~~~   73 (277)
                      .+++.|+++|+++.+++... . .        .....+++++..   ||....+.++..        +.+.+.|+++.++
T Consensus        19 e~~~Al~~aG~~v~~v~~~~-~-~--------~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~   88 (261)
T PRK01175         19 ETVKAFRRLGVEPEYVHIND-L-A--------AERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDE   88 (261)
T ss_pred             HHHHHHHHCCCcEEEEeecc-c-c--------ccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHC
Confidence            45789999999999998753 1 0        001123333332   653222222221        2345789999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCC
Q 023800           74 GRLYAAICVFLAVALGSWGLLKGL   97 (277)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~   97 (277)
                      |++|.+||.|.. +|+++|+|.|.
T Consensus        89 gkpVLGICnG~Q-lLa~~GlLpg~  111 (261)
T PRK01175         89 GYPIIGICNGFQ-VLVELGLLPGF  111 (261)
T ss_pred             CCeEEEECHHHH-HHHHCCCCCCC
Confidence            999999999999 99999999873

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.84  E-value=0.00013  Score=62.28  Aligned_cols=96  Identities=14%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-  237 (277)
                      .++||.++.--+++...  ...+.|+..|.+++++.+..+.+         .|    ++  .++||.++|.||..+..+ 
T Consensus         6 ~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~~~---------~p----~~--l~~~dgvii~Ggp~~~~d~   68 (239)
T PRK06490          6 DKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLGDP---------LP----DT--LEDHAGAVIFGGPMSANDP   68 (239)
T ss_pred             CCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCCCC---------CC----Cc--ccccCEEEEECCCCCCCCC
Confidence            35788888765555444  46788889999998886543300         01    12  246999999998543221 


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..-...+.+||+++.+.++++.+||-|.. +||++
T Consensus        69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a  102 (239)
T PRK06490         69 DDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH  102 (239)
T ss_pred             chHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            11124578999999999999999999999 89885

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=97.80  E-value=0.00014  Score=75.35  Aligned_cols=96  Identities=11%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-
Q 023800          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-  236 (277)
                      ..+||+|+.+||.+ +.|.   ..+|..+|+++..+..+.-  ..+        +.     ...+|++|++|||+..-+ 
T Consensus      1034 ~~pkv~il~~pG~N~~~e~---~~Af~~aG~~~~~v~~~dl--~~~--------~~-----~l~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEM---AAAFDRAGFDAIDVHMSDL--LAG--------RV-----TLEDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHH---HHHHHHcCCCeEEEEeecC--cCC--------CC-----ChhhCcEEEECCccCCccc
Confidence            35799999999975 4444   4566689999888775431  011        01     135699999999864222 


Q ss_pred             ---------hhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhhhCC
Q 023800          237 ---------AFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       237 ---------~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa~aG  273 (277)
                               .+..|+.+.+.+++|+ ++++.+.+||+|-. +|.++|
T Consensus      1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg 1141 (1290)
T PRK05297       1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLK 1141 (1290)
T ss_pred             chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhC
Confidence                     2345688999999977 78999999999999 899998

>PHA03366 FGAM-synthase; Provisional

Probab=97.80  E-value=0.00016  Score=74.85  Aligned_cols=98  Identities=10%  Similarity=0.085  Sum_probs=73.2

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH--
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~--  236 (277)
                      ..+||+|+.+||.+-..  ....+|..+|+++..|..+.-           .....     .++|+.|++|||+..-+  
T Consensus      1027 ~~prVaIl~~pG~N~~~--e~~~Af~~aGf~~~~v~~~dL-----------~~~~~-----l~~f~glv~~GGFS~gD~l 1088 (1304)
T PHA03366       1027 KRHRVAVLLLPGCPGPH--ALLAAFTNAGFDPYPVSIEEL-----------KDGTF-----LDEFSGLVIGGSSGAEDSY 1088 (1304)
T ss_pred             CCCeEEEEECCCCCCHH--HHHHHHHHcCCceEEEEeecC-----------CCCCc-----cccceEEEEcCCCCCcccc
Confidence            45799999999976332  334566679999888875431           00011     24689999999875322  


Q ss_pred             --------hhhcCHHHHHHHHHHH-HcCCcEEEEch-hhHHhhhhCCCC
Q 023800          237 --------AFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLL  275 (277)
Q Consensus       237 --------~~~~~~~~~~~l~~~~-~~~~~i~aiC~-G~~~lLa~aGlL  275 (277)
                              .+..|+.+.+.+++|+ ++++.+.+||+ |-. +|++.|+|
T Consensus      1089 ~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll 1136 (1304)
T PHA03366       1089 TGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAV 1136 (1304)
T ss_pred             cHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCc
Confidence                    2356889999999999 56999999999 999 89999998

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=97.78  E-value=0.00014  Score=59.91  Aligned_cols=87  Identities=18%  Similarity=0.339  Sum_probs=61.0

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      +||+|+  |..+.... ...+.|++.|++++++..+..               ..+++  +.||.|+|.||...+.   .
T Consensus         2 ~~ilii--d~~dsf~~-~i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~   58 (190)
T PRK06895          2 TKLLII--NNHDSFTF-NLVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---A   58 (190)
T ss_pred             cEEEEE--eCCCchHH-HHHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---H
Confidence            455554  54444444 489999999999999876432               12222  3589999888754332   2


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.+.++|++ ++.++++.+||-|.. +|+.+
T Consensus        59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~   88 (190)
T PRK06895         59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF   88 (190)
T ss_pred             hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            4567788876 778999999999999 89874

>PRK05665 amidotransferase; Provisional

Probab=97.76  E-value=0.00025  Score=60.47  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             CCccEEEEcCCcchHHh-hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          221 LSYDLIVLPGGLGGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~-~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ++||.+||.||..+... ..--.++.+||++.+++++++.+||-|.. +||++
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence            46999999998532211 11125788999999999999999999999 89874

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.75  E-value=0.00059  Score=61.96  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=91.1

Q ss_pred             CeEcCCCCC---CHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc-CCCCeEEEEecCCCchhhH
Q 023800          101 KVVTTRGPG---TPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF-DNSPQILVPIANGSEEMEA  176 (277)
Q Consensus       101 ~~iT~~g~~---~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kV~ill~~g~~~~e~  176 (277)
                      .+|++.--.   +.++-+-.++++...-+.-.++++.-.  +.+.      .+.+..... ....||+|.. |..-..=+
T Consensus       190 GLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~~~~--~~~~------~~~~~~~~~~~~~~rIAVA~-D~AF~FyY  260 (451)
T COG1797         190 GLVPASERLELEAKLEALAEVVEKHVDLDALLEIASSAG--PLEP------DLSPEPERGNPLGVRIAVAR-DAAFNFYY  260 (451)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHhhCCHHHHHHHHhccC--CCCC------CccccccccCCcCceEEEEe-cchhcccc
Confidence            366665432   345555566666666555555553211  0000      001111111 1226888864 43333334


Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhhhcCHHHHHHHHHHHHc
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKES  254 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~~~~~~~~~l~~~~~~  254 (277)
                      -.-++.|+..|.++..+||-.+                 +++ |++.|+|++|||++-  ...+..++.+.++|+++.+.
T Consensus       261 ~~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~  322 (451)
T COG1797         261 PENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAA  322 (451)
T ss_pred             HHHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHc
Confidence            5567999999999999998654                 222 235899999999852  33467889999999999999


Q ss_pred             CCcEEEEchhhHHhhhh
Q 023800          255 NRPYGAICASPALVLEP  271 (277)
Q Consensus       255 ~~~i~aiC~G~~~lLa~  271 (277)
                      |++|.+=|.|-. .|.+
T Consensus       323 G~piyaECGGlM-YL~~  338 (451)
T COG1797         323 GKPIYAECGGLM-YLGE  338 (451)
T ss_pred             CCceEEecccce-eehh
Confidence            999999999998 6765

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.72  E-value=0.00021  Score=59.69  Aligned_cols=86  Identities=17%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC-cch--HHh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG-LGG--AQA  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~--~~~  237 (277)
                      +||+|+-+..-+..+   ...+|+..|+++.+++.+                   +++  .++|.||+||+ ...  ...
T Consensus         2 ~~v~iid~~~GN~~s---l~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~~   57 (210)
T CHL00188          2 MKIGIIDYSMGNLHS---VSRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMKK   57 (210)
T ss_pred             cEEEEEEcCCccHHH---HHHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHHH
Confidence            689999888555544   467777889988877421                   122  24799999994 311  111


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +. ...+.+.|+++.++++++.+||-|.. +|++.
T Consensus        58 l~-~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~   90 (210)
T CHL00188         58 LE-KKGLITPIKKWIAEGNPFIGICLGLH-LLFET   90 (210)
T ss_pred             HH-HCCHHHHHHHHHHcCCCEEEECHHHH-HHhhc
Confidence            22 23566788888899999999999999 89875

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=97.70  E-value=0.00028  Score=72.74  Aligned_cols=98  Identities=11%  Similarity=0.114  Sum_probs=72.9

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH---
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA---  235 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~---  235 (277)
                      ..+||+|+.+||.+-..  ....+|..+|+++..|..+.-  ..         ...+     ++|+.|++|||+...   
T Consensus       928 ~~p~VaIl~~pG~N~~~--e~~~Af~~aGf~~~~v~~~dl--~~---------~~~l-----~~f~glv~~Ggfsy~D~l  989 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPH--GLLAALTNAGFDPRIVSITEL--KK---------TDFL-----DTFSGLIIGGASGTLDSE  989 (1202)
T ss_pred             CCCeEEEEeCCCCCCHH--HHHHHHHHcCCceEEEEeccC--CC---------CCch-----hheEEEEEcCcCCCCccc
Confidence            35789999999976432  344667779999888876541  00         0111     368999999987522   


Q ss_pred             -------HhhhcCHHHHHHHHHHH-HcCCcEEEEch-hhHHhhhhCCCC
Q 023800          236 -------QAFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLL  275 (277)
Q Consensus       236 -------~~~~~~~~~~~~l~~~~-~~~~~i~aiC~-G~~~lLa~aGlL  275 (277)
                             ..+..++.+.+.+++|+ +.++.+.+||+ |-. +|.+.|+|
T Consensus       990 gsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l 1037 (1202)
T TIGR01739       990 VGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIV 1037 (1202)
T ss_pred             hHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCC
Confidence                   22455789999999999 56999999999 999 89999997

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.69  E-value=6.3e-05  Score=60.03  Aligned_cols=51  Identities=24%  Similarity=0.338  Sum_probs=42.8

Q ss_pred             cCCccEEEEcCCcchHH--hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          220 KLSYDLIVLPGGLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       220 ~~~~D~livpGG~~~~~--~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ++++|+|++|||.+...  .+..+..+.+.|+++.++|.+|.++|.|-. +|.+
T Consensus         5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~-~Lg~   57 (158)
T PF07685_consen    5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQ-YLGE   57 (158)
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHH-HHHH
Confidence            56899999999975333  245577899999999999999999999999 7876

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.66  E-value=0.00029  Score=58.91  Aligned_cols=88  Identities=24%  Similarity=0.256  Sum_probs=56.4

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeE--EEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANV--VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v--~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      ++||+|+=|..-+..++   ..+|++.|+++  .+++                   ..+++  +++|.|||||+......
T Consensus         1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~-------------------~~~~l--~~~d~lIlpG~~~~~~~   56 (209)
T PRK13146          1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTA-------------------DPDAV--AAADRVVLPGVGAFADC   56 (209)
T ss_pred             CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEEC-------------------CHHHh--cCCCEEEECCCCcHHHH
Confidence            36899988776666554   57777888743  3321                   11333  47899999996432221


Q ss_pred             ---hhcCHHHHH-HHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          238 ---FAKSKKLVN-MLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       238 ---~~~~~~~~~-~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                         +... .+.. +++...+.++++.+||.|.. +|+++|
T Consensus        57 ~~~l~~~-~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~   94 (209)
T PRK13146         57 MRGLRAV-GLGEAVIEAVLAAGRPFLGICVGMQ-LLFERG   94 (209)
T ss_pred             HHHHHHC-CcHHHHHHHHHhCCCcEEEECHHHH-HHhhcc
Confidence               1211 2333 44445578999999999999 899984

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.59  E-value=0.00036  Score=50.47  Aligned_cols=88  Identities=24%  Similarity=0.324  Sum_probs=61.9

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEE
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYA   78 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~   78 (277)
                      ++..+.+.|+++++++.+++..+ .....        .....+.+..   ||.........++.++++++++.+++++++
T Consensus        13 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~--------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~   83 (115)
T cd01653          13 ELASPLDALREAGAEVDVVSPDG-GPVES--------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPIL   83 (115)
T ss_pred             hhHHHHHHHHHCCCeEEEEcCCC-Cceec--------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEE
Confidence            45678999999999999999987 34433        1112222211   543222222247899999999999999999


Q ss_pred             EEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHH
Q 023800           79 AICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPM  112 (277)
Q Consensus        79 aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~  112 (277)
                      ++|.|++ +|             ++|.++..+..
T Consensus        84 ~~c~g~~-~l-------------~~~~~~~~~~~  103 (115)
T cd01653          84 GICLGAQ-LL-------------VLGVQFHPEAI  103 (115)
T ss_pred             EECchhH-hH-------------eeeccCChhhh
Confidence            9999999 77             77777766654

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.58  E-value=0.00048  Score=64.25  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAF  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~  238 (277)
                      .+|+++-.+-|+..= ..=++.|+..|.++..+++-.+                 +++  +++|+|++|||...  ...+
T Consensus       245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~l  304 (449)
T TIGR00379       245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEEL  304 (449)
T ss_pred             cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHHH
Confidence            589998776554311 3344677788999988887432                 112  25899999999742  2234


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+..+.+.|+++.++|.+|.++|.|-. +|++.
T Consensus       305 ~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~~  337 (449)
T TIGR00379       305 SQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQS  337 (449)
T ss_pred             HhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence            5577899999999999999999999999 78763

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=97.57  E-value=0.00024  Score=58.75  Aligned_cols=75  Identities=28%  Similarity=0.389  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--hhcCHHHHHHHHHHHH
Q 023800          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAKSKKLVNMLKKQKE  253 (277)
Q Consensus       176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--~~~~~~~~~~l~~~~~  253 (277)
                      +....+.|++.|+++.++...                   .++  +++|.|++||+......  ....+.+.++++++.+
T Consensus        11 ~~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~   69 (198)
T cd01748          11 LRSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIA   69 (198)
T ss_pred             HHHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHH
Confidence            345568888899988887521                   122  35899999996322221  1123457899999999


Q ss_pred             cCCcEEEEchhhHHhhhhC
Q 023800          254 SNRPYGAICASPALVLEPH  272 (277)
Q Consensus       254 ~~~~i~aiC~G~~~lLa~a  272 (277)
                      ++++|.+||.|.. +|+++
T Consensus        70 ~~~pilGiC~G~q-~l~~~   87 (198)
T cd01748          70 SGKPFLGICLGMQ-LLFES   87 (198)
T ss_pred             CCCcEEEECHHHH-Hhccc
Confidence            9999999999999 89987

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=97.52  E-value=0.00024  Score=58.80  Aligned_cols=73  Identities=23%  Similarity=0.257  Sum_probs=53.1

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      -++.|++.|+++.++|+..+.              .+.+++..   ||.+.  +..++++..+.+.|+++.++|++|.+|
T Consensus        16 ~~~~l~~~G~~v~~~s~~~~~--------------~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgI   81 (198)
T cd03130          16 NLELLEAAGAELVPFSPLKDE--------------ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAE   81 (198)
T ss_pred             HHHHHHHCCCEEEEECCCCCC--------------CCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEE
Confidence            467889999999999974211              11221111   66422  345667778999999999999999999


Q ss_pred             chhHHHHHHHcCC
Q 023800           81 CVFLAVALGSWGL   93 (277)
Q Consensus        81 C~g~~~~La~aGl   93 (277)
                      |.|.+ +|++.-.
T Consensus        82 CgG~q-lL~~~~~   93 (198)
T cd03130          82 CGGLM-YLGESLD   93 (198)
T ss_pred             cccHH-HHHHHhh
Confidence            99999 8988654

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=97.51  E-value=0.00045  Score=56.69  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcC
Q 023800          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN  255 (277)
Q Consensus       176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~  255 (277)
                      .....++|++.|++++++..+..                .+++..-++|.|++|||....    .+.....|++...+.+
T Consensus        11 ~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~----~~~~~~~~i~~~~~~~   70 (188)
T TIGR00888        11 TQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSV----YAENAPRADEKIFELG   70 (188)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCc----CcCCchHHHHHHHhCC
Confidence            44566888889998888765421                222221236799999985321    2234567889889999


Q ss_pred             CcEEEEchhhHHhhhhC
Q 023800          256 RPYGAICASPALVLEPH  272 (277)
Q Consensus       256 ~~i~aiC~G~~~lLa~a  272 (277)
                      ++|.+||.|.. +|+.+
T Consensus        71 ~PilGIC~G~Q-ll~~~   86 (188)
T TIGR00888        71 VPVLGICYGMQ-LMAKQ   86 (188)
T ss_pred             CCEEEECHHHH-HHHHh
Confidence            99999999999 89874

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.49  E-value=0.00083  Score=57.25  Aligned_cols=96  Identities=15%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             CCeEEEEecCCCch--h-hHHHHHHHHH----hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCc
Q 023800          160 SPQILVPIANGSEE--M-EAVIIIDILR----RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL  232 (277)
Q Consensus       160 ~~kV~ill~~g~~~--~-e~~~~~~~l~----~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~  232 (277)
                      |+|++||..+.-.+  . ......+.|.    ..+.+++++.+..+              ..+.+  ..+||.|||.||.
T Consensus         1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~--~~~~dgvvi~Gg~   64 (237)
T PRK09065          1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPA--PDDFAGVIITGSW   64 (237)
T ss_pred             CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCC--hhhcCEEEEeCCC
Confidence            35688887654221  1 1222344443    45777777655433              11122  2469999999985


Q ss_pred             chHHh-hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          233 GGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       233 ~~~~~-~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..... ..-...+.+||+++.+++++|.+||-|.. +|+.+
T Consensus        65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  104 (237)
T PRK09065         65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAHA  104 (237)
T ss_pred             cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence            32111 11125678999999999999999999999 89874

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.47  E-value=0.00079  Score=56.46  Aligned_cols=79  Identities=13%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~  256 (277)
                      ....+.++..|+++.++..+.. ..           ....+. ...||.|||.||...+.   +.....+|++++.++++
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~~~-~~-----------~~~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~   77 (214)
T PRK07765         14 FNLVQYLGQLGVEAEVWRNDDP-RL-----------ADEAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT   77 (214)
T ss_pred             HHHHHHHHHcCCcEEEEECCCc-CH-----------HHHHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence            3466888999999999876532 00           111211 24699999999864333   23455689999999999


Q ss_pred             cEEEEchhhHHhhhhC
Q 023800          257 PYGAICASPALVLEPH  272 (277)
Q Consensus       257 ~i~aiC~G~~~lLa~a  272 (277)
                      +|.+||-|.. +|+.+
T Consensus        78 PiLGIC~G~Q-lla~a   92 (214)
T PRK07765         78 PLLGVCLGHQ-AIGVA   92 (214)
T ss_pred             CEEEEccCHH-HHHHH
Confidence            9999999999 88763

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.42  E-value=0.00077  Score=54.09  Aligned_cols=85  Identities=24%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCC-CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAK-ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAF  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~-~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~~  238 (277)
                      +||+++.+.|--.    .=++++++++ .++..+                   ...+++  +..|.||||||... ...+
T Consensus         1 m~IGVLalQG~v~----EH~~~l~~~~~~e~~~V-------------------k~~~dL--~~~d~LIiPGGESTTi~rL   55 (194)
T COG0311           1 MKIGVLALQGAVE----EHLEALEKAGGAEVVEV-------------------KRPEDL--EGVDGLIIPGGESTTIGRL   55 (194)
T ss_pred             CeEEEEEecccHH----HHHHHHHhhcCCceEEE-------------------cCHHHh--ccCcEEEecCccHHHHHHH
Confidence            5799999887432    3346667775 333222                   122343  45799999999632 3334


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ...-.+.+-|+++..+|+++.+.|.|.. +||+
T Consensus        56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGlI-lLak   87 (194)
T COG0311          56 LKRYGLLEPLREFIADGLPVFGTCAGLI-LLAK   87 (194)
T ss_pred             HHHcCcHHHHHHHHHcCCceEEechhhh-hhhh
Confidence            5556788899999999999999999999 8996

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.42  E-value=0.001  Score=54.36  Aligned_cols=88  Identities=24%  Similarity=0.324  Sum_probs=61.7

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC-Ccc--hHH
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GLG--GAQ  236 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-G~~--~~~  236 (277)
                      +++|+|+=|.--++   .....+|+++|+++.+.+. .                  +++  ...|.||+|| |..  .+.
T Consensus         1 m~~i~IIDyg~GNL---~Sv~~Aler~G~~~~vs~d-~------------------~~i--~~AD~liLPGVGaf~~am~   56 (204)
T COG0118           1 MMMVAIIDYGSGNL---RSVKKALERLGAEVVVSRD-P------------------EEI--LKADKLILPGVGAFGAAMA   56 (204)
T ss_pred             CCEEEEEEcCcchH---HHHHHHHHHcCCeeEEecC-H------------------HHH--hhCCEEEecCCCCHHHHHH
Confidence            36788887665554   4556777788877755432 1                  222  3579999999 532  233


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      .+... .+.+.|++..+.++++.+||-|.. +|.+-+
T Consensus        57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-lLfe~S   91 (204)
T COG0118          57 NLRER-GLIEAIKEAVESGKPFLGICLGMQ-LLFERS   91 (204)
T ss_pred             HHHhc-chHHHHHHHHhcCCCEEEEeHhHH-hhhhcc
Confidence            33333 789999999999999999999999 787654

>PRK00784 cobyric acid synthase; Provisional

Probab=97.39  E-value=0.0006  Score=64.28  Aligned_cols=87  Identities=17%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHh-CCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--  237 (277)
                      .||+|+-+|...-.   .=++.|+. +|+++.++++..                   ++  +++|.|++|||......  
T Consensus       252 ~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~~~  307 (488)
T PRK00784        252 LRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIADLA  307 (488)
T ss_pred             eEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHHHH
Confidence            58999987742222   44577776 888888887522                   12  25799999998643222  


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +..+..+.+.|+++.++|++|.++|.|-. +|++.
T Consensus       308 ~~~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~~  341 (488)
T PRK00784        308 WLRESGWDEAIRAHARRGGPVLGICGGYQ-MLGRR  341 (488)
T ss_pred             HHHHcCHHHHHHHHHHcCCeEEEECHHHH-HHhhh
Confidence            23455688999999999999999999999 89874

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=97.38  E-value=0.00089  Score=54.94  Aligned_cols=87  Identities=10%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~  244 (277)
                      |++.|+++.... -..+.|++.|.++.++..+..               +++++...++|.||+-||...+.+   ....
T Consensus         2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~---~~~~   62 (187)
T PRK08007          2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDE---AGIS   62 (187)
T ss_pred             EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHH---CCcc
Confidence            455666655553 467788888999988865421               233333346899999998655543   2334


Q ss_pred             HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+++. ++.++||.+||-|.. +||.+
T Consensus        63 ~~~~~~-~~~~~PiLGIClG~Q-~la~a   88 (187)
T PRK08007         63 LDVIRH-YAGRLPILGVCLGHQ-AMAQA   88 (187)
T ss_pred             HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            556665 568899999999999 89874

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.31  E-value=0.00038  Score=57.13  Aligned_cols=79  Identities=23%  Similarity=0.329  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcC
Q 023800          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN  255 (277)
Q Consensus       176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~  255 (277)
                      .......+++.|.+++++..+..             .....+ +..+||.|+|+||.....   +.+....+++++.+++
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~-------------~~~~~~-~~~~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~   72 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSD-------------FEEPLE-DLDDYDGIIISGGPGSPY---DIEGLIELIREARERK   72 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGG-------------HHHHHH-HTTTSSEEEEECESSSTT---SHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCeEEEEECCCc-------------hhhhhh-hhcCCCEEEECCcCCccc---cccccccccccccccc
Confidence            34567888888988888876532             001111 246799999999864332   2577888899999999


Q ss_pred             CcEEEEchhhHHhhhhC
Q 023800          256 RPYGAICASPALVLEPH  272 (277)
Q Consensus       256 ~~i~aiC~G~~~lLa~a  272 (277)
                      +++.+||-|.. +||.+
T Consensus        73 ~PilGIC~G~Q-~la~~   88 (192)
T PF00117_consen   73 IPILGICLGHQ-ILAHA   88 (192)
T ss_dssp             SEEEEETHHHH-HHHHH
T ss_pred             eEEEEEeehhh-hhHHh
Confidence            99999999999 88863

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK05670 anthranilate synthase component II; Provisional

Probab=97.27  E-value=0.0017  Score=53.33  Aligned_cols=86  Identities=17%  Similarity=0.212  Sum_probs=56.7

Q ss_pred             EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHH
Q 023800          166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV  245 (277)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~  245 (277)
                      ++.|.. ++=.....+.|++.|++++++..+.. .           ...+++   .++|.||+.||..++.+   .....
T Consensus         3 liid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~---~~~dglIlsgGpg~~~d---~~~~~   63 (189)
T PRK05670          3 LLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEA---LNPDAIVLSPGPGTPAE---AGISL   63 (189)
T ss_pred             EEEECC-CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHh---CCCCEEEEcCCCCChHH---cchHH
Confidence            344433 33345678889999999999877532 0           011222   34899999887644432   23455


Q ss_pred             HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          246 NMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       246 ~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .++++ ...+++|.+||-|.. +|+.+
T Consensus        64 ~~l~~-~~~~~PvLGIClG~Q-lla~a   88 (189)
T PRK05670         64 ELIRE-FAGKVPILGVCLGHQ-AIGEA   88 (189)
T ss_pred             HHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            67765 467799999999999 88864

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.27  E-value=0.0011  Score=54.54  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=53.9

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--------------hhcCH
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--------------FAKSK  242 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--------------~~~~~  242 (277)
                      ......|+..|..+.++..... .            ..+... ...+|.|++|||......              ...+.
T Consensus        22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~~-l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~   87 (189)
T cd01745          22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQY-LELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA   87 (189)
T ss_pred             HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHHH-HhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence            4567788888988877755432 0            111111 246899999998532111              11122


Q ss_pred             HHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          243 KLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       243 ~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...++++++.+.+++|.+||.|.. +|+.+
T Consensus        88 ~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~  116 (189)
T cd01745          88 FELALLRAALERGKPILGICRGMQ-LLNVA  116 (189)
T ss_pred             HHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence            447889999999999999999999 78763

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.26  E-value=0.0013  Score=54.34  Aligned_cols=75  Identities=24%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHH--HHHHHHHHHH
Q 023800          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKK--LVNMLKKQKE  253 (277)
Q Consensus       176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~--~~~~l~~~~~  253 (277)
                      +....+.|+..|.++.++..+                   .++  +++|.|++||+....+.....+.  ...+++++++
T Consensus        11 ~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~   69 (196)
T TIGR01855        11 LGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENGLDLFVELVVR   69 (196)
T ss_pred             HHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHh
Confidence            456677788888888777521                   112  36899999995321221111111  3344477889


Q ss_pred             cCCcEEEEchhhHHhhhhC
Q 023800          254 SNRPYGAICASPALVLEPH  272 (277)
Q Consensus       254 ~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+++|.+||.|.. +|+++
T Consensus        70 ~~~pvlGiC~G~Q-ll~~~   87 (196)
T TIGR01855        70 LGKPVLGICLGMQ-LLFER   87 (196)
T ss_pred             CCCCEEEECHHHH-Hhhhc
Confidence            9999999999999 89997

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.24  E-value=0.00027  Score=57.10  Aligned_cols=50  Identities=22%  Similarity=0.349  Sum_probs=37.7

Q ss_pred             CCccEEEEcCCcch-HHhhhcCHHHHHHHHHHHHcC-CcEEEEchhhHHhhhh
Q 023800          221 LSYDLIVLPGGLGG-AQAFAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP  271 (277)
Q Consensus       221 ~~~D~livpGG~~~-~~~~~~~~~~~~~l~~~~~~~-~~i~aiC~G~~~lLa~  271 (277)
                      ++.|.||+|||... ...+.....+.+-||++.+.| ++|.+.|.|.. +||+
T Consensus        32 ~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlI-lLa~   83 (188)
T PF01174_consen   32 EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLI-LLAK   83 (188)
T ss_dssp             TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHH-HHEE
T ss_pred             ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHH-Hhhh
Confidence            35799999999632 233455568999999999998 99999999999 8987

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=97.24  E-value=0.0018  Score=53.09  Aligned_cols=86  Identities=14%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHH
Q 023800          166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV  245 (277)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~  245 (277)
                      ++.|..+... ....+.|+..|+++.++..+..               .++++...++|.||+.||...+.+   .....
T Consensus         3 l~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~~   63 (188)
T TIGR00566         3 LMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGISL   63 (188)
T ss_pred             EEEECCcCHH-HHHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchhH
Confidence            4445443333 3466778888999887765431               123333235899999888654432   23346


Q ss_pred             HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          246 NMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       246 ~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ++++++ +++++|.+||.|-. +|+.+
T Consensus        64 ~~i~~~-~~~~PvLGIC~G~Q-ll~~~   88 (188)
T TIGR00566        64 EAIRHF-AGKLPILGVCLGHQ-AMGQA   88 (188)
T ss_pred             HHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence            778776 67899999999999 88764

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.23  E-value=0.0022  Score=54.84  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=54.9

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCe---EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~---v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      ++|+|+-....+........++|++.+..   ++++....+             +....  +.++||.|||.||..+...
T Consensus         2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~~dgvIi~Gg~~~~~d   66 (242)
T PRK07567          2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-------------PLPDL--DLDDYSGVIVGGSPFNVSD   66 (242)
T ss_pred             CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-------------CCCCC--CHhhccEEEEcCCCCcCCC
Confidence            45666655433332235566777777654   444433222             00001  2356999999998532211


Q ss_pred             h--hcCH-------HHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 F--AKSK-------KLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 ~--~~~~-------~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .  ...+       .+.++++...+++++|.+||-|.. +|+.+
T Consensus        67 ~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a  109 (242)
T PRK07567         67 PAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH  109 (242)
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence            1  0111       233455555589999999999999 89875

>PLN02335 anthranilate synthase

Probab=97.22  E-value=0.0026  Score=53.62  Aligned_cols=91  Identities=10%  Similarity=0.093  Sum_probs=59.1

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +.++|+++  |..+ .-.....+.|++.|+++.++..+..               .++++...++|.|+|-||...+.+.
T Consensus        17 ~~~~ilvi--D~~d-sft~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d~   78 (222)
T PLN02335         17 QNGPIIVI--DNYD-SFTYNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQDS   78 (222)
T ss_pred             ccCcEEEE--ECCC-CHHHHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhhc
Confidence            34677776  4333 3334578889999999999965321               2232222358999999986544422


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                         ....+++++ ...++||.+||-|.. +|+.+
T Consensus        79 ---~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~a  107 (222)
T PLN02335         79 ---GISLQTVLE-LGPLVPLFGVCMGLQ-CIGEA  107 (222)
T ss_pred             ---cchHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence               223455553 456799999999999 88863

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=97.21  E-value=0.0023  Score=52.63  Aligned_cols=87  Identities=9%  Similarity=0.171  Sum_probs=58.2

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~  244 (277)
                      |++.|..+... .-..+.|++.|+++.++..+..               .++++...++|.||+-||...+.+   ....
T Consensus         2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~---~~~~   62 (191)
T PRK06774          2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNE---AGIS   62 (191)
T ss_pred             EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHh---CCCc
Confidence            34455544433 3467888889999998876531               233343346899999998654442   2234


Q ss_pred             HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+++. ++.+++|.+||-|.. +|+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIC~G~Q-lla~~   88 (191)
T PRK06774         63 LAVIRH-FADKLPILGVCLGHQ-ALGQA   88 (191)
T ss_pred             hHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            455554 577899999999999 89875

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.17  E-value=0.0028  Score=52.44  Aligned_cols=85  Identities=25%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh--hc
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--AK  240 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~--~~  240 (277)
                      |+|+=+..-+..++   ...|+..|+++.++..                   .+++  .++|.||+||+.......  ..
T Consensus         2 i~vid~g~gn~~~~---~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~   57 (199)
T PRK13181          2 IAIIDYGAGNLRSV---ANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLR   57 (199)
T ss_pred             EEEEeCCCChHHHH---HHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            34443333344333   4577888888877621                   1222  358999999963222211  11


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...+.++|+++.+.+++|.+||.|.. +|+++
T Consensus        58 ~~~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~   88 (199)
T PRK13181         58 ESGLDEALKEHVEKKQPVLGICLGMQ-LLFES   88 (199)
T ss_pred             HCChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence            23567899999999999999999999 89986

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.16  E-value=0.002  Score=58.17  Aligned_cols=87  Identities=21%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      +||+++=+ |+.    ...+..|.+.|.++.++..+.                .++++...++|.|+++||...+..   
T Consensus       178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~---  233 (360)
T PRK12564        178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA---  233 (360)
T ss_pred             CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH---
Confidence            56776643 332    347788888999998886542                123332235899999998644432   


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+...++++++.++++||.+||.|.. +|+.+
T Consensus       234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a  264 (360)
T PRK12564        234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA  264 (360)
T ss_pred             HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            36778899999988999999999999 78763

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=97.15  E-value=0.00073  Score=55.28  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCccch--hccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGA--TNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~--~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      ...+.|++.|+++.+++...  .+....++-+.           ||. ..  ..+..+..+.++|+++.++|+++.+||.
T Consensus        13 e~~~~l~~~g~~~~~v~~~~--~l~~~d~liip-----------GG~-~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~   78 (184)
T TIGR03800        13 EHARALEALGVEGVEVKRPE--QLDEIDGLIIP-----------GGE-STTLSRLLDKYGMFEPLRNFILSGLPVFGTCA   78 (184)
T ss_pred             HHHHHHHHCCCEEEEECChH--HhccCCEEEEC-----------CCC-HHHHHHHHHhccHHHHHHHHHHcCCcEEEECH
Confidence            35678888999888887632  11111111111           663 22  2334556788999999999999999999


Q ss_pred             hHHHHHHHc
Q 023800           83 FLAVALGSW   91 (277)
Q Consensus        83 g~~~~La~a   91 (277)
                      |.. +|+++
T Consensus        79 G~q-lL~~~   86 (184)
T TIGR03800        79 GLI-MLAKE   86 (184)
T ss_pred             HHH-HHHhh
Confidence            999 89988

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.08  E-value=0.0024  Score=52.75  Aligned_cols=83  Identities=20%  Similarity=0.337  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC-CcchHHhhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GLGGAQAFA  239 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-G~~~~~~~~  239 (277)
                      ++|+|+=+-.-+...   ...+|++.|.+++++...                   +++  .++|.||+|| |.. .....
T Consensus         1 m~i~iid~g~gn~~s---~~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~~-~~~~~   55 (196)
T PRK13170          1 MNVVIIDTGCANLSS---VKFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGTA-QAAMD   55 (196)
T ss_pred             CeEEEEeCCCchHHH---HHHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCch-HHHHH
Confidence            356766554444444   344778888888777321                   222  3578999999 542 22111


Q ss_pred             c--CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 K--SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~--~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .  ...+.++++   +.+++|.+||.|.. +|+++
T Consensus        56 ~l~~~~l~~~i~---~~~~PilGIClG~Q-ll~~~   86 (196)
T PRK13170         56 QLRERELIDLIK---ACTQPVLGICLGMQ-LLGER   86 (196)
T ss_pred             HHHHcChHHHHH---HcCCCEEEECHHHH-HHhhh
Confidence            1  123444444   45899999999999 89976

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=97.07  E-value=0.0033  Score=51.78  Aligned_cols=87  Identities=11%  Similarity=0.134  Sum_probs=57.8

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~  244 (277)
                      |++.|+++.... -..+.|++.|+++.++..+..               .+.++...++|.+++-||...+.+   +...
T Consensus         2 il~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~~---~~~~   62 (193)
T PRK08857          2 LLMIDNYDSFTY-NLYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPNE---AGIS   62 (193)
T ss_pred             EEEEECCCCcHH-HHHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChHH---Ccch
Confidence            455565554443 477888999999999976532               111111234788999888644432   3334


Q ss_pred             HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+++. .+.+++|.+||-|.. +|+.+
T Consensus        63 ~~~i~~-~~~~~PiLGIClG~Q-lia~a   88 (193)
T PRK08857         63 LQAIEH-FAGKLPILGVCLGHQ-AIAQV   88 (193)
T ss_pred             HHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            566765 578999999999999 88874

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.04  E-value=0.0025  Score=47.72  Aligned_cols=86  Identities=21%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhhh
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFA  239 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~  239 (277)
                      +|+|.--+|.+..-+......|+..- +++.++.+-           |. +..+.    .++|.|++|||...  +..+.
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~-----------I~-~~~~~----~~ad~lVlPGGa~~~~~~~L~   63 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE-----------LA-VGPWE----SKTALLVVPGGADLPYCRALN   63 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH-----------Hh-cCchh----hCCCEEEECCCChHHHHHHHH
Confidence            36677777888888888888887754 444443321           00 11111    36899999998532  22222


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~  266 (277)
                       ... .+.|+++.++++++.+||.|+.
T Consensus        64 -~~g-~~~i~~~v~~g~p~LGIClGAy   88 (114)
T cd03144          64 -GKG-NRRIRNFVRNGGNYLGICAGAY   88 (114)
T ss_pred             -hhC-cHHHHHHHHCCCcEEEEecCcc
Confidence             223 7888998999999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.03  E-value=0.0026  Score=51.73  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~  256 (277)
                      ....+.|+..|.++.++..+..                .++.+..++|.|++|||...... ...+.+   .+...+.++
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~~---~~~~~~~~~   71 (181)
T cd01742          12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPRV---DPEIFELGV   71 (181)
T ss_pred             HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccchh---hHHHHhcCC
Confidence            3467888889998888865431                11122357999999998532211 112233   344456699


Q ss_pred             cEEEEchhhHHhhhhC
Q 023800          257 PYGAICASPALVLEPH  272 (277)
Q Consensus       257 ~i~aiC~G~~~lLa~a  272 (277)
                      ++.+||.|.. +|+.+
T Consensus        72 PilGIC~G~Q-ll~~~   86 (181)
T cd01742          72 PVLGICYGMQ-LIAKA   86 (181)
T ss_pred             CEEEEcHHHH-HHHHh
Confidence            9999999999 89874

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.00  E-value=0.00095  Score=54.02  Aligned_cols=40  Identities=18%  Similarity=0.099  Sum_probs=31.6

Q ss_pred             CCccchh--ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           49 CGMPGAT--NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        49 gG~~~~~--~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      || .+..  .+.++..+.+.|+++.+ ++++.+||.|+. +|++.
T Consensus        47 GG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~~   88 (179)
T PRK13526         47 GG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSKG   88 (179)
T ss_pred             CC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHcc
Confidence            77 3443  45556679999999885 789999999999 89983

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=97.00  E-value=0.0035  Score=51.18  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=51.1

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~  257 (277)
                      ...+.|++.|+++.++..+..             +....+  ...+|.||+.||.....   .. .....+++...++++
T Consensus        13 ~~~~~l~~~G~~~~~~~~~~~-------------~~~~~~--~~~~dgvil~gG~~~~~---~~-~~~~~i~~~~~~~~P   73 (184)
T cd01743          13 NLVQYLRELGAEVVVVRNDEI-------------TLEELE--LLNPDAIVISPGPGHPE---DA-GISLEIIRALAGKVP   73 (184)
T ss_pred             HHHHHHHHcCCceEEEeCCCC-------------CHHHHh--hcCCCEEEECCCCCCcc---cc-hhHHHHHHHHhcCCC
Confidence            456788889999999987643             111112  24699999977643221   12 245556666678899


Q ss_pred             EEEEchhhHHhhhhC
Q 023800          258 YGAICASPALVLEPH  272 (277)
Q Consensus       258 i~aiC~G~~~lLa~a  272 (277)
                      |.+||-|.. +|+.+
T Consensus        74 vlGIC~G~Q-lla~~   87 (184)
T cd01743          74 ILGVCLGHQ-AIAEA   87 (184)
T ss_pred             EEEECHhHH-HHHHH
Confidence            999999999 89874

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.00  E-value=0.0069  Score=57.53  Aligned_cols=88  Identities=14%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh-
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF-  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~-  238 (277)
                      .++|+|+=|-.-+..++   ...|++.|+++.++..                   .+++  ..+|.||+||+......+ 
T Consensus         6 ~~~i~iiDyG~GN~~sl---~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m~   61 (538)
T PLN02617          6 DSEVTLLDYGAGNVRSV---RNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAMD   61 (538)
T ss_pred             CCeEEEEECCCCCHHHH---HHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHHH
Confidence            46888876655555444   5777778888866631                   0122  468999999964322211 


Q ss_pred             -hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 -~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                       .....+.+.|+++.+.++++.+||.|.. +|+++
T Consensus        62 ~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         62 VLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             HHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence             1223477889999999999999999999 89975

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.99  E-value=0.0026  Score=43.71  Aligned_cols=74  Identities=24%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             hhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEE
Q 023800            3 AVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         3 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      +..+.+.+++.++++.+++.... ....        .....+.+..   ||.........++.+.+|++++..+|+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (92)
T cd03128          14 LASPLDALREAGAEVDVVSPDGG-PVES--------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLG   84 (92)
T ss_pred             eecHHHHHHhCCCEEEEEeCCCC-cccc--------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence            45678899999999999998863 2222        1111222211   4422222222468999999999999999999


Q ss_pred             EchhHH
Q 023800           80 ICVFLA   85 (277)
Q Consensus        80 iC~g~~   85 (277)
                      +|.|++
T Consensus        85 ~~~g~~   90 (92)
T cd03128          85 ICLGAQ   90 (92)
T ss_pred             Eecccc
Confidence            999987

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=96.98  E-value=0.0039  Score=51.47  Aligned_cols=87  Identities=9%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~  244 (277)
                      |++.|..+... ....+.|++.|+++.++..+..               .++++...++|.||+-||...+..   ....
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~---~~~~   62 (195)
T PRK07649          2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNE---AGIS   62 (195)
T ss_pred             EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHh---CCCc
Confidence            34455544443 3478889999999988875421               123333346899999998654443   2234


Q ss_pred             HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...++. ++.++|+.+||-|.. +|+.+
T Consensus        63 ~~~i~~-~~~~~PvLGIClG~Q-lla~~   88 (195)
T PRK07649         63 MEVIRY-FAGKIPIFGVCLGHQ-SIAQV   88 (195)
T ss_pred             hHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            455554 457899999999999 89874

>CHL00101 trpG anthranilate synthase component 2

Probab=96.97  E-value=0.0043  Score=50.96  Aligned_cols=76  Identities=12%  Similarity=0.152  Sum_probs=51.7

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~  256 (277)
                      ....+.|+..|.++.++..+..               .+.++....+|.|+|-||...+.+.    .+...+.+.++.++
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~~----~~~~~i~~~~~~~~   73 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRDS----GISLDVISSYAPYI   73 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHHC----cchHHHHHHhcCCC
Confidence            4577888888988877765421               2223322468999999986544322    23334445677899


Q ss_pred             cEEEEchhhHHhhhhC
Q 023800          257 PYGAICASPALVLEPH  272 (277)
Q Consensus       257 ~i~aiC~G~~~lLa~a  272 (277)
                      ++.+||-|.. +||.+
T Consensus        74 PiLGIClG~Q-lla~~   88 (190)
T CHL00101         74 PILGVCLGHQ-SIGYL   88 (190)
T ss_pred             cEEEEchhHH-HHHHH
Confidence            9999999999 89874

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.0065  Score=50.23  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             HHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--CHHHHHHHHHHHH
Q 023800          177 VIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQKE  253 (277)
Q Consensus       177 ~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--~~~~~~~l~~~~~  253 (277)
                      -.+...++..|+ ...++..+..                ...++...+|.+||.||..+ .....  .+...+||++...
T Consensus        15 ~li~r~~re~g~v~~e~~~~~~~----------------~~~~~~~~~~giIlsGgp~s-v~~~~~w~~~~~~~i~~~~~   77 (198)
T COG0518          15 GLIARRLRELGYVYSEIVPYTGD----------------AEELPLDSPDGIIISGGPMS-VYDEDPWLPREKDLIKDAGV   77 (198)
T ss_pred             HHHHHHHHHcCCceEEEEeCCCC----------------cccccccCCCEEEEcCCCCC-CccccccchhHHHHHHHhCC
Confidence            345577788884 3444444332                22333345699999999632 22233  5788999999999


Q ss_pred             cCCcEEEEchhhHHhhhh
Q 023800          254 SNRPYGAICASPALVLEP  271 (277)
Q Consensus       254 ~~~~i~aiC~G~~~lLa~  271 (277)
                      .+++|.+||.|.. +||+
T Consensus        78 p~~pvLGIC~G~Q-l~A~   94 (198)
T COG0518          78 PGKPVLGICLGHQ-LLAK   94 (198)
T ss_pred             CCCCEEEEChhHH-HHHH
Confidence            9999999999999 8987

>PRK05637 anthranilate synthase component II; Provisional

Probab=96.95  E-value=0.0059  Score=50.95  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=50.5

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~  257 (277)
                      ...+.|++.|+++.++..+-                .++++....+|.||+-||..++.+   .....++++++. .+++
T Consensus        16 nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d---~~~~~~li~~~~-~~~P   75 (208)
T PRK05637         16 NLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD---AGNMMALIDRTL-GQIP   75 (208)
T ss_pred             HHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH---hhHHHHHHHHHh-CCCC
Confidence            47788999999998886542                123332246899999777544432   223345665443 5799


Q ss_pred             EEEEchhhHHhhhhC
Q 023800          258 YGAICASPALVLEPH  272 (277)
Q Consensus       258 i~aiC~G~~~lLa~a  272 (277)
                      |.+||-|.. +|+.+
T Consensus        76 iLGIClG~Q-lla~a   89 (208)
T PRK05637         76 LLGICLGFQ-ALLEH   89 (208)
T ss_pred             EEEEcHHHH-HHHHH
Confidence            999999999 89875

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=96.87  E-value=0.012  Score=49.30  Aligned_cols=95  Identities=20%  Similarity=0.208  Sum_probs=64.9

Q ss_pred             CCeEEEEecCCCchhh-HHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcc-hhhhccCCccEEEEcCCcchHH
Q 023800          160 SPQILVPIANGSEEME-AVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADML-IDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e-~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~-~~~~~~~~~D~livpGG~~~~~  236 (277)
                      .+||+++-.......+ +.....+|++. |+++..+....              +.. .+.+  ..+|+|++|||.. ..
T Consensus        31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--------------~~~~~~~l--~~ad~I~l~GG~~-~~   93 (212)
T cd03146          31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--------------TEDPLDAL--LEADVIYVGGGNT-FN   93 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--------------cccHHHHH--hcCCEEEECCchH-HH
Confidence            3678888765544434 45677888888 88877664321              122 2333  4689999999853 22


Q ss_pred             hhh--cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          237 AFA--KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       237 ~~~--~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.  ....+.+.|++.+++|++++++|.|+. ++.+.
T Consensus        94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~-i~~~~  130 (212)
T cd03146          94 LLAQWREHGLDAILKAALERGVVYIGWSAGSN-CWFPS  130 (212)
T ss_pred             HHHHHHHcCHHHHHHHHHHCCCEEEEECHhHH-hhCCC
Confidence            111  123578888988999999999999999 88874

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK05380 pyrG CTP synthetase; Validated

Probab=96.87  E-value=0.016  Score=54.49  Aligned_cols=149  Identities=19%  Similarity=0.230  Sum_probs=84.9

Q ss_pred             CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc---CCCCeEEEEecCCCchh-
Q 023800           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF---DNSPQILVPIANGSEEM-  174 (277)
Q Consensus        99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kV~ill~~g~~~~-  174 (277)
                      ..++|++....+..+.=+.+-++    ...+.+.+.+.++.....   +.+-..+...+   ....+|+++= .-.... 
T Consensus       231 ~~~vi~~~d~~~iy~vPl~l~~q----~~~~~i~~~l~l~~~~~~---~~~w~~~~~~~~~~~~~v~IalVG-KY~~l~D  302 (533)
T PRK05380        231 EEAVISAPDVDSIYEVPLLLHEQ----GLDDIVLERLGLEAPEPD---LSEWEELVERLKNPKGEVTIALVG-KYVELPD  302 (533)
T ss_pred             HHHEEEcCCCccHHhhhHHHHHC----CCHHHHHHHcCCCCCCCC---HHHHHHHHHHHhCCCCceEEEEEe-CccCCcH
Confidence            44677777776655554444443    355667777766531111   11111111111   2234566653 212222 


Q ss_pred             hHHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHH
Q 023800          175 EAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK  250 (277)
Q Consensus       175 e~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~  250 (277)
                      .+....++|+.+++    ++.+...+.. .+...        ...+.  ...+|.|++|||++. .   ..+....+++.
T Consensus       303 aY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~--L~~~DGIIlpGGfG~-~---~~~g~i~~i~~  367 (533)
T PRK05380        303 AYKSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAEL--LKGVDGILVPGGFGE-R---GIEGKILAIRY  367 (533)
T ss_pred             HHHHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhH--hhcCCEEEecCCCCc-c---ccccHHHHHHH
Confidence            35677888888754    4555555443 22211        11122  246899999999742 2   23456788999


Q ss_pred             HHHcCCcEEEEchhhHHhhhh
Q 023800          251 QKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       251 ~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      +.++++|+.+||.|.. +++-
T Consensus       368 a~e~~iPiLGIClGmQ-ll~v  387 (533)
T PRK05380        368 ARENNIPFLGICLGMQ-LAVI  387 (533)
T ss_pred             HHHCCCcEEEEchHHH-HHHH
Confidence            9999999999999998 6653

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.85  E-value=0.0068  Score=54.66  Aligned_cols=90  Identities=20%  Similarity=0.262  Sum_probs=65.2

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhC---CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a---~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      |+|+|.--+|.....+...++.|++.   .|.|..++.+.           +..+ .|.    ..+|++++|||...+..
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw~----~~~~LlV~PGG~d~~y~   64 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PWQ----SKCALLVMPGGADLPYC   64 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-ccc----cCCcEEEECCCcchHHH
Confidence            57888888999999999999999863   46776664431           1111 122    35799999999632221


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~  266 (277)
                      ..-+..-.+.||++.++|..-.+||.|++
T Consensus        65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY   93 (367)
T PF09825_consen   65 RSLNGEGNRRIRQFVENGGGYLGICAGAY   93 (367)
T ss_pred             HhhChHHHHHHHHHHHcCCcEEEECcchh
Confidence            12245668899999999999999999999

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK00758 GMP synthase subunit A; Validated

Probab=96.84  E-value=0.0059  Score=49.82  Aligned_cols=68  Identities=21%  Similarity=0.351  Sum_probs=46.8

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCc-cEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800          179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY-DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (277)
Q Consensus       179 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~-D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~  257 (277)
                      ..+.|++.|.++.++..+..                .+++  ..+ |.|+++||. ...   ....+.+|++   +.+++
T Consensus        15 i~~~l~~~g~~~~~~~~~~~----------------~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P   69 (184)
T PRK00758         15 IHRTLRYLGVDAKIIPNTTP----------------VEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP   69 (184)
T ss_pred             HHHHHHHcCCcEEEEECCCC----------------HHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence            46778888988877654321                2233  245 999999985 222   2234556766   45899


Q ss_pred             EEEEchhhHHhhhhC
Q 023800          258 YGAICASPALVLEPH  272 (277)
Q Consensus       258 i~aiC~G~~~lLa~a  272 (277)
                      |.+||.|.. +|+++
T Consensus        70 ilGIC~G~Q-~L~~a   83 (184)
T PRK00758         70 ILGICLGHQ-LIAKA   83 (184)
T ss_pred             EEEEeHHHH-HHHHh
Confidence            999999999 89875

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=96.83  E-value=0.01  Score=53.91  Aligned_cols=88  Identities=20%  Similarity=0.227  Sum_probs=61.3

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      .+||+++=+ |+.    ......|++.|+++.++..+.                +.+++...++|.|++.||...+.   
T Consensus       192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~---  247 (382)
T CHL00197        192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPS---  247 (382)
T ss_pred             CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChh---
Confidence            357777654 443    237888899999998884332                12333334689999999865443   


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ......+.++++.+.+.+|.+||-|-. +|+.+
T Consensus       248 ~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a  279 (382)
T CHL00197        248 AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA  279 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence            234566777877777899999999999 88864

>PRK13566 anthranilate synthase; Provisional

Probab=96.81  E-value=0.0092  Score=58.69  Aligned_cols=90  Identities=16%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      ..++|+++=+.   +.-.....+.|++.|+++.++..+..             ...++   ..++|.||+.||...+.  
T Consensus       525 ~g~~IlvID~~---dsf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~---~~~~DgVVLsgGpgsp~--  583 (720)
T PRK13566        525 EGKRVLLVDHE---DSFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLD---RVNPDLVVLSPGPGRPS--  583 (720)
T ss_pred             CCCEEEEEECC---CchHHHHHHHHHHCCCEEEEEECCCC-------------hhHhh---hcCCCEEEECCCCCChh--
Confidence            45788776544   23356788899999999999877532             11112   13589999876654333  


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                        +..+..+++...++++||.+||-|.. +|+++
T Consensus       584 --d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a  614 (720)
T PRK13566        584 --DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA  614 (720)
T ss_pred             --hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence              23467899999999999999999999 88874

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=96.77  E-value=0.01  Score=53.52  Aligned_cols=86  Identities=22%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      ++|+++=+ |+.    ...+..|++.|.++.++..+.                +++++....+|.|+++||...+.   .
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~  229 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A  229 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence            46666543 433    357788899999998874331                12333223469999999864443   3


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+...++++++.+ ++||.+||-|.. +|+.+
T Consensus       230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a  259 (358)
T TIGR01368       230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLALA  259 (358)
T ss_pred             HHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence            4567788888887 899999999999 88764

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=96.75  E-value=0.0046  Score=57.21  Aligned_cols=88  Identities=26%  Similarity=0.304  Sum_probs=59.1

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--Hhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--~~~  238 (277)
                      .||+|.- |..--.=+-.-++.|+.+ .++..+|+-..                 +++  +++|+|++|||....  ..+
T Consensus       234 ~~iavA~-D~AF~FyY~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L  292 (433)
T PRK13896        234 PTVAVAR-DAAFCFRYPATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL  292 (433)
T ss_pred             CeEEEEE-cCccceeCHHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence            4777764 422222223345777777 88888887432                 112  257999999997421  223


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ..+... +.|+++.++|++|.++|.|-. +|.+
T Consensus       293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q-~L~~  323 (433)
T PRK13896        293 ADSPAL-DELADRAADGLPVLGECGGLM-ALAE  323 (433)
T ss_pred             HhCCcH-HHHHHHHHCCCcEEEEehHHH-Hhhc
Confidence            334344 889999999999999999999 7876

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=96.70  E-value=0.011  Score=58.05  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      ..++|+|+=+.   +.-.....+.|++.|+++.++.....             +..++   ...+|.|||.||...+.  
T Consensus       515 ~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~---~~~~DgLILsgGPGsp~--  573 (717)
T TIGR01815       515 EGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD---ERRPDLVVLSPGPGRPA--  573 (717)
T ss_pred             CCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh---hcCCCEEEEcCCCCCch--
Confidence            45788887533   33356788999999999988865421             01111   13589999966643332  


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                        +....++|++..+.+++|.+||-|.. +|+++
T Consensus       574 --d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a  604 (717)
T TIGR01815       574 --DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA  604 (717)
T ss_pred             --hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence              23457789998999999999999999 89875

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.68  E-value=0.0075  Score=54.34  Aligned_cols=86  Identities=22%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      ++|.++=+ |+    -....+.|++.|+++.++-.+..                .+++....+|.|+++||...+.   .
T Consensus       168 ~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIiLsgGPgdp~---~  223 (354)
T PRK12838        168 KHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDTS----------------LEEIKNLNPDGIVLSNGPGDPK---E  223 (354)
T ss_pred             CEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEEcCCCCChH---H
Confidence            56666533 32    25577888889999988854321                2232223689999999864433   2


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .....++++++.++ +||.+||-|.. +|+.+
T Consensus       224 ~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a  253 (354)
T PRK12838        224 LQPYLPEIKKLISS-YPILGICLGHQ-LIALA  253 (354)
T ss_pred             hHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence            34567788888877 99999999999 88864

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.68  E-value=0.0074  Score=50.05  Aligned_cols=73  Identities=18%  Similarity=0.234  Sum_probs=46.7

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--CHHHHHHHHHH-HHc
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQ-KES  254 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--~~~~~~~l~~~-~~~  254 (277)
                      ...+.|++.|+++.++...                   +++  ..+|.||+||+....+....  ...+...|+++ .++
T Consensus        14 ~v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~   72 (201)
T PRK13152         14 SVAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQ   72 (201)
T ss_pred             HHHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhC
Confidence            4456777777777665321                   122  35899999997432221111  11344556554 588


Q ss_pred             CCcEEEEchhhHHhhhhC
Q 023800          255 NRPYGAICASPALVLEPH  272 (277)
Q Consensus       255 ~~~i~aiC~G~~~lLa~a  272 (277)
                      +++|.+||.|.. +|+.+
T Consensus        73 ~~pvlGiC~G~Q-~l~~~   89 (201)
T PRK13152         73 KKPILGICLGMQ-LFLER   89 (201)
T ss_pred             CCcEEEECHhHH-HHhhc
Confidence            999999999999 89986

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.61  E-value=0.0057  Score=51.11  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=55.9

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc---hHHhhh
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---GAQAFA  239 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---~~~~~~  239 (277)
                      |+|+=|-.-+   +......+++.++++.+++..                   +++  .++|.||+||+..   ....+.
T Consensus         2 i~iidyg~gN---l~s~~~al~~~~~~~~~~~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~~l~   57 (210)
T PRK14004          2 IAILDYGMGN---IHSCLKAVSLYTKDFVFTSDP-------------------ETI--ENSKALILPGDGHFDKAMENLN   57 (210)
T ss_pred             EEEEECCCch---HHHHHHHHHHcCCeEEEECCH-------------------HHh--ccCCEEEECCCCchHHHHHHHH
Confidence            4555444333   344556666677766655321                   222  3589999999742   122232


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                       ...+..+|+++.++++++.+||.|.. +|+++
T Consensus        58 -~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~   88 (210)
T PRK14004         58 -STGLRSTIDKHVESGKPLFGICIGFQ-ILFES   88 (210)
T ss_pred             -HcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence             23688899999999999999999999 89885

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.57  E-value=0.012  Score=48.31  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh--c
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--K  240 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~--~  240 (277)
                      |+|+=|..-+..++   ..+|++.|.++.++...                   +++  .++|.||+||+......+.  .
T Consensus         2 i~iidyg~gN~~s~---~~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~   57 (192)
T PRK13142          2 IVIVDYGLGNISNV---KRAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK   57 (192)
T ss_pred             EEEEEcCCccHHHH---HHHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence            67777776666554   55666678877766321                   222  3589999999732122111  1


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      ...+.+.|++  +.++++.+||.|-. +|++..
T Consensus        58 ~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~~   87 (192)
T PRK13142         58 RLNLNAILAK--NTDKKMIGICLGMQ-LMYEHS   87 (192)
T ss_pred             HCCcHHHHHH--hCCCeEEEECHHHH-HHhhhc
Confidence            2246777777  57899999999999 898753

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.51  E-value=0.0063  Score=56.86  Aligned_cols=70  Identities=26%  Similarity=0.404  Sum_probs=48.7

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ++.|++.|.++..+++-.+.              .+.+++..   ||.+.  ...+..+..+.+.|+++.++|++|.|||
T Consensus       264 ~~~L~~~g~~~~~~~~~~~~--------------~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiC  329 (451)
T PRK01077        264 LELLRAAGAELVFFSPLADE--------------ALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAEC  329 (451)
T ss_pred             HHHHHHCCCEEEEeCCcCCC--------------CCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEc
Confidence            46677777888777763211              12222211   67533  3446677889999999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      .|.+ +|++.
T Consensus       330 gG~~-~L~~~  338 (451)
T PRK01077        330 GGLM-YLGES  338 (451)
T ss_pred             HHHH-HHHhh
Confidence            9998 78765

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.48  E-value=0.0063  Score=49.97  Aligned_cols=68  Identities=15%  Similarity=0.092  Sum_probs=45.1

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      ++.|++.|+++..++...                .+++++..   ||... .+.+..+..+.++++++.++|++|.+||.
T Consensus        17 ~~~l~~~g~~~~~~~~~~----------------~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~   80 (189)
T PRK13525         17 LAALEALGAEAVEVRRPE----------------DLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCA   80 (189)
T ss_pred             HHHHHHCCCEEEEeCChh----------------HhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECH
Confidence            456777788777776321                12222221   65311 12234456678999999999999999999


Q ss_pred             hHHHHHHHc
Q 023800           83 FLAVALGSW   91 (277)
Q Consensus        83 g~~~~La~a   91 (277)
                      |.. +|+.+
T Consensus        81 G~Q-lL~~~   88 (189)
T PRK13525         81 GMI-LLAKE   88 (189)
T ss_pred             HHH-HHHhh
Confidence            999 88874

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.42  E-value=0.0051  Score=51.00  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=48.5

Q ss_pred             hhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            4 VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         4 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      ....+.|++.|+++.+++..                ..+++.+..   ||......+...+.+.++++++.++++++.+|
T Consensus        14 ~~~~~~l~~~G~~~~~~~~~----------------~~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgI   77 (200)
T PRK13143         14 RSVSKALERAGAEVVITSDP----------------EEILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGI   77 (200)
T ss_pred             HHHHHHHHHCCCeEEEECCH----------------HHHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            34567888899998887521                111222221   42111222445567889999999999999999


Q ss_pred             chhHHHHHHHcC
Q 023800           81 CVFLAVALGSWG   92 (277)
Q Consensus        81 C~g~~~~La~aG   92 (277)
                      |.|.. +|+++.
T Consensus        78 C~G~q-~l~~~~   88 (200)
T PRK13143         78 CLGMQ-LLFESS   88 (200)
T ss_pred             CHHHH-HHhhhh
Confidence            99999 999864

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.39  E-value=0.0091  Score=55.88  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .++|.||+|||.. ...-.-...+.++|+++   |++|.+||.|-. +|++.
T Consensus        35 ~~~D~lILPGG~~-~~~~~l~~~l~~~i~~~---g~pvlGICgG~Q-mLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSL-VESGSLTDELKKEILNF---DGYIIGICSGFQ-ILSEK   81 (476)
T ss_pred             ccCCEEEECCCch-hhcchHHHHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence            4689999999841 11100124566666655   899999999999 89876

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=96.37  E-value=0.0095  Score=49.12  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCccchhcccc--ChHHHHHHHHHHhCCCEEEEEchh
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKE--SEVLESIVKKQASDGRLYAAICVF   83 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~--~~~~~~~l~~~~~~g~~i~aiC~g   83 (277)
                      ....+++.|+++.++++..+  +....++-+.           ||......+..  +..+.+.|+++.++|++|.+||.|
T Consensus        15 l~~~~~~~G~~~~~~~~~~~--~~~~d~lilp-----------Gg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G   81 (194)
T cd01750          15 LDPLAREPGVDVRYVEVPEG--LGDADLIILP-----------GSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGG   81 (194)
T ss_pred             HHHHHhcCCceEEEEeCCCC--CCCCCEEEEC-----------CCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHH
Confidence            34556677899999987652  1111111111           44311222222  456889999999999999999999


Q ss_pred             HHHHHHHcCC
Q 023800           84 LAVALGSWGL   93 (277)
Q Consensus        84 ~~~~La~aGl   93 (277)
                      .. +|++.-.
T Consensus        82 ~q-lL~~~~~   90 (194)
T cd01750          82 YQ-MLGKYIV   90 (194)
T ss_pred             HH-Hhhhhcc
Confidence            99 8987653

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>TIGR00337 PyrG CTP synthase

Probab=96.37  E-value=0.068  Score=50.39  Aligned_cols=147  Identities=18%  Similarity=0.263  Sum_probs=81.5

Q ss_pred             CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc---CCCCeEEEEe-cCCCchh
Q 023800           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF---DNSPQILVPI-ANGSEEM  174 (277)
Q Consensus        99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kV~ill-~~g~~~~  174 (277)
                      ..++|.+....+..+.=+.+-++    ...+.+.+.+.++....+   +.+-..+...+   .+..+|+++- |.. ..-
T Consensus       232 ~~~vi~~~d~~~iY~vPl~l~~q----~~~~~i~~~l~l~~~~~~---~~~W~~~~~~~~~~~~~v~IalVGKY~~-~~d  303 (525)
T TIGR00337       232 EEAVINAHDVSSIYEVPLLLLKQ----GLDDYLCRRLNLNCDEAD---LSEWEELVEKFINPKHEVTIGIVGKYVE-LKD  303 (525)
T ss_pred             HHHEEEcCCCccHhhhhHHHHHC----ChHHHHHHHhCCCCCCCc---HHHHHHHHHHhhCCCCCcEEEEEeCCcC-CHH
Confidence            44688887777644444443333    356667777766531111   11111111111   2346777765 222 222


Q ss_pred             hHHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHH
Q 023800          175 EAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK  250 (277)
Q Consensus       175 e~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~  250 (277)
                      .+....+.|..++.    .+.+...+.. .+..        . ..+.  ..++|.|++|||.+..    ..+.....++.
T Consensus       304 aY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~--------~-~~~~--L~~~dGIiLpGG~G~~----~~~g~i~ai~~  367 (525)
T TIGR00337       304 SYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEE--------E-GAEF--LKGVDGILVPGGFGER----GVEGKILAIKY  367 (525)
T ss_pred             HHHHHHHHHHhCccccCCEEEEEEecHH-Hhhh--------h-hhhh--hcCCCEEEeCCCCCCh----hhcChHHHHHH
Confidence            35788899999886    3333322221 1100        0 0011  2468999999997422    23445567787


Q ss_pred             HHHcCCcEEEEchhhHHhhh
Q 023800          251 QKESNRPYGAICASPALVLE  270 (277)
Q Consensus       251 ~~~~~~~i~aiC~G~~~lLa  270 (277)
                      +.+++.|+.+||-|-. +++
T Consensus       368 a~e~~iP~LGIClG~Q-ll~  386 (525)
T TIGR00337       368 ARENNIPFLGICLGMQ-LAV  386 (525)
T ss_pred             HHHcCCCEEEEcHHHH-HHH
Confidence            8889999999999998 664

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.34  E-value=0.01  Score=49.09  Aligned_cols=71  Identities=20%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ..+.|++.|+++++......              ..+.+.+..   ||... ...+..+..+.++|+++.++++++.+||
T Consensus        19 ~~~~l~~~g~~~~~~~~~~~--------------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC   84 (200)
T PRK13527         19 LKRALDELGIDGEVVEVRRP--------------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTC   84 (200)
T ss_pred             HHHHHHhcCCCeEEEEeCCh--------------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEEC
Confidence            34566777887777766421              112222221   65321 1123344568999999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      .|.. +|+.+
T Consensus        85 ~G~Q-ll~~~   93 (200)
T PRK13527         85 AGLI-LLAKE   93 (200)
T ss_pred             HHHH-HHHhh
Confidence            9999 89987

>PLN02327 CTP synthase

Probab=96.17  E-value=0.099  Score=49.52  Aligned_cols=156  Identities=14%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccc-cCCCchhhcccCccccc---cCCCCeEEEEecCCCchh
Q 023800           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRA-NHGDEFTIAEFNPVQWT---FDNSPQILVPIANGSEEM  174 (277)
Q Consensus        99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~kV~ill~~g~~~~  174 (277)
                      -.++|.+....+..+.=+.+-++    ...+.+.+.+.++. ....+  +.+-..+...   .....+|+++- .-....
T Consensus       238 ~~~Vi~~~d~~~iY~vPl~l~~q----~l~~~i~~~l~l~~~~~~~~--~~~W~~~~~~~~~~~~~v~IalVG-KY~~l~  310 (557)
T PLN02327        238 AENILNLHDVSNIWHVPLLLRDQ----KAHEAILKVLNLLSVAREPD--LEEWTARAESCDNLTEPVRIAMVG-KYTGLS  310 (557)
T ss_pred             HHHEEEcCCCchHhhhhHHHHHC----CcHHHHHHHcCCCCCCCCCC--hHHHHHHHHHHhCCCCceEEEEEe-cccCCc
Confidence            44688887776544444443333    45666777776652 11111  1222211111   22345666664 222222


Q ss_pred             -hHHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEe---CcchhhhccCCccEEEEcCCcchHHhhhcCHHHHH
Q 023800          175 -EAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVA---DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN  246 (277)
Q Consensus       175 -e~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~---~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~  246 (277)
                       .+....++|+.|+    .++.+...+.. .+... +..-.|   +..++.  ..++|.|++|||.+.    +.....+.
T Consensus       311 DAY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~~-~~~~~~~~y~~~~~~--L~~~DGIvvpGGfG~----~~~~G~i~  382 (557)
T PLN02327        311 DSYLSVLKALLHASVACSRKLVIDWVAAS-DLEDE-TAKETPDAYAAAWKL--LKGADGILVPGGFGD----RGVEGKIL  382 (557)
T ss_pred             HhHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCCc-ccccccchhhhhHHh--hccCCEEEeCCCCCC----cccccHHH
Confidence             2667888888775    45555544433 22111 100000   112232  357999999999642    12334466


Q ss_pred             HHHHHHHcCCcEEEEchhhHHhhh
Q 023800          247 MLKKQKESNRPYGAICASPALVLE  270 (277)
Q Consensus       247 ~l~~~~~~~~~i~aiC~G~~~lLa  270 (277)
                      .++.+.++++|+.+||-|-. +++
T Consensus       383 ai~~are~~iP~LGIClGmQ-l~v  405 (557)
T PLN02327        383 AAKYARENKVPYLGICLGMQ-IAV  405 (557)
T ss_pred             HHHHHHHcCCCEEEEcHHHH-HHH
Confidence            77878889999999999998 564

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=96.12  E-value=0.0086  Score=51.61  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             HHHHHHhCCCeEEEEeeCC---C-ceeecCCCCEEecCccccccccCCCccchhccccChHHHHHHHHHHhC-CCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEK---Q-LRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASD-GRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~---~-~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~-g~~i~ai   80 (277)
                      .+..|+.+|+++..+..+.   + ..+....++.+.=-.+..|... +|..-+..+..++.+.+-|++|.++ |+++.+|
T Consensus        18 ~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~-sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGI   96 (259)
T PF13507_consen   18 TAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLR-SGAIAAARLLFNSPLMDAIREFLERPGGFVLGI   96 (259)
T ss_dssp             HHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTS-TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEE
T ss_pred             HHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccch-HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEE
Confidence            4677889999999987653   0 1111112222221111111111 2311122345567889999999999 9999999


Q ss_pred             chhHHHHHHHcCCCCC
Q 023800           81 CVFLAVALGSWGLLKG   96 (277)
Q Consensus        81 C~g~~~~La~aGll~g   96 (277)
                      |.|-. +|.++|||.+
T Consensus        97 cNGfQ-iL~~~Gllp~  111 (259)
T PF13507_consen   97 CNGFQ-ILVELGLLPG  111 (259)
T ss_dssp             CHHHH-HHCCCCCSTT
T ss_pred             chHhH-HHHHhCcCCC
Confidence            99999 9999999987

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=96.12  E-value=0.039  Score=47.51  Aligned_cols=51  Identities=24%  Similarity=0.234  Sum_probs=37.2

Q ss_pred             CCccEEEEcCCcchHHh-------------hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          221 LSYDLIVLPGGLGGAQA-------------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~-------------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +.+|.|+++||..+.+.             ...+....++++.+.+++++|.+||-|.. +|+.+
T Consensus        60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva  123 (254)
T PRK11366         60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA  123 (254)
T ss_pred             HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            35899999998422210             01123457899999999999999999999 78764

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=96.08  E-value=0.048  Score=46.25  Aligned_cols=95  Identities=13%  Similarity=0.082  Sum_probs=62.2

Q ss_pred             CCeEEEEecCC--Cchhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-H
Q 023800          160 SPQILVPIANG--SEEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-A  235 (277)
Q Consensus       160 ~~kV~ill~~g--~~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~  235 (277)
                      .+||+++-.-.  -+..+ +....++|+..|++++.+-...               ...+.+  ...|+|+|+||... .
T Consensus        31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l--~~ad~I~v~GGnt~~l   93 (233)
T PRK05282         31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAI--ENAEAIFVGGGNTFQL   93 (233)
T ss_pred             CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHH--hcCCEEEECCccHHHH
Confidence            36788876543  12223 3457788888899876663211               111222  46799999999631 1


Q ss_pred             HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ........+.+.|+++.++|+++++.|.|+. +++..
T Consensus        94 ~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAi-i~~~~  129 (233)
T PRK05282         94 LKQLYERGLLAPIREAVKNGTPYIGWSAGAN-VAGPT  129 (233)
T ss_pred             HHHHHHCCcHHHHHHHHHCCCEEEEECHHHH-hhhcc
Confidence            1122344678889999999999999999999 77764

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.01  E-value=0.035  Score=46.29  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCC
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG   96 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g   96 (277)
                      ..+.+-++++.++|+++.+||.|-. +|.++|||.|
T Consensus        68 ~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG  102 (231)
T COG0047          68 APVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG  102 (231)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence            7788889999999999999999999 9999999997

>PRK08250 glutamine amidotransferase; Provisional

Probab=96.00  E-value=0.026  Score=48.01  Aligned_cols=74  Identities=11%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc-cccC-----hHHHHHHHHHHhCCCEE
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN-LKES-----EVLESIVKKQASDGRLY   77 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~-~~~~-----~~~~~~l~~~~~~g~~i   77 (277)
                      .+.+++.|+++.+.....+.++         ++ .+++++..   ||..+... ..+.     ....+||+++.++++++
T Consensus        18 ~~~~~~~g~~~~~~~~~~g~~~---------p~-~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~Pv   87 (235)
T PRK08250         18 LKWAENRGYDISYSRVYAGEAL---------PE-NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAV   87 (235)
T ss_pred             HHHHHHCCCeEEEEEccCCCCC---------CC-CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCE
Confidence            4566788888888664432211         10 12233322   66322211 1112     46789999999999999


Q ss_pred             EEEchhHHHHHHHc
Q 023800           78 AAICVFLAVALGSW   91 (277)
Q Consensus        78 ~aiC~g~~~~La~a   91 (277)
                      .+||.|.. +|+.+
T Consensus        88 lGIC~G~Q-lla~a  100 (235)
T PRK08250         88 IGVCLGAQ-LIGEA  100 (235)
T ss_pred             EEEChhHH-HHHHH
Confidence            99999999 89886

>PLN02347 GMP synthetase

Probab=95.93  E-value=0.043  Score=52.31  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS  241 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~  241 (277)
                      +|+|+=+-.-.   .......+++.|..+.++..+.                ..+++...++|.||++||..... ....
T Consensus        12 ~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~-~~~~   71 (536)
T PLN02347         12 VVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVH-VEGA   71 (536)
T ss_pred             EEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCccc-ccCC
Confidence            56665433222   2345677888898887775442                23333323689999999853222 1122


Q ss_pred             HHHH-HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          242 KKLV-NMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       242 ~~~~-~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +.+. .+++...+.++||.+||-|.. +|+.+
T Consensus        72 p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a  102 (536)
T PLN02347         72 PTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK  102 (536)
T ss_pred             chhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence            2222 233334457899999999999 89874

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=95.90  E-value=0.036  Score=50.77  Aligned_cols=75  Identities=20%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~  256 (277)
                      ..++..|++.|+++.++..+.                ..+++...++|.|++.||...+.   ..+...+.+++.. .++
T Consensus       252 ~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~i  311 (415)
T PLN02771        252 HNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GKV  311 (415)
T ss_pred             HHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hCC
Confidence            667788899999998885542                12333234689999999864443   3455667777766 478


Q ss_pred             cEEEEchhhHHhhhhC
Q 023800          257 PYGAICASPALVLEPH  272 (277)
Q Consensus       257 ~i~aiC~G~~~lLa~a  272 (277)
                      +|.+||-|.. +||.+
T Consensus       312 PIlGICLGhQ-lLa~A  326 (415)
T PLN02771        312 PVFGICMGHQ-LLGQA  326 (415)
T ss_pred             CEEEEcHHHH-HHHHh
Confidence            9999999999 89875

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=95.87  E-value=0.013  Score=55.20  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=40.1

Q ss_pred             CCccEEEEcCCcchHHhhh--cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          221 LSYDLIVLPGGLGGAQAFA--KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~~--~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      +++|+|++|||......+.  .+..+.+.|+++.++|++|.++|.|-. +|.+
T Consensus       283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q-~Lg~  334 (475)
T TIGR00313       283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQ-MLGK  334 (475)
T ss_pred             ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHH-Hhhh
Confidence            3689999999974333322  345678899999999999999999999 7987

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=95.82  E-value=0.05  Score=51.83  Aligned_cols=89  Identities=20%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHH
Q 023800          166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV  245 (277)
Q Consensus       166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~  245 (277)
                      ++.|.++... .-..+.|+..|+++.++..+-  +          .+..++++...++|.||+-||...+.+....    
T Consensus         5 LiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~----   67 (531)
T PRK09522          5 LLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGCM----   67 (531)
T ss_pred             EEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCCC----
Confidence            3345544444 447788899999998887542  1          1223444433457899998886555433222    


Q ss_pred             HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          246 NMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       246 ~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .++.+..+.++||.+||-|.. +|+.+
T Consensus        68 ~~i~~~~~~~iPILGIClG~Q-lLa~a   93 (531)
T PRK09522         68 PELLTRLRGKLPIIGICLGHQ-AIVEA   93 (531)
T ss_pred             HHHHHHHhcCCCEEEEcHHHH-HHHHh
Confidence            333333456899999999999 89874

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=95.74  E-value=0.28  Score=45.47  Aligned_cols=184  Identities=16%  Similarity=0.217  Sum_probs=105.6

Q ss_pred             cChHHHHHHHHHHh---CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------------------
Q 023800           59 ESEVLESIVKKQAS---DGRLYAAICVFLAVALGSWGLLKGLK-------------------------------------   98 (277)
Q Consensus        59 ~~~~~~~~l~~~~~---~g~~i~aiC~g~~~~La~aGll~g~~-------------------------------------   98 (277)
                      ++-.+++-+|++..   ....+..-|+-.- .++.+|=++.|.                                     
T Consensus       148 EslpFlEAiRQ~~~e~g~~n~~fiH~tlvp-yi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlf  226 (533)
T COG0504         148 ESLPFLEAIRQLRLELGRENVLFIHVTLVP-YIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALF  226 (533)
T ss_pred             cccHHHHHHHHHHhhhCcccEEEEEEecce-eecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHh
Confidence            34456666666652   2447777788776 788899888887                                     


Q ss_pred             ----CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCccccccCCC---CeEEEEecCCC
Q 023800           99 ----DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNS---PQILVPIANGS  171 (277)
Q Consensus        99 ----dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kV~ill~~g~  171 (277)
                          ...+|++-...+..+.=+.+    ....+.+.+.+.+.++..+.   ++.+-..+...+..+   .+|+++= --.
T Consensus       227 c~V~~~~Vi~~~Dv~siY~vPl~l----~~qgl~~~i~~~l~l~~~~~---dl~~W~~~v~~i~~~~~~v~IalVG-KYv  298 (533)
T COG0504         227 CNVPEEAVISAPDVESIYEVPLLL----EKQGLDDYILERLNLNAPEP---DLSEWKDLVDKIKNPKKEVTIALVG-KYV  298 (533)
T ss_pred             cCCCHHHeEecccHHHHHHhHHHH----HHcchHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCCCceEEEEEE-CCc
Confidence                33466665555433333333    33346666777777751111   111111111112111   3455543 223


Q ss_pred             chhh-HHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHH
Q 023800          172 EEME-AVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN  246 (277)
Q Consensus       172 ~~~e-~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~  246 (277)
                      +..| +....++|+.+|+    ++.+...+.. .+....      ...+..    .+|.|+||||++    .+--+.-+.
T Consensus       299 ~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~~~------~~~~~~----~~dgIlVPGGFG----~RG~eGkI~  363 (533)
T COG0504         299 ELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEEEN------AAELEK----LVDGILVPGGFG----YRGVEGKIA  363 (533)
T ss_pred             CchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccccc------hhhhhh----cCCEEEeCCCCC----cCchHHHHH
Confidence            3333 6778899998874    4555444433 111110      001111    289999999985    234566777


Q ss_pred             HHHHHHHcCCcEEEEchhhH
Q 023800          247 MLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       247 ~l~~~~~~~~~i~aiC~G~~  266 (277)
                      .++.+.+++.|..+||-|-.
T Consensus       364 Ai~yAREn~iP~lGIClGmQ  383 (533)
T COG0504         364 AIRYARENNIPFLGICLGMQ  383 (533)
T ss_pred             HHHHHHhcCCCEEEEchhHH
Confidence            88888899999999999988

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=95.70  E-value=0.086  Score=42.90  Aligned_cols=87  Identities=16%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~  244 (277)
                      |++.|+++... .-..+.|+..|.++.++-.+.               .+...+...++|.|+|.-|.+.+.   +....
T Consensus         4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~---------------~~~~~~~~~~pd~iviSPGPG~P~---d~G~~   64 (191)
T COG0512           4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDD---------------ISLELIEALKPDAIVISPGPGTPK---DAGIS   64 (191)
T ss_pred             EEEEECccchH-HHHHHHHHHcCCceEEEECCc---------------cCHHHHhhcCCCEEEEcCCCCChH---HcchH
Confidence            34456655444 457788899998888876552               112233335689999966644344   34456


Q ss_pred             HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.|+++ ....+|.+||-|-. .++++
T Consensus        65 ~~~i~~~-~~~~PiLGVCLGHQ-ai~~~   90 (191)
T COG0512          65 LELIRRF-AGRIPILGVCLGHQ-AIAEA   90 (191)
T ss_pred             HHHHHHh-cCCCCEEEECccHH-HHHHH
Confidence            7788877 66789999999999 88764

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=95.65  E-value=0.018  Score=49.01  Aligned_cols=46  Identities=26%  Similarity=0.411  Sum_probs=36.9

Q ss_pred             CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .++|.|+++||.. .   ...+....+++...+.++++.+||.|.. +|+.
T Consensus        54 ~~~dgivl~GG~~-~---~~~~~~~~~i~~~~~~~~PvlGIClG~Q-~l~~   99 (235)
T cd01746          54 KGADGILVPGGFG-I---RGVEGKILAIKYARENNIPFLGICLGMQ-LAVI   99 (235)
T ss_pred             ccCCEEEECCCCC-C---cchhhHHHHHHHHHHCCceEEEEEhHHH-HHHH
Confidence            4689999999863 2   2344667889999999999999999999 6753

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.55  E-value=0.016  Score=48.12  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=46.2

Q ss_pred             hhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhcc--ccChHHHHHHHHHHhCCCEEE
Q 023800            4 VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNL--KESEVLESIVKKQASDGRLYA   78 (277)
Q Consensus         4 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~--~~~~~~~~~l~~~~~~g~~i~   78 (277)
                      ....+.|++.|.++.++....                .+++.+..   ||.......  ...+.+.++|+++.++++++.
T Consensus        13 ~~i~~~l~~~G~~v~~~~~~~----------------~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvl   76 (205)
T PRK13141         13 RSVEKALERLGAEAVITSDPE----------------EILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLL   76 (205)
T ss_pred             HHHHHHHHHCCCeEEEECCHH----------------HhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEE
Confidence            456788888899888864221                11222111   431111111  122357899999999999999


Q ss_pred             EEchhHHHHHHHc
Q 023800           79 AICVFLAVALGSW   91 (277)
Q Consensus        79 aiC~g~~~~La~a   91 (277)
                      +||.|.+ +|++.
T Consensus        77 GIC~G~Q-ll~~~   88 (205)
T PRK13141         77 GICLGMQ-LLFES   88 (205)
T ss_pred             EECHHHH-Hhhhc
Confidence            9999999 99986

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=95.43  E-value=0.05  Score=47.37  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=47.0

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH---HHHHHHHHHHHc
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK---KLVNMLKKQKES  254 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~---~~~~~l~~~~~~  254 (277)
                      ..++.+..+|.+|..+-.+..             ...+.+. .+.+|.|++|||....+.....+   .+.++..+..++
T Consensus        24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~   89 (273)
T cd01747          24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA   89 (273)
T ss_pred             HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence            456777888888766644311             1223331 24689999999853222111222   333444444444


Q ss_pred             C--CcEEEEchhhHHhhhh
Q 023800          255 N--RPYGAICASPALVLEP  271 (277)
Q Consensus       255 ~--~~i~aiC~G~~~lLa~  271 (277)
                      |  .||.++|-|.. +|+.
T Consensus        90 g~~~Pv~GiClG~Q-lL~~  107 (273)
T cd01747          90 GDYFPVWGTCLGFE-LLTY  107 (273)
T ss_pred             CCCCcEEEEcHHHH-HHHH
Confidence            4  79999999999 7876

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=95.42  E-value=0.03  Score=45.65  Aligned_cols=70  Identities=17%  Similarity=0.152  Sum_probs=47.8

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      .+.|++.|+++..++...  .              +++++-.   ||... ......+..+.++|+++.++|+++.+||.
T Consensus        14 ~~~l~~~g~~v~~v~~~~--~--------------l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~   77 (183)
T cd01749          14 IRALERLGVEVIEVRTPE--D--------------LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCA   77 (183)
T ss_pred             HHHHHHCCCeEEEECCHH--H--------------hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECH
Confidence            477888899988888742  1              2222221   55211 12223445678999999999999999999


Q ss_pred             hHHHHHHHcCC
Q 023800           83 FLAVALGSWGL   93 (277)
Q Consensus        83 g~~~~La~aGl   93 (277)
                      |.. +|+++--
T Consensus        78 G~q-lL~~~~~   87 (183)
T cd01749          78 GLI-LLAKEVE   87 (183)
T ss_pred             HHH-HHHHHhc
Confidence            999 8987643

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=95.28  E-value=0.16  Score=41.66  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=59.9

Q ss_pred             CCCeEEEEecCCCch---hhHHHHHHHHH----hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800          159 NSPQILVPIANGSEE---MEAVIIIDILR----RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (277)
Q Consensus       159 ~~~kV~ill~~g~~~---~e~~~~~~~l~----~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG  231 (277)
                      +.+|+++++.+--+.   ..+.+..++|.    .-|-+|.+.-.-.+          --|+  .+|  .++||.++|.|.
T Consensus         3 ~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g----------efP~--~~D--l~ky~gfvIsGS   68 (245)
T KOG3179|consen    3 EQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG----------EFPQ--EED--LEKYDGFVISGS   68 (245)
T ss_pred             cceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC----------CCCC--hhh--hhhhceEEEeCC
Confidence            347899988753111   11233444443    34556665543222          0111  233  357999999997


Q ss_pred             cchHHhhhcC---HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          232 LGGAQAFAKS---KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       232 ~~~~~~~~~~---~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..  +...+.   ..+++++++.....+.|.+||-|-. ++|++
T Consensus        69 ~~--dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara  109 (245)
T KOG3179|consen   69 KH--DAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA  109 (245)
T ss_pred             cc--cccccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence            43  323332   3788899998888899999999999 88874

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=95.28  E-value=0.072  Score=50.90  Aligned_cols=87  Identities=14%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCe-EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKK  243 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~-v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~  243 (277)
                      |++.|.++.... ...+.|++.|.+ +.++-++..               .++++....+|.||+.||...+.+   ...
T Consensus         2 il~idn~dsft~-nl~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~---~~~   62 (534)
T PRK14607          2 IILIDNYDSFTY-NIYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEE---AGI   62 (534)
T ss_pred             EEEEECchhHHH-HHHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhh---CCc
Confidence            455565555443 477888888875 666544321               234443346899999998755443   223


Q ss_pred             HHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          244 LVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       244 ~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..++++. ...++||.+||-|.. +|+.+
T Consensus        63 ~~~li~~-~~~~~PvLGIClG~Q-lLa~a   89 (534)
T PRK14607         63 SVEVIRH-FSGKVPILGVCLGHQ-AIGYA   89 (534)
T ss_pred             cHHHHHH-hhcCCCEEEEcHHHH-HHHHH
Confidence            4566765 467899999999999 88874

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=95.02  E-value=0.1  Score=46.37  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=57.2

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~  257 (277)
                      .++..|...|.++.+|-.+-                +.+++-..++|.|++.-|.+++.   .-+..++.+++.....+|
T Consensus       192 nIlr~L~~rg~~vtVVP~~t----------------~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iP  252 (368)
T COG0505         192 NILRELVKRGCRVTVVPADT----------------SAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIP  252 (368)
T ss_pred             HHHHHHHHCCCeEEEEcCCC----------------CHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCC
Confidence            45667777888888875432                34554335789999998865453   456888999999999999


Q ss_pred             EEEEchhhHHhhhhC
Q 023800          258 YGAICASPALVLEPH  272 (277)
Q Consensus       258 i~aiC~G~~~lLa~a  272 (277)
                      |.+||-|-. +||-|
T Consensus       253 ifGICLGHQ-llalA  266 (368)
T COG0505         253 IFGICLGHQ-LLALA  266 (368)
T ss_pred             eEEEcHHHH-HHHHh
Confidence            999999999 88864

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=94.78  E-value=0.049  Score=44.95  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=46.4

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc---cccChHHHHHHHHHHhCCCEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYA   78 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~   78 (277)
                      ...+.|++.|+++.+++...  .              +++.+..   || .....   ....+.+.++++++.+++++|.
T Consensus        13 ~~~~~l~~~g~~v~v~~~~~--~--------------l~~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pil   75 (198)
T cd01748          13 SVANALERLGAEVIITSDPE--E--------------ILSADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFL   75 (198)
T ss_pred             HHHHHHHHCCCeEEEEcChH--H--------------hccCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEE
Confidence            45678889999999887432  1              2222211   33 11111   1123457899999999999999


Q ss_pred             EEchhHHHHHHHc
Q 023800           79 AICVFLAVALGSW   91 (277)
Q Consensus        79 aiC~g~~~~La~a   91 (277)
                      +||.|.. +|+.+
T Consensus        76 GiC~G~q-~l~~~   87 (198)
T cd01748          76 GICLGMQ-LLFES   87 (198)
T ss_pred             EECHHHH-Hhccc
Confidence            9999999 99998

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK06186 hypothetical protein; Validated

Probab=94.68  E-value=0.05  Score=45.89  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             eEEEEecCCCchh-hHHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          162 QILVPIANGSEEM-EAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       162 kV~ill~~g~~~~-e~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      +|+++= .-.... .+....+.|+.++    .++.+...+.. .+..        +   +  ...++|.|+||||++   
T Consensus         3 ~IalVG-KY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~--------~---~--~l~~~dgilvpgGfg---   64 (229)
T PRK06186          3 RIALVG-DYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITD--------P---E--DLAGFDGIWCVPGSP---   64 (229)
T ss_pred             EEEEEE-CCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCC--------h---h--hHhhCCeeEeCCCCC---
Confidence            556442 222332 3566788888774    45555544433 2111        1   1  135689999999974   


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~  266 (277)
                       .+--+.-+..++.+.++++|+.+||-|..
T Consensus        65 -~rg~~Gki~ai~~Are~~iP~LGIClGmQ   93 (229)
T PRK06186         65 -YRNDDGALTAIRFARENGIPFLGTCGGFQ   93 (229)
T ss_pred             -cccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence             23456778899999999999999999988

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=94.58  E-value=0.12  Score=42.23  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=28.0

Q ss_pred             ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+.+.++++++.++++++.+||.|.. +|+.+
T Consensus        67 ~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~   97 (188)
T cd01741          67 LKKLKELIRQALAAGKPVLGICLGHQ-LLARA   97 (188)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            36789999999999999999999999 88886

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK07053 glutamine amidotransferase; Provisional

Probab=94.39  E-value=0.22  Score=42.30  Aligned_cols=76  Identities=13%  Similarity=0.010  Sum_probs=47.8

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc---cccChHHHHHHHHHHhCCCEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      ..+.|++.|++++++....+. ..       .+  .+.+++..   ||..+...   .+--..+.++++++.+.++++.+
T Consensus        19 i~~~L~~~g~~~~v~~~~~~~-~~-------~~--~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlG   88 (234)
T PRK07053         19 FEQVLGARGYRVRYVDVGVDD-LE-------TL--DALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLG   88 (234)
T ss_pred             HHHHHHHCCCeEEEEecCCCc-cC-------CC--CccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEE
Confidence            456778888888888764311 10       00  11122211   65322211   12235788999999999999999


Q ss_pred             EchhHHHHHHHcC
Q 023800           80 ICVFLAVALGSWG   92 (277)
Q Consensus        80 iC~g~~~~La~aG   92 (277)
                      ||.|.. +|+++-
T Consensus        89 IC~G~Q-lla~al  100 (234)
T PRK07053         89 ICLGAQ-LIARAL  100 (234)
T ss_pred             ECccHH-HHHHHc
Confidence            999999 898873

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=94.29  E-value=0.092  Score=31.06  Aligned_cols=18  Identities=17%  Similarity=-0.082  Sum_probs=15.2

Q ss_pred             CCchhhHHHHHHHHHhCC
Q 023800          170 GSEEMEAVIIIDILRRAK  187 (277)
Q Consensus       170 g~~~~e~~~~~~~l~~a~  187 (277)
                      |++..|++.|+++|..+|
T Consensus        21 G~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen   21 GFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             -B-HHHHHHHHHHHHHTT
T ss_pred             eeccHHHhhHHHHHHHCc
Confidence            899999999999999986

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=94.25  E-value=0.17  Score=41.96  Aligned_cols=50  Identities=34%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             CCccEEEEcCCcchHHhhhc-C-HHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          221 LSYDLIVLPGGLGGAQAFAK-S-KKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~~~-~-~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      +.+|++++-||....+.+.. + ..-..-|++..+.++++.+||.|.. +|.+
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~  102 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQ-LLGQ  102 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence            47999999888643444322 2 3456678999999999999999999 8854

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=94.20  E-value=0.22  Score=40.29  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=45.6

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      .++.|++.|+++.++..+..  ...     +    ...+.+..   ||....   .......++++++.++++++.+||.
T Consensus        12 ~~~~l~~~G~~~~~~~~~~~--~~~-----~----~~~~~dgiil~GG~~~~---~~~~~~~~~~~~~~~~~~PvlGIC~   77 (178)
T cd01744          12 ILRELLKRGCEVTVVPYNTD--AEE-----I----LKLDPDGIFLSNGPGDP---ALLDEAIKTVRKLLGKKIPIFGICL   77 (178)
T ss_pred             HHHHHHHCCCeEEEEECCCC--HHH-----H----hhcCCCEEEECCCCCCh---hHhHHHHHHHHHHHhCCCCEEEECH
Confidence            35667778888888876531  110     0    00111111   663222   2346788999999999999999999


Q ss_pred             hHHHHHHHc
Q 023800           83 FLAVALGSW   91 (277)
Q Consensus        83 g~~~~La~a   91 (277)
                      |.. +|+.+
T Consensus        78 G~Q-~l~~~   85 (178)
T cd01744          78 GHQ-LLALA   85 (178)
T ss_pred             HHH-HHHHH
Confidence            999 78774

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK00074 guaA GMP synthase; Reviewed

Probab=94.11  E-value=0.28  Score=46.69  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      .+|+|+=+ |..-  .......+++.|....++..+..                .+++...++|.||+|||..+... ..
T Consensus         4 ~~i~vlD~-Gsq~--~~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~~   63 (511)
T PRK00074          4 DKILILDF-GSQY--TQLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-EG   63 (511)
T ss_pred             CEEEEEEC-CCCc--HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-CC
Confidence            46777655 2221  23466888889988888754421                22332224699999999642221 11


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.+   .+...+.+++|.+||-|.. +|+.+
T Consensus        64 ~p~~---~~~i~~~~~PvLGIC~G~Q-lLa~~   91 (511)
T PRK00074         64 APRA---DPEIFELGVPVLGICYGMQ-LMAHQ   91 (511)
T ss_pred             Cccc---cHHHHhCCCCEEEECHHHH-HHHHH
Confidence            2222   2445678999999999999 88873

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=94.05  E-value=0.091  Score=44.92  Aligned_cols=73  Identities=22%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCcc-chhccccChHHHHHHHHHHhCCCEEEEEchhH
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMP-GATNLKESEVLESIVKKQASDGRLYAAICVFL   84 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~-~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~   84 (277)
                      ..+.|++.|.++.+++...  .+....|+-+.           ||.. .+..+.....+.+.|+++.++|+++.+||.|.
T Consensus        16 ~~~aL~~lG~ev~~v~~~~--~L~~~DgLILP-----------GGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gm   82 (248)
T PLN02832         16 HIAALRRLGVEAVEVRKPE--QLEGVSGLIIP-----------GGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGL   82 (248)
T ss_pred             HHHHHHHCCCcEEEeCCHH--HhccCCEEEeC-----------CCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhH
Confidence            3566777777777766532  22222222222           6542 23334444468888999989999999999999


Q ss_pred             HHHHHHcC
Q 023800           85 AVALGSWG   92 (277)
Q Consensus        85 ~~~La~aG   92 (277)
                      . +|++..
T Consensus        83 q-lLa~~~   89 (248)
T PLN02832         83 I-FLAERA   89 (248)
T ss_pred             H-HHHHHh
Confidence            9 899875

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=93.71  E-value=0.78  Score=38.14  Aligned_cols=98  Identities=18%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             CeEEEEecCCCchhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh-
Q 023800          161 PQILVPIANGSEEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF-  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~-  238 (277)
                      .||+++-.......+ .....+.|++.|.++..+-.-.      .     ..+..+.+ .....|+|+++||.. ..-+ 
T Consensus        30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~------~-----~~~~~~~~-~l~~ad~I~~~GG~~-~~~~~   96 (210)
T cd03129          30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID------T-----ANDPDVVA-RLLEADGIFVGGGNQ-LRLLS   96 (210)
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC------C-----CCCHHHHH-HHhhCCEEEEcCCcH-HHHHH
Confidence            578888665544333 3456678888887665553211      0     11122222 124689999999963 2211 


Q ss_pred             -hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 -~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                       .....+.+.|++.+++|.++++.|.|+. ++.+.
T Consensus        97 ~l~~t~~~~~i~~~~~~G~v~~G~SAGA~-~~~~~  130 (210)
T cd03129          97 VLRETPLLDAILKRVARGVVIGGTSAGAA-VMGET  130 (210)
T ss_pred             HHHhCChHHHHHHHHHcCCeEEEcCHHHH-Hhhhc
Confidence             1222466667777779999999999999 88874

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.68  E-value=0.12  Score=40.89  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--hhcCHHHHHHHHHHHHcC
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAKSKKLVNMLKKQKESN  255 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--~~~~~~~~~~l~~~~~~~  255 (277)
                      ...++|++.|++++.+..... .          .+...+.+  ...|+|++.||.. ..-  ......+.+.|++.+++|
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~~-~~l~~~l~~t~l~~~i~~~~~~G   69 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGDT-FRLLRQLKETGLDEAIREAYRKG   69 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S-H-HHHHHHHHHTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCCH-HHHHHHHHhCCHHHHHHHHHHCC
Confidence            456889999998877765542 0          00112222  3589999999963 221  123456899999999999


Q ss_pred             CcEEEEchhhHHhhhhCC
Q 023800          256 RPYGAICASPALVLEPHG  273 (277)
Q Consensus       256 ~~i~aiC~G~~~lLa~aG  273 (277)
                      +++++...|+. ++...+
T Consensus        70 ~vi~G~SAGA~-i~~~~~   86 (154)
T PF03575_consen   70 GVIIGTSAGAM-ILGPSI   86 (154)
T ss_dssp             SEEEEETHHHH-CTSSBS
T ss_pred             CEEEEEChHHh-hccCce
Confidence            99999999999 776544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=93.66  E-value=0.17  Score=47.36  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           56 NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        56 ~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+..+..+.+.|+++.++|.+|.++|.|-. +|++.
T Consensus       303 ~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~~  337 (449)
T TIGR00379       303 ELSQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQS  337 (449)
T ss_pred             HHHhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence            345677889999999999999999999998 88875

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=93.54  E-value=0.15  Score=40.42  Aligned_cols=56  Identities=20%  Similarity=0.248  Sum_probs=40.1

Q ss_pred             cchhhhccCCccEEEEcCCcchHHh-hhcCHHHHHHHHHHHHcC-CcEEEEchhhHHhhhh
Q 023800          213 MLIDEAAKLSYDLIVLPGGLGGAQA-FAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP  271 (277)
Q Consensus       213 ~~~~~~~~~~~D~livpGG~~~~~~-~~~~~~~~~~l~~~~~~~-~~i~aiC~G~~~lLa~  271 (277)
                      .+-.|+  ...|++|||||...... +.+-..+.+-|-++..++ +++-+.|.|.. +|.+
T Consensus        49 KT~~D~--aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI-~LS~  106 (226)
T KOG3210|consen   49 KTKNDL--AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMI-YLSQ  106 (226)
T ss_pred             cCHHHH--hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhh-hhhh
Confidence            333444  46899999999643222 334446888888888777 99999999998 7754

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.32  E-value=0.18  Score=42.28  Aligned_cols=50  Identities=18%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             CCccEEEEcCCcchHHh-h--------------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          221 LSYDLIVLPGGLGGAQA-F--------------AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~-~--------------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      +..|.|++|||..+.+. +              ..+.--..+++.+.+++++|.+||-|.. +|.-
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q-~lnv  121 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQ-LLNV  121 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHH-HHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHH-HHHH
Confidence            46899999999621210 0              1111234466677789999999999999 7743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=93.23  E-value=0.16  Score=42.41  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---C-Ccc--chhccccChHHHHHHHHHHhCCCEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---C-GMP--GATNLKESEVLESIVKKQASDGRLYA   78 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---g-G~~--~~~~~~~~~~~~~~l~~~~~~g~~i~   78 (277)
                      ...+.|++.|+++.+++...  .+              ++++..   | |..  .+..+++ ..+...++++.++++++.
T Consensus        16 sl~~al~~~g~~v~vv~~~~--~l--------------~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvl   78 (210)
T CHL00188         16 SVSRAIQQAGQQPCIINSES--EL--------------AQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFI   78 (210)
T ss_pred             HHHHHHHHcCCcEEEEcCHH--Hh--------------hhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEE
Confidence            56788888999988886431  11              111111   3 321  1222222 245677888888999999


Q ss_pred             EEchhHHHHHHHc
Q 023800           79 AICVFLAVALGSW   91 (277)
Q Consensus        79 aiC~g~~~~La~a   91 (277)
                      +||-|-. +|++.
T Consensus        79 GIClG~Q-ll~~~   90 (210)
T CHL00188         79 GICLGLH-LLFET   90 (210)
T ss_pred             EECHHHH-HHhhc
Confidence            9999999 89886

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=93.16  E-value=0.18  Score=42.59  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCccEEEEcCCcchHHhh--------------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhh
Q 023800          221 LSYDLIVLPGGLGGAQAF--------------AKSKKLVNMLKKQKESNRPYGAICASPALVLE  270 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~--------------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa  270 (277)
                      +..|.|+++||......+              .++.--+.+||++.++++||.+||-|.. +|.
T Consensus        59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Q-llN  121 (243)
T COG2071          59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQ-LLN  121 (243)
T ss_pred             hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchH-HHH
Confidence            468999999993211111              1233457789999999999999999999 775

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.09  E-value=0.19  Score=39.65  Aligned_cols=87  Identities=26%  Similarity=0.360  Sum_probs=57.2

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCC---C--------C----------EEec--CccccccccC---CCccchh
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACH---G--------V----------KIVA--DALVSNCRDA---CGMPGAT   55 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~---g--------~----------~v~~--d~~~~~~~~~---gG~~~~~   55 (277)
                      |.+..+-.+.+.|.+++.+.++. .+.---+   |        +          .+++  ....++.+..   ||++.+.
T Consensus        21 EsVltllai~r~GA~~~cFAP~~-~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~a~~e~~DALivPGGFGAAK   99 (217)
T COG3155          21 ESVLTLLAISRSGAQAVCFAPDK-QQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQADAEELDALIVPGGFGAAK   99 (217)
T ss_pred             HHHHHHHHHHhcCceeEEecCCc-hhhhhhhhccccccchhhhHHHHHHHHhhccccchhhcCHHhcceeeccCccchhh
Confidence            55667778889999999999986 3211111   1        0          1111  1111111111   7765444


Q ss_pred             cc----------ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800           56 NL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGS   90 (277)
Q Consensus        56 ~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~   90 (277)
                      ++          +-++++.++.+.|++.||+++=||-+|. +|.+
T Consensus       100 NLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pk  143 (217)
T COG3155         100 NLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPK  143 (217)
T ss_pred             hhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHH
Confidence            43          4579999999999999999999999998 7776

>PRK06490 glutamine amidotransferase; Provisional

Probab=92.86  E-value=0.42  Score=40.71  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=46.2

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-ccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ..+.|++.|+++.++.+..+.+.         |+ .+++++..   ||..... ...-...+.+||++..+.++++.+||
T Consensus        24 l~~~l~~~g~~~~v~~~~~~~~~---------p~-~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC   93 (239)
T PRK06490         24 VGQLLQERGYPLDIRRPRLGDPL---------PD-TLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGIC   93 (239)
T ss_pred             HHHHHHHCCCceEEEeccCCCCC---------CC-cccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEEC
Confidence            34566777888887765432111         11 12233222   6532211 11112457789999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      -|.. +|+.+
T Consensus        94 ~G~Q-lla~a  102 (239)
T PRK06490         94 LGAQ-MLARH  102 (239)
T ss_pred             HhHH-HHHHH
Confidence            9999 89997

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=92.81  E-value=1.2  Score=41.58  Aligned_cols=135  Identities=14%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             CCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhccc----Ccccccc-CCCCeEEEEecCCCchhhHHHHH
Q 023800          106 RGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEF----NPVQWTF-DNSPQILVPIANGSEEMEAVIII  180 (277)
Q Consensus       106 ~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~kV~ill~~g~~~~e~~~~~  180 (277)
                      +|-.+..+=++..+|++.|..       .+..-+.-...+...+-    ..+...- ++..+|+++-+|..+-..-..|+
T Consensus       199 RGd~~ll~~gik~Le~~tg~~-------vlGv~P~~~~~~~p~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~dpL  271 (486)
T COG1492         199 RGDESLLDPGLKWLEELTGVP-------VLGVLPYLKDALRPAEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFDPL  271 (486)
T ss_pred             CCCHHHHhhHHHHHHHhhCCe-------eEeeccccccccCccccccCchhhcccCCCCceEEEEecCCCccccccchhh
Confidence            566677888888888887763       22222222221111111    1111111 23458999988854433333333


Q ss_pred             HHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--CHHHHHHHHHHHHcCCcE
Q 023800          181 DILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQKESNRPY  258 (277)
Q Consensus       181 ~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--~~~~~~~l~~~~~~~~~i  258 (277)
                      ...  .+.++.++.+...                +     .+.|++|+||-.....++..  ..-+-.-+++..+++.+|
T Consensus       272 ~~~--~~v~v~~v~~~~~----------------l-----~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~v  328 (486)
T COG1492         272 RAE--PDVRVRFVKPGSD----------------L-----RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDV  328 (486)
T ss_pred             hcC--CCeEEEEeccCCC----------------C-----CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCE
Confidence            332  4778888866543                2     23699999997543333321  223334556667779999


Q ss_pred             EEEchhhHHhhhh
Q 023800          259 GAICASPALVLEP  271 (277)
Q Consensus       259 ~aiC~G~~~lLa~  271 (277)
                      .+||.|-. +|.+
T Consensus       329 iGICGG~Q-mLG~  340 (486)
T COG1492         329 IGICGGYQ-MLGR  340 (486)
T ss_pred             EEEcchHH-hhhh
Confidence            99999999 6854

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=92.58  E-value=0.22  Score=45.63  Aligned_cols=72  Identities=26%  Similarity=0.361  Sum_probs=53.7

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      -++.|++.|.++.++||-.++.+-.             +++..   ||+|=  +..+.+++.+.+.|++++++|++|-|=
T Consensus       263 nl~~Lr~~GAelv~FSPL~D~~lP~-------------~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaE  329 (451)
T COG1797         263 NLELLREAGAELVFFSPLADEELPP-------------DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAE  329 (451)
T ss_pred             HHHHHHHCCCEEEEeCCcCCCCCCC-------------CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEe
Confidence            3577889999999999865322211             22221   67632  345788999999999999999999999


Q ss_pred             chhHHHHHHHc
Q 023800           81 CVFLAVALGSW   91 (277)
Q Consensus        81 C~g~~~~La~a   91 (277)
                      |.|-+ .|.+.
T Consensus       330 CGGlM-YL~~~  339 (451)
T COG1797         330 CGGLM-YLGES  339 (451)
T ss_pred             cccce-eehhh
Confidence            99998 78764

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=92.28  E-value=0.53  Score=49.09  Aligned_cols=39  Identities=21%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCC
Q 023800           57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG   96 (277)
Q Consensus        57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g   96 (277)
                      +..++.+.+-+++|.++++++.+||.|-. +|.+.|||-+
T Consensus      1057 ~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~ 1095 (1239)
T TIGR01857      1057 ILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPY 1095 (1239)
T ss_pred             HhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcC
Confidence            45678899999999999999999999999 9999999985

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK00784 cobyric acid synthase; Provisional

Probab=92.23  E-value=0.28  Score=46.38  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800           59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSWG   92 (277)
Q Consensus        59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG   92 (277)
                      ++..+.+.|+++.++|+++.++|.|-. +|++.-
T Consensus       310 ~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~~~  342 (488)
T PRK00784        310 RESGWDEAIRAHARRGGPVLGICGGYQ-MLGRRI  342 (488)
T ss_pred             HHcCHHHHHHHHHHcCCeEEEECHHHH-HHhhhc
Confidence            455688899999999999999999999 898864

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=92.12  E-value=0.28  Score=43.24  Aligned_cols=107  Identities=12%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             CCCeEEEEe-cCCCchhhHHHHHHHHHhC--CCeEEEEeeCCCceEE-cccCcEEEeCcchhhhccCCccEEEEcCCcch
Q 023800          159 NSPQILVPI-ANGSEEMEAVIIIDILRRA--KANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG  234 (277)
Q Consensus       159 ~~~kV~ill-~~g~~~~e~~~~~~~l~~a--~~~v~~vs~~~~~~v~-~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~  234 (277)
                      ++.||+||= .|.-..+|. -++..|...  .++++++....- .-+ ++....-.--.+++++....||++||.|....
T Consensus        34 rpl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e  111 (302)
T PRK05368         34 RPLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVE  111 (302)
T ss_pred             CCccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCC
Confidence            357888885 465556664 334444333  245666655432 111 11111011124567776678999999997421


Q ss_pred             HHhhhc------CHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          235 AQAFAK------SKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       235 ~~~~~~------~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .....+      ..++.+|++   ++.+.+..||-|.. +++.
T Consensus       112 ~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQ-a~a~  150 (302)
T PRK05368        112 QLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQ-AALY  150 (302)
T ss_pred             CccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHH-HHHH
Confidence            101111      234555555   56899999999999 6664

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=91.88  E-value=0.58  Score=38.30  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=45.9

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ...+.|++.|+++.++..+...           ++ .+++.+..   ||. +..  ...+.+.+++++ .+.++++.+||
T Consensus        16 ~i~~~l~~~g~~~~v~~~~~~~-----------~~-~l~~~d~iIi~gGp-~~~--~~~~~~~~~i~~-~~~~~PiLGIC   79 (190)
T PRK06895         16 NLVDLIRKLGVPMQVVNVEDLD-----------LD-EVENFSHILISPGP-DVP--RAYPQLFAMLER-YHQHKSILGVC   79 (190)
T ss_pred             HHHHHHHHcCCcEEEEECCccC-----------hh-HhccCCEEEECCCC-CCh--HHhhHHHHHHHH-hcCCCCEEEEc
Confidence            3567888889999998865310           00 11222211   663 321  123567888886 67899999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      -|.. +|+.+
T Consensus        80 lG~Q-lla~~   88 (190)
T PRK06895         80 LGHQ-TLCEF   88 (190)
T ss_pred             HHHH-HHHHH
Confidence            9999 89988

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=91.80  E-value=0.54  Score=49.35  Aligned_cols=90  Identities=13%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             HHHHHHhCCCeEEEEeeCC---C-ceeecCCCCEEecCccccccccCCCccc-hhccccChHHHHHHHHHH-hCCCEEEE
Q 023800            6 TIDVLRRSGADVVVASVEK---Q-LRVDACHGVKIVADALVSNCRDACGMPG-ATNLKESEVLESIVKKQA-SDGRLYAA   79 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~---~-~~v~~~~g~~v~~d~~~~~~~~~gG~~~-~~~~~~~~~~~~~l~~~~-~~g~~i~a   79 (277)
                      ....|.++||++..+..+.   + .......|+.+.=-.+..|... .| .+ ...+..++.+.+-+++|. +.++++.+
T Consensus      1054 ~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~-sg-~~wa~~i~~n~~~~~~~~~f~~~~d~~~LG 1131 (1307)
T PLN03206       1054 MAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLD-SA-KGWAGSIRFNEPLLQQFQEFYNRPDTFSLG 1131 (1307)
T ss_pred             HHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccc-hH-HHHHHHHHhChHHHHHHHHHHhCCCceEEE
Confidence            3567778898887777653   0 0011112222221111111111 11 11 224567889999999999 55999999


Q ss_pred             EchhHHHHHHHcCCCCCCC
Q 023800           80 ICVFLAVALGSWGLLKGLK   98 (277)
Q Consensus        80 iC~g~~~~La~aGll~g~~   98 (277)
                      ||.|-. +|.+.|||.|-.
T Consensus      1132 ICNGfQ-iL~~lgllPg~~ 1149 (1307)
T PLN03206       1132 VCNGCQ-LMALLGWVPGPQ 1149 (1307)
T ss_pred             EcHHHH-HHHHcCCCCCCc
Confidence            999999 999999998754

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=91.57  E-value=0.31  Score=40.17  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800           63 LESIVKKQASDGRLYAAICVFLAVALGSWG   92 (277)
Q Consensus        63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aG   92 (277)
                      +..+++++.+.+++|.+||.|.. +|+++.
T Consensus        60 ~~~l~~~~~~~~~pvlGiC~G~Q-ll~~~~   88 (196)
T TIGR01855        60 LDLFVELVVRLGKPVLGICLGMQ-LLFERS   88 (196)
T ss_pred             cHHHHHHHHhCCCCEEEECHHHH-Hhhhcc
Confidence            34455878889999999999999 999984

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=91.56  E-value=0.39  Score=47.92  Aligned_cols=70  Identities=29%  Similarity=0.338  Sum_probs=50.4

Q ss_pred             HHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEE
Q 023800          180 IDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYG  259 (277)
Q Consensus       180 ~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~  259 (277)
                      +..|...|.++.++-.+                ..+++   .+||.|++..|.+++.   .-+.+.+-+++....++||.
T Consensus       187 IRcL~~RGa~vtVvPw~----------------~~i~~---~~yDGlflSNGPGdPe---~~~~~v~~vr~lL~~~~Pvf  244 (1435)
T KOG0370|consen  187 IRCLVKRGAEVTVVPWD----------------YPIAK---EEYDGLFLSNGPGDPE---LCPLLVQNVRELLESNVPVF  244 (1435)
T ss_pred             HHHHHHhCceEEEecCC----------------ccccc---cccceEEEeCCCCCch---hhHHHHHHHHHHHhCCCCeE
Confidence            44555567777666433                33444   3699999999865444   34567777788777789999


Q ss_pred             EEchhhHHhhhhC
Q 023800          260 AICASPALVLEPH  272 (277)
Q Consensus       260 aiC~G~~~lLa~a  272 (277)
                      +||.|-. +||.+
T Consensus       245 GIClGHQ-llA~A  256 (1435)
T KOG0370|consen  245 GICLGHQ-LLALA  256 (1435)
T ss_pred             EEehhhH-HHHHh
Confidence            9999999 89874

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=91.47  E-value=0.96  Score=45.05  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             EEEecCCCchhhHHHHHHHHHhC---CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          164 LVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       164 ~ill~~g~~~~e~~~~~~~l~~a---~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      -|++.|.++.... -.++.|++.   +.++.++..+..           . ...+.+  ...||.|||.||.+.+.    
T Consensus         7 ~iL~ID~~DSft~-nl~~~l~~~~g~~~~v~vv~~d~~-----------~-~~~~~~--l~~~D~VVIspGPG~p~----   67 (742)
T TIGR01823         7 HVLFIDSYDSFTY-NVVRLLEQQTDISVHVTTVHSDTF-----------Q-DQLLEL--LPLFDAIVVGPGPGNPN----   67 (742)
T ss_pred             eEEEEeCCcchHH-HHHHHHHHhcCCCcEEEEEeCCCC-----------c-hhhhhh--hcCCCEEEECCCCCCcc----
Confidence            3444565544432 344556654   356666654421           0 001112  24689999988764332    


Q ss_pred             CHHHHHHHHHHHHc----CCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKES----NRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~----~~~i~aiC~G~~~lLa~a  272 (277)
                      ++.-..++++..+.    ++||.+||.|.. +|+.+
T Consensus        68 ~~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a  102 (742)
T TIGR01823        68 NAQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA  102 (742)
T ss_pred             chhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence            22334455555543    499999999999 88875

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=91.37  E-value=1.9  Score=36.17  Aligned_cols=100  Identities=23%  Similarity=0.205  Sum_probs=62.5

Q ss_pred             CeEEEEecCCCchhhH-HHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHh
Q 023800          161 PQILVPIANGSEEMEA-VIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~-~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~  237 (277)
                      .||+++-.......+. -...+.|++.|. +++++..... .        -..+..+.+. ....|+|++.||... ...
T Consensus        30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~-l~~ad~I~~~GG~~~~~~~   99 (217)
T cd03145          30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVAR-LRDADGIFFTGGDQLRITS   99 (217)
T ss_pred             CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHH-HHhCCEEEEeCCcHHHHHH
Confidence            5788887665444333 335667777786 4565544321 1        0011111111 246899999999631 111


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ......+.+.|++.+++|.++++...|+. ++.+
T Consensus       100 ~l~~t~l~~~l~~~~~~G~v~~G~SAGA~-i~~~  132 (217)
T cd03145         100 ALGGTPLLDALRKVYRGGVVIGGTSAGAA-VMSD  132 (217)
T ss_pred             HHcCChHHHHHHHHHHcCCEEEEccHHHH-hhhh
Confidence            22345788899999999999999999999 7765

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=90.96  E-value=1.1  Score=45.32  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcchhhhc-----cCCccEEEEcCCcchHH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAA-----KLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~-----~~~~D~livpGG~~~~~  236 (277)
                      +-||+.|+++-.... .++.|+.. |.++.++-.+.               .+++++.     ...||.|||-+|.+.+.
T Consensus        82 ~~iLlIDnyDSfTyN-L~~~L~~~~g~~~~Vv~nd~---------------~~~~~~~~~~~~~~~~d~IVlSPGPG~P~  145 (918)
T PLN02889         82 VRTLLIDNYDSYTYN-IYQELSIVNGVPPVVVRNDE---------------WTWEEVYHYLYEEKAFDNIVISPGPGSPT  145 (918)
T ss_pred             ceEEEEeCCCchHHH-HHHHHHHhcCCCEEEEeCCC---------------CCHHHHHhhhhcccCCCEEEECCCCCCcc
Confidence            346667887776654 56667766 77877775542               1233321     13689999988865443


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...+.....+.|++.  .+.+|.+||-|-. +|+.+
T Consensus       146 ~~~d~Gi~~~~i~~~--~~iPILGICLGhQ-~i~~~  178 (918)
T PLN02889        146 CPADIGICLRLLLEC--RDIPILGVCLGHQ-ALGYV  178 (918)
T ss_pred             chHHHHHHHHHHHHh--CCCcEEEEcHHHH-HHHHh
Confidence            211112234555543  4799999999999 78764

>PHA03366 FGAM-synthase; Provisional

Probab=90.91  E-value=0.68  Score=48.84  Aligned_cols=88  Identities=10%  Similarity=0.038  Sum_probs=54.9

Q ss_pred             HHHHHHhCCCeEEEEeeCC---CceeecCCCCEEecCccccccccCCCccchhccccChHHHHHHHHHH-hCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEK---QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~---~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC   81 (277)
                      ....|.++||++..+..+.   +..+..-.|+.+.=-.+..|... +|..-+..+..|+.+.+.+++|+ +.++.+.+||
T Consensus      1045 ~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~-~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiC 1123 (1304)
T PHA03366       1045 LLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYT-GARAAVAALLSNPAVRDALLRFLNRPDTFSLGCG 1123 (1304)
T ss_pred             HHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCccccc-HHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeC
Confidence            4567788999988888764   11111111222211111111111 22111234567899999999999 5699999999


Q ss_pred             h-hHHHHHHHcCCCC
Q 023800           82 V-FLAVALGSWGLLK   95 (277)
Q Consensus        82 ~-g~~~~La~aGll~   95 (277)
                      . |-. +|++.|++.
T Consensus      1124 N~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366       1124 ELGCQ-ILFALKAVG 1137 (1304)
T ss_pred             cHHHH-HHHHcCCcc
Confidence            9 999 999999994

>TIGR02069 cyanophycinase cyanophycinase

Probab=90.71  E-value=2.3  Score=36.47  Aligned_cols=100  Identities=20%  Similarity=0.201  Sum_probs=62.7

Q ss_pred             CeEEEEecCCCchhh-HHHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHh
Q 023800          161 PQILVPIANGSEEME-AVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e-~~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~  237 (277)
                      .||+|+-.-.....+ .....+.|+..|. +++++..... .  .      ..+..+.+. ....|+|++.||... ...
T Consensus        29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~--~------a~~~~~~~~-l~~ad~I~~~GGnq~~l~~   98 (250)
T TIGR02069        29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E--D------ASDENAIAL-LSNATGIFFTGGDQLRITS   98 (250)
T ss_pred             ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H--H------ccCHHHHHH-HhhCCEEEEeCCCHHHHHH
Confidence            578887654434333 3346678888887 4666654321 0  0      011111111 246899999999631 111


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ......+.+.|++.+++|.++++...|+. ++.+
T Consensus        99 ~l~~t~l~~~l~~~~~~G~vi~G~SAGA~-i~~~  131 (250)
T TIGR02069        99 LLGDTPLLDRLRKRVHEGIILGGTSAGAA-VMSD  131 (250)
T ss_pred             HHcCCcHHHHHHHHHHcCCeEEEccHHHH-hccc
Confidence            23455788899999999999999999998 7753

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=89.80  E-value=0.65  Score=38.20  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCc-cchhccccChHHHHHHHHHHhCCCEEEEEchhH
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGM-PGATNLKESEVLESIVKKQASDGRLYAAICVFL   84 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~-~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~   84 (277)
                      ....|++.|+++.+.+...  .+....++-+.=-         |-+ ..+..+++. .+.+.|++....++++.+||-|.
T Consensus        17 v~~Aler~G~~~~vs~d~~--~i~~AD~liLPGV---------Gaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGIClGM   84 (204)
T COG0118          17 VKKALERLGAEVVVSRDPE--EILKADKLILPGV---------GAFGAAMANLRER-GLIEAIKEAVESGKPFLGICLGM   84 (204)
T ss_pred             HHHHHHHcCCeeEEecCHH--HHhhCCEEEecCC---------CCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEEeHhH
Confidence            4556777777776655332  2333333333211         211 124445544 88999999999999999999999


Q ss_pred             HHHHHHcCC
Q 023800           85 AVALGSWGL   93 (277)
Q Consensus        85 ~~~La~aGl   93 (277)
                      . +|.+.+.
T Consensus        85 Q-lLfe~Se   92 (204)
T COG0118          85 Q-LLFERSE   92 (204)
T ss_pred             H-hhhhccc
Confidence            9 8887664

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=89.58  E-value=1.1  Score=47.11  Aligned_cols=88  Identities=13%  Similarity=0.079  Sum_probs=55.2

Q ss_pred             HHHHHHhCCCeEEEEeeCC---CceeecCCCCEEecCccccccccCCCccc-hhccccChHHHHHHHHHH-hCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEK---QLRVDACHGVKIVADALVSNCRDACGMPG-ATNLKESEVLESIVKKQA-SDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~---~~~v~~~~g~~v~~d~~~~~~~~~gG~~~-~~~~~~~~~~~~~l~~~~-~~g~~i~ai   80 (277)
                      ....|.++||++..+..+.   +.....-.|+.+  -.-+.--+..|+-.+ ...+..++.+.+.+++|+ +.++.+.+|
T Consensus       946 ~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~--~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGi 1023 (1202)
T TIGR01739       946 LLAALTNAGFDPRIVSITELKKTDFLDTFSGLII--GGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGF 1023 (1202)
T ss_pred             HHHHHHHcCCceEEEEeccCCCCCchhheEEEEE--cCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEe
Confidence            4567888999998888764   011111112211  111111111121122 334567899999999999 569999999


Q ss_pred             ch-hHHHHHHHcCCCCC
Q 023800           81 CV-FLAVALGSWGLLKG   96 (277)
Q Consensus        81 C~-g~~~~La~aGll~g   96 (277)
                      |. |-. +|++.|++..
T Consensus      1024 CN~G~Q-~L~~lg~l~~ 1039 (1202)
T TIGR01739      1024 GELGCQ-LLLALNIVGY 1039 (1202)
T ss_pred             CcHHHH-HHHHcCCCcC
Confidence            99 999 9999999964

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=89.49  E-value=0.91  Score=43.40  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ..+.+.|+++.+.|+++.+||.|.. +|+++
T Consensus        66 ~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         66 RGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             cCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            3477788999999999999999999 99975

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=89.31  E-value=0.67  Score=38.60  Aligned_cols=30  Identities=30%  Similarity=0.467  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhCCCEEEEEchhHHHHHHHcCC
Q 023800           63 LESIVKKQASDGRLYAAICVFLAVALGSWGL   93 (277)
Q Consensus        63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl   93 (277)
                      ...+++...++++++.+||.|.. +|++++.
T Consensus        66 ~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~   95 (209)
T PRK13146         66 GEAVIEAVLAAGRPFLGICVGMQ-LLFERGL   95 (209)
T ss_pred             HHHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence            34455555678999999999999 9999854

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=89.20  E-value=1  Score=36.83  Aligned_cols=69  Identities=16%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      .++.|++.|+++.++..+. ..+..           +.+...+     ||...+.   +.....++++++ +++++|.+|
T Consensus        15 ~~~~l~~~g~~v~v~~~~~-~~~~~-----------~~~~~~d~iilsgGpg~p~---~~~~~~~~i~~~-~~~~PvLGI   78 (188)
T TIGR00566        15 LVQYFCELGAEVVVKRNDS-LTLQE-----------IEALLPLLIVISPGPCTPN---EAGISLEAIRHF-AGKLPILGV   78 (188)
T ss_pred             HHHHHHHcCCceEEEECCC-CCHHH-----------HHhcCCCEEEEcCCCCChh---hcchhHHHHHHh-ccCCCEEEE
Confidence            3556777788888777553 11111           1111111     6632222   223347888887 678999999


Q ss_pred             chhHHHHHHHc
Q 023800           81 CVFLAVALGSW   91 (277)
Q Consensus        81 C~g~~~~La~a   91 (277)
                      |.|-. +|+.+
T Consensus        79 C~G~Q-ll~~~   88 (188)
T TIGR00566        79 CLGHQ-AMGQA   88 (188)
T ss_pred             CHHHH-HHHHH
Confidence            99999 88876

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=89.13  E-value=1.1  Score=36.47  Aligned_cols=70  Identities=14%  Similarity=0.082  Sum_probs=43.7

Q ss_pred             HHHHHHhCCCeEEEEeeCCC-ceeecCC--CCEEecCccccccccCCCccchhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            6 TIDVLRRSGADVVVASVEKQ-LRVDACH--GVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~-~~v~~~~--g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      ..+.|++.|+++.++..+.. ..+....  |+-+.           ||. ..   ..+.....|+++..+.++++.+||.
T Consensus        14 l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~-----------Gg~-~~---~~~~~~~~~i~~~~~~~~PilGIC~   78 (188)
T TIGR00888        14 IARRLRELGVYSELVPNTTPLEEIREKNPKGIILS-----------GGP-SS---VYAENAPRADEKIFELGVPVLGICY   78 (188)
T ss_pred             HHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEEC-----------CCC-CC---cCcCCchHHHHHHHhCCCCEEEECH
Confidence            45678888998888765421 0111100  11111           552 22   1223456788888999999999999


Q ss_pred             hHHHHHHHc
Q 023800           83 FLAVALGSW   91 (277)
Q Consensus        83 g~~~~La~a   91 (277)
                      |.. +|+.+
T Consensus        79 G~Q-ll~~~   86 (188)
T TIGR00888        79 GMQ-LMAKQ   86 (188)
T ss_pred             HHH-HHHHh
Confidence            999 89876

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=88.61  E-value=3.5  Score=32.70  Aligned_cols=85  Identities=20%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             eEEEEec--CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          162 QILVPIA--NGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       162 kV~ill~--~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      |++|+-.  +|-.--=.......|++.|++|++.-...-                 ...++++||.|+|...   .....
T Consensus         2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~-----------------~~~~l~~ydavVIgAs---I~~~h   61 (175)
T COG4635           2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV-----------------EEPALEDYDAVVIGAS---IRYGH   61 (175)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh-----------------hccChhhCceEEEecc---hhhhh
Confidence            4444433  333333334566677778888887755432                 2234568999999653   34455


Q ss_pred             cCHHHHHHHHHHHH--cCCcEEEEchhhH
Q 023800          240 KSKKLVNMLKKQKE--SNRPYGAICASPA  266 (277)
Q Consensus       240 ~~~~~~~~l~~~~~--~~~~i~aiC~G~~  266 (277)
                      .++.+.+|+++..+  ..+|.+.+|.+..
T Consensus        62 ~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~   90 (175)
T COG4635          62 FHEAVQSFVKKHAEALSTKPSAFFSVNLT   90 (175)
T ss_pred             hHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence            68899999998776  5899999998765

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=88.32  E-value=1  Score=41.83  Aligned_cols=68  Identities=32%  Similarity=0.372  Sum_probs=43.2

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ++.|++. .++..+|+-.+..              +.+++..   ||.+-  ...++.+... +-|+++.++|++|.|+|
T Consensus       252 l~~L~~~-aelv~fSPl~~~~--------------lp~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeC  315 (433)
T PRK13896        252 IERLRER-ADVVTFSPVAGDP--------------LPDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGEC  315 (433)
T ss_pred             HHHHHhc-CcEEEEcCCCCCC--------------CCCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEe
Confidence            4567777 7888888743221              2222211   55421  1224455455 78899999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      .|-+ +|.+.
T Consensus       316 GG~q-~L~~~  324 (433)
T PRK13896        316 GGLM-ALAES  324 (433)
T ss_pred             hHHH-Hhhcc
Confidence            9998 88773

>PRK05665 amidotransferase; Provisional

Probab=88.24  E-value=0.62  Score=39.73  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ..+.+||++..++++++.+||-|-. +||.+
T Consensus        78 ~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A  107 (240)
T PRK05665         78 QTLKTYLLKLYERGDKLLGVCFGHQ-LLALL  107 (240)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence            5678999999999999999999999 89886

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=88.00  E-value=1.4  Score=46.67  Aligned_cols=39  Identities=5%  Similarity=0.048  Sum_probs=33.5

Q ss_pred             ccccChHHHHHHHHHH-hCCCEEEEEchhHHHHHHHcC-CCC
Q 023800           56 NLKESEVLESIVKKQA-SDGRLYAAICVFLAVALGSWG-LLK   95 (277)
Q Consensus        56 ~~~~~~~~~~~l~~~~-~~g~~i~aiC~g~~~~La~aG-ll~   95 (277)
                      .+..|+.+.+-+++|+ ++++++.+||.|-. +|.+.| |+.
T Consensus      1105 ~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p 1145 (1290)
T PRK05297       1105 SILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIP 1145 (1290)
T ss_pred             HhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccC
Confidence            3456889999999987 78999999999999 999998 543

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=87.95  E-value=0.49  Score=37.51  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=30.6

Q ss_pred             cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800           57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG   92 (277)
Q Consensus        57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG   92 (277)
                      +.++..+.+.|+++.++|++|.|+|.|-. +|.+.=
T Consensus        25 l~~~~~~~~~I~~~~~~G~pi~aeCGG~~-~Lg~~i   59 (158)
T PF07685_consen   25 LSRNRGLKEAIREAAEAGGPIYAECGGYQ-YLGESI   59 (158)
T ss_pred             HHHHhCHHHHHHHHHHcCCcEEEEchHHH-HHHHHH
Confidence            45677899999999999999999999998 888753

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=87.88  E-value=0.75  Score=37.87  Aligned_cols=69  Identities=22%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCC-Cccch--hccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC-GMPGA--TNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~g-G~~~~--~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      ....|++.|+++.++....  .+....++-+ |          | |....  ..+++ ..+.++++   +.+++|.+||.
T Consensus        16 ~~~~l~~~g~~~~~v~~~~--~~~~~d~iIl-P----------G~G~~~~~~~~l~~-~~l~~~i~---~~~~PilGICl   78 (196)
T PRK13170         16 VKFAIERLGYEPVVSRDPD--VILAADKLFL-P----------GVGTAQAAMDQLRE-RELIDLIK---ACTQPVLGICL   78 (196)
T ss_pred             HHHHHHHCCCeEEEECCHH--HhCCCCEEEE-C----------CCCchHHHHHHHHH-cChHHHHH---HcCCCEEEECH
Confidence            4567888888888886331  2222222222 1          4 32111  11111 23444444   45899999999


Q ss_pred             hHHHHHHHcC
Q 023800           83 FLAVALGSWG   92 (277)
Q Consensus        83 g~~~~La~aG   92 (277)
                      |.. +|+.+.
T Consensus        79 G~Q-ll~~~~   87 (196)
T PRK13170         79 GMQ-LLGERS   87 (196)
T ss_pred             HHH-HHhhhc
Confidence            999 899874

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=87.58  E-value=1.5  Score=38.86  Aligned_cols=74  Identities=24%  Similarity=0.361  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC-Cc-chHHhhhcCHHHHHHHHHHHH
Q 023800          176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GL-GGAQAFAKSKKLVNMLKKQKE  253 (277)
Q Consensus       176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-G~-~~~~~~~~~~~~~~~l~~~~~  253 (277)
                      +-.+..+++.-||+++.+-..                   .|+  ...|-+|+|| |. ....+......+.+-|++..+
T Consensus        14 ~~si~nal~hlg~~i~~v~~P-------------------~DI--~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yie   72 (541)
T KOG0623|consen   14 VRSIRNALRHLGFSIKDVQTP-------------------GDI--LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIE   72 (541)
T ss_pred             HHHHHHHHHhcCceeeeccCc-------------------hhh--ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHh
Confidence            345556667777777666332                   222  3468899998 32 222334556788899999999


Q ss_pred             cCCcEEEEchhhHHhhhh
Q 023800          254 SNRPYGAICASPALVLEP  271 (277)
Q Consensus       254 ~~~~i~aiC~G~~~lLa~  271 (277)
                      .||++.+||.|-. +|-+
T Consensus        73 sgkPfmgicvGlQ-aLF~   89 (541)
T KOG0623|consen   73 SGKPFMGICVGLQ-ALFD   89 (541)
T ss_pred             cCCCeEeehhhHH-HHhc
Confidence            9999999999999 6744

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=86.59  E-value=6.4  Score=32.85  Aligned_cols=89  Identities=19%  Similarity=0.148  Sum_probs=59.2

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCC---CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~---~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      ++|.|.--+|.+...+-..++.|+.--   +.+..|..  +         .+. +..|.+    .--+|++|||.. ..-
T Consensus         1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~--~---------~Li-~EpW~~----~T~lLV~pGGaD-lpY   63 (253)
T COG4285           1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDA--Q---------FLI-KEPWEE----TTLLLVFPGGAD-LPY   63 (253)
T ss_pred             CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeee--h---------eee-cCcchh----ceEEEEecCCCC-chH
Confidence            468888888999999999998888642   35555532  2         122 222443    345899999953 221


Q ss_pred             h-hcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800          238 F-AKSKKLVNMLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       238 ~-~~~~~~~~~l~~~~~~~~~i~aiC~G~~  266 (277)
                      . .-++--.+-|....++|..-.+||.|..
T Consensus        64 ~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y   93 (253)
T COG4285          64 VQVLQGLGTARIKNYVKEGGNFLGICAGGY   93 (253)
T ss_pred             HHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence            1 2234445667778899999999999986

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=86.56  E-value=2.1  Score=35.02  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=42.4

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      .++.|++.|+++.++..+. .+...           +.+...+     ||...+.   +......+++. .+++++|.+|
T Consensus        15 l~~~l~~~~~~~~v~~~~~-~~~~~-----------~~~~~~~~iilsgGP~~~~---~~~~~~~~i~~-~~~~~PiLGI   78 (191)
T PRK06774         15 LYQYFCELGTEVMVKRNDE-LQLTD-----------IEQLAPSHLVISPGPCTPN---EAGISLAVIRH-FADKLPILGV   78 (191)
T ss_pred             HHHHHHHCCCcEEEEeCCC-CCHHH-----------HHhcCCCeEEEcCCCCChH---hCCCchHHHHH-hcCCCCEEEE
Confidence            4677888899998888653 11110           1111111     6632332   22334566665 4678999999


Q ss_pred             chhHHHHHHHc
Q 023800           81 CVFLAVALGSW   91 (277)
Q Consensus        81 C~g~~~~La~a   91 (277)
                      |-|.. +|+.+
T Consensus        79 C~G~Q-lla~~   88 (191)
T PRK06774         79 CLGHQ-ALGQA   88 (191)
T ss_pred             CHHHH-HHHHH
Confidence            99999 89887

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=86.49  E-value=0.48  Score=38.33  Aligned_cols=94  Identities=10%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             CCCchhhHHHHHHHHHhCC--CeEEEEeeCCCceEEc-ccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC----
Q 023800          169 NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILA-SCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS----  241 (277)
Q Consensus       169 ~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~~-~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~----  241 (277)
                      |.-..+|. .....|....  .+++++-+... ..+. .....-.--.+++++....||.+||.|..  ...+...    
T Consensus         8 p~k~~TE~-qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Y   83 (175)
T cd03131           8 PDKIQTER-QFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAP--VEHLPFEQVDY   83 (175)
T ss_pred             CCcHHHHH-HHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCC--cccCCccccch
Confidence            43345553 3445554443  45666655543 1111 00000001135666666789999999974  2222222    


Q ss_pred             -HHHHHHHHHHHHcCCcEEEEchhhH
Q 023800          242 -KKLVNMLKKQKESNRPYGAICASPA  266 (277)
Q Consensus       242 -~~~~~~l~~~~~~~~~i~aiC~G~~  266 (277)
                       +++.+.+...-++......+|-|+.
T Consensus        84 w~El~~i~dwa~~~v~stl~iCWgaq  109 (175)
T cd03131          84 WEELTEILDWAKTHVTSTLFSCWAAM  109 (175)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence             2444444444477899999999998

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=86.20  E-value=3.1  Score=33.63  Aligned_cols=70  Identities=17%  Similarity=0.187  Sum_probs=41.1

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEchh
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF   83 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g   83 (277)
                      ...|++.|+++.++..+......        +  .+.+++..   ||. +..  .++ .....+++...+++++.+||-|
T Consensus        15 ~~~l~~~G~~~~~~~~~~~~~~~--------~--~~~~~dgvil~gG~-~~~--~~~-~~~~~i~~~~~~~~PvlGIC~G   80 (184)
T cd01743          15 VQYLRELGAEVVVVRNDEITLEE--------L--ELLNPDAIVISPGP-GHP--EDA-GISLEIIRALAGKVPILGVCLG   80 (184)
T ss_pred             HHHHHHcCCceEEEeCCCCCHHH--------H--hhcCCCEEEECCCC-CCc--ccc-hhHHHHHHHHhcCCCEEEECHh
Confidence            45667789999888876421000        0  11222221   552 221  112 2444555556788999999999


Q ss_pred             HHHHHHHc
Q 023800           84 LAVALGSW   91 (277)
Q Consensus        84 ~~~~La~a   91 (277)
                      .. +|+.+
T Consensus        81 ~Q-lla~~   87 (184)
T cd01743          81 HQ-AIAEA   87 (184)
T ss_pred             HH-HHHHH
Confidence            99 89987

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=86.09  E-value=1.7  Score=45.89  Aligned_cols=39  Identities=10%  Similarity=0.059  Sum_probs=35.2

Q ss_pred             cccChHHHHHHHHHH-hCCCEEEEEchhHHHHHH-HcCCCCC
Q 023800           57 LKESEVLESIVKKQA-SDGRLYAAICVFLAVALG-SWGLLKG   96 (277)
Q Consensus        57 ~~~~~~~~~~l~~~~-~~g~~i~aiC~g~~~~La-~aGll~g   96 (277)
                      +..++.+.+-+++|+ ++++++.+||.|-. +|. ..||+.|
T Consensus      1126 i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~ 1166 (1310)
T TIGR01735      1126 ILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPG 1166 (1310)
T ss_pred             HHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCC
Confidence            567889999999999 88999999999999 899 9999975

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05670 anthranilate synthase component II; Provisional

Probab=86.00  E-value=2.2  Score=34.82  Aligned_cols=68  Identities=16%  Similarity=0.224  Sum_probs=41.7

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      .+.|++.|+++.++..+... ..           .++....+     ||...+.   +.....++++++ .++++|.+||
T Consensus        16 ~~~l~~~g~~~~v~~~~~~~-~~-----------~~~~~~~dglIlsgGpg~~~---d~~~~~~~l~~~-~~~~PvLGIC   79 (189)
T PRK05670         16 VQYLGELGAEVVVYRNDEIT-LE-----------EIEALNPDAIVLSPGPGTPA---EAGISLELIREF-AGKVPILGVC   79 (189)
T ss_pred             HHHHHHCCCcEEEEECCCCC-HH-----------HHHhCCCCEEEEcCCCCChH---HcchHHHHHHHh-cCCCCEEEEC
Confidence            45677789999888875311 00           00111111     6632232   223466788764 5779999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      -|.. +|+.+
T Consensus        80 lG~Q-lla~a   88 (189)
T PRK05670         80 LGHQ-AIGEA   88 (189)
T ss_pred             HHHH-HHHHH
Confidence            9999 88887

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=85.47  E-value=1  Score=37.17  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+...+||++....+++|.+||.|.. +||.+
T Consensus        65 ~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~   95 (198)
T COG0518          65 LPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA   95 (198)
T ss_pred             chhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence            67889999999999999999999999 88875

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=85.30  E-value=2.5  Score=34.83  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             HHHHHHH-HhCCCEEEEEchhHHHHHHHcC
Q 023800           64 ESIVKKQ-ASDGRLYAAICVFLAVALGSWG   92 (277)
Q Consensus        64 ~~~l~~~-~~~g~~i~aiC~g~~~~La~aG   92 (277)
                      ...|+++ .+.+++|.+||.|.. +|+.++
T Consensus        62 ~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~~   90 (201)
T PRK13152         62 IEALKEQVLVQKKPILGICLGMQ-LFLERG   90 (201)
T ss_pred             HHHHHHHHHhCCCcEEEECHhHH-HHhhcc
Confidence            4445554 588999999999999 899884

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=85.24  E-value=1  Score=36.86  Aligned_cols=30  Identities=13%  Similarity=0.181  Sum_probs=26.0

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ....++++++.+.+++|.+||.|.. +|+.+
T Consensus        87 ~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~  116 (189)
T cd01745          87 AFELALLRAALERGKPILGICRGMQ-LLNVA  116 (189)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence            3457899999999999999999999 77775

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=85.24  E-value=1.2  Score=36.31  Aligned_cols=42  Identities=17%  Similarity=0.064  Sum_probs=31.2

Q ss_pred             CCc-cchhccccChHHHHHHHHHHhCC-CEEEEEchhHHHHHHHc
Q 023800           49 CGM-PGATNLKESEVLESIVKKQASDG-RLYAAICVFLAVALGSW   91 (277)
Q Consensus        49 gG~-~~~~~~~~~~~~~~~l~~~~~~g-~~i~aiC~g~~~~La~a   91 (277)
                      ||. ..+..+.....+.+-|+++.++| ++|-+-|+|.. +||+.
T Consensus        41 GGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlI-lLa~~   84 (188)
T PF01174_consen   41 GGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLI-LLAKE   84 (188)
T ss_dssp             SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHH-HHEEE
T ss_pred             CCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHH-Hhhhh
Confidence            663 22334555668899999999998 99999999998 77764

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=84.79  E-value=2.3  Score=35.52  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSWG   92 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG   92 (277)
                      ..+.++|+++.++++++.+||.|.. +|+++.
T Consensus        59 ~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~~   89 (210)
T PRK14004         59 TGLRSTIDKHVESGKPLFGICIGFQ-ILFESS   89 (210)
T ss_pred             cCcHHHHHHHHHcCCCEEEECHhHH-HHHHhc
Confidence            3588889999999999999999999 899864

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=84.70  E-value=1.3  Score=36.05  Aligned_cols=73  Identities=18%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEchh
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF   83 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g   83 (277)
                      ...|++.|.++.++..+......        .+ .+.+.+..   ||.....   +.+....++++..+.++++.+||-|
T Consensus        14 ~~~l~~~~~~~~v~~~~~~~~~~--------~~-~~~~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~~PilGIC~G   81 (192)
T PF00117_consen   14 VRALRELGIDVEVVRVDSDFEEP--------LE-DLDDYDGIIISGGPGSPY---DIEGLIELIREARERKIPILGICLG   81 (192)
T ss_dssp             HHHHHHTTEEEEEEETTGGHHHH--------HH-HTTTSSEEEEECESSSTT---SHHHHHHHHHHHHHTTSEEEEETHH
T ss_pred             HHHHHHCCCeEEEEECCCchhhh--------hh-hhcCCCEEEECCcCCccc---cccccccccccccccceEEEEEeeh
Confidence            45677778888888765311000        00 11222211   6632221   1578889999999999999999999


Q ss_pred             HHHHHHHcC
Q 023800           84 LAVALGSWG   92 (277)
Q Consensus        84 ~~~~La~aG   92 (277)
                      -. +||.+-
T Consensus        82 ~Q-~la~~~   89 (192)
T PF00117_consen   82 HQ-ILAHAL   89 (192)
T ss_dssp             HH-HHHHHT
T ss_pred             hh-hhHHhc
Confidence            99 888863

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=84.54  E-value=3.7  Score=33.03  Aligned_cols=70  Identities=10%  Similarity=0.081  Sum_probs=39.2

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      ..+.|++.|+++.++..+.+  ..         +..+.+++..   ||. ........+.   +.+...+.++++.+||.
T Consensus        14 ~~~~l~~~G~~~~~~~~~~~--~~---------~~~~~~~dgvIl~Gg~-~~~~~~~~~~---~~~~~~~~~~PilGIC~   78 (181)
T cd01742          14 IARRVRELGVYSEILPNTTP--LE---------EIKLKNPKGIILSGGP-SSVYEEDAPR---VDPEIFELGVPVLGICY   78 (181)
T ss_pred             HHHHHHhcCceEEEecCCCC--hh---------hhcccCCCEEEECCCc-ccccccccch---hhHHHHhcCCCEEEEcH
Confidence            45677788888877775421  00         1122222222   552 2211111122   33444556999999999


Q ss_pred             hHHHHHHHc
Q 023800           83 FLAVALGSW   91 (277)
Q Consensus        83 g~~~~La~a   91 (277)
                      |.. +|+.+
T Consensus        79 G~Q-ll~~~   86 (181)
T cd01742          79 GMQ-LIAKA   86 (181)
T ss_pred             HHH-HHHHh
Confidence            999 89985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=84.48  E-value=1.6  Score=39.59  Aligned_cols=31  Identities=10%  Similarity=0.029  Sum_probs=27.0

Q ss_pred             ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+...++++++.+++++|.+||.|.. +|+.+
T Consensus       234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a  264 (360)
T PRK12564        234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA  264 (360)
T ss_pred             HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            36778899999988999999999999 77775

>PRK09065 glutamine amidotransferase; Provisional

Probab=84.19  E-value=1.3  Score=37.58  Aligned_cols=30  Identities=20%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ..+.+||++..+.+++|.+||-|.. +|+.+
T Consensus        75 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  104 (237)
T PRK09065         75 ERTADWLRQAAAAGMPLLGICYGHQ-LLAHA  104 (237)
T ss_pred             HHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence            5678999999999999999999999 88886

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=82.96  E-value=1.1  Score=36.93  Aligned_cols=29  Identities=17%  Similarity=0.191  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           62 VLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+.++++++.+++++|.+||.|.. +|+.+
T Consensus        60 ~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~   88 (199)
T PRK13181         60 GLDEALKEHVEKKQPVLGICLGMQ-LLFES   88 (199)
T ss_pred             ChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence            467889999999999999999999 89997

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=82.93  E-value=2.3  Score=34.97  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCC-ccc--hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACG-MPG--ATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG-~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ...+.|++.|+++.++...  ..+....++ |-|          |+ ...  +..+++ ..+.+.|++  ..|+++.+||
T Consensus        14 s~~~al~~~g~~~~~v~~~--~~l~~~D~l-IlP----------G~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC   77 (192)
T PRK13142         14 NVKRAIEHLGYEVVVSNTS--KIIDQAETI-ILP----------GVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC   77 (192)
T ss_pred             HHHHHHHHcCCCEEEEeCH--HHhccCCEE-EEC----------CCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence            4567788888888877533  233332222 222          33 211  112222 235677776  5689999999


Q ss_pred             hhHHHHHHHcC
Q 023800           82 VFLAVALGSWG   92 (277)
Q Consensus        82 ~g~~~~La~aG   92 (277)
                      .|-. +|++..
T Consensus        78 lGmQ-lL~~~~   87 (192)
T PRK13142         78 LGMQ-LMYEHS   87 (192)
T ss_pred             HHHH-HHhhhc
Confidence            9999 898876

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=82.69  E-value=1.5  Score=36.68  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=44.8

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCc--cccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADA--LVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~--~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      .+.|++.|+++.++..+.  +..        ++.  .+++.+..   ||...+   .+.....+|+++..+++++|.+||
T Consensus        17 ~~~l~~~G~~~~~~~~~~--~~~--------~~~~~~~~~~dgliisGGp~~~---~~~~~~~~~i~~~~~~~~PiLGIC   83 (214)
T PRK07765         17 VQYLGQLGVEAEVWRNDD--PRL--------ADEAAVAAQFDGVLLSPGPGTP---ERAGASIDMVRACAAAGTPLLGVC   83 (214)
T ss_pred             HHHHHHcCCcEEEEECCC--cCH--------HHHHHhhcCCCEEEECCCCCCh---hhcchHHHHHHHHHhCCCCEEEEc
Confidence            356777888888887653  110        010  01122211   663222   223456789999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      -|.. +|+.+
T Consensus        84 ~G~Q-lla~a   92 (214)
T PRK07765         84 LGHQ-AIGVA   92 (214)
T ss_pred             cCHH-HHHHH
Confidence            9999 78775

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=82.30  E-value=3.6  Score=40.86  Aligned_cols=31  Identities=10%  Similarity=0.096  Sum_probs=27.1

Q ss_pred             ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      +....+++++..+.++++.+||-|.. +|+.+
T Consensus       574 d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a  604 (717)
T TIGR01815       574 DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA  604 (717)
T ss_pred             hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence            34567889999999999999999999 89887

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=81.73  E-value=11  Score=31.40  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=61.8

Q ss_pred             CCeEEEEecCCCchhh---HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          160 SPQILVPIANGSEEME---AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e---~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      .++|+++=+-+.....   .--..++|+..|.+++-++.... +           ...+++. ..+-|+|+|.||.. ..
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~-----------~~~Ie~~-l~~~d~IyVgGGNT-F~   97 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-P-----------LAAIENK-LMKADIIYVGGGNT-FN   97 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-C-----------HHHHHHh-hhhccEEEECCchH-HH
Confidence            3578887654433222   23467788888888777665432 1           1222221 23579999999953 22


Q ss_pred             hh--hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          237 AF--AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       237 ~~--~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      -+  ...-.+.+.|++..++|++.++...|+. +-..
T Consensus        98 LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~-ia~p  133 (224)
T COG3340          98 LLQELKETGLDDIIRERVKAGTPYIGWSAGAN-IAGP  133 (224)
T ss_pred             HHHHHHHhCcHHHHHHHHHcCCceEEeccCce-eecC
Confidence            12  2344688899999999999999998887 4433

>PRK00758 GMP synthase subunit A; Validated

Probab=81.07  E-value=3.9  Score=33.13  Aligned_cols=27  Identities=11%  Similarity=-0.014  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ..+.+|++   +.+++|.+||.|.. +|+.+
T Consensus        57 ~~~~~~l~---~~~~PilGIC~G~Q-~L~~a   83 (184)
T PRK00758         57 GNCPEYLK---ELDVPILGICLGHQ-LIAKA   83 (184)
T ss_pred             cccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence            34566666   45899999999999 89987

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.37  E-value=16  Score=32.25  Aligned_cols=87  Identities=16%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             CCeEEEEecCCCch--hhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          160 SPQILVPIANGSEE--MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       160 ~~kV~ill~~g~~~--~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      ++||+++.-++-..  ..+....+.|++.|+++.+...... .    .+...    .... ....+|++++.||.+    
T Consensus         3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~----~~~~~----~~~~-~~~~~d~vi~~GGDG----   68 (305)
T PRK02645          3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-D----NPYPV----FLAS-ASELIDLAIVLGGDG----   68 (305)
T ss_pred             cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-h----ccccc----hhhc-cccCcCEEEEECCcH----
Confidence            46799998876433  2245567778889999877543321 1    01110    0111 123589999999964    


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEch-hh
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICA-SP  265 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~-G~  265 (277)
                           -+.+.++.+...++++.+|-. |.
T Consensus        69 -----T~l~~~~~~~~~~~pv~gin~~G~   92 (305)
T PRK02645         69 -----TVLAAARHLAPHDIPILSVNVGGH   92 (305)
T ss_pred             -----HHHHHHHHhccCCCCEEEEecCCc
Confidence                 234555555567899999987 54

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		9e-21
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		2e-19
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		7e-19
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		4e-14
3b36_A	192	Structure Of M26l Dj-1 Length = 192		1e-13
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		2e-13
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		2e-13
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		2e-13
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		2e-13
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		2e-13
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		2e-13
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		2e-13
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		5e-13
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		5e-13
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		5e-13
3b38_A	192	Structure Of A104v Dj-1 Length = 192		6e-13
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		2e-12
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		2e-12
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		3e-12
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		3e-12
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		3e-12
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		4e-12
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		4e-12
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		4e-12
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		8e-12
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		8e-12
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		2e-11

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 71/110 (64%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S +ILVP+A+GSEE E VII+D L RA   V  A+V DKL++  S  V L A+  ++  +
Sbjct: 9   SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
             ++D + LPGG+GGAQAFA S  L+ ++    +  +   AICA+PALV 
Sbjct: 69  AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVF 118

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 70/110 (63%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S +ILVP+A+GSEE E VII+D L RA   V  A+V DKL++  S  V L A+  ++  +
Sbjct: 9   SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
             ++D + LPGG+GGAQAFA S  L+ ++    +  +   AI A+PALV 
Sbjct: 69  AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVF 118

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    +  +C   VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61
Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +  +
Sbjct: 62  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S   LV +A G+EEME +I  D+LRRA   V VA +     +  S  V+++ D  + + A
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
              +D++VLPGGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+
Sbjct: 65  SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGV 118

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D+LRRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 116

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 116

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 2   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 62  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 112

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+        ICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALL 113

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+        ICA P  +L
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALL 116

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM  VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EE E VI +D+ RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EE E VI +D+ RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 2   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 62  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALL 112

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 2   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 62  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALL 112

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 6   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 66  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 116

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM+ VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEM  VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 3   SKRALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AI A P  +L
Sbjct: 63  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	1e-46
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	7e-42
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	1e-46
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	3e-45
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	1e-45
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	7e-41
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	2e-44
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	2e-40
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	8e-37
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	2e-33
2fex_A	188	Conserved hypothetical protein; structural genomic	7e-35
2fex_A	188	Conserved hypothetical protein; structural genomic	2e-24
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	4e-34
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	2e-15
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	3e-10
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	9e-33
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	2e-26
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	3e-32
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	2e-28
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	3e-28
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	3e-23
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-27
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-18
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	1e-25
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	2e-20
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	1e-20
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	1e-16
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-18
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-14
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	2e-16
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	1e-06
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-06
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-05
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	3e-06
1u9c_A	224	APC35852; structural genomics, protein structure i	7e-06
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	7e-06
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	5e-04
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	2e-05
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	2e-04

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  154 bits (391), Expect = 1e-46
 Identities = 57/119 (47%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK--LEILASCQVKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    L I  S  VKL+AD  + E
Sbjct: 2   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +  
Sbjct: 62  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFP 120

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  142 bits (359), Expect = 7e-42
 Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 35/186 (18%)

Query: 1   MEAVITIDVLRRSGADVVVASVE--KQLRVDACHGVKIVADALVSNCRDAC--------G 50
            EAV TID+L R G  V  ASV     L +    GVK++ADA +    D          G
Sbjct: 16  TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 75

Query: 51  MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------ 98
           + GA   ++S +L   VK+    GR+ AAIC   A  L    +                 
Sbjct: 76  IKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP 135

Query: 99  -----------DGKV--VTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEF 145
                      D +V  +T++GPGT ++F + +++ L G+ KA EV+   VM A   + +
Sbjct: 136 AEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYY 195

Query: 146 TIAEFN 151
              E +
Sbjct: 196 EQLEHH 201

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  154 bits (391), Expect = 1e-46
 Identities = 51/117 (43%), Positives = 73/117 (62%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S +ILVP+A+GSEEME VII+D L RA   V +A+V DKL++  S  V L A+  ++  +
Sbjct: 9   SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACS 68

Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
             ++D + LPGG+GGAQAFA S  L+ ++    +  +   AICA+PALV        
Sbjct: 69  AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFV 125

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  150 bits (382), Expect = 3e-45
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 33/179 (18%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           ME VI +D L R+G  V +A+V  +L+V    GV + A+  +  C            G+ 
Sbjct: 23  METVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVG 82

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
           GA    +S  L +++   +  G+L AAIC   A+         G +              
Sbjct: 83  GAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSE 142

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFT 146
                         ++T++GPGT +EF +A++  L G   A  V+   V+      E +
Sbjct: 143 RLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLHPQQLTELS 201

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  151 bits (383), Expect = 1e-45
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S   LV +A G+EEME +I  D+LRRA   V VA +     +  S  V+++ D  + + A
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64

Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
              +D++VLPGGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  
Sbjct: 65  SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVAS 120

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  138 bits (351), Expect = 7e-41
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 38/175 (21%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GMP 52
           ME +I  DVLRR+G  V VA +     V     V+I+ D  ++              G+ 
Sbjct: 19  MEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLA--VALGSWGLLKGLK------------ 98
           G+  + ES ++  +++ Q S G L AAIC   A    L   G+  G              
Sbjct: 79  GSNAMGESSLVGDLLRSQESGGGLIAAIC---AAPTVLAKHGVASGKSLTSYPSMKPQLV 135

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRAN 140
                        DG ++T+RGPGT  EF + + E+L GK K  EV+   ++  N
Sbjct: 136 NNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAYN 190

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  148 bits (375), Expect = 2e-44
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)

Query: 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA 218
            S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A
Sbjct: 2   ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDA 61

Query: 219 AKLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            K   YD++VLPGG  GAQ  ++S  +  +LK+Q+        ICA P   L  H +  
Sbjct: 62  KKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGF 119

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  138 bits (349), Expect = 2e-40
 Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 40/175 (22%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC---------GM 51
           ME VI +DV+RR+G  V VA +  +  V     V I  DA + + +            G 
Sbjct: 17  METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLA--VALGSWGLLKGLK----------- 98
            GA NL ES  ++ I+K+Q +   L A IC   A   AL +  +  G K           
Sbjct: 77  LGAQNLSESAAVKEILKEQENRKGLIATIC---AGPTALLAHEIGFGSKVTTHPLAKDKM 133

Query: 99  ---------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
                          DG ++T+RGPGT  EF +A+VE L GK  A +V    V++
Sbjct: 134 MNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  128 bits (324), Expect = 8e-37
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDE- 217
            ++ + +A+G++E+E      I +RA+  +    V +     +  S  V++ A+    E 
Sbjct: 5   VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEI 64

Query: 218 ----AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ-KESNRPYGAICASPALVLEPH 272
                    YD+ ++PGG  GA+  + +  +  ++K+  K+ N+  G ICA    +    
Sbjct: 65  PSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAKT 122

Query: 273 GLLK 276
             L 
Sbjct: 123 SGLP 126

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  119 bits (301), Expect = 2e-33
 Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 43/175 (24%)

Query: 1   MEAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDAC--------- 49
           +E      + +R+   +    V   K   V     V++ A+        A          
Sbjct: 18  IEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIA 77

Query: 50  ----GMPGATNLKESEVLESIVKKQ-ASDGRLYAAICVFLAVALGSWGLLKGLK------ 98
               G  GA  L  +  ++ +VK+      +    IC            L   +      
Sbjct: 78  IIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICA--GTLTAKTSGLPNKQITGHPS 135

Query: 99  -------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGA 134
                              +  ++T++GPGT M F + L+EQ+  K K + V  +
Sbjct: 136 VRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKS 190

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  123 bits (310), Expect = 7e-35
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK 220
            +I + +A    + E  ++    R      +V +  D + + +   +K+  D   D    
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDP 61

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
           +  D +V+PGGL   +  A    L  ++K+ ++ +R    ICA+    L   G+L 
Sbjct: 62  VDIDALVIPGGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLN 114

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score = 95.9 bits (239), Expect = 2e-24
 Identities = 36/169 (21%), Positives = 54/169 (31%), Gaps = 43/169 (25%)

Query: 1   MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--------GM 51
            E  +     R   G ++V A+ +    V +  G+K+  D                  G+
Sbjct: 15  WEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------- 98
                   +  L  +VK+     RL A IC   A ALG  G+L  +              
Sbjct: 74  SWEKGT--AADLGGLVKRFRDRDRLVAGICA-AASALGGTGVLNDVAHTGNALASHKAYP 130

Query: 99  ----------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
                           DG VVT  G   P+ F V +++ L   G   E 
Sbjct: 131 AYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEA 178

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  126 bits (318), Expect = 4e-34
 Identities = 55/342 (16%), Positives = 97/342 (28%), Gaps = 99/342 (28%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQ---------------LRVDACHGVKIVADALVSNC 45
            E ++    L+  G  V      K+                      G     +A     
Sbjct: 26  YEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEV 85

Query: 46  R----DACGMPG---ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98
                D   +PG      L  +  +  +VK+ +  G+  A+IC    + L +   + G K
Sbjct: 86  DLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASIC-HGQLILAAADTVNGRK 144

Query: 99  -----------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKAD 129
                                        DG ++T        EF+   V+ L GK    
Sbjct: 145 CTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKIT-- 202

Query: 130 EVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKAN 189
                                         + +IL    +  E+ E  +    L+     
Sbjct: 203 ----------------------------GANKRILFLCGDYMEDYEVKVPFQSLQALGCQ 234

Query: 190 VVVASVADKLEILASCQV---------------KLVADMLIDEAAKLSYDLIVLPGGLGG 234
           V       K        +                       D+    SYD +V+PGG   
Sbjct: 235 VDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGG-RA 293

Query: 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            +  A ++ ++N++K+   S +P  +IC     +L   G+LK
Sbjct: 294 PEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLK 334

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 17/133 (12%)

Query: 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV----------- 207
           NS  +L+   +  E+ E ++    L+     V       K        V           
Sbjct: 11  NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFE 70

Query: 208 ----KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263
                   +   DE     YD +V+PGG    +  A +  +V ++K+   S +P  +IC 
Sbjct: 71  SRGHNFTLNATFDEVDLSKYDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICH 129

Query: 264 SPALVLEPHGLLK 276
              L+L     + 
Sbjct: 130 GQ-LILAAADTVN 141

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 34/173 (19%), Positives = 50/173 (28%), Gaps = 52/173 (30%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDAC---------------HGVKIVADALVSNC 45
            E  +    L+  G  V     EK+                      G          + 
Sbjct: 219 YEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDL 278

Query: 46  R----DACGMPG---ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98
                DA  +PG      L  +E + +IVK+  +  +  A+IC      L + G+LKG K
Sbjct: 279 VSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASIC-HGQQILAAAGVLKGRK 337

Query: 99  -----------------------------DGKVVTTRGPGTPMEFVVALVEQL 122
                                        DG +VT        EFV  L+  L
Sbjct: 338 CTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALL 390

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  117 bits (295), Expect = 9e-33
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           + V   N          ++       +  V +V+D  EI  +  + L+ D +I       
Sbjct: 5   VAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHE 64

Query: 223 --YDLIVLPGG-----LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275
             +D +V   G              +  L+ ++K   E  +     CA   ++ +  G+ 
Sbjct: 65  DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFDFTGIT 123

Query: 276 K 276
           K
Sbjct: 124 K 124

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  101 bits (253), Expect = 2e-26
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 43/162 (26%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR------DA------ 48
                 ++    +G    V +V     +    G+ ++ D +++N +      DA      
Sbjct: 16  CGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG 75

Query: 49  ---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLA--VALGSWGLLKGLK----- 98
                     N   +  L  ++K     G++    C   A  +     G+ KG K     
Sbjct: 76  DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHC---AGAMMFDFTGITKGKKVAVHP 132

Query: 99  ------------------DGKVVTTRGPGTPMEFVVALVEQL 122
                             DG   T +   T    +  ++E L
Sbjct: 133 LAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL 174

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  117 bits (296), Expect = 3e-32
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 142 GDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEI 201
           G +      +     F    ++ + + +   +++  ++ D+L R   +  V  +  K E 
Sbjct: 2   GSDKIHHHHHHENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEH 61

Query: 202 LASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAI 261
            +   + +  D  + E      D++++  G  G  A  + +  ++ LK    S +  G+I
Sbjct: 62  HSQLGMTVKTDGHVSEVK--EQDVVLITSGYRGIPAALQDENFMSALKLD-PSRQLIGSI 118

Query: 262 CASPALVLEPHGLLK 276
           CA    VL   GLLK
Sbjct: 119 CAGS-FVLHELGLLK 132

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  107 bits (270), Expect = 2e-28
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGA 54
           ++  +  D+L R+     V  +  +    +  G+ +  D  VS  ++        G  G 
Sbjct: 34  VDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGI 93

Query: 55  TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK---------------- 98
               + E   S +K   S  +L  +IC   +  L   GLLKG K                
Sbjct: 94  PAALQDENFMSALKLDPS-RQLIGSICA-GSFVLHELGLLKGKKLTTNPDAKAVLQGMGG 151

Query: 99  ---------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
                    +G + T  G  + +  V  L E+L+   K  ++
Sbjct: 152 DVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQI 193

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  110 bits (276), Expect = 3e-28
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 154 QWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-CQVKLVAD 212
                   ++ + I    E+ E +I  + L++A   VVV       +      ++   AD
Sbjct: 4   NHNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQAD 63

Query: 213 MLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272
               EA    +D +V+PGG+       ++   V  +++  E  +   A+C  P  VL   
Sbjct: 64  GTTTEAIASEFDAVVIPGGM-APDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEG 121

Query: 273 GLLK 276
            LL+
Sbjct: 122 DLLR 125

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score = 96.8 bits (241), Expect = 3e-23
 Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 41/200 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHG-VKIVADALVSNCR----DACGMPG-- 53
            E +I  + L+++G +VVV       +     G +   AD   +       DA  +PG  
Sbjct: 24  TEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM 83

Query: 54  -ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
               ++ +      V++    G+L AA+C      L    LL+G +              
Sbjct: 84  APDKMRRNPNTVRFVQEAMEQGKLVAAVC-HGPQVLIEGDLLRGKQATGFIAISKDMMNA 142

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      DG ++T+R PG    F  A++ +L   GK   +   +   A   + + +
Sbjct: 143 GADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDEKDRNA---EWWKL 199

Query: 148 AEFNPVQWTFDNSPQILVPI 167
           A+     W       I+  +
Sbjct: 200 AD----AWGGSTKGDIVRGL 215

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  104 bits (261), Expect = 2e-27
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAK------ANVVVASVA-DKLEILASCQVKLVADMLI 215
             + + N   + E   +I  L   +      A + V +V  +K  I     +++  D+ +
Sbjct: 8   AFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISL 67

Query: 216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275
           DE    S DL++LPGG   ++     + ++  + +  +      AIC +    L   G L
Sbjct: 68  DECTLESKDLLILPGGTTWSEEIH--QPILERIGQALKIGTIVAAICGAT-DALANMGYL 124

Query: 276 K 276
            
Sbjct: 125 D 125

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 51/199 (25%)

Query: 1   MEAVITIDVLRRS--------GADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC--- 49
            E    I  L              V+     K++ +    G++I  D  +  C       
Sbjct: 19  WEYGYLIAELNSGRYFKKDLAPLKVITVGANKEM-ITTMGGLRIKPDISLDECTLESKDL 77

Query: 50  -----GMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------ 98
                G   +  + +  +LE  + +    G + AAIC     AL + G L   K      
Sbjct: 78  LILPGGTTWSEEIHQ-PILE-RIGQALKIGTIVAAICG-ATDALANMGYLDTRKHTSNNL 134

Query: 99  -----------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGAR 135
                                  D  +VT  G   P+EF + +++++      D +    
Sbjct: 135 EYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI-DVFTLDALHSWY 192

Query: 136 VMRANHGDEFTIAEFNPVQ 154
            +   H  E+     N + 
Sbjct: 193 NLNKTHKPEYFFQLMNSIN 211

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score = 99.4 bits (248), Expect = 1e-25
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 162 QILVPIANGSEEMEAVIIIDIL-RRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK 220
           + L  I +   + E V +   L +R   +V   S+     + +    K   D +I     
Sbjct: 5   KALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP--IVSSIGGFKTSVDYIIGLEPA 62

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            +++L+V+ GG   +     +KKL++ +K   + N P  AIC +    L  +GLL 
Sbjct: 63  -NFNLLVMIGGDSWSN---DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLN 113

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score = 85.9 bits (213), Expect = 2e-20
 Identities = 35/186 (18%), Positives = 53/186 (28%), Gaps = 38/186 (20%)

Query: 1   MEAVITIDVL-RRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR---DACGMPGA-T 55
            E V     L +R    V   S++    V +  G K   D ++       +   M G  +
Sbjct: 17  WEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLEPANFNLLVMIGGDS 74

Query: 56  NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------- 98
              +++ L   VK         AAIC      L   GLL                     
Sbjct: 75  WSNDNKKLLHFVKTAFQKNIPIAAICG-AVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKP 133

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTI 147
                      D  +VT  G   P+EF   ++E +      + +     M       F  
Sbjct: 134 ISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMI-DFDTPENIEKMMYMNRYGFYHFCD 191

Query: 148 AEFNPV 153
              NP 
Sbjct: 192 KYGNPF 197

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score = 86.1 bits (214), Expect = 1e-20
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----CQVKLVADMLIDE 217
           I +  A+G EE+E       +  A     + S+    EI +       Q K   D ++ E
Sbjct: 12  IAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSE 70

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
                YD ++LPGG          +  +  ++   ++ +P  AIC  P   L   G+ +
Sbjct: 71  VQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQ 128

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 44/171 (25%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACH----GVKIVADALVSNCR----DAC--- 49
           +E       +  +G    + S+E               K   D +VS  +    D     
Sbjct: 23  IELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLP 82

Query: 50  -GMPGATNLKESEVLESIVKKQASDGRLYAAIC---VFLAVALGSWGLLKGLK------- 98
            G      L+  E     V+     G+  AAIC     L+      G+ +GLK       
Sbjct: 83  GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET----GIAQGLKMTSWSSL 138

Query: 99  ------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
                             D  VVT+R P     F   +VE+      +   
Sbjct: 139 KRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRR 189

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLS 222
           +L   A+G E++E +  +  ++     V VAS     +I       +  D+  +E     
Sbjct: 5   VLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDE 63

Query: 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
           +D +VLPGG    +    ++K V + ++  E ++P  +IC  P  +L    +LK
Sbjct: 64  FDALVLPGGK-APEIVRLNEKAVMITRRMFEDDKPVASICHGP-QILISAKVLK 115

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score = 68.3 bits (168), Expect = 2e-14
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 34/155 (21%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPG--- 53
           +E +  +  ++  G +V VAS ++  ++   HG  +  D           DA  +PG   
Sbjct: 16  LELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA 74

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
              ++ +E    I ++   D +  A+IC      L S  +LKG +               
Sbjct: 75  PEIVRLNEKAVMITRRMFEDDKPVASIC-HGPQILISAKVLKGRRGTSTITIRDDVINAG 133

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQLY 123
                     DG  V++R PG    ++   V+ L+
Sbjct: 134 AEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLLH 168

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 3/115 (2%)

Query: 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-CQVKLVADMLIDEAAKL 221
           I V I +  E+ E     D  R+A   V+         +     +  +  D  IDE    
Sbjct: 26  IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPA 85

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            +D ++LPGG           + V   +    S +P  AIC  P  +L    +++
Sbjct: 86  EFDALLLPGG-HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIR 138

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 41/161 (25%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHG-VKIVADALVSNCR----DACGMPG-- 53
            E     D  R++G +V+    +    V    G   +  D  +        DA  +PG  
Sbjct: 37  SEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 96

Query: 54  -ATNLKESEVLESIVKKQASDGRLYAAIC---VFLAVALGSWGLLKGLK----------- 98
               L+      +  +   + G+   AIC     L  A     +++G K           
Sbjct: 97  SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA----DVIRGRKLTAVKPIIIDV 152

Query: 99  ---------------DGKVVTTRGPGTPMEFVVALVEQLYG 124
                            ++VT+R P     F    +  L  
Sbjct: 153 KNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 45/295 (15%), Positives = 80/295 (27%), Gaps = 79/295 (26%)

Query: 7   IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESI 66
              L     ++V   VE+ LR++     K +   + +  R     P       + +    
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQ----PSM----MTRMYIEQ 115

Query: 67  VKKQASDGRLYAAICVF---LAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY 123
             +  +D +++A   V      + L     L  L+  K V   G                
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVL-------------- 159

Query: 124 GKGKADEVSGARVMRANHGDEFTIAEFNPVQW-TF--DNSP-QILVPIAN---------- 169
           G GK        V  +    +        + W      NSP  +L  +            
Sbjct: 160 GSGKT--WVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 170 -GSEEMEAVI-----IIDILRR-------AKANVVVASVADKLEILA----SCQV----- 207
             S+    +      I   LRR           +V+ +V +  +       SC++     
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTR 273

Query: 208 -KLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKL-VNMLKKQKESNRP 257
            K V D L          L      L   +      K        L ++  +  P
Sbjct: 274 FKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 27/126 (21%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVAS----------------VADKLEILASCQVKLVADM 213
           GSE  EAV+ +  + R+ A  V  +                + +   +L         ++
Sbjct: 21  GSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEI 80

Query: 214 L-IDEAAKLSYDLIVLPGGLGGAQAFAKS----------KKLVNMLKKQKESNRPYGAIC 262
             + +A     D +++PGG G A+  +            ++L  + +   ++ +P G +C
Sbjct: 81  RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMC 140

Query: 263 ASPALV 268
            +PA++
Sbjct: 141 IAPAML 146

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 41/172 (23%)

Query: 1   MEAVITIDVL-RRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC-------GMP 52
           M+ V    +     GA + + +      V +  G+ IV  A    C           G  
Sbjct: 37  MDLVGPHCMFGSLMGAKIYIVAKSLDP-VTSDAGLAIVPTATFGTCPRDLTVLFAPGGTD 95

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAIC--VFLAVALGSWGLLKGLK------------ 98
           G           + +  + +  +   ++C    +   LG+ GLLKG K            
Sbjct: 96  GTLAAASDAETLAFMADRGARAKYITSVCSGSLI---LGAAGLLKGYKATSHWSCRDALA 152

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVM 137
                        D   +T  G    ++F +++V +L  +  A+      + 
Sbjct: 153 GFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECA--QLMS 202

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAK 220
           QI + +  G   M+ V    +        + + +      + +   + +V         +
Sbjct: 25  QIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVA-KSLDPVTSDAGLAIVPTATFGTCPR 83

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
               ++  PGG  G  A A   + +  +  +    +   ++C S +L+L   GLLK
Sbjct: 84  -DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVC-SGSLILGAAGLLK 137

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 28/135 (20%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVAS----------------VADKLEILASCQVKLVADM 213
           GSE  EAV+++  L R   N    +                V +   IL          +
Sbjct: 38  GSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSV 97

Query: 214 L-IDEAAKLSYDLIVLPGGLGGAQAFAKS-----------KKLVNMLKKQKESNRPYGAI 261
             I++     +D++V+PGG G A+ F+              +  N +++   + +P GA+
Sbjct: 98  YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAV 157

Query: 262 CASPALVLEPHGLLK 276
           C SPA+V+     + 
Sbjct: 158 CISPAVVVALLKDIA 172

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 168 ANGSEEMEAVIIIDILRRAKANVVVAS------------VADKLEILASCQVKLVADMLI 215
             G    E  +   + +    +V VAS            + +K    A  +  L     +
Sbjct: 23  KTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 82

Query: 216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266
            +     +D I LPGG G    F  ++ L  +L++  E  R   A+C  P+
Sbjct: 83  SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS 133

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 51/178 (28%)

Query: 1   MEAVITIDVLRR--SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPG 53
           ++    +++        ++   S +  L V++   V++       +          G  G
Sbjct: 18  LDVFGPVEIFGNLQDDFELNFISSDGGL-VESSQKVRVETSLYTRDENIEKILFVPGGSG 76

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAIC--VFLAVALGSWGLLKGLKDGKVVTT------ 105
                  +   + +     + +   ++C    L   L   G+L    +GK  TT      
Sbjct: 77  TREKVNDDNFINFIGNMVKESKYIISVCTGSAL---LSKAGIL----NGKRATTNKRSFK 129

Query: 106 ----RGPGTPME----FVV------------------ALVEQLYGKGKADEVSGARVM 137
               +           +V                     +E L GK KA E+  +R +
Sbjct: 130 WVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEI--SRSI 185

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 16/116 (13%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE-ILASCQVKLVADMLIDEAAK 220
           +I V + N  E ++    ++I    + +  +  ++     + +S +V++   +   +   
Sbjct: 6   RIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENI 65

Query: 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
               ++ +PGG  G +        +N +    + ++   ++C + + +L   G+L 
Sbjct: 66  E--KILFVPGGS-GTREKVNDDNFINFIGNMVKESKYIISVC-TGSALLSKAGILN 117

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 39/170 (22%)

Query: 1   MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGA 54
           ++     DVL       V +   E    V A  G+ + A    ++C         G  G 
Sbjct: 19  LDLTGPHDVLASLPDVQVHLIWKEPGP-VVASSGLVLQATTSFADCPPLDVICIPGGTGV 77

Query: 55  TNLKESEVLESIVKKQASDGRLYAAIC--VFLAVALGSWGLLKGLK-------------- 98
             L E     + +++QA+  R   ++     +   LG+ GLL+G +              
Sbjct: 78  GALMEDPQALAFIRQQAARARYVTSVSTGSLV---LGAAGLLQGKRATTHWAYHELLAPL 134

Query: 99  -----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVM 137
                      DG ++T  G    ++F + L  +L+    A  V     +
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV--QLQL 182

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 211 ADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
           AD++    A   Y  I +PGG G      +S+ +   L+   +++R   ++C  PA  L
Sbjct: 134 ADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFL 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	99.96
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	99.95
3er6_A	209	Putative transcriptional regulator protein; struct	99.95
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	99.95
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	99.95
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	99.95
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	99.95
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	99.95
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	99.95
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	99.94
3gra_A	202	Transcriptional regulator, ARAC family; transcript	99.94
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	99.93
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	99.93
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	99.93
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.92
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	99.92
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.92
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	99.92
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	99.92
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	99.91
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	99.91
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.91
2fex_A	188	Conserved hypothetical protein; structural genomic	99.91
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	99.91
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	99.91
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	99.91
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	99.9
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	99.9
3gra_A	202	Transcriptional regulator, ARAC family; transcript	99.9
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	99.9
3er6_A	209	Putative transcriptional regulator protein; struct	99.9
2fex_A	188	Conserved hypothetical protein; structural genomic	99.89
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	99.89
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	99.89
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.89
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.88
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.88
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.87
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	99.87
1u9c_A	224	APC35852; structural genomics, protein structure i	99.87
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.87
1u9c_A	224	APC35852; structural genomics, protein structure i	99.86
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.86
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.85
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.84
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	99.84
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.84
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.84
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.83
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.83
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.83
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.82
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.82
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.81
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.8
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.78
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.74
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.69
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.65
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.64
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.44
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.22
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.21
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.01
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.46
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.41
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.37
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.36
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.31
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	98.31
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.28
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	98.03
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.0
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	97.99
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.98
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.92
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.85
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.81
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.7
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.67
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.54
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.31
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.18
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.15
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	97.03
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	96.99
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.9
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.87
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	96.85
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	96.83
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	96.74
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	96.58
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.47
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	96.26
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	96.17
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	96.01
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	95.71
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	95.6
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	95.53
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	95.13
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.07
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	95.06
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	95.0
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	94.9
3m3p_A	250	Glutamine amido transferase; structural genomics,	94.77
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	94.51
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	94.31
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	94.06
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	93.9
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	93.51
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	93.39
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	93.24
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	92.74
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	92.6
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	92.6
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	90.13
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	89.71
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	88.75
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	88.11
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	87.5
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	86.75
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	85.08
2a9v_A	212	GMP synthase; structural genomics, joint center fo	82.5
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	82.43

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=3.5e-45  Score=333.07  Aligned_cols=242  Identities=22%  Similarity=0.295  Sum_probs=216.5

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc---------------eeecCCCCEEecCcccccccc---C-----CCccchhcc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL---------------RVDACHGVKIVADALVSNCRD---A-----CGMPGATNL   57 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~---------------~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~   57 (277)
                      +|+..|+++|+++||+|+++|++++.               .++++.|+.+.+|..+++++.   +     ||. +...+
T Consensus        26 ~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~  104 (396)
T 3uk7_A           26 YEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGR-APEYL  104 (396)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEEEECCCc-chhhc
Confidence            38899999999999999999998521               356778999999999998742   2     774 56667


Q ss_pred             ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCeEcCCCC
Q 023800           58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGP  108 (277)
Q Consensus        58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~  108 (277)
                      ..++.+.+||+++++++++|++||+|++ +|+++|||+||+                             |||+|||+|+
T Consensus       105 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~  183 (396)
T 3uk7_A          105 ALTASVVELVKEFSRSGKPIASICHGQL-ILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATY  183 (396)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEETTTHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSG
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECchHH-HHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcceEecCCEEEecCc
Confidence            8899999999999999999999999999 999999999998                             8999999999


Q ss_pred             CCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCC
Q 023800          109 GTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKA  188 (277)
Q Consensus       109 ~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~  188 (277)
                      +++++|++++++++.|++.                              .+++||+|+++|||++.|+..|+++|+++|+
T Consensus       184 ~~~~d~al~li~~l~g~~~------------------------------~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~  233 (396)
T 3uk7_A          184 EGHPEFIQLFVKALGGKIT------------------------------GANKRILFLCGDYMEDYEVKVPFQSLQALGC  233 (396)
T ss_dssp             GGHHHHHHHHHHHTTCEEE------------------------------CCCCEEEEECCTTEEHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHhccch------------------------------hccceEEEEecCCCcchhHHHHHHHHHHCCC
Confidence            9999999999999999742                              1347999999999999999999999999999


Q ss_pred             eEEEEeeCCCc---------------eEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHH
Q 023800          189 NVVVASVADKL---------------EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKE  253 (277)
Q Consensus       189 ~v~~vs~~~~~---------------~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~  253 (277)
                      +++++|+++++               .++++.|..+.++..++++++.+||+|+||||. ....+..++++.+||+++++
T Consensus       234 ~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~-~~~~~~~~~~~~~~l~~~~~  312 (396)
T 3uk7_A          234 QVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGR-APEYLALNEHVLNIVKEFMN  312 (396)
T ss_dssp             EEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCc-chhhhccCHHHHHHHHHHHH
Confidence            99999999862               145778999999999999877889999999997 45667889999999999999


Q ss_pred             cCCcEEEEchhhHHhhhhCCCCC
Q 023800          254 SNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       254 ~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ++++|++||+|++ +||++|||+
T Consensus       313 ~~~~i~aiC~g~~-~La~aGlL~  334 (396)
T 3uk7_A          313 SEKPVASICHGQQ-ILAAAGVLK  334 (396)
T ss_dssp             TTCCEEEEGGGHH-HHHHTTTTT
T ss_pred             CCCEEEEEchHHH-HHHHcCCcC
Confidence            9999999999999 999999997

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=99.96  E-value=7.1e-29  Score=203.54  Aligned_cols=138  Identities=35%  Similarity=0.579  Sum_probs=127.5

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|+..|+++|+++||+++++|++++.+|++++|+.+.+|..+++++.   +     ||.++...++.++.+++||+++++
T Consensus        19 ~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~   98 (190)
T 4e08_A           19 MEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQES   98 (190)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHH
Confidence            37899999999999999999998645899999999999999998752   2     775456667889999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhH
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~  127 (277)
                      ++++|++||+|++ +|+++|||+||+                         |||+|||+|+++++||++++|+++.|++.
T Consensus        99 ~~k~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~d~al~li~~~~g~~~  177 (190)
T 4e08_A           99 GGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEK  177 (190)
T ss_dssp             TTCEEEEETTTHH-HHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHHHHHHHHHHHHHCHHH
T ss_pred             CCCEEEEECHHHH-HHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999 999999999998                         99999999999999999999999999999


Q ss_pred             HHHHhhcccccc
Q 023800          128 ADEVSGARVMRA  139 (277)
Q Consensus       128 a~~v~~~~~~~~  139 (277)
                      |+++++.|++++
T Consensus       178 a~~va~~l~~~~  189 (190)
T 4e08_A          178 VQEVAKGLLVAY  189 (190)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHHHhhCccc
Confidence            999999999986

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=99.95  E-value=3.2e-28  Score=196.91  Aligned_cols=121  Identities=20%  Similarity=0.232  Sum_probs=113.4

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|+++|+++|+++||+|+++|+++ .++++++|+.+.+|..+++++..        ||+ ++..++.++.+++|++++++
T Consensus        22 ~E~~~p~~~l~~ag~~V~~~s~~~-~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l~~~~~~~~~l~~~~~   99 (177)
T 4hcj_A           22 EEYFESKKIFESAGYKTKVSSTFI-GTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITLWDDWRTQGLAKLFLD   99 (177)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSS-EEEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGGTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCC-CeEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHHhhCHHHHHHHHHHHH
Confidence            489999999999999999999997 69999999999999999987532        884 67888999999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                      ++|+|+|||+|++ +|+++|||+||+                         |||+|||+||+++++|++++++.|.+
T Consensus       100 ~~k~iaaIC~g~~-~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          100 NQKIVAGIGSGVV-IMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             TTCEEEEETTHHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             hCCEEEEecccHH-HHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999 999999999998                         99999999999999999999999875

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=99.95  E-value=2.9e-28  Score=202.79  Aligned_cols=142  Identities=16%  Similarity=0.149  Sum_probs=122.2

Q ss_pred             CchhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccc-hhccccChHHHHH
Q 023800            1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPG-ATNLKESEVLESI   66 (277)
Q Consensus         1 ~E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~-~~~~~~~~~~~~~   66 (277)
                      +|+..|+++|++++       |+|.++|.++ .+|++++|+.+.+|..+++++..      ||... ...+++++.+++|
T Consensus        22 ~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~  100 (209)
T 3er6_A           22 ASIISSLEILETAAEFAEFQGFMTHVVTPNN-RPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDW  100 (209)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCEEEEEECTTS-SCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHHHHGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC-CceecCCCeEEeCCcCccccCCCCEEEECCCCCchhhhccCCHHHHHH
Confidence            37889999999874       9999999997 68999999999999999887543      66422 2224679999999


Q ss_pred             HHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHH
Q 023800           67 VKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVAL  118 (277)
Q Consensus        67 l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~l  118 (277)
                      |++++++|++|++||+|++ +||++|||+||+                            |||+|||+|+++++||++++
T Consensus       101 l~~~~~~g~~iaaIC~G~~-~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~~a~~dlal~l  179 (209)
T 3er6_A          101 IRELHLKGSKIVAIDTGIF-VVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVMLEI  179 (209)
T ss_dssp             HHHHHHTTCEEEEETTHHH-HHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTEEEECCSSCCHHHHHHH
T ss_pred             HHHHHhcCCEEEEEcHHHH-HHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCEEECCcHHHHHHHHHHH
Confidence            9999999999999999999 999999999998                            99999999999999999999


Q ss_pred             HHHhcChhHHHHHhhcccccccCCCc
Q 023800          119 VEQLYGKGKADEVSGARVMRANHGDE  144 (277)
Q Consensus       119 i~~l~g~~~a~~v~~~~~~~~~~~~~  144 (277)
                      |+++.|++.|+++++.|++++.++-+
T Consensus       180 i~~~~G~~~A~~va~~l~~~~~~~~~  205 (209)
T 3er6_A          180 VEEYFGKHTRNLGNQFLSTIESEGHH  205 (209)
T ss_dssp             HHHHHCHHHHHHHHHHTTC-------
T ss_pred             HHHHhCHHHHHHHHHHhccCcccccc
Confidence            99999999999999999999877644

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=99.95  E-value=4.2e-28  Score=202.04  Aligned_cols=138  Identities=17%  Similarity=0.292  Sum_probs=127.5

Q ss_pred             CchhhHHHHHHhC--CCeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRS--GADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~--~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|+..|+++|+++  +|+|.++|+++ .+|++++|+.+.+|..+++.+..      ||. +...+..++++++||+++++
T Consensus        18 ~e~~~~~~~l~~a~~~~~v~~vs~~~-~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~-~~~~~~~~~~~~~~l~~~~~   95 (211)
T 3mgk_A           18 LDVFGPVEIFGNLQDDFELNFISSDG-GLVESSQKVRVETSLYTRDENIEKILFVPGGS-GTREKVNDDNFINFIGNMVK   95 (211)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEEECSSC-EEEECTTCCEEEEBCCCCCSSSEEEEEECCST-HHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCceEEEEEECCC-CeEecCCCcEEEeccchhhCCCCCEEEECCCc-chhhhcCCHHHHHHHHHHHH
Confidence            3788999999998  59999999997 68999999999999999887632      774 66667789999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                      ++++|++||+|++ +|+++|||+||+                            |||+|||+|+++++||++++|+++.|
T Consensus        96 ~~k~iaaiC~G~~-~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G  174 (211)
T 3mgk_A           96 ESKYIISVCTGSA-LLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIG  174 (211)
T ss_dssp             HCSEEEECTTHHH-HHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECSHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEchHHH-HHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCCHHHHHHHHHHHHHHHhC
Confidence            9999999999999 999999999998                            99999999999999999999999999


Q ss_pred             hhHHHHHhhcccccccC
Q 023800          125 KGKADEVSGARVMRANH  141 (277)
Q Consensus       125 ~~~a~~v~~~~~~~~~~  141 (277)
                      ++.|+++++.|++++.+
T Consensus       175 ~~~A~~va~~l~~~~~r  191 (211)
T 3mgk_A          175 KEKALEISRSIEYFWNE  191 (211)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHhcEECCcC
Confidence            99999999999999765

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=99.95  E-value=7.7e-28  Score=203.07  Aligned_cols=138  Identities=23%  Similarity=0.320  Sum_probs=127.8

Q ss_pred             CchhhHHHHHHh-CCCeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHHHHhC
Q 023800            1 MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQASD   73 (277)
Q Consensus         1 ~E~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (277)
                      +|+..|+++|++ ++|+|+++|+++ .+|++++|+.+.+|..+++++..      || .+...+..++.+++||++++++
T Consensus        19 ~e~~~p~evl~~~~~~~v~~vs~~~-~~V~~~~G~~v~~d~~l~~~~~~D~livpGG-~g~~~~~~~~~l~~~lr~~~~~   96 (231)
T 3noq_A           19 LDLTGPHDVLASLPDVQVHLIWKEP-GPVVASSGLVLQATTSFADCPPLDVICIPGG-TGVGALMEDPQALAFIRQQAAR   96 (231)
T ss_dssp             HHHHHHHHHHTTSTTEEEEEEESSS-EEEECTTSCEEEECEETTTCCCCSEEEECCS-TTHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCEEEEEECCC-CcEEcCCCCEEecccChhHCCcCCEEEECCC-CChhhhccCHHHHHHHHHHHhc
Confidence            378899999999 799999999997 68999999999999999887543      77 4666678899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhHH
Q 023800           74 GRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKA  128 (277)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~a  128 (277)
                      +++|++||+|++ +|+++|||+||+                         |||+|||+|+++++||++++|+++.|++.|
T Consensus        97 g~~v~aiC~G~~-~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~~~A  175 (231)
T 3noq_A           97 ARYVTSVSTGSL-VLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA  175 (231)
T ss_dssp             CSEEEEETTHHH-HHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHHHHHHHHHHHHSCHHHH
T ss_pred             CCEEEEECHHHH-HHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHHHHHHHHHHHHcCHHHH
Confidence            999999999999 999999999998                         899999999999999999999999999999


Q ss_pred             HHHhhcccccccC
Q 023800          129 DEVSGARVMRANH  141 (277)
Q Consensus       129 ~~v~~~~~~~~~~  141 (277)
                      +++++.|+|++.+
T Consensus       176 ~~va~~l~~~~~~  188 (231)
T 3noq_A          176 QRVQLQLEYAPAP  188 (231)
T ss_dssp             HHHHHHTTCCCCC
T ss_pred             HHHHHhceeCCCC
Confidence            9999999999743

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=99.95  E-value=3.8e-28  Score=201.98  Aligned_cols=139  Identities=30%  Similarity=0.518  Sum_probs=126.3

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|+..|+++|+++||+|+++|+++..+|++++|+.+.+|..+++++.   +     ||.++.+.+..++.+++||+++++
T Consensus        23 ~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~  102 (208)
T 3ot1_A           23 METVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQ  102 (208)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHH
Confidence            37899999999999999999998535899999999999999998742   2     775456667899999999999999


Q ss_pred             CCCEEEEEchhH-HHHHHHcCCCCCCC-----------------------C--CCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           73 DGRLYAAICVFL-AVALGSWGLLKGLK-----------------------D--GKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        73 ~g~~i~aiC~g~-~~~La~aGll~g~~-----------------------d--g~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                      ++|+|++||+|+ + +|+++|||+||+                       |  ||+|||+|+++++||++++|+++.|++
T Consensus       103 ~gk~i~aiC~G~a~-~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~  181 (208)
T 3ot1_A          103 QGKLVAAICATPAL-VFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVE  181 (208)
T ss_dssp             TTCEEEEETTHHHH-TTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHH
T ss_pred             cCCEEEEEChhHHH-HHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHH
Confidence            999999999999 9 999999999998                       4  499999999999999999999999999


Q ss_pred             HHHHHhhccccccc
Q 023800          127 KADEVSGARVMRAN  140 (277)
Q Consensus       127 ~a~~v~~~~~~~~~  140 (277)
                      .|+++++.|++++.
T Consensus       182 ~a~~va~~l~~~~~  195 (208)
T 3ot1_A          182 LAQHVAAPMVLHPQ  195 (208)
T ss_dssp             HHHHHHGGGTCCHH
T ss_pred             HHHHHHHhheeCCC
Confidence            99999999999543

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=99.95  E-value=1e-27  Score=197.76  Aligned_cols=141  Identities=38%  Similarity=0.523  Sum_probs=125.0

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccc---ccC------CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNC---RDA------CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~---~~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      +|+..|+++|+++||+++++|++++.+|++++|+.+.+|..++++   ..+      ||..+...++.++.+++||++++
T Consensus        17 ~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~   96 (197)
T 2rk3_A           17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQE   96 (197)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHH
Confidence            378899999999999999999987558999999999999999887   322      77545666788999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHhcCh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~  125 (277)
                      +++|+|++||+|++ +|+++|+|+||+                          |||+|||+|+++++||++++++++.|+
T Consensus        97 ~~gk~i~aiC~G~~-~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~  175 (197)
T 2rk3_A           97 NRKGLIATICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGK  175 (197)
T ss_dssp             HTTCEEEEETTTHH-HHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             HcCCEEEEECHHHH-HHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHHHHHHHHHHHHhcCH
Confidence            99999999999999 999999999988                          999999999999999999999999999


Q ss_pred             hHHHHHhhcccccccCC
Q 023800          126 GKADEVSGARVMRANHG  142 (277)
Q Consensus       126 ~~a~~v~~~~~~~~~~~  142 (277)
                      +.|+++++.|+++.-++
T Consensus       176 ~~a~~va~~~~~~~~~~  192 (197)
T 2rk3_A          176 EVAAQVKAPLVLKDLEH  192 (197)
T ss_dssp             HHHHHHHGGGTC-----
T ss_pred             HHHHHHHHHHhhhhhhh
Confidence            99999999999986543

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=99.95  E-value=1.1e-27  Score=204.42  Aligned_cols=139  Identities=20%  Similarity=0.276  Sum_probs=127.2

Q ss_pred             CchhhHHHHH-HhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc--C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVL-RRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD--A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l-~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~--~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|+..|+++| ++++|+|+++|+++ .+|++++|+.+.+|..+++++.  +     ||.++...+..++.+++||+++++
T Consensus        37 ~e~~~p~dvl~~~~~~~v~~vs~~~-~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~  115 (253)
T 3ewn_A           37 MDLVGPHCMFGSLMGAKIYIVAKSL-DPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGTLAAASDAETLAFMADRGA  115 (253)
T ss_dssp             HHHHHHHHHHTTSTTCEEEEEESSS-SCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCCC-CeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccchhhhccCHHHHHHHHHHHH
Confidence            3788999999 67899999999997 5899999999999999988753  2     774356677889999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhH
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK  127 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~  127 (277)
                      +|++|++||+|++ +|+++|||+||+                         |||+|||+|+++++||++++|+++.|++.
T Consensus       116 ~gk~IaaICtG~~-lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~~  194 (253)
T 3ewn_A          116 RAKYITSVCSGSL-ILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTY  194 (253)
T ss_dssp             TCSEEEEETTHHH-HHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHHHHHHHHHHHHSCHHH
T ss_pred             cCCEEEEEChHHH-HHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHHHHHHHHHHHHcCHHH
Confidence            9999999999999 999999999998                         99999999999999999999999999999


Q ss_pred             HHHHhhcccccccC
Q 023800          128 ADEVSGARVMRANH  141 (277)
Q Consensus       128 a~~v~~~~~~~~~~  141 (277)
                      |+++++.|+|++.+
T Consensus       195 A~~va~~l~~~~~~  208 (253)
T 3ewn_A          195 AECAQLMSEYDPDP  208 (253)
T ss_dssp             HHHHHHHTTCCCCC
T ss_pred             HHHHHHhcccCCCC
Confidence            99999999999644

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=99.95  E-value=1.2e-27  Score=196.86  Aligned_cols=136  Identities=21%  Similarity=0.274  Sum_probs=122.9

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCC--CceeecCCCCEEecCcccccccc--------C-----CCccchhccccChHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCRD--------A-----CGMPGATNLKESEVLES   65 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~--~~~v~~~~g~~v~~d~~~~~~~~--------~-----gG~~~~~~~~~~~~~~~   65 (277)
                      +|+++|+++|+++|++++++|+..  +.++++++|+.+.+|..+++++.        +     ||.++++.+++++.+++
T Consensus        18 ~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~~~~l~~~~~l~~   97 (194)
T 4gdh_A           18 IEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQ   97 (194)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchhHhHhhhCHHHHH
Confidence            489999999999999999999854  34799999999999999988642        2     88777888999999999


Q ss_pred             HHHHHHhC-CCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHH
Q 023800           66 IVKKQASD-GRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALV  119 (277)
Q Consensus        66 ~l~~~~~~-g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li  119 (277)
                      |||+++++ +|++++||+|++  |+.+|+|+||+                         |||+|||+|+++++||+++++
T Consensus        98 ~l~~~~~~~~k~iaaiC~g~~--l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiTs~g~~~~~d~al~lv  175 (194)
T 4gdh_A           98 VVKEFYKKPNKWIGMICAGTL--TAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLL  175 (194)
T ss_dssp             HHHHHTTCTTCEEEEEGGGGH--HHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEEECSGGGHHHHHHHHH
T ss_pred             HHHHhhhcCCceEEeeccccc--chhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEECCCHhHHHHHHHHHH
Confidence            99999865 899999999996  67888899998                         999999999999999999999


Q ss_pred             HHhcChhHHHHHhhccccc
Q 023800          120 EQLYGKGKADEVSGARVMR  138 (277)
Q Consensus       120 ~~l~g~~~a~~v~~~~~~~  138 (277)
                      +++.|++.|+++++.|+|+
T Consensus       176 e~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          176 EQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             HHHSCHHHHHHHHHHTTCC
T ss_pred             HHHcCHHHHHHHHhhccCC
Confidence            9999999999999999985

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=99.94  E-value=3.6e-27  Score=195.65  Aligned_cols=142  Identities=36%  Similarity=0.525  Sum_probs=128.8

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc--eeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL--RVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQ   70 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~--~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~   70 (277)
                      .|+..|+++|+++||+++++|++++.  +|++++|+.+.+|..+++++.   +     ||..++..++.++.+.+||+++
T Consensus        16 ~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~   95 (205)
T 2ab0_A           16 TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQF   95 (205)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhccCHHHHHHHHHH
Confidence            37899999999999999999998743  899999999999999988632   2     7754566678899999999999


Q ss_pred             HhCCCEEEEEchhH-HHHHHHcCCCCCCC-----------------------CCCe--EcCCCCCCHHHHHHHHHHHhcC
Q 023800           71 ASDGRLYAAICVFL-AVALGSWGLLKGLK-----------------------DGKV--VTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        71 ~~~g~~i~aiC~g~-~~~La~aGll~g~~-----------------------dg~~--iT~~g~~~~~~~a~~li~~l~g  124 (277)
                      +++||+|++||+|+ + +|+++|||+||+                       |||+  |||+|+++++||++++++++.|
T Consensus        96 ~~~gk~i~aiC~G~~~-lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g  174 (205)
T 2ab0_A           96 HRSGRIVAAICAAPAT-VLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVG  174 (205)
T ss_dssp             HHTTCEEEEETHHHHH-HTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHHHHHHHHHHHHTC
T ss_pred             HHcCCEEEEECHhHHH-HHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhHHHHHHHHHHHhcC
Confidence            99999999999999 9 999999999998                       8999  9999999999999999999999


Q ss_pred             hhHHHHHhhcccccccCCC
Q 023800          125 KGKADEVSGARVMRANHGD  143 (277)
Q Consensus       125 ~~~a~~v~~~~~~~~~~~~  143 (277)
                      ++.|+++++.|++++.+..
T Consensus       175 ~~~a~~va~~l~~~~~r~~  193 (205)
T 2ab0_A          175 REKAHEVASQLVMAAGIYN  193 (205)
T ss_dssp             HHHHHHHHTTTTCCTTSCC
T ss_pred             hHHHHHHHHhcccCCCCCc
Confidence            9999999999999976644

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=99.94  E-value=1.1e-27  Score=198.29  Aligned_cols=138  Identities=22%  Similarity=0.289  Sum_probs=117.7

Q ss_pred             CchhhHHHHHHhCC------CeEEEEeeCCCceeecCCCCEEecCccccccc--cC------CCccchhccccChHHHHH
Q 023800            1 MEAVITIDVLRRSG------ADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESI   66 (277)
Q Consensus         1 ~E~~~~~~~l~~~~------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~   66 (277)
                      +|+..|+++|++++      |+|+++|.++ .+|++++|+.+.+| .+++++  ..      ||.. .... . +.+++|
T Consensus        19 ~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~-~~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~~-~~~~-~-~~l~~~   93 (202)
T 3gra_A           19 ASFTVAMDVLVTANLLRADSFQFTPLSLDG-DRVLSDLGLELVAT-ELSAAALKELDLLVVCGGLR-TPLK-Y-PELDRL   93 (202)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSEEEEEEESSS-SEEEBTTSCEEECE-ECCSGGGTTCSEEEEECCTT-CCSC-C-TTHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CceEcCCCCEEECC-CcccccCCCCCEEEEeCCCc-hhhc-c-HHHHHH
Confidence            37889999999886      9999999997 69999999999999 998853  22      7743 3322 3 899999


Q ss_pred             HHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC---------------------------CCCeEcCCCCCCHHHHHHHHH
Q 023800           67 VKKQASDGRLYAAICVFLAVALGSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALV  119 (277)
Q Consensus        67 l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~---------------------------dg~~iT~~g~~~~~~~a~~li  119 (277)
                      |++++++|++|++||+|++ +|+++|||+||+                           |||+|||+|+++++||++++|
T Consensus        94 l~~~~~~g~~iaaIC~G~~-~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs~G~~a~~dlal~li  172 (202)
T 3gra_A           94 LNDCAAHGMALGGLWNGAW-FLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSAASPNGAMELMLGLV  172 (202)
T ss_dssp             HHHHHHHTCEEEEETTHHH-HHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEECHHHH-HHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEECCCHHHHHHHHHHHH
Confidence            9999999999999999999 999999999998                           999999999999999999999


Q ss_pred             HHhcChhHHHHHhhcccccccCCCc
Q 023800          120 EQLYGKGKADEVSGARVMRANHGDE  144 (277)
Q Consensus       120 ~~l~g~~~a~~v~~~~~~~~~~~~~  144 (277)
                      +++.|++.|+++++.|++++.+..+
T Consensus       173 ~~~~G~~~A~~va~~l~~~~~~~~~  197 (202)
T 3gra_A          173 RRLYGDGLAEGVEEILSFSGAREGH  197 (202)
T ss_dssp             HHHHCHHHHHHHHHHHC--------
T ss_pred             HHHhCHHHHHHHHHHhCcCcccccc
Confidence            9999999999999999999877554

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=99.93  E-value=3.6e-26  Score=184.82  Aligned_cols=113  Identities=15%  Similarity=0.158  Sum_probs=106.8

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      ++|.|++.+||++.|+..|+++|+++|+++.++|++++ ++++++|..+.+|..++++++.+||+|+||||. ++..+..
T Consensus         9 ~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l~~   86 (177)
T 4hcj_A            9 NILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITLWD   86 (177)
T ss_dssp             EEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGGTT
T ss_pred             CEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHHhh
Confidence            45777788999999999999999999999999999998 999999999999999999988999999999997 4667889


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ++++.+||+++++++|+|++||+|++ +|+++|||+
T Consensus        87 ~~~~~~~l~~~~~~~k~iaaIC~g~~-~La~aGlL~  121 (177)
T 4hcj_A           87 DWRTQGLAKLFLDNQKIVAGIGSGVV-IMANAKILE  121 (177)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEETTHHH-HHHHTTCCT
T ss_pred             CHHHHHHHHHHHHhCCEEEEecccHH-HHHHCCCCC
Confidence            99999999999999999999999999 999999997

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=99.93  E-value=1.4e-25  Score=187.05  Aligned_cols=138  Identities=22%  Similarity=0.284  Sum_probs=124.6

Q ss_pred             CchhhHHHHHH--------hCCCeEEEEeeCCCceeecCCCCEEecCccccccc--cC------CCccchhccccChHHH
Q 023800            1 MEAVITIDVLR--------RSGADVVVASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLE   64 (277)
Q Consensus         1 ~E~~~~~~~l~--------~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~   64 (277)
                      +|+..|+++|+        +.+|+|+++|+++ .+|++++|+.+.+|..+++++  .+      ||. +. .+..++.++
T Consensus        19 ~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~-~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~-~~-~~~~~~~l~   95 (212)
T 3efe_A           19 WEYGYLIAELNSGRYFKKDLAPLKVITVGANK-EMITTMGGLRIKPDISLDECTLESKDLLILPGGT-TW-SEEIHQPIL   95 (212)
T ss_dssp             TTTHHHHHHHHHCTTSCTTCCCCCEEEEESSS-CCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS-CT-TSGGGHHHH
T ss_pred             HHHHHHHHHHHhhhccccCCCCeEEEEEECCC-CeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC-cc-ccccCHHHH
Confidence            58899999999        7899999999997 589999999999999999876  22      774 33 357889999


Q ss_pred             HHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCeEcCCCCCCHHHHH
Q 023800           65 SIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFV  115 (277)
Q Consensus        65 ~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~a  115 (277)
                      +||+++++++++|++||+|++ +|+++|||+||+                             |||+|||+|++ ++||+
T Consensus        96 ~~l~~~~~~gk~iaaiC~G~~-~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~iiTs~G~~-~~d~a  173 (212)
T 3efe_A           96 ERIGQALKIGTIVAAICGATD-ALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFA  173 (212)
T ss_dssp             HHHHHHHHHTCEEEEETHHHH-HHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTEEEECTTC-HHHHH
T ss_pred             HHHHHHHHCCCEEEEEcHHHH-HHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCEEECCCch-HHHHH
Confidence            999999999999999999999 999999999998                             99999999996 99999


Q ss_pred             HHHHHHhcChhHHHHHhhcccccccCCCc
Q 023800          116 VALVEQLYGKGKADEVSGARVMRANHGDE  144 (277)
Q Consensus       116 ~~li~~l~g~~~a~~v~~~~~~~~~~~~~  144 (277)
                      +++|+++.|+ .++++++.|.+.+...+.
T Consensus       174 l~li~~l~g~-~a~~va~~~~~~~~g~~~  201 (212)
T 3efe_A          174 MEVLKKIDVF-TLDALHSWYNLNKTHKPE  201 (212)
T ss_dssp             HHHHHHHTCS-CHHHHHHHHHHHHHCCTH
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHcCCCHH
Confidence            9999999997 999999999999766543

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=99.93  E-value=3.6e-25  Score=181.43  Aligned_cols=117  Identities=38%  Similarity=0.614  Sum_probs=109.0

Q ss_pred             CCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCC-CceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD-KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       158 ~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~-~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      +|++||+|+++|||++.|+..|+++|+++|++++++|+++ + +|+++.|+.+.+|..++++++.+||+|+||||.....
T Consensus         3 ~m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~   81 (190)
T 4e08_A            3 HMSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGE-AVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSN   81 (190)
T ss_dssp             -CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSS-CEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHH
T ss_pred             CCCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCc-ceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHH
Confidence            3668999999999999999999999999999999999998 6 8999999999999999998777899999999964556


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .+..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        82 ~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~  120 (190)
T 4e08_A           82 AMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVAS  120 (190)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCST
T ss_pred             HhhhCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHCCCcC
Confidence            678899999999999999999999999999 999999997

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.92  E-value=1.4e-25  Score=189.41  Aligned_cols=137  Identities=23%  Similarity=0.319  Sum_probs=122.0

Q ss_pred             CchhhHHHHHHhCC--CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSG--ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~--~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|+..|+++|++++  |+++++| ++ .+|++++|+.+.+|..+++....      ||..+...+..++.+++||  +++
T Consensus        34 ~e~~~p~dvl~~~~~~~~v~~vs-~~-~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~  109 (236)
T 3bhn_A           34 VDFFLMNDLLGRTSDSWTVRILG-TK-PEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGIPAALQDENFMSAL--KLD  109 (236)
T ss_dssp             HHHHHHHHHHTTCSSSEEEEEEE-SS-SEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHHHHHHTCHHHHHHC--CCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEE-CC-CcEEecCCcEEecCcccccccCCCEEEEcCCccCHhhhccCHHHHHHH--HhC
Confidence            37899999999876  8999999 76 68999999999999999875433      7734566678899999999  666


Q ss_pred             CCC-EEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           73 DGR-LYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        73 ~g~-~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                      +++ +|++||+|++ +|+++|||+||+                         |||+|||+|+++++||++++|+++.|++
T Consensus       110 ~~~~~IaaIC~G~~-lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~  188 (236)
T 3bhn_A          110 PSRQLIGSICAGSF-VLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSV  188 (236)
T ss_dssp             TTTCEEEEETTHHH-HHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHHHHHHHHHHSCHH
T ss_pred             CCCCEEEEEcHHHH-HHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHHHHHHHHHHHHHHhcCHH
Confidence            677 9999999999 999999999998                         9999999999999999999999999999


Q ss_pred             HHHHHhhcccccccCC
Q 023800          127 KADEVSGARVMRANHG  142 (277)
Q Consensus       127 ~a~~v~~~~~~~~~~~  142 (277)
                      .|+++++.|++++.+.
T Consensus       189 ~A~~va~~l~~~~~~~  204 (236)
T 3bhn_A          189 KRKQIQNQLIPAGQME  204 (236)
T ss_dssp             HHHHHHTTTSCTTCHH
T ss_pred             HHHHHHHhcccCCCCc
Confidence            9999999999986553

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=99.92  E-value=9e-25  Score=175.50  Aligned_cols=114  Identities=25%  Similarity=0.422  Sum_probs=107.7

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ++||+|+++|||+..|+..|+++|+.+|++++++|++++ +++++.|+.+.++..++++++.+||+|+||||. ....+.
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~   79 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVR   79 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHT
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhc
Confidence            579999999999999999999999999999999999998 999999999999999999877789999999997 456677


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .++++.+||+++++++|+|++||+|++ +|+++|||+
T Consensus        80 ~~~~l~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~  115 (168)
T 3l18_A           80 LNEKAVMITRRMFEDDKPVASICHGPQ-ILISAKVLK  115 (168)
T ss_dssp             TCHHHHHHHHHHHHTTCCEEEETTTHH-HHHHTTCCT
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECHhHH-HHHHCCccC
Confidence            899999999999999999999999999 999999997

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.92  E-value=3.8e-25  Score=183.34  Aligned_cols=133  Identities=23%  Similarity=0.290  Sum_probs=120.0

Q ss_pred             CchhhHHHHHHhC-CCeEEEEeeCCCceeecCCCCEEecCccccccc-c-C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCR-D-A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~-~-~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|++.|+++|+++ +|+++++|+++ . |++++|+.+.+|..++++. . +     ||. +...  .++.+++||+++++
T Consensus        17 ~E~~~~~~~l~~~~~~~v~~vs~~~-~-V~~~~G~~v~~d~~l~~~~~~~D~livpGG~-~~~~--~~~~l~~~l~~~~~   91 (206)
T 3f5d_A           17 WEGVYLASALNQREDWSVHTVSLDP-I-VSSIGGFKTSVDYIIGLEPANFNLLVMIGGD-SWSN--DNKKLLHFVKTAFQ   91 (206)
T ss_dssp             TTSHHHHHHHHTSTTEEEEEEESSS-E-EEBTTSCEEECSEETTSSCSCCSEEEECCBS-CCCC--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeEEEEEECCC-C-EEecCCcEEecCcChhhCCcCCCEEEEcCCC-Chhh--cCHHHHHHHHHHHH
Confidence            5899999999998 99999999997 5 9999999999999998874 2 2     764 4443  89999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                      ++++|++||+|++ +|+++|||+||+                            |||+|||+|++ ++||++++|+.+. 
T Consensus        92 ~gk~iaaiC~G~~-~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a-~id~al~li~~l~-  168 (206)
T 3f5d_A           92 KNIPIAAICGAVD-FLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMID-  168 (206)
T ss_dssp             TTCCEEEETHHHH-HHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC-HHHHHHHHHHHTT-
T ss_pred             cCCEEEEECHHHH-HHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch-HHHHHHHHHHHhC-
Confidence            9999999999999 999999999998                            99999999997 9999999999865 


Q ss_pred             hhHHHHHhhcccccccC
Q 023800          125 KGKADEVSGARVMRANH  141 (277)
Q Consensus       125 ~~~a~~v~~~~~~~~~~  141 (277)
                      .+.|+++++.|++.+..
T Consensus       169 ~~~a~~va~~~~~~~~g  185 (206)
T 3f5d_A          169 FDTPENIEKMMYMNRYG  185 (206)
T ss_dssp             CSCHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHhhhhhcc
Confidence            68999999999998754

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=99.92  E-value=8.9e-25  Score=181.59  Aligned_cols=116  Identities=41%  Similarity=0.628  Sum_probs=108.2

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCC-CceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD-KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~-~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      +++||+|+++|||++.|+..|+++|+++|++++++|+++ + +|++++|+.+.++..++++++++||+|+||||....+.
T Consensus         8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~-~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~   86 (208)
T 3ot1_A            8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL-QVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA   86 (208)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS-EEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH
T ss_pred             cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc-ceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH
Confidence            568999999999999999999999999999999999996 6 99999999999999999987778999999999754666


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhh-HHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASP-ALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~lLa~aGlL~  276 (277)
                      +..++++.+||+++++++|+|++||+|+ + +|+++|||+
T Consensus        87 l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~-~La~aGlL~  125 (208)
T 3ot1_A           87 FADSTALLALIDAFSQQGKLVAAICATPAL-VFAKQQKFV  125 (208)
T ss_dssp             HHTCHHHHHHHHHHHHTTCEEEEETTHHHH-TTTTTTCST
T ss_pred             HhhCHHHHHHHHHHHHcCCEEEEEChhHHH-HHHHCCccC
Confidence            7889999999999999999999999999 9 999999997

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=99.92  E-value=2.1e-24  Score=177.90  Aligned_cols=117  Identities=38%  Similarity=0.551  Sum_probs=107.9

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhh-ccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA-AKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~-~~~~~D~livpGG~~~~~~  237 (277)
                      +++||+|+++|||++.|+..|+++|+++|++++++|++++.+++++.|+.+.++..++++ ++.+||+|+||||......
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            357999999999999999999999999999999999987547999999999999999987 6678999999999644556


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +..++++.+||+++++++|+|++||+|++ +||++|||+
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~-~La~aGll~  119 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGF  119 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCST
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHCCCCC
Confidence            77899999999999999999999999999 999999997

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=99.91  E-value=1.1e-24  Score=175.06  Aligned_cols=120  Identities=24%  Similarity=0.352  Sum_probs=110.1

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      .|+..|+++|+++||+++++|+++ .+|++++|+.+.+|..+++++.   +     ||. +...++.++.+.+||+++++
T Consensus        16 ~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~~~~~l~~~l~~~~~   93 (168)
T 3l18_A           16 LELIYPLHRIKEEGHEVYVASFQR-GKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVRLNEKAVMITRRMFE   93 (168)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSS-EEEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCC-CEEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhccCHHHHHHHHHHHH
Confidence            378899999999999999999997 6999999999999999998753   2     774 56667889999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      ++++|++||+|++ +|+++|||+||+                         |||+|||+|++++++|+++++++|.
T Consensus        94 ~~k~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d~~l~li~~l~  168 (168)
T 3l18_A           94 DDKPVASICHGPQ-ILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLLH  168 (168)
T ss_dssp             TTCCEEEETTTHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHGGGCC
T ss_pred             CCCEEEEECHhHH-HHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHHHHHHHHHhhC
Confidence            9999999999999 999999999998                         9999999999999999999999763

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=99.91  E-value=4.9e-24  Score=176.70  Aligned_cols=116  Identities=47%  Similarity=0.631  Sum_probs=108.1

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc--eEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL--EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~--~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      ++||+|+++|||+..|+..|+++|+++|++++++|++++.  +|.+++|+.+.++..++++++++||+|+||||......
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~   81 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   81 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence            5799999999999999999999999999999999999864  79999999999999999987778999999999755666


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhh-HHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASP-ALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~lLa~aGlL~  276 (277)
                      +..++++.+||+++++++|+|++||+|+ + +|+++|||+
T Consensus        82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~-lLa~aGlL~  120 (205)
T 2ab0_A           82 FRDSTLLVETVKQFHRSGRIVAAICAAPAT-VLVPHDIFP  120 (205)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHH-HTTTTTSSS
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEECHhHHH-HHHHCCccC
Confidence            7789999999999999999999999999 9 999999997

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.91  E-value=6.4e-24  Score=174.38  Aligned_cols=116  Identities=23%  Similarity=0.352  Sum_probs=108.0

Q ss_pred             CCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCce-EEcccCc-EEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE-ILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       158 ~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~-v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      .+++||+|+++|||+..|+..|+++|+++|++++++|++++ + |.++.|+ .+.++..++++++.+||+|+||||. +.
T Consensus        21 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~-~~   98 (193)
T 1oi4_A           21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SP   98 (193)
T ss_dssp             TCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HH
T ss_pred             ccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCCc-CH
Confidence            46789999999999999999999999999999999999988 6 9999999 9999999998766789999999995 45


Q ss_pred             HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..+..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        99 ~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~-lLa~aGLL~  138 (193)
T 1oi4_A           99 DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIR  138 (193)
T ss_dssp             HHHTTSHHHHHHHHHHHHTTCCEEEETTTHH-HHHHHTCCT
T ss_pred             HHhhhCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHCCccC
Confidence            6677789999999999999999999999999 999999997

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.91  E-value=4.4e-24  Score=174.62  Aligned_cols=134  Identities=26%  Similarity=0.376  Sum_probs=119.2

Q ss_pred             CchhhHHHHHHh-CCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      +|+..|+++|++ .+|+++++|+++ .+|++++|+.+.+|..+++++.   +     ||. +.. ...++.+++||++++
T Consensus        15 ~e~~~~~~~l~~a~~~~v~~vs~~~-~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~-~~~-~~~~~~l~~~l~~~~   91 (188)
T 2fex_A           15 WEPALLAAAARSYLGVEIVHATPDG-MPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SWE-KGTAADLGGLVKRFR   91 (188)
T ss_dssp             TSSHHHHHHHHHHSCCEEEEEETTS-SCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HHH-HTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEEeCCC-CceeeCCCcEEeccccHHHCCcccCCEEEECCCC-ccc-ccccHHHHHHHHHHH
Confidence            488999999999 999999999997 5899999999999999988752   2     764 333 467899999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      +++++|++||+|++ +|+++|||+||+                             |||+|||+|++ ++||++++++++
T Consensus        92 ~~~k~i~aiC~G~~-~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~-~~d~al~lv~~l  169 (188)
T 2fex_A           92 DRDRLVAGICAAAS-ALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSL  169 (188)
T ss_dssp             HTTCEEEEETHHHH-HHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTTC-HHHHHHHHHHHT
T ss_pred             HCCCEEEEECHHHH-HHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCcc-HHHHHHHHHHHc
Confidence            99999999999999 999999999988                             88999999997 899999999999


Q ss_pred             cChhHHHHHhhcccccccC
Q 023800          123 YGKGKADEVSGARVMRANH  141 (277)
Q Consensus       123 ~g~~~a~~v~~~~~~~~~~  141 (277)
                      .|.+.++  ++.+.|....
T Consensus       170 ~~~~~~~--~~~~~~~~~~  186 (188)
T 2fex_A          170 GLFGPEA--EAELQIFAAE  186 (188)
T ss_dssp             TCCSHHH--HHHHGGGGGG
T ss_pred             cCCCHHH--HHHHHHHHcc
Confidence            9998887  8888877544

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=99.91  E-value=6.1e-24  Score=173.99  Aligned_cols=116  Identities=23%  Similarity=0.366  Sum_probs=106.1

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc-----ccCcEEEeCcchhhhccCCccEEEEcCCcc
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----SCQVKLVADMLIDEAAKLSYDLIVLPGGLG  233 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~-----~~g~~i~~~~~~~~~~~~~~D~livpGG~~  233 (277)
                      +++||+|+++|||+..|+..|+++|+.+|++++++|++++ ++.+     +.|+.+.++..++++++.+||+|+||||..
T Consensus         8 ~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3579999999999999999999999999999999999998 8887     779999999999988767899999999964


Q ss_pred             hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       234 ~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ....+..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~-~La~aGlL~  128 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPW-SLSETGIAQ  128 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTH-HHHHTTTTT
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHH-HHHhCcccC
Confidence            566677899999999999999999999999999 999999997

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=99.91  E-value=1.1e-24  Score=178.43  Aligned_cols=126  Identities=26%  Similarity=0.310  Sum_probs=112.3

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeec-----CCCCEEecCccccccc--c-C-----CCccchhccccChHHHHHHH
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDA-----CHGVKIVADALVSNCR--D-A-----CGMPGATNLKESEVLESIVK   68 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----~~g~~v~~d~~~~~~~--~-~-----gG~~~~~~~~~~~~~~~~l~   68 (277)
                      |+..|+++|+++||+++++|+++ .++++     ++|+.+.+|..+++++  . +     ||..+...++.++.+++||+
T Consensus        24 e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~l~  102 (190)
T 2vrn_A           24 ELTSPRAAIEAAGGTTELISLEP-GEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVR  102 (190)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSS-SEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEecCC-CccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHHHHhhCHHHHHHHH
Confidence            78899999999999999999997 57887     7799999999998873  2 2     77545666788999999999


Q ss_pred             HHHhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHh-
Q 023800           69 KQASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQL-  122 (277)
Q Consensus        69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l-  122 (277)
                      ++++++++|++||+|++ +|+++|||+||+                         |||+|||+|++++++|++++++++ 
T Consensus       103 ~~~~~gk~i~aiC~G~~-~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g~~s~~~~~l~li~~l~  181 (190)
T 2vrn_A          103 DMYDAGKPIAAICHGPW-SLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFA  181 (190)
T ss_dssp             HHHHTTCCEEEC-CTTH-HHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEECHhHH-HHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCChhhHHHHHHHHHHHHh
Confidence            99999999999999999 999999999998                         999999999999999999999999 


Q ss_pred             cChhHHH
Q 023800          123 YGKGKAD  129 (277)
Q Consensus       123 ~g~~~a~  129 (277)
                      .|++.|+
T Consensus       182 ~g~~~a~  188 (190)
T 2vrn_A          182 EGDHSSR  188 (190)
T ss_dssp             HCCCGGG
T ss_pred             ccccccc
Confidence            8887664

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.91  E-value=1.7e-24  Score=192.70  Aligned_cols=134  Identities=25%  Similarity=0.362  Sum_probs=120.8

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCC-EEecCcccccccc---C-----CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGV-KIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~-~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      +|+..|+++|+++||+|+++|++++..|++++|+ .+.+|..+++++.   +     ||. ++..++.++.+.+||++++
T Consensus        24 ~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~~~l~~~~~l~~~Lr~~~  102 (365)
T 3fse_A           24 TEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-APDKMRRNPNTVRFVQEAM  102 (365)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-chhhccCCHHHHHHHHHHH
Confidence            3789999999999999999999974239999999 9999999988752   2     774 6666788999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                      ++|++|++||+|++ +|+++|||+||+                         |||+|||+|+++++||++++|+++.|.+
T Consensus       103 ~~gk~IaAIC~G~~-lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a~~d~al~lIe~L~g~~  181 (365)
T 3fse_A          103 EQGKLVAAVCHGPQ-VLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGG  181 (365)
T ss_dssp             HTTCEEEEETTTHH-HHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHHHHTTCCC
T ss_pred             HCCCEEEEECHHHH-HHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHHHHHHHHHHHHHhcCch
Confidence            99999999999999 999999999999                         9999999999999999999999999998


Q ss_pred             HHHHHhhccc
Q 023800          127 KADEVSGARV  136 (277)
Q Consensus       127 ~a~~v~~~~~  136 (277)
                      .++++++.+-
T Consensus       182 ~A~~lA~~~~  191 (365)
T 3fse_A          182 KDAALPDEKD  191 (365)
T ss_dssp             SSSCCCCTTC
T ss_pred             HHHHHhhhhh
Confidence            8887776554

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=99.90  E-value=1.9e-23  Score=178.14  Aligned_cols=115  Identities=17%  Similarity=0.275  Sum_probs=106.1

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHH-HhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDIL-RRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l-~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      +++||+|+++|||+++|+.+|+++| +.++++++++|++++ +|+++.|+.+.+|..+++++ ..||+|+||||..+...
T Consensus        22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            5589999999999999999999999 567999999999998 99999999999999999876 47899999999633556


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~-lLa~AGLL~  137 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGSL-ILGAAGLLK  137 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHH-HHHHTTCCT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCCC
Confidence            77899999999999999999999999999 999999997

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=99.90  E-value=1.5e-23  Score=174.73  Aligned_cols=113  Identities=20%  Similarity=0.289  Sum_probs=105.5

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHH--------hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILR--------RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~--------~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG  231 (277)
                      ++||+|+++|||++.|+..|+++|+        +++++++++|++++ +|++++|+.+.+|..++++++.+||+|+||||
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG   83 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPGG   83 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECCC
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECCC
Confidence            5799999999999999999999999        67899999999998 99999999999999999987778999999999


Q ss_pred             cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .. . .+..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        84 ~~-~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~-~La~aGlL~  125 (212)
T 3efe_A           84 TT-W-SEEIHQPILERIGQALKIGTIVAAICGATD-ALANMGYLD  125 (212)
T ss_dssp             SC-T-TSGGGHHHHHHHHHHHHHTCEEEEETHHHH-HHHHTTTTS
T ss_pred             Cc-c-ccccCHHHHHHHHHHHHCCCEEEEEcHHHH-HHHHcCCCC
Confidence            64 2 357789999999999999999999999999 999999997

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=99.90  E-value=6.3e-24  Score=175.61  Aligned_cols=112  Identities=20%  Similarity=0.225  Sum_probs=102.2

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCC------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCc
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAK------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL  232 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~  232 (277)
                      +++||+|+++|||+++|+.+|+|+|+.+|      |+++++|.+++ +|++++|+.+.+| .+++++.++||+|+||||.
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~   81 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGGL   81 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECCT
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCCC
Confidence            45799999999999999999999999987      99999999998 9999999999999 9998766789999999996


Q ss_pred             chHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          233 GGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       233 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .. ... . +++.+||+++++++++|++||+|++ +||++|||+
T Consensus        82 ~~-~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~-~La~aGLL~  121 (202)
T 3gra_A           82 RT-PLK-Y-PELDRLLNDCAAHGMALGGLWNGAW-FLGRAGVLD  121 (202)
T ss_dssp             TC-CSC-C-TTHHHHHHHHHHHTCEEEEETTHHH-HHHHHTCCT
T ss_pred             ch-hhc-c-HHHHHHHHHHHhhCCEEEEECHHHH-HHHHcCCcC
Confidence            43 222 3 8999999999999999999999999 999999997

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=99.90  E-value=2.3e-23  Score=175.69  Aligned_cols=113  Identities=20%  Similarity=0.284  Sum_probs=105.5

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHh-CCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      |++||+|+++|||+.+|+.+|+++|++ ++++++++|++++ +|++++|+.+.+|..++++  ++||+|+||||. +...
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~-g~~~   79 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADC--PPLDVICIPGGT-GVGA   79 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTC--CCCSEEEECCST-THHH
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHC--CcCCEEEECCCC-Chhh
Confidence            567999999999999999999999999 7999999999998 9999999999999999986  369999999996 4566


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +..++++.+||+++++++++|++||+|++ +|+++|||+
T Consensus        80 ~~~~~~l~~~lr~~~~~g~~v~aiC~G~~-~La~aGLL~  117 (231)
T 3noq_A           80 LMEDPQALAFIRQQAARARYVTSVSTGSL-VLGAAGLLQ  117 (231)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHH-HHHHTTTTT
T ss_pred             hccCHHHHHHHHHHHhcCCEEEEECHHHH-HHHHcCCCC
Confidence            77899999999999999999999999999 999999997

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=99.90  E-value=2.2e-23  Score=173.24  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=103.8

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG  231 (277)
                      +++||+|+++|||+++|+.+|+|+|+.+|       |+++++|.+++ +|++++|+.+.+|..++++  ++||+|+||||
T Consensus         7 ~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~--~~~D~livpGg   83 (209)
T 3er6_A            7 KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSF--DFTNILIIGSI   83 (209)
T ss_dssp             CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred             CCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence            46799999999999999999999999986       89999999998 9999999999999999986  47999999999


Q ss_pred             cchHH-hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          232 LGGAQ-AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       232 ~~~~~-~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..... .+..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~-~La~aGLL~  128 (209)
T 3er6_A           84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIF-VVAKAGLLQ  128 (209)
T ss_dssp             SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHHTCCS
T ss_pred             CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHH-HHHHcCCCC
Confidence            64222 236799999999999999999999999999 999999997

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.89  E-value=2.9e-23  Score=169.73  Aligned_cols=113  Identities=21%  Similarity=0.369  Sum_probs=105.0

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHh-CCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      |+||+|+++|||++.|+..|+++|++ ++++++++|++++ +|++++|+.+.++..++++++.+||+|+||||.. .. .
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~~-~   77 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-WE-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-HH-H
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-cc-c
Confidence            37999999999999999999999999 9999999999998 9999999999999999998767899999999963 33 4


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++.+.+||+++++++++|++||+|++ +||++|||+
T Consensus        78 ~~~~~l~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~  114 (188)
T 2fex_A           78 GTAADLGGLVKRFRDRDRLVAGICAAAS-ALGGTGVLN  114 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHH-HHHHTTTTT
T ss_pred             cccHHHHHHHHHHHHCCCEEEEECHHHH-HHHHCCCcC
Confidence            6788999999999999999999999999 999999997

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.89  E-value=8.3e-23  Score=181.87  Aligned_cols=115  Identities=24%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCce-EEcccCc-EEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE-ILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~-v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      +++||+|+++|||++.|+.+|+++|+.+|++++++|++++ + |.++.|+ .+.+|..++++++.+||+|+||||. ++.
T Consensus         9 ~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~~   86 (365)
T 3fse_A            9 GKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-APD   86 (365)
T ss_dssp             --CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HHH
T ss_pred             CceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-chh
Confidence            4689999999999999999999999999999999999998 6 9999999 9999999999877789999999997 456


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .+..++.+.+||+++++++++|++||+|++ +||++|||+
T Consensus        87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~-lLA~AGLLd  125 (365)
T 3fse_A           87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQ-VLIEGDLLR  125 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCCT
T ss_pred             hccCCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHcCCcC
Confidence            678899999999999999999999999999 999999997

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=99.89  E-value=5.1e-23  Score=171.26  Aligned_cols=113  Identities=17%  Similarity=0.284  Sum_probs=104.2

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhC--CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRA--KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a--~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      +++||+|+++|||+++|+.+|+++|+++  +++++++|++++ +|+++.|+.+.+|..+++++  .||+|+||||. ...
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~~--~~D~livpGG~-~~~   78 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDEN--IEKILFVPGGS-GTR   78 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCSS--SEEEEEECCST-HHH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhCC--CCCEEEECCCc-chh
Confidence            4579999999999999999999999998  499999999998 99999999999999998864  59999999996 455


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .+..++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~-~La~aGLL~  117 (211)
T 3mgk_A           79 EKVNDDNFINFIGNMVKESKYIISVCTGSA-LLSKAGILN  117 (211)
T ss_dssp             HHTTCHHHHHHHHHHHHHCSEEEECTTHHH-HHHHTTTTT
T ss_pred             hhcCCHHHHHHHHHHHHcCCEEEEEchHHH-HHHhcCCcC
Confidence            677899999999999999999999999999 999999997

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.89  E-value=8.2e-23  Score=167.78  Aligned_cols=119  Identities=21%  Similarity=0.285  Sum_probs=108.5

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCce-eecCCCC-EEecCccccccc--c-C-----CCccchhccccChHHHHHHHHHH
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLR-VDACHGV-KIVADALVSNCR--D-A-----CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~-v~~~~g~-~v~~d~~~~~~~--~-~-----gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      |+..|+++|+++||++.++|+++ .+ |++++|+ .+.+|..+++++  . +     || .+...+..++.+.+||++++
T Consensus        38 e~~~~~~~l~~ag~~v~~vs~~~-~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG-~~~~~l~~~~~l~~~l~~~~  115 (193)
T 1oi4_A           38 EFTSPADEFRKAGHEVITIEKQA-GKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG-HSPDYLRGDNRFVTFTRDFV  115 (193)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESST-TCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB-THHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEECCC-CcceecCCCCeEEECCCChHHCCcccCCEEEECCC-cCHHHhhhCHHHHHHHHHHH
Confidence            67899999999999999999997 46 9999999 999999998863  2 2     77 46666778999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCC-eEcCCCCCCHHHHHHHHHHHhc
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGK-VVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~-~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      +++++|++||+|++ +|+++|||+||+                         ||| +|||+|+++++||++++++++.
T Consensus       116 ~~gk~i~aIC~G~~-lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          116 NSGKPVFAICHGPQ-LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             HTTCCEEEETTTHH-HHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             HcCCEEEEECHHHH-HHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence            99999999999999 999999999998                         999 9999999999999999999974

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.88  E-value=1.4e-22  Score=167.80  Aligned_cols=110  Identities=25%  Similarity=0.345  Sum_probs=102.1

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      ++||+|+++|||++.|+..|.+.|+++ +++++++|++++  |+++.|+.+.+|..++++ +++||+|+||||.. ... 
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~-~~~-   77 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDS-WSN-   77 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBSC-CCC-
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCCC-hhh-
Confidence            579999999999999999999999998 999999999985  899999999999999987 46899999999963 443 


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                       .++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        78 -~~~~l~~~l~~~~~~gk~iaaiC~G~~-~La~aGLL~  113 (206)
T 3f5d_A           78 -DNKKLLHFVKTAFQKNIPIAAICGAVD-FLAKNGLLN  113 (206)
T ss_dssp             -CCHHHHHHHHHHHHTTCCEEEETHHHH-HHHHTTTTT
T ss_pred             -cCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCC
Confidence             889999999999999999999999999 999999997

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.88  E-value=2.7e-22  Score=162.03  Aligned_cols=118  Identities=19%  Similarity=0.342  Sum_probs=103.1

Q ss_pred             hhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccc----ccC------CC--ccchhccc---cChHHHHHHH
Q 023800            4 VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNC----RDA------CG--MPGATNLK---ESEVLESIVK   68 (277)
Q Consensus         4 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~----~~~------gG--~~~~~~~~---~~~~~~~~l~   68 (277)
                      +..++.+.+++|+++++|++++.+|++++|+.+.+|..++++    ..+      ||  .++...+.   .++.+++||+
T Consensus        19 ~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~   98 (175)
T 3cne_A           19 FQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIK   98 (175)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHH
T ss_pred             chhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHH
Confidence            444555558899999999985468999999999999999886    222      77  54555555   7899999999


Q ss_pred             HHHhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           69 KQASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      ++++++++|++||+|++ +|+++|||+||+                       |||+|||+|+++++||++++++++
T Consensus        99 ~~~~~gk~i~aiC~G~~-~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A           99 TFGEKGKMMIGHCAGAM-MFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             HHHHTTCEEEEETTHHH-HHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTEEEESSGGGGGGTHHHHHHHH
T ss_pred             HHHHCCCEEEEECHHHH-HHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCEEeCCChHHHHHHHHHHHHHh
Confidence            99999999999999999 999999999998                       999999999999999999999987

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.87  E-value=7.4e-23  Score=173.58  Aligned_cols=125  Identities=19%  Similarity=0.278  Sum_probs=105.7

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceee---------------------cCCCCEEecCccccccccC--------CCc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVD---------------------ACHGVKIVADALVSNCRDA--------CGM   51 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~---------------------~~~g~~v~~d~~~~~~~~~--------gG~   51 (277)
                      .|++.|+++|+++|++|+++|++++.++.                     ++++..+.++..+++++..        ||+
T Consensus        29 ~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~  108 (244)
T 3kkl_A           29 VEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGH  108 (244)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCST
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCC
Confidence            38999999999999999999998743331                     1334567778888887532        886


Q ss_pred             cchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc-------CCCCCCC--------------------------
Q 023800           52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK--------------------------   98 (277)
Q Consensus        52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~--------------------------   98 (277)
                      .+++.++.++.+.+||++++++||+|+|||+|++ +|+++       |||+||+                          
T Consensus       109 ~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~-~La~a~~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l  187 (244)
T 3kkl_A          109 GALFDYPKAKNLQDIASKIYANGGVIAAICHGPL-LFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTV  187 (244)
T ss_dssp             THHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTTTCEECCSCHHHHHHHTTHHHHHHTTCCCH
T ss_pred             chhhhcccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhhccccCCceeCCceecCCCcHHHHhhhhhhhccccccccH
Confidence            5557789999999999999999999999999999 99999       9999976                          


Q ss_pred             ------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           99 ------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        99 ------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                                              |||+|||+||+++.+|++++|+++.+.+
T Consensus       188 ~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~  239 (244)
T 3kkl_A          188 ERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE  239 (244)
T ss_dssp             HHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred             HHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence                                    7899999999999999999999998754

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=99.87  E-value=5.5e-22  Score=162.88  Aligned_cols=116  Identities=22%  Similarity=0.330  Sum_probs=99.8

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC--ceEEcccCcEEEeCcchhhhcc-----CCccEEEEcCC
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK--LEILASCQVKLVADMLIDEAAK-----LSYDLIVLPGG  231 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~--~~v~~~~g~~i~~~~~~~~~~~-----~~~D~livpGG  231 (277)
                      +|+||+|+++|||+++|+.+|+++|+++|+++++++...+  .++++++|+.+.+|..+++++.     ++||+|+||||
T Consensus         3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG   82 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG   82 (194)
T ss_dssp             --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence            4689999999999999999999999999999999987543  3689999999999999987653     35999999999


Q ss_pred             cchHHhhhcCHHHHHHHHHHHHc-CCcEEEEchhhHHhhhhCCCCC
Q 023800          232 LGGAQAFAKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       232 ~~~~~~~~~~~~~~~~l~~~~~~-~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..+.+.++.++.+.+||++++++ +|+|++||+|++  |+++|+|+
T Consensus        83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~--l~~aglL~  126 (194)
T 4gdh_A           83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL--TAKTSGLP  126 (194)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH--HHHHTTCC
T ss_pred             chhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc--chhhceec
Confidence            76678889999999999999865 789999999987  45566665

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.87  E-value=6.1e-22  Score=166.24  Aligned_cols=116  Identities=23%  Similarity=0.325  Sum_probs=103.4

Q ss_pred             CCCeEEEEec----------CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEccc--------C-----cEEEeCcch
Q 023800          159 NSPQILVPIA----------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILASC--------Q-----VKLVADMLI  215 (277)
Q Consensus       159 ~~~kV~ill~----------~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~--------g-----~~i~~~~~~  215 (277)
                      |++||+|+++          +||+..|+..|+++|+++|++++++|++++ ++.+..        |     ..+.++..+
T Consensus         4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l   82 (224)
T 1u9c_A            4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   82 (224)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCCh
Confidence            3479999999          999999999999999999999999999987 666442        3     678888888


Q ss_pred             hhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC------CCC
Q 023800          216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLK  276 (277)
Q Consensus       216 ~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG------lL~  276 (277)
                      +++++.+||+|+||||......+..++.+.+||+++++++|+|++||+|++ +|+++|      ||+
T Consensus        83 ~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~-~La~ag~~~g~~lL~  148 (224)
T 1u9c_A           83 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVK  148 (224)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTT
T ss_pred             HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHH-HHHHccccCCCceec
Confidence            888777899999999975445578899999999999999999999999999 999999      886

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.87  E-value=2.8e-22  Score=169.65  Aligned_cols=117  Identities=25%  Similarity=0.353  Sum_probs=101.5

Q ss_pred             CCCeEEEEec-----CCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchh
Q 023800          159 NSPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLID  216 (277)
Q Consensus       159 ~~~kV~ill~-----~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~  216 (277)
                      |++||+|++.     |||+..|+..|+++|+++|++|+++|+++++          ++.++.|+.+.++       ..++
T Consensus        22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~  101 (242)
T 3l3b_A           22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE  101 (242)
T ss_dssp             --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred             ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence            4489999998     9999999999999999999999999998751          4667788888887       6788


Q ss_pred             hhccCCccEEEEcCCcchHHhh-----------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC-CCC
Q 023800          217 EAAKLSYDLIVLPGGLGGAQAF-----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLK  276 (277)
Q Consensus       217 ~~~~~~~D~livpGG~~~~~~~-----------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG-lL~  276 (277)
                      ++++++||+|+||||......+           +.++.+.+||+++++++|+|++||+|++ +|+++| ||+
T Consensus       102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~-~La~ag~lL~  172 (242)
T 3l3b_A          102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPA-VVVALLKDIA  172 (242)
T ss_dssp             GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHH-HHHHHHTTTC
T ss_pred             HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhCcccC
Confidence            8877889999999997543322           5579999999999999999999999999 999999 986

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.86  E-value=4.7e-22  Score=166.94  Aligned_cols=123  Identities=24%  Similarity=0.310  Sum_probs=107.1

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCC--------C-----CEEecCcccccccc---C-----CCccchhccccC
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACH--------G-----VKIVADALVSNCRD---A-----CGMPGATNLKES   60 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~--------g-----~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~   60 (277)
                      |+..|+++|+++||+|+++|+++ .++++..        |     ..+.++..+++++.   +     ||......+..+
T Consensus        30 e~~~p~~~l~~ag~~v~~vs~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~  108 (224)
T 1u9c_A           30 EFAVPYLVFQEKGYDVKVASIQG-GEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDN  108 (224)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSC-BCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTC
T ss_pred             HHHHHHHHHHHCCCeEEEECCCC-CccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcC
Confidence            88999999999999999999997 5666442        3     67888888888642   2     775444567889


Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC------CCCCCC------------------------------------
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK------------------------------------   98 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~------------------------------------   98 (277)
                      +.+.+||+++++++|+|++||+|++ +|+++|      ||+||+                                    
T Consensus       109 ~~l~~~l~~~~~~~k~iaaiC~G~~-~La~ag~~~g~~lL~Gr~~T~~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~  187 (224)
T 1u9c_A          109 ETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRG  187 (224)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCC
T ss_pred             HHHHHHHHHHHHCCCEEEEEChHHH-HHHHccccCCCceecCcEEecCCCHHHhhccccccCCccHHHHHHHcCCEEecC
Confidence            9999999999999999999999999 999999      999976                                    


Q ss_pred             ---------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           99 ---------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        99 ---------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                               |||+|||+|++++++|++++++++.|++
T Consensus       188 ~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~  224 (224)
T 1u9c_A          188 GKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  224 (224)
T ss_dssp             STTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             CCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence                     6899999999999999999999999864

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.86  E-value=2.6e-21  Score=156.33  Aligned_cols=110  Identities=23%  Similarity=0.314  Sum_probs=96.8

Q ss_pred             CCeEEEEecC---C---CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhh--ccCCccEEEEcCC
Q 023800          160 SPQILVPIAN---G---SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA--AKLSYDLIVLPGG  231 (277)
Q Consensus       160 ~~kV~ill~~---g---~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~--~~~~~D~livpGG  231 (277)
                      ++||+|+++|   |   |++.|+..      +++++++++|++++.++++++|+.+.++..++++  ++++||+|+||||
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG   75 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG   75 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence            5799999999   9   88877766      7899999999995338999999999999999987  6678999999999


Q ss_pred             --cchHHhhh---cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          232 --LGGAQAFA---KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       232 --~~~~~~~~---~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                        ......+.   .++++.+||+++++++|+|++||+|++ +||++|||+
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~-~La~aGlL~  124 (175)
T 3cne_A           76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAM-MFDFTGITK  124 (175)
T ss_dssp             TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHH-HHHHTTTTT
T ss_pred             cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHCCCcC
Confidence              53344455   788999999999999999999999999 999999997

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.85  E-value=1e-20  Score=179.07  Aligned_cols=112  Identities=12%  Similarity=0.133  Sum_probs=107.0

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +++||+||+.|||+..|+..++++|+++|++|.++|++++ +|+++.|..+.+|.++++++..+||+|+||||  +...+
T Consensus       599 ~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~L  675 (753)
T 3ttv_A          599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADI  675 (753)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGT
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHh
Confidence            4589999999999999999999999999999999999998 89999999999999999998888999999999  46778


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL  274 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGl  274 (277)
                      +.++.+++||+++++++|+|++||+|++ +|+++||
T Consensus       676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~-lLa~AGL  710 (753)
T 3ttv_A          676 ADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKI  710 (753)
T ss_dssp             TTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGGGTC
T ss_pred             hhCHHHHHHHHHHHhcCCeEEEECchHH-HHHHcCC
Confidence            9999999999999999999999999999 9999998

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.84  E-value=9.2e-22  Score=166.97  Aligned_cols=124  Identities=20%  Similarity=0.212  Sum_probs=102.3

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecC---------------------CCCEEec-CccccccccC--------CC
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDAC---------------------HGVKIVA-DALVSNCRDA--------CG   50 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~---------------------~g~~v~~-d~~~~~~~~~--------gG   50 (277)
                      .|+++|+++|+++||+|+++|++++.++...                     ++..+.. +..+++++..        ||
T Consensus        35 ~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG  114 (247)
T 3n7t_A           35 SEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGG  114 (247)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCC
Confidence            3899999999999999999999874333211                     1123445 6777776532        88


Q ss_pred             ccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc------CCCCCCC--------------------------
Q 023800           51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW------GLLKGLK--------------------------   98 (277)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a------Gll~g~~--------------------------   98 (277)
                      +...+.++.++.+.+||++++++||+|+|||+|++ +|+++      |||+||+                          
T Consensus       115 ~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~-~La~a~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l  193 (247)
T 3n7t_A          115 HGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPA-MLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTI  193 (247)
T ss_dssp             TTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGCBCTTSSBTTTTCEECCCCHHHHHHTTCHHHHHHTTCCCH
T ss_pred             CchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHhhcccCCccccCceecCCCcHHHhhhhhhhhccccchhhH
Confidence            63346789999999999999999999999999999 99999      9999976                          


Q ss_pred             ------------------------CCCeEcCCCCCCHHHHHHHHHHHhcCh
Q 023800           99 ------------------------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (277)
Q Consensus        99 ------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~  125 (277)
                                              |||+|||+||.++.+|+++++++|.+.
T Consensus       194 ~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          194 ADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             HHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence                                    689999999999999999999998653

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=99.84  E-value=3.9e-21  Score=162.19  Aligned_cols=111  Identities=21%  Similarity=0.345  Sum_probs=99.0

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCC--CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      +++||+|+++|||++.|+..|+++|+.++  |+++++| +++ +|+++.|+.+.+|..+++.  .+||+|+||||..+..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~   94 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIP   94 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHH
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccCHh
Confidence            45799999999999999999999999976  8999999 887 9999999999999999873  5799999999942455


Q ss_pred             hhhcCHHHHHHHHHHHHcCC-cEEEEchhhHHhhhhCCCCC
Q 023800          237 AFAKSKKLVNMLKKQKESNR-PYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~-~i~aiC~G~~~lLa~aGlL~  276 (277)
                      .+..++++.+||  ++++++ +|++||+|++ +|+++|||+
T Consensus        95 ~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~-lLa~AGLL~  132 (236)
T 3bhn_A           95 AALQDENFMSAL--KLDPSRQLIGSICAGSF-VLHELGLLK  132 (236)
T ss_dssp             HHHTCHHHHHHC--CCCTTTCEEEEETTHHH-HHHHTTTTT
T ss_pred             hhccCHHHHHHH--HhCCCCCEEEEEcHHHH-HHHHcCCCC
Confidence            577899999999  667777 9999999999 999999997

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.84  E-value=6.8e-21  Score=161.49  Aligned_cols=116  Identities=17%  Similarity=0.248  Sum_probs=100.4

Q ss_pred             CCeEEEEec------------CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEE---------------------cccC
Q 023800          160 SPQILVPIA------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEIL---------------------ASCQ  206 (277)
Q Consensus       160 ~~kV~ill~------------~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~---------------------~~~g  206 (277)
                      |+||+|++.            +||+..|+..|+++|+++|++|+++|++++.++.                     ++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            478999987            3889999999999999999999999999873231                     1234


Q ss_pred             cEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC-------CCCC
Q 023800          207 VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLK  276 (277)
Q Consensus       207 ~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a-------GlL~  276 (277)
                      ..+.++..++++++++||+|+||||....+.++.++.+.+||+++++++|+|++||+|++ +|+++       |||+
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~-~La~a~~~~~g~gll~  158 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPL-LFDGLIDIKTTRPLIE  158 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTT
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhhccccCCceeC
Confidence            567778889998888999999999986556788999999999999999999999999999 99999       9986

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.84  E-value=6.2e-21  Score=162.05  Aligned_cols=115  Identities=18%  Similarity=0.261  Sum_probs=101.2

Q ss_pred             CCeEEEEec------------CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEE---c-------------------cc
Q 023800          160 SPQILVPIA------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEIL---A-------------------SC  205 (277)
Q Consensus       160 ~~kV~ill~------------~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~---~-------------------~~  205 (277)
                      |+||+|++.            +|++..|+..|+++|+++|++|+++|++++ ++.   +                   ..
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~   81 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF   81 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence            468999997            689999999999999999999999999987 432   1                   23


Q ss_pred             CcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC-------CCC
Q 023800          206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-------LLK  276 (277)
Q Consensus       206 g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG-------lL~  276 (277)
                      |..+.++..++++++++||+|+||||......+..++.+.+||+++++++++|++||+|++ +||++|       ||+
T Consensus        82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~ag~~~~g~~lL~  158 (243)
T 1rw7_A           82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-IFDGLTDKKTGRPLIE  158 (243)
T ss_dssp             HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTT
T ss_pred             HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHH-HHHhcCcccCCceeeC
Confidence            6678888899988777899999999976556678899999999999999999999999999 999999       986

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.83  E-value=2e-20  Score=169.83  Aligned_cols=116  Identities=22%  Similarity=0.344  Sum_probs=105.6

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc---------------eEEcccCcEEEeCcchhhhccCCc
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL---------------EILASCQVKLVADMLIDEAAKLSY  223 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~---------------~v~~~~g~~i~~~~~~~~~~~~~~  223 (277)
                      +++||+|+++|||+..|+..|+++|+++|++++++|+++++               .+.++.|..+.++..++++++++|
T Consensus        11 ~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   90 (396)
T 3uk7_A           11 NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKY   90 (396)
T ss_dssp             CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGC
T ss_pred             cCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccC
Confidence            46899999999999999999999999999999999998651               245677999999999999877889


Q ss_pred             cEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       224 D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      |+|+||||.. ...+..++.+.+||+++++++|+|++||+|++ +|+++|||+
T Consensus        91 D~livpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~-~La~aGlL~  141 (396)
T 3uk7_A           91 DGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICHGQL-ILAAADTVN  141 (396)
T ss_dssp             SEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEETTTHH-HHHHTTCCT
T ss_pred             CEEEECCCcc-hhhcccCHHHHHHHHHHHHcCCEEEEECchHH-HHHhccccC
Confidence            9999999974 55678899999999999999999999999999 999999997

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.83  E-value=8.6e-21  Score=160.10  Aligned_cols=113  Identities=24%  Similarity=0.426  Sum_probs=97.3

Q ss_pred             CCCeEEEEec-----CCCchhhHHHHHHHHHhCCCeEEEEeeCCCc-eE---------EcccCcEEEeC-------cchh
Q 023800          159 NSPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL-EI---------LASCQVKLVAD-------MLID  216 (277)
Q Consensus       159 ~~~kV~ill~-----~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v---------~~~~g~~i~~~-------~~~~  216 (277)
                      .++||+|+++     |||+..|++.|+++|+++|++|+++|+++++ ++         .++.|+.+.++       ..++
T Consensus         5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~   84 (232)
T 1vhq_A            5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   84 (232)
T ss_dssp             -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHH
Confidence            3579999999     9999999999999999999999999999862 13         67788888887       7788


Q ss_pred             hhccCCccEEEEcCCcchHHhh----------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          217 EAAKLSYDLIVLPGGLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       217 ~~~~~~~D~livpGG~~~~~~~----------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ++++++||+|+||||....+.+          +.++.+.+||+++++++++|++||+|++ +||++
T Consensus        85 ~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~a  149 (232)
T 1vhq_A           85 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKI  149 (232)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHH
T ss_pred             HcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHH
Confidence            8766789999999997532212          2489999999999999999999999999 89998

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.83  E-value=2.1e-21  Score=164.95  Aligned_cols=122  Identities=20%  Similarity=0.271  Sum_probs=103.4

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceee--c-------------------CCCCEEecCcccccccc--C------CCcc
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVD--A-------------------CHGVKIVADALVSNCRD--A------CGMP   52 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~--~-------------------~~g~~v~~d~~~~~~~~--~------gG~~   52 (277)
                      |++.|+++|+++||+|+++|++++.++.  +                   +.|+.+.++..+++++.  +      ||+.
T Consensus        30 E~~~p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~  109 (243)
T 1rw7_A           30 EALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHG  109 (243)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCC
Confidence            8999999999999999999998742231  1                   23667888888887642  1      8865


Q ss_pred             chhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC-------CCCCCC---------------------------
Q 023800           53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG-------LLKGLK---------------------------   98 (277)
Q Consensus        53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG-------ll~g~~---------------------------   98 (277)
                      ++..+..++.+.+||++++++|++|+|||+|++ +|+++|       ||+||+                           
T Consensus       110 ~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~ag~~~~g~~lL~G~~~T~~~~~~e~~~~~~~~~p~~~~~~l~  188 (243)
T 1rw7_A          110 TLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-IFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVE  188 (243)
T ss_dssp             HHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHH
T ss_pred             chhhcccCHHHHHHHHHHHHcCCEEEEECCCHH-HHHhcCcccCCceeeCCcEEeecCCHHHhhccccccccccccccHH
Confidence            556688899999999999999999999999999 999999       999863                           


Q ss_pred             -----------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                                             |||+|||+|++++++|++++|+++..
T Consensus       189 ~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          189 DVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             HHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             HHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence                                   67999999999999999999998854

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.82  E-value=3.2e-20  Score=157.51  Aligned_cols=116  Identities=25%  Similarity=0.292  Sum_probs=98.9

Q ss_pred             CCeEEEEecC------------CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc---------------------cC
Q 023800          160 SPQILVPIAN------------GSEEMEAVIIIDILRRAKANVVVASVADKLEILAS---------------------CQ  206 (277)
Q Consensus       160 ~~kV~ill~~------------g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~---------------------~g  206 (277)
                      |+||+|++.+            ||+..|+..|+++|+++|++|+++|++++.++...                     .+
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   88 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM   88 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence            5799999986            88999999999999999999999999987333211                     12


Q ss_pred             cEEEe-CcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC------CCCC
Q 023800          207 VKLVA-DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH------GLLK  276 (277)
Q Consensus       207 ~~i~~-~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a------GlL~  276 (277)
                      ..+.. +..++++++++||+|+||||......++.++.+.+||+++++++|+|++||+|++ +|+++      |||+
T Consensus        89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~-~La~a~~~~g~gll~  164 (247)
T 3n7t_A           89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPA-MLPGIHDENGDSVIK  164 (247)
T ss_dssp             HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGCBCTTSSBTTT
T ss_pred             HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHhhcccCCcccc
Confidence            23455 7788888888999999999985446688999999999999999999999999999 99999      9986

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.82  E-value=1.3e-19  Score=173.06  Aligned_cols=115  Identities=15%  Similarity=0.215  Sum_probs=107.1

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ++||+|+++||++..|+..++++|+.+|++++++|++++ +|+++.|+.+.++..+++++..+||+|+||||......+.
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~  612 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS  612 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhc
Confidence            479999999999999999999999999999999999998 8999999999999999988777899999999964566678


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC-CCCC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLK  276 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a-GlL~  276 (277)
                      .++.+.+||+++++++|+|++||+|++ +|+++ ||.+
T Consensus       613 ~~~~l~~~Lr~~~~~gK~IaAIC~G~~-lLA~AlGL~~  649 (715)
T 1sy7_A          613 KNGRALHWIREAFGHLKAIGATGEAVD-LVAKAIALPQ  649 (715)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHHHCCTT
T ss_pred             cCHHHHHHHHHHHhCCCEEEEECHHHH-HHHHccCcHh
Confidence            899999999999999999999999999 99999 9843

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.81  E-value=1.1e-20  Score=164.28  Aligned_cols=124  Identities=16%  Similarity=0.188  Sum_probs=104.3

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeec--------------CC---CCEEecCcccccc-------ccC------CC
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDA--------------CH---GVKIVADALVSNC-------RDA------CG   50 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~--------------~~---g~~v~~d~~~~~~-------~~~------gG   50 (277)
                      +|++.|+++|+++||+|+++|+++ .+++.              .+   |+.+.++..++++       ..+      ||
T Consensus        76 ~E~~~p~~vL~~ag~~v~i~S~~g-~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG  154 (291)
T 1n57_A           76 IETLLPLYHLHAAGFEFEVATISG-LMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGG  154 (291)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSS-CCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCC-CcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCC
Confidence            389999999999999999999997 45542              22   7788888888873       222      88


Q ss_pred             ccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC----CCCCCC----------------------------
Q 023800           51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG----LLKGLK----------------------------   98 (277)
Q Consensus        51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG----ll~g~~----------------------------   98 (277)
                      +...+.++.++.+++||++++++|++|+|||+|++ +|++++    ||+||+                            
T Consensus       155 ~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~-~La~a~~~~GLL~Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~le~  233 (291)
T 1n57_A          155 HGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGE  233 (291)
T ss_dssp             GGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHH
T ss_pred             cchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHH-HHHhhcccCccCCCCEEEeCCCHHHhhhccccccccccchhHHH
Confidence            53333788999999999999999999999999999 888885    998865                            


Q ss_pred             --------------------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           99 --------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        99 --------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                                          |||+|||+|++++++|++++|+++.|++
T Consensus       234 ~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~  281 (291)
T 1n57_A          234 ELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAY  281 (291)
T ss_dssp             HHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCch
Confidence                                5689999999999999999999998864

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.80  E-value=9.8e-20  Score=158.37  Aligned_cols=115  Identities=21%  Similarity=0.280  Sum_probs=100.0

Q ss_pred             CCeEEEEecC--------------CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc--------------cc---CcE
Q 023800          160 SPQILVPIAN--------------GSEEMEAVIIIDILRRAKANVVVASVADKLEILA--------------SC---QVK  208 (277)
Q Consensus       160 ~~kV~ill~~--------------g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~--------------~~---g~~  208 (277)
                      .+||+|++.+              ||++.|+..|+++|+++|++|+++|++++ ++..              ..   |..
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~  126 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  126 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccce
Confidence            4799999985              79999999999999999999999999988 6652              22   778


Q ss_pred             EEeCcchhhh-----ccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC----CCC
Q 023800          209 LVADMLIDEA-----AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG----LLK  276 (277)
Q Consensus       209 i~~~~~~~~~-----~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG----lL~  276 (277)
                      +.++..++++     ++++||+||||||......+..++.+.+||+++++++++|++||+|++ +|+++|    ||+
T Consensus       127 l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~-~La~a~~~~GLL~  202 (291)
T 1n57_A          127 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLN  202 (291)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTT
T ss_pred             ecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHH-HHHhhcccCccCC
Confidence            8889888884     467899999999975443678899999999999999999999999999 899875    886

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.78  E-value=4.3e-20  Score=155.78  Aligned_cols=135  Identities=26%  Similarity=0.325  Sum_probs=107.2

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCc-ee---------ecCCCCEEecC-------cccccccc---C-----CCccchh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQL-RV---------DACHGVKIVAD-------ALVSNCRD---A-----CGMPGAT   55 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~-~v---------~~~~g~~v~~d-------~~~~~~~~---~-----gG~~~~~   55 (277)
                      .|++.|+++|+++||+|+++|++++. ++         ++++|+.+.++       ..+++++.   +     ||+....
T Consensus        25 ~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~  104 (232)
T 1vhq_A           25 HEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAK  104 (232)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHH
Confidence            38899999999999999999998732 23         77889888887       77777532   2     7754322


Q ss_pred             ----------ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCC-CCC--------------------------
Q 023800           56 ----------NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLK-GLK--------------------------   98 (277)
Q Consensus        56 ----------~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~-g~~--------------------------   98 (277)
                                .++.++.+.+||++++++|++|++||+|++ +|+++  |+ ||+                          
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~a--L~~Gr~~Tth~~~~~~~~l~~~g~~~~~~~~~  181 (232)
T 1vhq_A          105 NLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKI--FDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVD  181 (232)
T ss_dssp             TSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHH--CSSCCEECCCSCHHHHHHHHHTTCEECCCCTT
T ss_pred             HHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHH--hcCCCEEeccCCHHHHHHHHHcCCEEecCCCC
Confidence                      223589999999999999999999999999 99999  78 887                          


Q ss_pred             ----C--CCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCc
Q 023800           99 ----D--GKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDE  144 (277)
Q Consensus        99 ----d--g~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~  144 (277)
                          |  ||+|||+    +++|++++++++.|++.+  +++.++|.+..+++
T Consensus       182 ~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~--~~~~~~~~~~~~~~  227 (232)
T 1vhq_A          182 DIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL--VSRVLVLAEEGGSH  227 (232)
T ss_dssp             CCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH--HHHHHHHHC-----
T ss_pred             ceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH--HHHHHHhhhccCCc
Confidence                3  9999996    789999999999998754  77777887777665

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.74  E-value=3.8e-19  Score=150.42  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=98.7

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCC----------ceeecCCCCEEecC-------cccccccc---C-----CCccchh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQ----------LRVDACHGVKIVAD-------ALVSNCRD---A-----CGMPGAT   55 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~----------~~v~~~~g~~v~~d-------~~~~~~~~---~-----gG~~~~~   55 (277)
                      +|++.|+++|+++||+|+++|++++          .+++++.|+.+.+|       ..+++++.   +     ||.+...
T Consensus        42 ~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~  121 (242)
T 3l3b_A           42 REAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAK  121 (242)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhh
Confidence            3889999999999999999999874          25778889998888       67887642   2     7754332


Q ss_pred             c-----------cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC-CCCCCC-------------------------
Q 023800           56 N-----------LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG-LLKGLK-------------------------   98 (277)
Q Consensus        56 ~-----------~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG-ll~g~~-------------------------   98 (277)
                      +           ++.++.+++||++++++||+|++||+|++ +|+++| ||+||+                         
T Consensus       122 ~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~-~La~ag~lL~Gr~~T~~~~~~~~l~~~Ga~~~~~~~~~  200 (242)
T 3l3b_A          122 NFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPA-VVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIK  200 (242)
T ss_dssp             HHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHH-HHHHHHTTTCCCEECCCC----CHHHHTCEECCCCTTC
T ss_pred             hhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhCcccCCCEEEecCChHHHHHHCCCEEEcCCCCe
Confidence            2           36689999999999999999999999999 999999 999999                         


Q ss_pred             ---C--CCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           99 ---D--GKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        99 ---d--g~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                         |  ||+|||+++.    ++..+.|.+.|.+
T Consensus       201 vVvD~~g~liTs~a~~----~~~~~~e~~~g~~  229 (242)
T 3l3b_A          201 SVKDDVNRIFSCSAYM----RNDSLYNVYLGIQ  229 (242)
T ss_dssp             CEEETTTTEEEECGGG----SCCCHHHHHHHHH
T ss_pred             EEEECCCCEEECcCcc----cCCCHHHHHhCHH
Confidence               6  9999999775    3445666665543

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.69  E-value=1.6e-16  Score=149.70  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=111.0

Q ss_pred             ChhHHHHHhhcccccccCCCchh-----hcccCcc--cc-ccCCCCeEEEEecCC-CchhhHHHHHHHHHhCCCeEEEEe
Q 023800          124 GKGKADEVSGARVMRANHGDEFT-----IAEFNPV--QW-TFDNSPQILVPIANG-SEEMEAVIIIDILRRAKANVVVAS  194 (277)
Q Consensus       124 g~~~a~~v~~~~~~~~~~~~~~~-----~~~~~~~--~~-~~~~~~kV~ill~~g-~~~~e~~~~~~~l~~a~~~v~~vs  194 (277)
                      .++.++.|++.+.........-.     ...++.+  .+ ++ +++||+||+.+| ++..|+..+.++|+++|.++.++|
T Consensus       494 d~~~~~~va~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l-~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVs  572 (688)
T 3ej6_A          494 SNDVAKRVAVALGLEAPQPDPTYYHNNVTRGVSIFNESLPTI-ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIA  572 (688)
T ss_dssp             CHHHHHHHHHHHTSCCCSCCTTSCCCCCCSSCCSSSSCCSCC-TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCCCCCc-cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEe
Confidence            46788888888877643322111     1111111  11 12 468999999999 999999999999999999999999


Q ss_pred             eCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-------HHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHH
Q 023800          195 VADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-------AQAFAKSKKLVNMLKKQKESNRPYGAICASPAL  267 (277)
Q Consensus       195 ~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-------~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~  267 (277)
                      ++.+      .|    +|.+++++++.+||+|+||||..+       ++.++.++++++|++++++++|+|++||+|++ 
T Consensus       573 p~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~-  641 (688)
T 3ej6_A          573 EYLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKK-  641 (688)
T ss_dssp             SSCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHH-
T ss_pred             CCCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHH-
Confidence            9875      24    799999998889999999999654       25688899999999999999999999999999 


Q ss_pred             hhhhCCC
Q 023800          268 VLEPHGL  274 (277)
Q Consensus       268 lLa~aGl  274 (277)
                      +|.++|+
T Consensus       642 lL~~AGI  648 (688)
T 3ej6_A          642 ALQSIGV  648 (688)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9999997

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.65  E-value=5.1e-16  Score=146.76  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=112.6

Q ss_pred             cChhHHHHHhhcccccccCCC-chhhc----ccCc---cccccCCCCeEEEEec--CCCchhhHHHHHHHHHhCCCeEEE
Q 023800          123 YGKGKADEVSGARVMRANHGD-EFTIA----EFNP---VQWTFDNSPQILVPIA--NGSEEMEAVIIIDILRRAKANVVV  192 (277)
Q Consensus       123 ~g~~~a~~v~~~~~~~~~~~~-~~~~~----~~~~---~~~~~~~~~kV~ill~--~g~~~~e~~~~~~~l~~a~~~v~~  192 (277)
                      ..++.++.|++.+........ .+...    .++.   ..+.+ .++||+|++.  +|++..|+..+.++|+++|.++.+
T Consensus       485 ~d~~~~~~v~~~l~~~~p~~~~~~~~~~~~~~ls~~~~~~~~l-~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~v  563 (688)
T 2iuf_A          485 ISDNLATRVASAIGVEAPKPNSSFYHDNTTAHIGAFGEKLAKL-DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVV  563 (688)
T ss_dssp             HCHHHHHHHHTTTTCCCCCCCGGGCCCCCCTTCSSSSSCCSCC-TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred             hCHHHHHHHHHHhCCCCCCCCccCCCCCCCcccccCcCCCCCC-CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEE
Confidence            346788889988876432221 11000    1111   11122 3589999999  999999999999999999999999


Q ss_pred             EeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch----------------HHhhhcCHHHHHHHHHHHHcCC
Q 023800          193 ASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG----------------AQAFAKSKKLVNMLKKQKESNR  256 (277)
Q Consensus       193 vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~----------------~~~~~~~~~~~~~l~~~~~~~~  256 (277)
                      +|++.+ .         .+|.++++++..+||+|+||||..+                .+.++.++++++||++++++||
T Consensus       564 Vs~~~g-~---------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gK  633 (688)
T 2iuf_A          564 VAERXA-N---------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGK  633 (688)
T ss_dssp             EESSCC-T---------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTC
T ss_pred             EeccCC-c---------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCC
Confidence            999765 2         7788899888889999999999755                5668889999999999999999


Q ss_pred             cEEEEchhhHHhhhhCCCCC
Q 023800          257 PYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       257 ~i~aiC~G~~~lLa~aGlL~  276 (277)
                      +|++||+|++ +|.++||..
T Consensus       634 pIaAIc~ap~-vL~~aGi~~  652 (688)
T 2iuf_A          634 TVGALGSGSD-ALESGQISS  652 (688)
T ss_dssp             EEEEEGGGHH-HHHHTTCCT
T ss_pred             EEEEECchHH-HHHHcCCCC
Confidence            9999999999 999999863

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.64  E-value=5.6e-16  Score=148.06  Aligned_cols=121  Identities=12%  Similarity=0.060  Sum_probs=105.8

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHhC
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQASD   73 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~~   73 (277)
                      |+..|+++|+++||+|.++|+++ .+|+++.|+.+.+|..+++++.   +     ||..+.+.+..++.+++||++++++
T Consensus       549 El~~p~dvL~~AG~~V~ivS~~g-g~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~  627 (715)
T 1sy7_A          549 AYDAAYAAISANQAIPLVIGPRR-SKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGH  627 (715)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCS-SCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCEEEEEECCC-CceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhC
Confidence            78899999999999999999997 5899999999999999988642   2     7754566788899999999999999


Q ss_pred             CCEEEEEchhHHHHHHHc-CCCCCCC--------CCCeEcCCCCC------------CHHHHHHHHHHHhcC
Q 023800           74 GRLYAAICVFLAVALGSW-GLLKGLK--------DGKVVTTRGPG------------TPMEFVVALVEQLYG  124 (277)
Q Consensus        74 g~~i~aiC~g~~~~La~a-Gll~g~~--------dg~~iT~~g~~------------~~~~~a~~li~~l~g  124 (277)
                      ||+|++||+|++ +|+++ ||.+-+.        |||+||++|+.            +..+|+..+++.+..
T Consensus       628 gK~IaAIC~G~~-lLA~AlGL~~L~~aGa~~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          628 LKAIGATGEAVD-LVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             TCEEEEETTHHH-HHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             CCEEEEECHHHH-HHHHccCcHhHHhcCCCcEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence            999999999999 99999 9865332        99999999996            667899999998864

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.44  E-value=3.8e-13  Score=127.72  Aligned_cols=116  Identities=10%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|++.|+++|+++|++|.++|+++ .+|++++|..+.+|.++++++.   +     ||  +...++.++.+++||+++++
T Consensus       614 ~El~~pvdaLr~AG~~V~vVS~~~-g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~Lr~d~~vl~~Vre~~~  690 (753)
T 3ttv_A          614 ADLLAILKALKAKGVHAKLLYSRM-GEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADIADNGDANYYLMEAYK  690 (753)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESSS-SEEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEcCC-CeEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHhhhCHHHHHHHHHHHh
Confidence            488999999999999999999997 5899999999999999998764   2     77  67788999999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      ++|+|+|||+|++ +|+++||-. ..|..++++....  -+++-.+++.+.
T Consensus       691 ~gKpIAAIC~Gp~-lLa~AGL~~-~~~~g~~~~~~~~--~~~~~~~~~~~~  737 (753)
T 3ttv_A          691 HLKPIALAGDARK-FKATIKIAD-QGEEGIVEADSAD--GSFMDELLTLMA  737 (753)
T ss_dssp             TTCCEEEEGGGGG-GGGGGTCCT-TCBTTEEEESSCC--HHHHHHHHHHHH
T ss_pred             cCCeEEEECchHH-HHHHcCCCC-CCCCcEEEcCcch--HHHHHHHHHHHH
Confidence            9999999999999 999999844 2345688765432  345666666554

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.22  E-value=3.8e-11  Score=113.70  Aligned_cols=108  Identities=20%  Similarity=0.111  Sum_probs=89.4

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccc----------------hhc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPG----------------ATN   56 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~----------------~~~   56 (277)
                      +|+..|++.|+++|++|.++|+..+.          .+|.++++.+..        ||..+                +..
T Consensus       545 ~E~~~~~~~L~~aG~~V~vVs~~~g~----------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~  614 (688)
T 2iuf_A          545 AQGAKLQVALSSVGVDVVVVAERXAN----------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGAST  614 (688)
T ss_dssp             HHHHHHHHHHGGGTCEEEEEESSCCT----------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEeccCCc----------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhh
Confidence            38899999999999999999997531          677777775432        77656                677


Q ss_pred             cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      ++.++.+++||+++++.||+|+|||+|++ +|.++|+..  .|.++||++.+  .-+|+..+++.+.
T Consensus       615 L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~--~d~GVvts~~~--~~~f~~~fi~~la  676 (688)
T 2iuf_A          615 LYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISS--ERQGVYTGKNA--GDAFAKDIKSGLS  676 (688)
T ss_dssp             SSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCT--TSTTEEEESSS--SHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCC--CCCCEEEcCCc--cHHHHHHHHHHHH
Confidence            89999999999999999999999999999 999999964  46889999888  3456677776653

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.21  E-value=1.7e-11  Score=101.41  Aligned_cols=93  Identities=26%  Similarity=0.337  Sum_probs=73.6

Q ss_pred             CCCeEEEEecCCCch-hhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSEE-MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~-~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      |++||+|+.+++++. .+   +.++|+++|+++.+++..                   +  +..++|.|+||||....+.
T Consensus         1 m~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~--~~~~~d~lil~Gg~~~~~~   56 (213)
T 3d54_D            1 MKPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------D--KLDDYELIILPGGFSYGDY   56 (213)
T ss_dssp             CCCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------C--CCSSCSEEEECEECGGGGC
T ss_pred             CCcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------C--CcccCCEEEECCCCchhhh
Confidence            357999999999874 44   489999999999888642                   1  1246899999998532222


Q ss_pred             -----hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          238 -----FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       238 -----~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                           ...++.+.+||+++.+++++|.+||.|.+ +|+++|+|+
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~q-lLa~aGll~   99 (213)
T 3d54_D           57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQ-ILIEMGLLK   99 (213)
T ss_dssp             SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHH-HHHHHTSSC
T ss_pred             hccccccccHHHHHHHHHHHHCCCEEEEECHHHH-HHHHcCCCC
Confidence                 12356789999999999999999999999 899999985

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.01  E-value=1.9e-09  Score=101.94  Aligned_cols=104  Identities=22%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccc-------hhccccChHHHHH
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPG-------ATNLKESEVLESI   66 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~-------~~~~~~~~~~~~~   66 (277)
                      |+..|++.|+++|++|.++|+..+      .|    +|.++++++..        ||..+       ++.++.++.+++|
T Consensus       553 El~~p~~aL~~aGa~V~vVsp~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~f  622 (688)
T 3ej6_A          553 KAKALKEQLEKDGLKVTVIAEYLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQI  622 (688)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHH
Confidence            789999999999999999999863      24    78888876532        77544       2678999999999


Q ss_pred             HHHHHhCCCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           67 VKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        67 l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      ++++++.+|+|++||+|++ +|.++|+-.  .|..+++.    ...+++-.+++.+
T Consensus       623 V~e~~~hgKpIAAIchgp~-lL~~AGI~~--~~~g~~~~----~~~~~~~~~~~~~  671 (688)
T 3ej6_A          623 LTDGYRWGKPVAAVGSAKK-ALQSIGVEE--KEAGVYAG----AQDEVIKGVEEGL  671 (688)
T ss_dssp             HHHHHHTTCCEEEEGGGHH-HHHHTTCCS--SSTTEEEE----CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEeCccHH-HHHHcCCCC--CCCeEEec----CcHHHHHHHHHHH
Confidence            9999999999999999999 999999843  24457762    2344555555443

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.46  E-value=5.4e-07  Score=73.23  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-hhh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AFA  239 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~~~  239 (277)
                      +||+|+-+.+ +..+   ..+.|+++|.++.+++..                   +++  .++|.|++|||..... .++
T Consensus         2 m~I~il~~~~-~~~~---~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~~   56 (196)
T 2nv0_A            2 LTIGVLGLQG-AVRE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRLI   56 (196)
T ss_dssp             CEEEEECSSS-CCHH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHHH
T ss_pred             cEEEEEEccC-CcHH---HHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHHh
Confidence            6899986522 2222   358899999988777431                   122  3689999999964322 223


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+..+.++|+++.+++++|.+||.|.. +|+++
T Consensus        57 ~~~~~~~~i~~~~~~~~pilgIC~G~q-~l~~~   88 (196)
T 2nv0_A           57 DTYQFMEPLREFAAQGKPMFGTCAGLI-ILAKE   88 (196)
T ss_dssp             HHTTCHHHHHHHHHTTCCEEEETHHHH-HHSBC
T ss_pred             hhHHHHHHHHHHHHCCCcEEEECHHHH-HHHHH
Confidence            334568899999999999999999999 89874

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.41  E-value=5.1e-07  Score=74.81  Aligned_cols=87  Identities=21%  Similarity=0.262  Sum_probs=62.9

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-hh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~~  238 (277)
                      .++|+|+.+++    .+...++.|+++|.++.+++..                   +++  +++|.|++|||..... .+
T Consensus        23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~Dglil~GG~~~~~~~~   77 (219)
T 1q7r_A           23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS-------------------EQL--EGLDGLVLPGGESTTMRRL   77 (219)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG-------------------GGG--TTCSEEEECCCCHHHHHHH
T ss_pred             CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH-------------------HHH--hhCCEEEECCCChHHHHHH
Confidence            46899997654    1223468999999988887531                   122  4689999999964222 22


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+..+.++|+++.+++++|.+||.|.. +|+.+
T Consensus        78 ~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lL~~~  110 (219)
T 1q7r_A           78 IDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAKR  110 (219)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEEE
T ss_pred             hhhhHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            2244567899999999999999999999 89863

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.37  E-value=7e-07  Score=73.35  Aligned_cols=88  Identities=18%  Similarity=0.251  Sum_probs=62.6

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-h
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-A  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~  237 (277)
                      +.+||+|+-+++    .+....+.|+++|.++.+++..                   +++  .++|.|++|||..... .
T Consensus        19 ~~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~   73 (208)
T 2iss_D           19 SHMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP-------------------EQL--DMVDGLILPGGESTTMIR   73 (208)
T ss_dssp             -CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECSSCHHHHHH
T ss_pred             CCcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCcHHHHHh
Confidence            347899996643    4455678888899988777421                   112  3589999999953221 1


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +..+..+.++|+++.+++++|.+||.|.. +|+++
T Consensus        74 ~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~  107 (208)
T 2iss_D           74 ILKEMDMDEKLVERINNGLPVFATCAGVI-LLAKR  107 (208)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEETHHHH-HHEEE
T ss_pred             hhhhhhHHHHHHHHHHCCCeEEEECHHHH-HHHHH
Confidence            22233467899999999999999999999 89874

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.36  E-value=1.6e-06  Score=70.69  Aligned_cols=88  Identities=24%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ++||+|+-+. +..  +....+.|+++|.++.+++..                   ++  .+++|.|++||+........
T Consensus         2 ~~~I~iid~~-~~~--~~~~~~~l~~~G~~~~~~~~~-------------------~~--l~~~d~lil~G~g~~~~~~~   57 (200)
T 1ka9_H            2 RMKALLIDYG-SGN--LRSAAKALEAAGFSVAVAQDP-------------------KA--HEEADLLVLPGQGHFGQVMR   57 (200)
T ss_dssp             -CEEEEECSS-CSC--HHHHHHHHHHTTCEEEEESST-------------------TS--CSSCSEEEECCCSCHHHHHH
T ss_pred             ccEEEEEeCC-Ccc--HHHHHHHHHHCCCeEEEecCh-------------------HH--cccCCEEEECCCCcHHHHHH
Confidence            4689888543 222  233579999999998877421                   11  23689999999422222222


Q ss_pred             c--CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 K--SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~--~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .  +..+.++|+++.+++++|.+||.|.. +|+++
T Consensus        58 ~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   91 (200)
T 1ka9_H           58 AFQESGFVERVRRHLERGLPFLGICVGMQ-VLYEG   91 (200)
T ss_dssp             TTSSSCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred             HHHhcCHHHHHHHHHHcCCeEEEEcHHHH-HHHHh
Confidence            1  24578899999999999999999999 89987

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.31  E-value=2.4e-06  Score=71.60  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      +||+++..+.++....  ..+.++..|++++++....+.+        + |+    +  ..++|+|||+||...+.....
T Consensus         1 m~i~vi~h~~~e~~g~--~~~~l~~~g~~~~~~~~~~~~~--------~-p~----~--~~~~d~lii~GGp~~~~~~~~   63 (236)
T 3l7n_A            1 MRIHFILHETFEAPGA--YLAWAALRGHDVSMTKVYRYEK--------L-PK----D--IDDFDMLILMGGPQSPSSTKK   63 (236)
T ss_dssp             CEEEEEECCTTSCCHH--HHHHHHHTTCEEEEEEGGGTCC--------C-CS----C--GGGCSEEEECCCSSCTTCCTT
T ss_pred             CeEEEEeCCCCCCchH--HHHHHHHCCCeEEEEeeeCCCC--------C-CC----C--ccccCEEEECCCCCCcccccc
Confidence            4889998877766553  4467889999999997754310        1 11    1  246899999999643221111


Q ss_pred             ----C--HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 ----S--KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ----~--~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                          .  ....++|+++.+.+++|.+||-|.. +|+.+
T Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Q-lL~~~  100 (236)
T 3l7n_A           64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQ-LMGVA  100 (236)
T ss_dssp             TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHH-HHHHH
T ss_pred             cCcccchHHHHHHHHHHHHcCCCEEEEchHHH-HHHHH
Confidence                1  3478999999999999999999999 88863

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.31  E-value=1e-06  Score=71.22  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=63.3

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc-hHHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG-GAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~~~  238 (277)
                      .++|+|+..++    .+....+.|+++|.++.+++..                   +++  +++|.|++|||.. ....+
T Consensus         2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~dglil~GG~~~~~~~~   56 (191)
T 2ywd_A            2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------EHL--EGLKALIVPGGESTTIGKL   56 (191)
T ss_dssp             -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------GGG--TTCSEEEECSSCHHHHHHH
T ss_pred             CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------hhh--ccCCEEEECCCChhhhHHh
Confidence            36799998765    3446789999999888776421                   112  3589999999942 22323


Q ss_pred             hcCHHHHHHHHHHHHcC-CcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESN-RPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~-~~i~aiC~G~~~lLa~a  272 (277)
                      ..+..+.++|+++.+++ ++|.+||.|.. +|+.+
T Consensus        57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q-~l~~~   90 (191)
T 2ywd_A           57 AREYGIEDEVRKRVEEGSLALFGTCAGAI-WLAKE   90 (191)
T ss_dssp             HHHTTHHHHHHHHHHTTCCEEEEETHHHH-HHEEE
T ss_pred             hhhhhHHHHHHHHHHCCCCeEEEECHHHH-HHHHH
Confidence            32356788999999999 99999999999 89874

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.28  E-value=2.2e-06  Score=72.41  Aligned_cols=95  Identities=14%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-hh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~~  238 (277)
                      +++|+|+..+.++..+..  .++|++.|++++++....+.+.         +    .+  ..++|.||||||..... ..
T Consensus         3 ~~~vliiqh~~~e~~~~i--~~~l~~~G~~v~v~~~~~~~~~---------p----~~--~~~~d~lIl~GGp~~~~d~~   65 (250)
T 3m3p_A            3 LKPVMIIQFSASEGPGHF--GDFLAGEHIPFQVLRMDRSDPL---------P----AE--IRDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             CCCEEEEESSSSCCCHHH--HHHHHHTTCCEEEEEGGGTCCC---------C----SC--GGGSSEEEECCCSSCTTSCC
T ss_pred             CCeEEEEECCCCCCHHHH--HHHHHHCCCeEEEEeccCCCcC---------c----Cc--cccCCEEEECCCCCcccccc
Confidence            468999987777766644  4568999999999876543110         1    11  24689999999853222 12


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .......++|+++.+.+++|.+||.|.. +|+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-ll~~~   98 (250)
T 3m3p_A           66 PWMPTLLALIRDAVAQRVPVIGHCLGGQ-LLAKA   98 (250)
T ss_dssp             TTHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            2235678899999999999999999999 78763

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=98.03  E-value=1.4e-05  Score=64.31  Aligned_cols=85  Identities=18%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~  242 (277)
                      |+|+=+.+..   ...+.+.|+++|.++.++..+.                .++++...++|.|++|||. .+.   ...
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~---~~~   59 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLE---NTG   59 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTT---CCT
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chh---hhh
Confidence            6666544333   3477789999999998876532                2233322469999999995 332   244


Q ss_pred             HHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          243 KLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       243 ~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ...++++++.+.++++.+||.|.. +|+.
T Consensus        60 ~~~~~i~~~~~~~~PilGIC~G~Q-~l~~   87 (189)
T 1wl8_A           60 NCEKVLEHYDEFNVPILGICLGHQ-LIAK   87 (189)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHH-HHHH
T ss_pred             hHHHHHHHHhhCCCeEEEEcHHHH-HHHH
Confidence            568888877789999999999999 8886

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.00  E-value=1.7e-05  Score=80.76  Aligned_cols=99  Identities=13%  Similarity=0.203  Sum_probs=70.9

Q ss_pred             CCCeEEEEecCCCch-hhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-
Q 023800          159 NSPQILVPIANGSEE-MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-  236 (277)
Q Consensus       159 ~~~kV~ill~~g~~~-~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-  236 (277)
                      ..+||+|+.++|.+- .|+   ..+|+++|+++.++..+.           +..+.  .+  ..++|.|++|||....+ 
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~---~~A~~~aG~~~~~v~~~d-----------l~~~~--~~--l~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEM---AAAFHRAGFDAIDVHMSD-----------LLGGR--IG--LGNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHH---HHHHHHTTCEEEEEEHHH-----------HHTTS--CC--GGGCSEEEECCSCGGGGT
T ss_pred             CCCEEEEEecCCcCCHHHH---HHHHHHhCCceEEEeecc-----------cccCc--cc--HhhCCEEEECCCCcchhh
Confidence            357999999999875 664   457778999988775320           00000  11  24689999999864222 


Q ss_pred             ---------hhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhhhC-CCCC
Q 023800          237 ---------AFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPH-GLLK  276 (277)
Q Consensus       237 ---------~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa~a-GlL~  276 (277)
                               ....++.+.+.+++++ ++++++.+||.|.+ +|.++ |||.
T Consensus      1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllP 1157 (1303)
T 3ugj_A         1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIP 1157 (1303)
T ss_dssp             TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGST
T ss_pred             hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCC
Confidence                     1345677888899866 68999999999999 89999 9873

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=97.99  E-value=4.9e-06  Score=68.27  Aligned_cols=76  Identities=21%  Similarity=0.261  Sum_probs=54.5

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc-----cccChHHHHHHHHHHhCCCE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN-----LKESEVLESIVKKQASDGRL   76 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~-----~~~~~~~~~~l~~~~~~g~~   76 (277)
                      .+.+.|+++|+++.+++...                .+++++..   ||....+.     +..++.+.+||+++.+++++
T Consensus        18 ~~~~~l~~~g~~~~~~~~~~----------------~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p   81 (213)
T 3d54_D           18 DAYHALEINGFEPSYVGLDD----------------KLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKL   81 (213)
T ss_dssp             HHHHHHHTTTCEEEEECTTC----------------CCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCE
T ss_pred             HHHHHHHHCCCEEEEEecCC----------------CcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCE
Confidence            45889999999999887531                11222211   44211221     22457789999999999999


Q ss_pred             EEEEchhHHHHHHHcCCCCCC
Q 023800           77 YAAICVFLAVALGSWGLLKGL   97 (277)
Q Consensus        77 i~aiC~g~~~~La~aGll~g~   97 (277)
                      |.+||.|.+ +|+.+|+|+|+
T Consensus        82 ilgIC~G~q-lLa~aGll~g~  101 (213)
T 3d54_D           82 IMGICNGFQ-ILIEMGLLKGA  101 (213)
T ss_dssp             EEECHHHHH-HHHHHTSSCSE
T ss_pred             EEEECHHHH-HHHHcCCCCCC
Confidence            999999999 99999999973

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.98  E-value=9.4e-06  Score=67.40  Aligned_cols=86  Identities=20%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhC---CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-  236 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a---~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-  236 (277)
                      ++|+|+.+++.    +....++|+++   |.++..++.                   .+++  .++|.||+|||..... 
T Consensus         4 ~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~-------------------~~~l--~~~dglil~GG~~~~~~   58 (227)
T 2abw_A            4 ITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRN-------------------VHDL--GLCDGLVIPGGESTTVR   58 (227)
T ss_dssp             EEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECS-------------------HHHH--HTCSEEEECCSCHHHHH
T ss_pred             cEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcC-------------------cccc--ccCCEEEECCCcHHHHH
Confidence            57999877653    22457888888   766555421                   0222  3589999999963222 


Q ss_pred             hhhcC--HHHHHHHHHHHHc-CCcEEEEchhhHHhhhhC
Q 023800          237 AFAKS--KKLVNMLKKQKES-NRPYGAICASPALVLEPH  272 (277)
Q Consensus       237 ~~~~~--~~~~~~l~~~~~~-~~~i~aiC~G~~~lLa~a  272 (277)
                      .+..+  ..+.++|+++.+. +++|.+||.|.. +|+++
T Consensus        59 ~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           59 RCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence            22222  5688999999999 999999999999 89874

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.92  E-value=2.7e-05  Score=63.10  Aligned_cols=90  Identities=13%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800          163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK  242 (277)
Q Consensus       163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~  242 (277)
                      |+|+=..+..   ...+.+.|+++|.++.++..+.               ..++++...++|.|+++||........+.+
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~---------------~~~~~~~~~~~dglil~gG~~~~~~~~~~~   65 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDE---------------ISIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTT---------------SCHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCC---------------CCHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence            6666533322   2467789999999998886542               123333323689999987743332211122


Q ss_pred             HHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          243 KLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       243 ~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...++++++ +.++++.+||-|.. +|+.+
T Consensus        66 ~~~~~i~~~-~~~~PvLGIC~G~Q-lL~~~   93 (195)
T 1qdl_B           66 VSLDVIKYL-GKRTPILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             THHHHHHHH-TTTSCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHh-cCCCcEEEEehHHH-HHHHH
Confidence            345788874 78999999999999 88863

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.85  E-value=4.3e-05  Score=62.05  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCC-----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~-----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      +||+|+-++.-+..+   ..+.|++.|     .++.++..  .             +    +   .++|.|++||+....
T Consensus         1 m~I~iid~~~g~~~s---~~~~l~~~G~~~~~~~~~~~~~--~-------------~----~---~~~dglilpG~g~~~   55 (201)
T 1gpw_B            1 MRIGIISVGPGNIMN---LYRGVKRASENFEDVSIELVES--P-------------R----N---DLYDLLFIPGVGHFG   55 (201)
T ss_dssp             CEEEEECCSSSCCHH---HHHHHHHHSTTBSSCEEEEECS--C-------------C----S---SCCSEEEECCCSCSH
T ss_pred             CEEEEEecCCchHHH---HHHHHHHcCCCCCceEEEEECC--C-------------c----c---cCCCEEEECCCCcHH
Confidence            478888665323333   336777888     77777642  1             1    1   358999999952211


Q ss_pred             HhhhcC--HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          236 QAFAKS--KKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       236 ~~~~~~--~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +.....  ..+.++|+++.+++++|.+||.|.. +|+.+
T Consensus        56 ~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   93 (201)
T 1gpw_B           56 EGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-TTSSE
T ss_pred             HHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHH-HHHHh
Confidence            111111  1377899999999999999999999 89875

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.81  E-value=4.8e-05  Score=61.00  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-hh
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-FA  239 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-~~  239 (277)
                      +||+|+-.+|    .+....+.|+++|.++.++...                   ++  ..++|.|++|||...... +.
T Consensus         1 m~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------~~--~~~~dglil~GG~~~~~~~~~   55 (186)
T 2ywj_A            1 MIIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------ED--LEGIDALIIPGGESTAIGKLM   55 (186)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------GG--GTTCSEEEECCSCHHHHHHHH
T ss_pred             CEEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------HH--hccCCEEEECCCCchhhhhhh
Confidence            4788886544    2233468999999988776420                   12  246899999999532211 11


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ....+.++++   +++++|.+||.|.. +|+.+
T Consensus        56 ~~~~~~~~i~---~~~~PilGIC~G~Q-ll~~~   84 (186)
T 2ywj_A           56 KKYGLLEKIK---NSNLPILGTCAGMV-LLSKG   84 (186)
T ss_dssp             HHTTHHHHHH---TCCCCEEEETHHHH-HHSSC
T ss_pred             hccCHHHHHH---hcCCcEEEECHHHH-HHHHH
Confidence            1223555655   78999999999999 89875

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.70  E-value=2.2e-05  Score=64.30  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=56.3

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      |++||+|+=|-.-+   +.....+|++.|+++.++..                   .+++  .++|.||+||+.. +...
T Consensus         1 M~~~I~iiD~g~~n---~~si~~al~~~G~~~~v~~~-------------------~~~l--~~~D~lilPG~g~-~~~~   55 (211)
T 4gud_A            1 MTQNVVIIDTGCAN---ISSVKFAIERLGYAVTISRD-------------------PQVV--LAADKLFLPGVGT-ASEA   55 (211)
T ss_dssp             --CCEEEECCCCTT---HHHHHHHHHHTTCCEEEECC-------------------HHHH--HHCSEEEECCCSC-HHHH
T ss_pred             CCCEEEEEECCCCh---HHHHHHHHHHCCCEEEEECC-------------------HHHH--hCCCEEEECCCCC-HHHH
Confidence            34688887443222   34566788999998876521                   1222  3479999999532 2222


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...-+...+++...+.++||.+||-|-. +|+++
T Consensus        56 ~~~~~~~~~i~~~~~~~~PvlGIClG~Q-lL~~~   88 (211)
T 4gud_A           56 MKNLTERDLIELVKRVEKPLLGICLGMQ-LLGKL   88 (211)
T ss_dssp             HHHHHHTTCHHHHHHCCSCEEEETHHHH-TTSSE
T ss_pred             HHHHHhcChHHHHHHcCCCEEEEchhHh-HHHHH
Confidence            1222233467777889999999999999 89764

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.67  E-value=6.1e-05  Score=63.05  Aligned_cols=93  Identities=20%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh---
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~---  237 (277)
                      .||.++-.  ...........+++..|.++.++-.+..             +...++  ...+|.|++|||......   
T Consensus        13 ~~~~~i~~--~~~~~~~~i~~~l~~~G~~v~v~~~~~~-------------~~~~~~--l~~~Dglil~GG~~~~~~~~~   75 (239)
T 1o1y_A           13 VRVLAIRH--VEIEDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERP--LEEYSLVVLLGGYMGAYEEEK   75 (239)
T ss_dssp             CEEEEECS--STTSSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSC--GGGCSEEEECCCSCCTTCTTT
T ss_pred             eEEEEEEC--CCCCCchHHHHHHHhCCCcEEEeCCcCc-------------cccccc--hhcCCEEEECCCCccccCCcc
Confidence            45555544  3333344677888889998876643211             000111  236899999998532211   


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ......+.++|+++.+++++|.+||-|.. +|+.
T Consensus        76 ~~~l~~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~  108 (239)
T 1o1y_A           76 YPFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAK  108 (239)
T ss_dssp             CTHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             ChhHHHHHHHHHHHHHCCCCEEEEchhHH-HHHH
Confidence            11123678899999999999999999999 8886

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.54  E-value=0.00029  Score=62.81  Aligned_cols=183  Identities=17%  Similarity=0.199  Sum_probs=100.9

Q ss_pred             ccccChHHHHHHHHHHhCCCEEEEEchhHHH-HHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHh---cChhHHHHH
Q 023800           56 NLKESEVLESIVKKQASDGRLYAAICVFLAV-ALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL---YGKGKADEV  131 (277)
Q Consensus        56 ~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~-~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l---~g~~~a~~v  131 (277)
                      +.+....|-+||++..-  --|..|-|=+++ .|=+.|-++|    .+++. .... .+-.+.-++..   .+.+.+.+|
T Consensus        90 ~~~~~~~l~~~l~~~~i--~gi~giDTR~lt~~iR~~G~~~~----~i~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~v  161 (379)
T 1a9x_B           90 NFRNTEDLSSYLKRHNI--VAIADIDTRKLTRLLREKGAQNG----CIIAG-DNPD-AALALEKARAFPGLNGMDLAKEV  161 (379)
T ss_dssp             CTTCCSCHHHHHHHTTC--EEEESSCHHHHHHHHHHHCCEEE----EEEES-SSCC-HHHHHHHHHHCCCSTTCBCHHHH
T ss_pred             cccccCCHHHHHHHCCC--ccccCCCHHHHHHHHHhcCCeeE----EEecC-CCCC-HHHHHHHHHhCCCccccCcccee
Confidence            34566678888875431  124445554431 1223455553    34442 1222 22223333332   345566777


Q ss_pred             hhcccccccCCCchhhc-ccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEE
Q 023800          132 SGARVMRANHGDEFTIA-EFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLV  210 (277)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~  210 (277)
                      .-.-.|.++++.. ... .+......-...+||+++=+ |+.    ....+.|+++|.++.++-.+.             
T Consensus       162 s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~-------------  222 (379)
T 1a9x_B          162 TTAEAYSWTQGSW-TLTGGLPQAKKEDELPFHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT-------------  222 (379)
T ss_dssp             SCSSCEEECCCCC-BTTTBSCCCCCGGGCCEEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC-------------
T ss_pred             CCCCCEEeCCCCc-ccccccccccccccCCCEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC-------------
Confidence            6554444322210 000 00000000001247877766 554    347788999999888774432             


Q ss_pred             eCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          211 ADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       211 ~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                         ..+++...++|.|+++||...+.   ......++++++.++++||.+||-|.. +|+.+
T Consensus       223 ---~~e~i~~~~~DGliLsGGPgdp~---~~~~~~~~Ir~~~~~~~PILGIClG~Q-LLa~A  277 (379)
T 1a9x_B          223 ---SAEDVLKMNPDGIFLSNGPGDPA---PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  277 (379)
T ss_dssp             ---CHHHHHTTCCSEEEECCCSBCST---TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             ---CHHHHhhcCCCEEEEeCCCCChH---HHHHHHHHHHHHHHcCCCEEEECchHH-HHHHH
Confidence               12333334689999999864332   346788999999999999999999999 89863

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.31  E-value=0.00055  Score=56.10  Aligned_cols=88  Identities=18%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC-cchHHh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG-LGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~~  237 (277)
                      .++||.++-+.+-.   .....+.|+++|.++.++..+.                ..+++  .++|.||+||| ......
T Consensus        12 ~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l--~~~DglIl~GG~p~~~~~   70 (212)
T 2a9v_A           12 HMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSEL--DGLDGLVLSGGAPNIDEE   70 (212)
T ss_dssp             CCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGG--TTCSEEEEEEECSCGGGT
T ss_pred             ccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHH--hCCCEEEECCCCCCCCcc
Confidence            34677776544322   2346678888998887765431                12333  34899999999 433322


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ....+.+.+++   .++++++.+||-|.. +|+.
T Consensus        71 ~~~~~~l~~~~---~~~~~PiLGIC~G~Q-ll~~  100 (212)
T 2a9v_A           71 LDKLGSVGKYI---DDHNYPILGICVGAQ-FIAL  100 (212)
T ss_dssp             GGGHHHHHHHH---HHCCSCEEEETHHHH-HHHH
T ss_pred             cccchhHHHHH---HhCCCCEEEEChHHH-HHHH
Confidence            11223344443   478999999999999 8876

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.18  E-value=0.00033  Score=57.73  Aligned_cols=87  Identities=11%  Similarity=0.097  Sum_probs=53.6

Q ss_pred             CCeEEEEec-CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIA-NGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~-~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      .++|+|+=+ +++.    ..+...|+++|.++.++..+..                .+++...++|.|++|||.......
T Consensus        24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~----------------~~~l~~~~~dglil~Gg~~~~~~~   83 (218)
T 2vpi_A           24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGPNSVYAE   83 (218)
T ss_dssp             TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC----------------HHHHHHHTCSEEEEEC--------
T ss_pred             CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC----------------hHHHhhcCCCEEEECCCCcccccc
Confidence            368999855 4443    3566888999998888755431                223322468999999985322111


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                       ..+   .+.+...+.+++|.+||.|.. +|+.
T Consensus        84 -~~~---~~~~~~~~~~~PilGIC~G~Q-ll~~  111 (218)
T 2vpi_A           84 -DAP---WFDPAIFTIGKPVLGICYGMQ-MMNK  111 (218)
T ss_dssp             --CC---CCCGGGGTSSCCEEEETHHHH-HHHH
T ss_pred             -cch---hHHHHHHHcCCCEEEEcHHHH-HHHH
Confidence             111   122344578999999999999 8876

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.15  E-value=0.0012  Score=55.67  Aligned_cols=79  Identities=15%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc-hHHhh-------------hcCHH
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG-GAQAF-------------AKSKK  243 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~~~-------------~~~~~  243 (277)
                      ..++.+.++|..+.++.....              ..+.+. .+.+|.|+++||.. .+...             ..+..
T Consensus        32 ~~~~~l~~aG~~pv~lp~~~~--------------~~~~~~-l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~   96 (254)
T 3fij_A           32 RYVDAIQKVGGFPIALPIDDP--------------STAVQA-ISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSY   96 (254)
T ss_dssp             HHHHHHHHHTCEEEEECCCCG--------------GGHHHH-HHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCc--------------hHHHHH-HhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHH
Confidence            466778888988887755432              112221 24689999999942 11110             11234


Q ss_pred             HHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          244 LVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       244 ~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+++++++.+++++|.+||-|.. +|+.+
T Consensus        97 ~~~lir~a~~~~~PiLGIC~G~Q-ll~~a  124 (254)
T 3fij_A           97 EIALVRAALDAGKPIFAICRGMQ-LVNVA  124 (254)
T ss_dssp             HHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            77899999999999999999999 88764

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=97.03  E-value=0.0014  Score=56.56  Aligned_cols=109  Identities=10%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             CCCeEEEEecCC-CchhhHHHHHHHHHhCCC--eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          159 NSPQILVPIANG-SEEMEAVIIIDILRRAKA--NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       159 ~~~kV~ill~~g-~~~~e~~~~~~~l~~a~~--~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      +++||+||-... ...+| .-+...|+....  +++++.......-.++....-.--..+.+++..+||.+||.|+....
T Consensus        34 rplkI~ILnlmp~k~~te-~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~  112 (301)
T 2vdj_A           34 RALKIAILNLMPTKQETE-AQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVET  112 (301)
T ss_dssp             CCEEEEEECCCSSHHHHH-HHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTT
T ss_pred             CCceEEEEeCCCCcCchH-HHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcC
Confidence            457999997632 22222 334444544443  45555443321101110000000124565555789999999985211


Q ss_pred             ---HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhh
Q 023800          236 ---QAFAKSKKLVNMLKKQKESNRPYGAICASPALVL  269 (277)
Q Consensus       236 ---~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lL  269 (277)
                         +....-+++.++++...++++++.+||-|.. ++
T Consensus       113 ~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ-~~  148 (301)
T 2vdj_A          113 LSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQ-AG  148 (301)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHH-HH
T ss_pred             CCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHH-HH
Confidence               1122236788888888899999999999999 63

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=96.99  E-value=0.0013  Score=53.59  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=64.7

Q ss_pred             CCeEEEEecC-CCch--hhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-H
Q 023800          160 SPQILVPIAN-GSEE--MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-A  235 (277)
Q Consensus       160 ~~kV~ill~~-g~~~--~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~  235 (277)
                      .+||+|+-+- +..+  .=+.....+|++.|++++.+.....           .++...+.+  ...|.|++|||... .
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l--~~ad~I~l~GG~~~~l   93 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKL--RKNDFIYVTGGNTFFL   93 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHH--HHSSEEEECCSCHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHH--HhCCEEEECCCCHHHH
Confidence            3688888642 2111  1245678899999998877643221           011111222  35799999998531 1


Q ss_pred             HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ........+.+.|+++.++|++++++|.|+. +|++.
T Consensus        94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~-~l~~~  129 (206)
T 3l4e_A           94 LQELKRTGADKLILEEIAAGKLYIGESAGAV-ITSPN  129 (206)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCEEEEETHHHH-TTSSB
T ss_pred             HHHHHHCChHHHHHHHHHcCCeEEEECHHHH-Hhccc
Confidence            1123345788999999999999999999999 88753

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.90  E-value=0.0017  Score=60.95  Aligned_cols=90  Identities=14%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC-cchHH-h
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG-LGGAQ-A  237 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~-~  237 (277)
                      +++|+|+-+..   ..+....+.|+++|.++.++....              +   ..  ...+|.|++||| ..... .
T Consensus         4 m~~I~Iid~~~---g~~~~~~~~l~~~G~~~~vv~~~~--------------~---~~--l~~~DglILpGgG~~~~~~~   61 (555)
T 1jvn_A            4 MPVVHVIDVES---GNLQSLTNAIEHLGYEVQLVKSPK--------------D---FN--ISGTSRLILPGVGNYGHFVD   61 (555)
T ss_dssp             SCEEEEECCSC---SCCHHHHHHHHHTTCEEEEESSGG--------------G---CC--STTCSCEEEEECSCHHHHHH
T ss_pred             CCEEEEEECCC---CCHHHHHHHHHHCCCEEEEECCcc--------------c---cc--cccCCEEEECCCCchHhHhh
Confidence            46899997641   122356788899999888764211              0   01  236899999994 32111 0


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ...+..+.++|+++.++++||.+||.|.. +|+.+
T Consensus        62 ~l~~~~~~~~i~~~~~~g~PiLGIC~G~Q-lL~~a   95 (555)
T 1jvn_A           62 NLFNRGFEKPIREYIESGKPIMGIXVGLQ-ALFAG   95 (555)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEEEEEHHHH-TTEEE
T ss_pred             hhhhccHHHHHHHHHHcCCcEEEEchhhh-hhhhh
Confidence            11122467899999999999999999999 89875

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.87  E-value=0.0039  Score=53.95  Aligned_cols=109  Identities=11%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             CCCeEEEEecCC-CchhhHHHHHHHHHhCCC--eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          159 NSPQILVPIANG-SEEMEAVIIIDILRRAKA--NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       159 ~~~kV~ill~~g-~~~~e~~~~~~~l~~a~~--~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      +++||+||-... ...+| .-+...|+....  +++++.......-.++....-.--.++.+++..+||.+||.|+....
T Consensus        46 rplkI~ILnlmp~k~~te-~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~  124 (312)
T 2h2w_A           46 RPLEILILNLMPDKIKTE-IQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVEL  124 (312)
T ss_dssp             CCEEEEEECCCSSHHHHH-HHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTT
T ss_pred             CCceEEEEeCCCCcCchH-HHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCC
Confidence            457999997632 22222 345555655554  44445443320000000000000024555555789999999985211


Q ss_pred             ---HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhh
Q 023800          236 ---QAFAKSKKLVNMLKKQKESNRPYGAICASPALVL  269 (277)
Q Consensus       236 ---~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lL  269 (277)
                         .....-+++.++++...++++++.+||-|.. ++
T Consensus       125 ~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ-~~  160 (312)
T 2h2w_A          125 LPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQ-AG  160 (312)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHH-HH
T ss_pred             CCCccCchHHHHHHHHHHHHHcCCcEEEECHHHH-HH
Confidence               1222236788888888889999999999999 63

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=96.85  E-value=0.0018  Score=53.70  Aligned_cols=95  Identities=13%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             CCeEEEEecCC--Cc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800          160 SPQILVPIANG--SE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ  236 (277)
Q Consensus       160 ~~kV~ill~~g--~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~  236 (277)
                      .+||+|+-+-.  .. ..-+.....+|++.|+++..+...               +...+++  .+.|.|++|||.. ..
T Consensus        31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~---------------~d~~~~l--~~ad~I~lpGG~~-~~   92 (229)
T 1fy2_A           31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRV---------------ADPLAAI--EKAEIIIVGGGNT-FQ   92 (229)
T ss_dssp             CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSS---------------SCHHHHH--HHCSEEEECCSCH-HH
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecc---------------ccHHHHH--hcCCEEEECCCcH-HH
Confidence            36888886542  22 122455677888888876554211               1111333  3579999999863 22


Q ss_pred             h--hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800          237 A--FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG  273 (277)
Q Consensus       237 ~--~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG  273 (277)
                      -  ......+.+.|+++.++|+++.++|.|+. +|++..
T Consensus        93 ~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~-~l~~~~  130 (229)
T 1fy2_A           93 LLKESRERGLLAPMADRVKRGALYIGWSAGAN-LACPTI  130 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-HTSSBS
T ss_pred             HHHHHHHCChHHHHHHHHHcCCEEEEECHHHH-hhcccc
Confidence            1  12234688899999999999999999999 898743

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=96.83  E-value=0.0014  Score=56.95  Aligned_cols=97  Identities=19%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             CCeEEEEecCCCch--------hhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800          160 SPQILVPIANGSEE--------MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG  231 (277)
Q Consensus       160 ~~kV~ill~~g~~~--------~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG  231 (277)
                      .+.|+|....+...        .-.....+.|+.+|.++.++..+..             ...+.+. ...+|.|++|||
T Consensus        30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-------------~~~i~~~-l~~~dglil~GG   95 (315)
T 1l9x_A           30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT-------------EKDYEIL-FKSINGILFPGG   95 (315)
T ss_dssp             CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-------------HHHHHHH-HHHSSEEEECCC
T ss_pred             CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC-------------HHHHHHH-HhcCCEEEEeCC
Confidence            35788886543211        0112457888899998888755421             0112211 135899999998


Q ss_pred             cchHHhh---hcCHHHHHHHHHHHHcC--CcEEEEchhhHHhhhh
Q 023800          232 LGGAQAF---AKSKKLVNMLKKQKESN--RPYGAICASPALVLEP  271 (277)
Q Consensus       232 ~~~~~~~---~~~~~~~~~l~~~~~~~--~~i~aiC~G~~~lLa~  271 (277)
                      .......   .....+.++++++.+++  ++|.+||-|.. +|+.
T Consensus        96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Q-ll~~  139 (315)
T 1l9x_A           96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFE-ELSL  139 (315)
T ss_dssp             CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHH-HHHH
T ss_pred             CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHH-HHHH
Confidence            5322111   01135677777776664  99999999999 8875

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=96.74  E-value=0.0029  Score=53.84  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CeEEEEecCC--CchhhHHHHHHHHHhC----CCeEEEEeeCCCceEEcccCcEEEeCcch-hhhccCCccEEEEcCCcc
Q 023800          161 PQILVPIANG--SEEMEAVIIIDILRRA----KANVVVASVADKLEILASCQVKLVADMLI-DEAAKLSYDLIVLPGGLG  233 (277)
Q Consensus       161 ~kV~ill~~g--~~~~e~~~~~~~l~~a----~~~v~~vs~~~~~~v~~~~g~~i~~~~~~-~~~~~~~~D~livpGG~~  233 (277)
                      .+|+|+.-.|  +.+ .+..+.+.|..+    +.++.++..+.. .+....+.      .+ ..  ...+|.|++|||..
T Consensus         9 ~~Iaivg~y~~~~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~------~~~~~--~~~~dgiil~GG~~   78 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGD-TYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNAD------EARKA--LLGCDGIFVPGGFG   78 (273)
T ss_dssp             EEEEEEECCHHHHTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTH------HHHHH--HHTCSEEEECCCCT
T ss_pred             CEEEEEeCCCcCCch-HHHHHHHHHHHHHHhcCCceEEeccChh-hcccccch------hHHHH--HhhCCEEEecCCCC
Confidence            5788884221  112 344555555444    456777765532 11111110      02 22  24689999999963


Q ss_pred             hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       234 ~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .    ...+...++++.+.+.++||.+||.|.. +|+.
T Consensus        79 ~----~~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~  111 (273)
T 2w7t_A           79 N----RGVDGKCAAAQVARMNNIPYFGVXLGMQ-VAVI  111 (273)
T ss_dssp             T----TTHHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             C----cCchhHHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            2    2233577889998889999999999999 8875

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=96.58  E-value=0.0018  Score=55.57  Aligned_cols=101  Identities=12%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CeEEEE-ecCCCchhhHHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcc-hhhh--ccCCccEEEEcCCc
Q 023800          161 PQILVP-IANGSEEMEAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADML-IDEA--AKLSYDLIVLPGGL  232 (277)
Q Consensus       161 ~kV~il-l~~g~~~~e~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~-~~~~--~~~~~D~livpGG~  232 (277)
                      +||+|+ =+++... .+..+.+.|+.+|+    ++.++..+.. .+...   .+..+.. ++++  ...++|.|++|||.
T Consensus        26 ~~Iavv~d~~~~~~-s~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG~  100 (289)
T 2v4u_A           26 CSIALVGKYTKLRD-CYASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGGF  100 (289)
T ss_dssp             EEEEEEESCSSCCG-GGHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSCC
T ss_pred             eEEEEEecCcCCCc-cHHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCCC
Confidence            478886 4433322 14577788887764    4555544332 11110   0111111 1110  02368999999996


Q ss_pred             chHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          233 GGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       233 ~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .. .   ..+...++++++.+.+++|.+||.|.. +|+.
T Consensus       101 ~~-~---~~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~  134 (289)
T 2v4u_A          101 GI-R---GTLGKLQAISWARTKKIPFLGVXLGMQ-LAVI  134 (289)
T ss_dssp             SS-T---THHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             Cc-h---hHHHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence            42 2   235788999999999999999999999 8876

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.47  E-value=0.01  Score=55.53  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=57.7

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      .+|+|+=+-.-.   .......+++.|..+.++..+..                .+++...++|.||+|||....... .
T Consensus         8 ~~IlilD~Gs~~---~~~I~r~lre~Gv~~eiv~~~~~----------------~~~i~~~~~dgIIlsGGp~s~~~~-~   67 (556)
T 3uow_A            8 DKILVLNFGSQY---FHLIVKRLNNIKIFSETKDYGVE----------------LKDIKDMNIKGVILSGGPYSVTEA-G   67 (556)
T ss_dssp             CEEEEEESSCTT---HHHHHHHHHHTTCCEEEEETTCC----------------GGGTTTSCEEEEEECCCSCCTTST-T
T ss_pred             CEEEEEECCCcc---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCccccc-C
Confidence            567776543222   23567788899998888865421                233333468999999986432211 1


Q ss_pred             CHHHH-HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLV-NMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~-~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .+.+. ..++.+.++++||.+||-|.. +|+.+
T Consensus        68 ~~~~~~~l~~~a~~~g~PvLGIC~G~Q-lLa~~   99 (556)
T 3uow_A           68 SPHLKKEVFEYFLEKKIPIFGICYGMQ-EIAVQ   99 (556)
T ss_dssp             CCCCCHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             CcchhHHHHHHhhhcCCCEEEECHHHH-HHHHH
Confidence            12222 234445677999999999999 89874

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=96.26  E-value=0.0024  Score=51.32  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccch-hccccChHHHHHHHHHHhCCCEEEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      ...+.|++.|+++.+++...                .+++++..   ||.+.. +.++.+..+.++++++.++|+++.+|
T Consensus        15 ~~~~~l~~~g~~~~~~~~~~----------------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgI   78 (196)
T 2nv0_A           15 EHIHAIEACGAAGLVVKRPE----------------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGT   78 (196)
T ss_dssp             HHHHHHHHTTCEEEEECSGG----------------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHCCCEEEEeCChH----------------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEE
Confidence            34578888999888776421                12232221   664222 22333455688999999999999999


Q ss_pred             chhHHHHHHHc
Q 023800           81 CVFLAVALGSW   91 (277)
Q Consensus        81 C~g~~~~La~a   91 (277)
                      |.|.. +|+.+
T Consensus        79 C~G~q-~l~~~   88 (196)
T 2nv0_A           79 CAGLI-ILAKE   88 (196)
T ss_dssp             THHHH-HHSBC
T ss_pred             CHHHH-HHHHH
Confidence            99999 88875

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=96.17  E-value=0.015  Score=55.40  Aligned_cols=89  Identities=20%  Similarity=0.372  Sum_probs=59.8

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      .++|.|+  |.... =.......++..|+++.++..+..              .   +  ..++|.|||+||...+....
T Consensus       446 Gk~Ilvi--D~gds-f~~~l~~~l~~~G~~v~Vv~~d~~--------------~---~--~~~~DgIIlsGGPg~p~d~~  503 (645)
T 3r75_A          446 GCRALIV--DAEDH-FTAMIAQQLSSLGLATEVCGVHDA--------------V---D--LARYDVVVMGPGPGDPSDAG  503 (645)
T ss_dssp             TCEEEEE--ESSCT-HHHHHHHHHHHTTCEEEEEETTCC--------------C---C--GGGCSEEEECCCSSCTTCTT
T ss_pred             CCEEEEE--ECCcc-HHHHHHHHHHHCCCEEEEEECCCc--------------c---c--ccCCCEEEECCCCCChhhhh
Confidence            3566665  32222 124577888899999988865431              0   1  13589999998864333211


Q ss_pred             --cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          240 --KSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       240 --~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                        ..+.+.++|++..+.+++|.+||-|.. +|+.
T Consensus       504 ~p~i~~~~~lI~~a~~~~iPiLGIClG~Q-lLa~  536 (645)
T 3r75_A          504 DPRIARLYAWLRHLIDEGKPFMAVCLSHQ-ILNA  536 (645)
T ss_dssp             SHHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             hhhHHHHHHHHHHHHHCCCCEEEECHHHH-HHHH
Confidence              112467888988899999999999999 7876

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=96.01  E-value=0.003  Score=51.84  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccch-hccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      .++.|+++|+++.+++...                .+++++..   ||.... ..+..+..+.++|+++.+++++|.+||
T Consensus        38 ~~~~l~~~G~~~~~~~~~~----------------~l~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC  101 (219)
T 1q7r_A           38 HVRAIEACGAEAVIVKKSE----------------QLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTC  101 (219)
T ss_dssp             HHHHHHHTTCEEEEECSGG----------------GGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred             HHHHHHHCCCEEEEECCHH----------------HHhhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEEC
Confidence            3577888888888776421                12222221   663222 122334556789999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      .|.. +|+.+
T Consensus       102 ~G~Q-lL~~~  110 (219)
T 1q7r_A          102 AGLI-LLAKR  110 (219)
T ss_dssp             THHH-HHEEE
T ss_pred             HHHH-HHHHH
Confidence            9999 88875

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=95.71  E-value=0.011  Score=54.95  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=54.8

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      .+|+|+=+-.-..   ..+...++++|..+.++..+..                .+++....+|.||+|||.....    
T Consensus        11 ~~I~IlD~g~~~~---~~i~r~lr~~Gv~~~i~p~~~~----------------~~~i~~~~~dgIILsGGp~sv~----   67 (527)
T 3tqi_A           11 HRILILDFGSQYA---QLIARRVREIGVYCELMPCDID----------------EETIRDFNPHGIILSGGPETVT----   67 (527)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHHTCEEEEEETTCC----------------SSSSTTTCCSEEEECCCCC-------
T ss_pred             CeEEEEECCCccH---HHHHHHHHHCCCeEEEEECCCC----------------HHHHHhcCCCEEEECCcCcccc----
Confidence            5788885532222   4567888999999888854322                1222212469999999964221    


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ++......+..++.++||.+||-|.. +|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~PvLGIC~G~Q-lla~~   98 (527)
T 3tqi_A           68 LSHTLRAPAFIFEIGCPVLGICYGMQ-TMAYQ   98 (527)
T ss_dssp             ------CCCSTTTSSSCEEEETHHHH-HHHHH
T ss_pred             cCCChhhHHHHHhcCCCEEEEChHHH-HHHHH
Confidence            22223344556788999999999999 88863

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=95.60  E-value=0.0062  Score=49.45  Aligned_cols=69  Identities=10%  Similarity=0.208  Sum_probs=44.8

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-ccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ..+.|++.|+++.+++...                .+++++..   ||.+... .+..+..+.++|+++.++|++|.+||
T Consensus        35 ~~~~l~~~g~~~~~~~~~~----------------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC   98 (208)
T 2iss_D           35 HVEALHKLGVETLIVKLPE----------------QLDMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATC   98 (208)
T ss_dssp             HHHHHHHTTCEEEEECSGG----------------GGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred             HHHHHHHCCCEEEEeCChH----------------HHhhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEEC
Confidence            4567777888877775321                12222221   6642221 12223446789999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      .|.. +|+.+
T Consensus        99 ~G~Q-lL~~~  107 (208)
T 2iss_D           99 AGVI-LLAKR  107 (208)
T ss_dssp             HHHH-HHEEE
T ss_pred             HHHH-HHHHH
Confidence            9999 88875

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=95.53  E-value=0.046  Score=43.57  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhh-hccCCccEEEEcCCcchHHhhhc
Q 023800          162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDE-AAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~-~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      ||+|+=..+  .. .....+.|++.|.++.++..+..             ...+.+ ....+.|.+++.||...+..   
T Consensus         2 ~i~iiDn~~--s~-~~~i~~~l~~~G~~~~v~~~~~~-------------~~~i~~~l~~~~~~~iil~gGpg~~~~---   62 (192)
T 1i1q_B            2 DILLLDNID--SF-TWNLADQLRTNGHNVVIYRNHIP-------------AQTLIDRLATMKNPVLMLSPGPGVPSE---   62 (192)
T ss_dssp             EEEEEECSC--SS-HHHHHHHHHHTTCEEEEEETTSC-------------SHHHHHHHTTCSSEEEEECCCSSCGGG---
T ss_pred             cEEEEECCc--cH-HHHHHHHHHHCCCeEEEEECCCC-------------HHHHHHHhhhccCCeEEECCCCcCchh---
Confidence            566664222  11 24557888899999888765421             011111 11112334666655433322   


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ......++ +..+++++|.+||-|.. +|+++
T Consensus        63 ~~~~~~l~-~~~~~~~PilGIC~G~Q-ll~~~   92 (192)
T 1i1q_B           63 AGCMPELL-TRLRGKLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             STTHHHHH-HHHBTTBCEEEETHHHH-HHHHH
T ss_pred             CchHHHHH-HHHhcCCCEEEECcChH-HHHHH
Confidence            22223333 44678999999999999 89873

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.13  E-value=0.011  Score=46.96  Aligned_cols=70  Identities=16%  Similarity=0.153  Sum_probs=46.2

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCC-CEEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDG-RLYAA   79 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g-~~i~a   79 (277)
                      ...+.|++.|+++.+++...                .+++++..   ||.+. ...+..+..+.++++++.+++ ++|.+
T Consensus        16 ~~~~~l~~~G~~~~~~~~~~----------------~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilG   79 (191)
T 2ywd_A           16 EHKEALKRLGIEAKEVRKKE----------------HLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFG   79 (191)
T ss_dssp             HHHHHHHTTTCCCEEECSGG----------------GGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHCCCEEEEeCChh----------------hhccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEE
Confidence            45677888888887765321                12222221   66322 222322456788999999999 99999


Q ss_pred             EchhHHHHHHHc
Q 023800           80 ICVFLAVALGSW   91 (277)
Q Consensus        80 iC~g~~~~La~a   91 (277)
                      ||.|.. +|+.+
T Consensus        80 iC~G~Q-~l~~~   90 (191)
T 2ywd_A           80 TCAGAI-WLAKE   90 (191)
T ss_dssp             ETHHHH-HHEEE
T ss_pred             ECHHHH-HHHHH
Confidence            999999 88875

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.07  E-value=0.019  Score=52.83  Aligned_cols=151  Identities=12%  Similarity=0.128  Sum_probs=83.0

Q ss_pred             CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc---C--CCCeEEEEe-cCCCc
Q 023800           99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF---D--NSPQILVPI-ANGSE  172 (277)
Q Consensus        99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~kV~ill-~~g~~  172 (277)
                      ..++|...+..+-.+.=+.+=+    ....+.+.+.+.++....+   +.+-..+...+   +  ...+|+++= |-+..
T Consensus       234 ~~~VI~i~DvdtiY~vpl~L~~----qGl~~~~~~~l~l~~~~~~---~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~  306 (535)
T 3nva_A          234 VDHIVSSYDVETSYEVPIILES----QKLVSKILSRLKLEDRQVD---LTDWISFVNNIKGINSKKTINIALVGKYTKLK  306 (535)
T ss_dssp             GGGEEEEECCSCGGGHHHHHHH----HTHHHHHHHHTTCCCCCCC---CHHHHHHHHHHHTTTCCCEEEEEEEESCTTSG
T ss_pred             hhceEecCCCChHHHhHHHHHH----CCcHHHHHHHcCCCCCCCC---HHHHHHHHHHhhccCCCCeeEEEEEecCcCCc
Confidence            5678888888764333233322    3456667777766532211   11111111111   1  223555543 22221


Q ss_pred             hhhHHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHH
Q 023800          173 EMEAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNML  248 (277)
Q Consensus       173 ~~e~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l  248 (277)
                       -.+....++|..++    .++.+.-.+.. .+... +.     ...++  ..++|.|++|||.+..    ..+...+++
T Consensus       307 -DaY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~~-----~~~~~--L~~~DgIIlpGG~G~~----~~~g~i~~i  372 (535)
T 3nva_A          307 -DSYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-TK-----NLNEI--LGNVNGIIVLPGFGSR----GAEGKIKAI  372 (535)
T ss_dssp             -GGGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-SS-----CCTTT--TTSCSEEEECCCCSST----THHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-cc-----chhhh--ccCCCEEEECCCCCCc----cHHHHHHHH
Confidence             22445666776554    46666544432 11111 00     01222  3579999999997422    335778899


Q ss_pred             HHHHHcCCcEEEEchhhHHhhhh
Q 023800          249 KKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       249 ~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      +.+.++++|+.+||-|.. +|+.
T Consensus       373 r~a~~~~~PiLGIClG~Q-ll~v  394 (535)
T 3nva_A          373 KYAREHNIPFLGICFGFQ-LSIV  394 (535)
T ss_dssp             HHHHHHTCCEEEETHHHH-HHHH
T ss_pred             HHHHHcCCcEEEECcchh-HHHH
Confidence            999999999999999999 7764

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=95.06  E-value=0.027  Score=52.35  Aligned_cols=87  Identities=13%  Similarity=0.099  Sum_probs=55.5

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      ++|+|+=+.+-..   ......++++|..+.++..+..                .+++..-.+|.||+|||...... ..
T Consensus         8 ~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~~----------------~~~i~~~~~dgiILsGGp~s~~~-~~   67 (525)
T 1gpm_A            8 HRILILDFGSQYT---QLVARRVRELGVYCELWAWDVT----------------EAQIRDFNPSGIILSGGPESTTE-EN   67 (525)
T ss_dssp             SEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCCC----------------HHHHHHHCCSEEEECCCSSCTTS-TT
T ss_pred             CEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCCC----------------HHHHhccCCCEEEECCcCccccc-cC
Confidence            5788886543222   4567889999998888754421                22222124699999998642221 11


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .+.+   .+..++.++||.+||-|.. +|+.
T Consensus        68 ~~~~---~~~~~~~g~PvLGIC~G~Q-lla~   94 (525)
T 1gpm_A           68 SPRA---PQYVFEAGVPVFGVCYGMQ-TMAM   94 (525)
T ss_dssp             CCCC---CGGGGTSSSCEEEETHHHH-HHHH
T ss_pred             Ccch---HHHHHHCCCCEEEEChHHH-HHHH
Confidence            1111   2345578999999999999 8886

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=95.00  E-value=0.094  Score=43.26  Aligned_cols=74  Identities=14%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhcccc----C--hHHHHHHHHHHhCCCEE
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKE----S--EVLESIVKKQASDGRLY   77 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~----~--~~~~~~l~~~~~~g~~i   77 (277)
                      .+.+++.|+++.++....+.++         |+ .+++++..   ||...+.....    -  ....++|++..+++++|
T Consensus        18 ~~~l~~~g~~~~~~~~~~~~~~---------p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv   87 (236)
T 3l7n_A           18 LAWAALRGHDVSMTKVYRYEKL---------PK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKII   87 (236)
T ss_dssp             HHHHHHTTCEEEEEEGGGTCCC---------CS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHCCCeEEEEeeeCCCCC---------CC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCE
Confidence            4557788999998887542211         11 22333322   66322121111    1  34789999999999999


Q ss_pred             EEEchhHHHHHHHc
Q 023800           78 AAICVFLAVALGSW   91 (277)
Q Consensus        78 ~aiC~g~~~~La~a   91 (277)
                      .+||-|.. +|+.+
T Consensus        88 LGIClG~Q-lL~~~  100 (236)
T 3l7n_A           88 VGVCLGAQ-LMGVA  100 (236)
T ss_dssp             EEETHHHH-HHHHH
T ss_pred             EEEchHHH-HHHHH
Confidence            99999999 89887

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=94.90  E-value=0.021  Score=45.95  Aligned_cols=68  Identities=21%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---C-Cccch--hccccChHHHHHHHHHHhCCCEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---C-GMPGA--TNLKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---g-G~~~~--~~~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      ..+.|++.|+++.+++...                .+++++..   | |.+..  ..++ +..+.++++++.+++++|.+
T Consensus        18 ~~~~l~~~G~~~~~~~~~~----------------~l~~~d~lil~G~g~~~~~~~~l~-~~~~~~~i~~~~~~~~PilG   80 (200)
T 1ka9_H           18 AAKALEAAGFSVAVAQDPK----------------AHEEADLLVLPGQGHFGQVMRAFQ-ESGFVERVRRHLERGLPFLG   80 (200)
T ss_dssp             HHHHHHHTTCEEEEESSTT----------------SCSSCSEEEECCCSCHHHHHHTTS-SSCTHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHCCCeEEEecChH----------------HcccCCEEEECCCCcHHHHHHHHH-hcCHHHHHHHHHHcCCeEEE
Confidence            4678889999988876321                12222211   4 32211  1222 25578999999999999999


Q ss_pred             EchhHHHHHHHc
Q 023800           80 ICVFLAVALGSW   91 (277)
Q Consensus        80 iC~g~~~~La~a   91 (277)
                      ||.|.. +|+.+
T Consensus        81 IC~G~Q-ll~~~   91 (200)
T 1ka9_H           81 ICVGMQ-VLYEG   91 (200)
T ss_dssp             CTHHHH-TTSSE
T ss_pred             EcHHHH-HHHHh
Confidence            999999 89987

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=94.77  E-value=0.061  Score=44.96  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccch-hccccChHHHHHHHHHHhCCCEEEEEch
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAICV   82 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC~   82 (277)
                      .+.|++.|+++.++....+.+.         | ..+++.+..   ||.... +..+....+.++++++.+.+++|.+||.
T Consensus        21 ~~~l~~~G~~v~v~~~~~~~~~---------p-~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~   90 (250)
T 3m3p_A           21 GDFLAGEHIPFQVLRMDRSDPL---------P-AEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCL   90 (250)
T ss_dssp             HHHHHHTTCCEEEEEGGGTCCC---------C-SCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETH
T ss_pred             HHHHHHCCCeEEEEeccCCCcC---------c-CccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECH
Confidence            4567888999998886542211         1 112233222   553211 1122235678999999999999999999


Q ss_pred             hHHHHHHHc
Q 023800           83 FLAVALGSW   91 (277)
Q Consensus        83 g~~~~La~a   91 (277)
                      |.. +|+.+
T Consensus        91 G~Q-ll~~~   98 (250)
T 3m3p_A           91 GGQ-LLAKA   98 (250)
T ss_dssp             HHH-HHHHH
T ss_pred             HHH-HHHHH
Confidence            999 89887

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=94.51  E-value=0.081  Score=54.14  Aligned_cols=39  Identities=10%  Similarity=0.061  Sum_probs=33.9

Q ss_pred             ccChHHHHHHHHHH-hCCCEEEEEchhHHHHHHHc-CCCCCC
Q 023800           58 KESEVLESIVKKQA-SDGRLYAAICVFLAVALGSW-GLLKGL   97 (277)
Q Consensus        58 ~~~~~~~~~l~~~~-~~g~~i~aiC~g~~~~La~a-Gll~g~   97 (277)
                      ..++.+.+.++++. ++++++.+||.|.+ +|.++ |||.|.
T Consensus      1119 l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1119 LFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGS 1159 (1303)
T ss_dssp             HTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTC
T ss_pred             HhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCC
Confidence            45678888899875 68999999999999 99999 999875

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=94.31  E-value=0.041  Score=51.16  Aligned_cols=46  Identities=28%  Similarity=0.472  Sum_probs=37.7

Q ss_pred             CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      ..+|.|++|||...+    ..+...++++.+.++++|+.+||-|-. +|+.
T Consensus       342 ~~~DGIilsGGpg~~----~~~g~~~~i~~a~~~~~PiLGIClG~Q-ll~v  387 (545)
T 1s1m_A          342 KGLDAILVPGGFGYR----GVEGMITTARFARENNIPYLGICLGMQ-VALI  387 (545)
T ss_dssp             TTCSEEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             hcCCEEEECCCCCCc----cchhhHHHHHHHHHCCCcEEEECChHH-HHHH
Confidence            468999999996432    235677899999999999999999999 7874

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=94.06  E-value=0.041  Score=51.20  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+|.|++|||.+..    ..+..+.+++.+.++++|+.+||-|-. +|+.+
T Consensus       354 ~~~DGIILpGGfGd~----~~~g~i~~ir~a~e~~iPiLGICLGmQ-lL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVR----GIEGKVRAAQYARERKIPYLGICLGLQ-IAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             hcCCEEEECCCCCCc----chhhhHHHHHHHHHCCCcEEEECcCHH-HHHHH
Confidence            468999999996432    224567888988889999999999999 78653

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=93.90  E-value=0.08  Score=41.98  Aligned_cols=69  Identities=10%  Similarity=0.107  Sum_probs=46.2

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccc--cccC---CCccchhccccChHHHHHHHHHHhCCCEEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSN--CRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~--~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      ...+.|++.|+++.++....  ..           ..+.+  ++..   ||. .+.   +...+.++++++.++++++.+
T Consensus        15 ~~~~~l~~~G~~~~~~~~~~--~~-----------~~~~~~~~dglil~Gg~-~~~---~~~~~~~~i~~~~~~~~PilG   77 (189)
T 1wl8_A           15 RIWRTLRYLGVETKIIPNTT--PL-----------EEIKAMNPKGIIFSGGP-SLE---NTGNCEKVLEHYDEFNVPILG   77 (189)
T ss_dssp             HHHHHHHHTTCEEEEEETTC--CH-----------HHHHHTCCSEEEECCCS-CTT---CCTTHHHHHHTGGGTCSCEEE
T ss_pred             HHHHHHHHCCCeEEEEECCC--Ch-----------HHhcccCCCEEEECCCC-Chh---hhhhHHHHHHHHhhCCCeEEE
Confidence            45778889999988887542  00           01111  1111   663 322   245568899877789999999


Q ss_pred             EchhHHHHHHHc
Q 023800           80 ICVFLAVALGSW   91 (277)
Q Consensus        80 iC~g~~~~La~a   91 (277)
                      ||.|.. +|+.+
T Consensus        78 IC~G~Q-~l~~~   88 (189)
T 1wl8_A           78 ICLGHQ-LIAKF   88 (189)
T ss_dssp             ETHHHH-HHHHH
T ss_pred             EcHHHH-HHHHH
Confidence            999999 89886

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=93.51  E-value=0.11  Score=41.49  Aligned_cols=73  Identities=11%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccc--cccC---CCccchhccccChHHHHHHHHHHhCCCEEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSN--CRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~--~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      .+.+.|++.|+++.++..+. ...          + .+.+  ++..   ||.......++.+...++++++ +.++++.+
T Consensus        16 ~~~~~l~~~G~~~~v~~~~~-~~~----------~-~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLG   82 (195)
T 1qdl_B           16 NIAQIVGELGSYPIVIRNDE-ISI----------K-GIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPILG   82 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTT-SCH----------H-HHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEE
T ss_pred             HHHHHHHhCCCEEEEEeCCC-CCH----------H-HHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEE
Confidence            35678899999998887542 000          0 1111  1111   5522222111122356888875 78999999


Q ss_pred             EchhHHHHHHHc
Q 023800           80 ICVFLAVALGSW   91 (277)
Q Consensus        80 iC~g~~~~La~a   91 (277)
                      ||-|.. +|+.+
T Consensus        83 IC~G~Q-lL~~~   93 (195)
T 1qdl_B           83 VCLGHQ-AIGYA   93 (195)
T ss_dssp             ETHHHH-HHHHH
T ss_pred             EehHHH-HHHHH
Confidence            999999 89987

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=93.39  E-value=0.053  Score=52.07  Aligned_cols=89  Identities=11%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      ..+|+|+=+.+-...   .+...+++.|..+.++..+.                ..+++...++|.||++||...... .
T Consensus        29 ~~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~----------------~~e~i~~~~~dGIILsGGp~s~~~-~   88 (697)
T 2vxo_A           29 EGAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLET----------------PAFAIKEQGFRAIIISGGPNSVYA-E   88 (697)
T ss_dssp             CCCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTC----------------CHHHHHHHTCSEEEEEECC-------
T ss_pred             CCEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCC----------------CHHHHhhcCCCEEEECCCCCcccC-c
Confidence            357888866542221   35588899999888886542                123332246899999999642211 1


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+.   +.+..++.++||.+||.|.. +|+.+
T Consensus        89 ~~~~---~~~~i~~~g~PvLGIC~G~Q-lLa~~  117 (697)
T 2vxo_A           89 DAPW---FDPAIFTIGKPVLGICYGMQ-MMNKV  117 (697)
T ss_dssp             -CCC---CCGGGTTSSCCEEEEEHHHH-HHHHH
T ss_pred             cchh---HHHHHHhCCCCEEEECHHHH-HHHHH
Confidence            1111   12334578999999999999 89863

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=93.24  E-value=0.19  Score=42.97  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=63.1

Q ss_pred             CeEEEEecCCCchhh-HHHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcch-hhhccCCccEEEEcCCcch-HH
Q 023800          161 PQILVPIANGSEEME-AVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLI-DEAAKLSYDLIVLPGGLGG-AQ  236 (277)
Q Consensus       161 ~kV~ill~~g~~~~e-~~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~-~~~~~~~~D~livpGG~~~-~~  236 (277)
                      .+|+|+-+-.....+ .....++|++.|+ +++++..... .  .      ..+..+ +.+  .+.|+|+|+||... ..
T Consensus        57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~--~------a~~~~~~~~l--~~ad~I~v~GGnt~~l~  125 (291)
T 3en0_A           57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A--Q------GDDSGYRLFV--EQCTGIFMTGGDQLRLC  125 (291)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G--G------GGCHHHHHHH--HHCSEEEECCSCHHHHH
T ss_pred             CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c--c------cCCHHHHHHH--hcCCEEEECCCCHHHHH
Confidence            478887654333322 2345678888888 6777654321 0  0      011111 222  35799999999631 11


Q ss_pred             hhhcCHHHHHHHHHHHHcC-CcEEEEchhhHHhhhh
Q 023800          237 AFAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP  271 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~-~~i~aiC~G~~~lLa~  271 (277)
                      .......+.+.|++.+++| .++++.|.|+. ++++
T Consensus       126 ~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~-i~~~  160 (291)
T 3en0_A          126 GLLADTPLMDRIRQRVHNGEISLAGTSAGAA-VMGH  160 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSSEEEEETHHHH-TTSS
T ss_pred             HHHHhCCHHHHHHHHHHCCCeEEEEeCHHHH-hhhH
Confidence            2234568899999999999 89999999999 7764

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=92.74  E-value=0.15  Score=47.11  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=48.2

Q ss_pred             HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800          177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR  256 (277)
Q Consensus       177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~  256 (277)
                      ......++++|..+.++..+..                .+++..-.+|.||+|||...... ...+.+   .+..++.++
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~~----------------~~~i~~~~~dgiIlsGGp~s~~~-~~~~~~---~~~~~~~~~   72 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDAP----------------LEEVLKHRPQALILSGGPRSVFD-PDAPRP---DPRLFSSGL   72 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTCC----------------HHHHHTTCCSEEEECCCSSCSSC-TTCCCC---CGGGGCSSC
T ss_pred             HHHHHHHHHCCCEEEEEECCCC----------------HHHHHhcCCCEEEECCCCchhcc-CCCcch---HHHHHhCCC
Confidence            5677889999988877754321                23332224699999998642211 011111   134457899


Q ss_pred             cEEEEchhhHHhhhhC
Q 023800          257 PYGAICASPALVLEPH  272 (277)
Q Consensus       257 ~i~aiC~G~~~lLa~a  272 (277)
                      ||.+||-|.. +|+.+
T Consensus        73 PvLGIC~G~Q-lla~~   87 (503)
T 2ywb_A           73 PLLGICYGMQ-LLAQE   87 (503)
T ss_dssp             CEEEETHHHH-HHHHT
T ss_pred             CEEEECHHHH-HHHHH
Confidence            9999999999 88874

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=92.60  E-value=0.056  Score=44.28  Aligned_cols=30  Identities=10%  Similarity=-0.031  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHhC-CCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASD-GRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~-g~~i~aiC~g~~~~La~a   91 (277)
                      ..+.++|+++.++ |++|.+||.|.. +|+.+
T Consensus        66 ~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           66 DTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence            5689999999999 999999999999 88886

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=92.60  E-value=0.18  Score=41.67  Aligned_cols=29  Identities=10%  Similarity=0.096  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           62 VLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+.++++++.++++++.+||-|.. +|+.+
T Consensus        81 ~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a  109 (239)
T 1o1y_A           81 YEFQLIEEILKKEIPFLGICLGSQ-MLAKV  109 (239)
T ss_dssp             HHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence            678999999999999999999999 89987

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=90.13  E-value=0.23  Score=39.68  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800           63 LESIVKKQASDGRLYAAICVFLAVALGSWG   92 (277)
Q Consensus        63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aG   92 (277)
                      +.++|+++.+++++|.+||.|.. +|+.+.
T Consensus        66 ~~~~i~~~~~~~~PilGIC~G~Q-ll~~~~   94 (201)
T 1gpw_B           66 LIDFVRKHVEDERYVVGVCLGMQ-LLFEES   94 (201)
T ss_dssp             CHHHHHHHHHTTCEEEEETHHHH-TTSSEE
T ss_pred             HHHHHHHHHHcCCeEEEEChhHH-HHHHhh
Confidence            77899999999999999999999 888864

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=89.71  E-value=0.29  Score=38.50  Aligned_cols=66  Identities=11%  Similarity=0.043  Sum_probs=39.8

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc--cccChHHHHHHHHHHhCCCEEEE
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN--LKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~--~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      ...+.|++.|+++.+++..  .              .+++++..   ||. +...  +.....+.++++   +++++|.+
T Consensus        14 ~~~~~l~~~G~~~~~~~~~--~--------------~~~~~dglil~GG~-~~~~~~~~~~~~~~~~i~---~~~~PilG   73 (186)
T 2ywj_A           14 EHEEAIKKAGYEAKKVKRV--E--------------DLEGIDALIIPGGE-STAIGKLMKKYGLLEKIK---NSNLPILG   73 (186)
T ss_dssp             HHHHHHHHTTSEEEEECSG--G--------------GGTTCSEEEECCSC-HHHHHHHHHHTTHHHHHH---TCCCCEEE
T ss_pred             HHHHHHHHCCCEEEEECCh--H--------------HhccCCEEEECCCC-chhhhhhhhccCHHHHHH---hcCCcEEE
Confidence            3457788888888776531  1              12222221   663 2211  111223455555   78999999


Q ss_pred             EchhHHHHHHHc
Q 023800           80 ICVFLAVALGSW   91 (277)
Q Consensus        80 iC~g~~~~La~a   91 (277)
                      ||.|.. +|+.+
T Consensus        74 IC~G~Q-ll~~~   84 (186)
T 2ywj_A           74 TCAGMV-LLSKG   84 (186)
T ss_dssp             ETHHHH-HHSSC
T ss_pred             ECHHHH-HHHHH
Confidence            999999 89988

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=88.75  E-value=0.89  Score=37.77  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ...++++++..+++++|.+||-|.. +|+.+
T Consensus        95 ~~~~~lir~a~~~~~PiLGIC~G~Q-ll~~a  124 (254)
T 3fij_A           95 SYEIALVRAALDAGKPIFAICRGMQ-LVNVA  124 (254)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            4478999999999999999999999 89987

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=88.11  E-value=0.28  Score=39.64  Aligned_cols=32  Identities=9%  Similarity=0.138  Sum_probs=27.4

Q ss_pred             cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      +...+.+.|++..++|+++.++|.|+. +|+..
T Consensus        98 ~~~gl~~~l~~~~~~G~p~~G~sAGa~-~l~~~  129 (206)
T 3l4e_A           98 KRTGADKLILEEIAAGKLYIGESAGAV-ITSPN  129 (206)
T ss_dssp             HHHTHHHHHHHHHHTTCEEEEETHHHH-TTSSB
T ss_pred             HHCChHHHHHHHHHcCCeEEEECHHHH-Hhccc
Confidence            456788899999999999999999998 77653

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=87.50  E-value=0.13  Score=41.45  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=41.6

Q ss_pred             hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCccchhccccChHHHHHHHHHHhCCCEEEEEchhH
Q 023800            5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICVFL   84 (277)
Q Consensus         5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~   84 (277)
                      .....|++.|+++.++...  ..+....|+-+ |          |+ .........-....+++...+.++||.+||-|-
T Consensus        17 si~~al~~~G~~~~v~~~~--~~l~~~D~lil-P----------G~-g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~   82 (211)
T 4gud_A           17 SVKFAIERLGYAVTISRDP--QVVLAADKLFL-P----------GV-GTASEAMKNLTERDLIELVKRVEKPLLGICLGM   82 (211)
T ss_dssp             HHHHHHHHTTCCEEEECCH--HHHHHCSEEEE-C----------CC-SCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHH
T ss_pred             HHHHHHHHCCCEEEEECCH--HHHhCCCEEEE-C----------CC-CCHHHHHHHHHhcChHHHHHHcCCCEEEEchhH
Confidence            3456788889988875421  12222222222 1          42 112111111222345677778999999999999


Q ss_pred             HHHHHHcC
Q 023800           85 AVALGSWG   92 (277)
Q Consensus        85 ~~~La~aG   92 (277)
                      . +|+.+.
T Consensus        83 Q-lL~~~~   89 (211)
T 4gud_A           83 Q-LLGKLS   89 (211)
T ss_dssp             H-TTSSEE
T ss_pred             h-HHHHHh
Confidence            9 888764

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=86.75  E-value=3.5  Score=34.38  Aligned_cols=83  Identities=10%  Similarity=0.009  Sum_probs=53.4

Q ss_pred             CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      .|+||+|+  .|.. ......+.+.|+..|++|++++...- +            .+.++  ..+||+||++.-.  .. 
T Consensus         3 ~m~~vLiV--~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~------------~~~~~--L~~yDvIIl~d~~--~~-   62 (259)
T 3rht_A            3 AMTRVLYC--GDTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L------------DVGEL--LAKQDLVILSDYP--AE-   62 (259)
T ss_dssp             ---CEEEE--ESSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B------------CSSHH--HHTCSEEEEESCC--GG-
T ss_pred             CCceEEEE--CCCCchhHHHHHHHHHHhCCceEEEeccccc-c------------cChhH--HhcCCEEEEcCCc--cc-
Confidence            45788888  3432 34556678899999999999876542 1            12233  3579999998522  11 


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEc
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAIC  262 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC  262 (277)
                       .-++...+.|+++.++|.-+..+.
T Consensus        63 -~l~~~~~~~L~~yV~~GGgLi~~g   86 (259)
T 3rht_A           63 -RMTAQAIDQLVTMVKAGCGLVMLG   86 (259)
T ss_dssp             -GBCHHHHHHHHHHHHTTCEEEEEC
T ss_pred             -cCCHHHHHHHHHHHHhCCeEEEec
Confidence             235677778888888887766663

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=85.08  E-value=0.83  Score=38.80  Aligned_cols=29  Identities=0%  Similarity=-0.198  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGS   90 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~   90 (277)
                      +.+.++++++.+++++|.+||.|.. +|+.
T Consensus       106 ~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~  134 (289)
T 2v4u_A          106 LGKLQAISWARTKKIPFLGVXLGMQ-LAVI  134 (289)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence            5788999999999999999999999 8887

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=82.50  E-value=1.5  Score=35.35  Aligned_cols=21  Identities=14%  Similarity=0.066  Sum_probs=18.6

Q ss_pred             HHhCCCEEEEEchhHHHHHHHc
Q 023800           70 QASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        70 ~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ..++++++.+||-|.. +|+.+
T Consensus        81 ~~~~~~PiLGIC~G~Q-ll~~~  101 (212)
T 2a9v_A           81 IDDHNYPILGICVGAQ-FIALH  101 (212)
T ss_dssp             HHHCCSCEEEETHHHH-HHHHH
T ss_pred             HHhCCCCEEEEChHHH-HHHHH
Confidence            3578999999999999 89887

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=82.43  E-value=2.8  Score=39.78  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           62 VLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      .+.+++++..+.+++|.+||-|.. +|+.+
T Consensus       509 ~~~~lI~~a~~~~iPiLGIClG~Q-lLa~a  537 (645)
T 3r75_A          509 RLYAWLRHLIDEGKPFMAVCLSHQ-ILNAI  537 (645)
T ss_dssp             HHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEECHHHH-HHHHH
Confidence            467888988899999999999999 88875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	5e-21
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	6e-19
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	2e-16
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	5e-15
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	8e-16
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	2e-11
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	5e-14
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	6e-05
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	3e-12
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	4e-11
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	1e-10
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	9e-11
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	2e-10
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	9e-11
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	7e-06
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	3e-09
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	2e-05
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	5e-07
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	4e-06

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 85.9 bits (212), Expect = 5e-21
 Identities = 57/119 (47%), Positives = 68/119 (57%), Gaps = 2/119 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA--DKLEILASCQVKLVADMLIDE 217
           S   LV +A GSEE EAV  ID+L R    V  ASVA    L I  S  VKL+AD  + E
Sbjct: 1   SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 60

Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            A   YD+IVLPGG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +  
Sbjct: 61  VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFP 119

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 80.2 bits (197), Expect = 6e-19
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 35/180 (19%)

Query: 1   MEAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDA--------CG 50
            EAV TID+L R G  V  ASV  +  L +    GVK++ADA +    D          G
Sbjct: 15  TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 74

Query: 51  MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------ 98
           + GA   ++S +L   VK+    GR+ AAIC   A  L    +                 
Sbjct: 75  IKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP 134

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEF 145
                          K++T++GPGT ++F + +++ L G+ KA EV+   VM A   + +
Sbjct: 135 AEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYY 194

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
           S + LV +A G+EEME VI +D++RRA   V VA +A K  +  S  V +  D  +++A 
Sbjct: 1   SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 60

Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
           K   YD++VLPGG  GAQ  ++S  +  +LK+Q+       AICA P
Sbjct: 61  KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 107

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 5e-15
 Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 36/173 (20%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---------CGM 51
           ME VI +DV+RR+G  V VA +  +  V     V I  DA + + +            G 
Sbjct: 15  METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 74

Query: 52  PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------------- 98
            GA NL ES  ++ I+K+Q +   L AAIC     AL +  +  G K             
Sbjct: 75  LGAQNLSESAAVKEILKEQENRKGLIAAICA-GPTALLAHEIGFGSKVTTHPLAKDKMMN 133

Query: 99  -------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
                        DG ++T+RGPGT  EF +A+VE L GK  A +V    V++
Sbjct: 134 GGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 186

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 71.6 bits (175), Expect = 8e-16
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
            +I + +A    + E  ++    R      +V A+  D + + +   +K+  D   D   
Sbjct: 2   TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATP-DGMPVTSMGGLKVTPDTSYDALD 60

Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            +  D +V+PGGL   +    +  L  ++K+ ++ +R    ICA+ + +    G+L 
Sbjct: 61  PVDIDALVIPGGLSWEKGT--AADLGGLVKRFRDRDRLVAGICAAASALGG-TGVLN 114

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 43/170 (25%)

Query: 1   MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-------CGMP 52
            E  +     R   G ++V A+ +    V +  G+K+  D                 G  
Sbjct: 15  WEPALLAAAARSYLGVEIVHATPDGMP-VTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
                  +++   +  K+  D     A     A ALG  G+L  +               
Sbjct: 74  SWEKGTAADLGGLV--KRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPA 131

Query: 99  ---------------DGKVVTTRGPGTPMEFVVALVEQL--YGKGKADEV 131
                          DG VVT  G   P+ F V +++ L  +G     E+
Sbjct: 132 YRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAEL 180

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (164), Expect = 5e-14
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 32/146 (21%)

Query: 163 ILVPIAN-----GSEEMEAVIIIDILRRAKANVVVASV----------ADKLEILASCQV 207
           I V ++      GSE  EAV+ +  + R+ A  V  +                +  +  V
Sbjct: 4   IGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNV 63

Query: 208 KLVADML-------IDEAAKLSYDLIVLPGGLGGAQAFAKS----------KKLVNMLKK 250
            + A  +       + +A     D +++PGG G A+  +            ++L  + + 
Sbjct: 64  LIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQA 123

Query: 251 QKESNRPYGAICASPALVLEPHGLLK 276
             ++ +P G +C +PA++ +      
Sbjct: 124 MHQAGKPLGFMCIAPAMLPKIFDFPL 149

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 35/131 (26%)

Query: 1   MEAVITIDVLRRSGADVVVASV-----------------EKQLRVDACHGVKIVADALVS 43
            EAV+T+  + RSGA  V  +                  E +  +     +       ++
Sbjct: 20  HEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA 79

Query: 44  NCR----DACGMPG--------------ATNLKESEVLESIVKKQASDGRLYAAICVFLA 85
                  DA  +PG               +       L+++ +     G+    +C+  A
Sbjct: 80  QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA 139

Query: 86  VALGSWGLLKG 96
           +    +     
Sbjct: 140 MLPKIFDFPLR 150

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
            + + + +     + + I+  L+    +  +       E+ A     L        A  L
Sbjct: 5   VVAILLNDEVRSADLLAILKALKAKGVHAKLLYS-RMGEVTADDGTVLPIAATFAGAPSL 63

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
           + D +++P   G     A +      L +  +  +P      +         +  
Sbjct: 64  TVDAVIVPC--GNIADIADNGDANYYLMEAYKHLKPIALAGDARKF-KATIKIAD 115

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.9 bits (139), Expect = 4e-11
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
           ++L   AN  E++E +     L+     V +AS  ++  I       +  D+  D+    
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASF-ERGTITGKHGYSVKVDLTFDKVNPE 60

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
            +D +VLPGG    +    ++K V++ +K     +P  +IC  P +++   G+L+
Sbjct: 61  EFDALVLPGGRAPER-VRLNEKAVSIARKMFSEGKPVASICHGPQILIS-AGVLR 113

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 34/154 (22%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-------CGMPG 53
           +E +     L+  G +V +AS E+   +   HG  +  D                 G   
Sbjct: 14  VELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRA 72

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
              ++ +E   SI +K  S+G+  A+IC      L S G+L+G K               
Sbjct: 73  PERVRLNEKAVSIARKMFSEGKPVASICH-GPQILISAGVLRGRKGTSYPGIKDDMINAG 131

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVEQL 122
                     DG  V++R P     ++   V+ L
Sbjct: 132 VEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (137), Expect = 9e-11
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 2/116 (1%)

Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEI-LASCQVKLVADMLIDEA 218
           S +I V I +  E+ E     D  R+A   V+         +     +  +  D  IDE 
Sbjct: 1   SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 60

Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
               +D ++LPGG           + V   +    S +P  AIC  P L++    +
Sbjct: 61  TPAEFDALLLPGGHSP-DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVI 115

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 35/156 (22%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVD-ACHGVKIVADALVSNCRDA-------CGMP 52
            E     D  R++G +V+    +    V        +  D  +     A        G  
Sbjct: 15  SEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 74

Query: 53  GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------- 98
               L+      +  +   + G+   AIC      L S  +++G K              
Sbjct: 75  SPDYLRGDNRFVTFTRDFVNSGKPVFAICH-GPQLLISADVIRGRKLTAVKPIIIDVKNA 133

Query: 99  ------------DGKVVTTRGPGTPMEFVVALVEQL 122
                         ++VT+R P     F    +  L
Sbjct: 134 GAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL 169

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 57.9 bits (139), Expect = 9e-11
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 168 ANGSEEMEAVIIIDILRRAKANVVVASV------------ADKLEILASCQVKLVADMLI 215
             G    E  +   + +    +V VAS+             +K    A  +  L     +
Sbjct: 20  KTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 79

Query: 216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273
            +     +D I LPGG G    F  ++ L  +L++  E  R   A+C  P+ ++    
Sbjct: 80  SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATY 137

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 70/194 (36%)

Query: 2   EAVITIDVLRRSGADVVVASVEK------------QLRVDACHGVKIVADALVSNCRDA- 48
           E  +   V +  G DV VAS++             +    A     +   A +S      
Sbjct: 27  EFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHG 86

Query: 49  -------CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL-----GSWGLLKG 96
                   G     +  ++E L+ ++++ A DGR+ AA+C   +  +         ++KG
Sbjct: 87  FDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKG 146

Query: 97  LK---------------------------------------------DGKVVTTRGPGTP 111
                                                          DG ++T + P + 
Sbjct: 147 KTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSS 206

Query: 112 MEFVVALVEQLYGK 125
                 +V  L  +
Sbjct: 207 RSTAEKVVAALEER 220

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 17/115 (14%), Positives = 46/115 (40%), Gaps = 2/115 (1%)

Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
           ++ + IA+G + +        +   +A  +V     + ++ A+    +     ++     
Sbjct: 5   RVAIIIADGYDNVAYDAAYAAISANQAIPLVIGP-RRSKVTAANGSTVQPHHHLEGFRST 63

Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276
             D I +PGG   A+  +K+ + ++ +++     +  GA   +  L +     L 
Sbjct: 64  MVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDL-VAKAIALP 117

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 14/152 (9%), Positives = 30/152 (19%), Gaps = 33/152 (21%)

Query: 1   MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD-------ACGMPG 53
           +        +  + A  +V    +     A          L               G   
Sbjct: 17  VAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA 76

Query: 54  ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
           A  L ++      +++     +   A        +     L  +                
Sbjct: 77  AETLSKNGRALHWIREAFGHLKAIGATGE-AVDLVAKAIALPQVTVSSEAEVHESYGVVT 135

Query: 99  ----------DGKVVTTRGPGTPMEFVVALVE 120
                     D   +     G   EF  A+ +
Sbjct: 136 LKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ 167

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 17/68 (25%), Positives = 30/68 (44%)

Query: 206 QVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
             K +AD++    A   Y  I +PGG G      +S+ +   L+   +++R   ++C  P
Sbjct: 125 NPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGP 184

Query: 266 ALVLEPHG 273
           A  L    
Sbjct: 185 AAFLALRH 192

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 21/125 (16%)

Query: 170 GSEEMEAVIIIDILRRAKANVVVASV---------------------ADKLEILASCQVK 208
           G   +EA+   +  R+    V   S                       D     +     
Sbjct: 24  GVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKT 83

Query: 209 LVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
           L       E     Y + +   G G    + K+K L ++  +   +     A+C  PA+ 
Sbjct: 84  LAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMF 143

Query: 269 LEPHG 273
                
Sbjct: 144 DGLTD 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	99.95
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	99.94
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	99.93
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.92
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.92
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.91
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.91
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.91
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.91
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	99.9
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.85
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.85
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.82
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.8
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.79
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.77
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.76
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.66
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.62
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.59
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.58
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.51
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.49
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.17
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.75
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.64
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	97.57
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.51
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.27
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	97.12
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	96.97
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	96.88
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	96.75
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	96.38
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	95.85
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	94.56
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	94.47
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	94.32
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	94.08
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	93.9
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	93.11
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	92.48
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	89.44
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	89.39
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	88.3
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	88.26
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	85.57
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	83.01
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	81.12

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=211.61  Aligned_cols=137  Identities=40%  Similarity=0.562  Sum_probs=126.8

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccc---cC------CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR---DA------CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~---~~------gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      +|+++|+++|+++||+|+++|++++.+|++++|+.+.+|..++++.   ++      ||..+++.+++++.+.+|||+++
T Consensus        15 ~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~~~~~l~~~lr~~~   94 (186)
T d1p5fa_          15 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQE   94 (186)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccccchHHHHHHHHHhh
Confidence            4889999999999999999999876789999999999999998753   22      87656777889999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHhcCh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLYGK  125 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~  125 (277)
                      ++|++|++||+|++ +||++|||+||+                          |||+|||+|++++++|++++++++.|+
T Consensus        95 ~~~k~i~aiC~G~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~~d~al~li~~l~g~  173 (186)
T d1p5fa_          95 NRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGK  173 (186)
T ss_dssp             HTTCEEEEETTTHH-HHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHHHHHHHHHHHHHCH
T ss_pred             ccccceeecccCcc-hhhhcCCccccccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHHHHHHHHHHHHhcCH
Confidence            99999999999999 999999999998                          999999999999999999999999999


Q ss_pred             hHHHHHhhccccc
Q 023800          126 GKADEVSGARVMR  138 (277)
Q Consensus       126 ~~a~~v~~~~~~~  138 (277)
                      +.|+++++.|+++
T Consensus       174 ~~a~~va~~l~l~  186 (186)
T d1p5fa_         174 EVAAQVKAPLVLK  186 (186)
T ss_dssp             HHHHHHHGGGTCC
T ss_pred             HHHHHHHHhhccC
Confidence            9999999999864

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.7e-29  Score=201.26  Aligned_cols=141  Identities=36%  Similarity=0.541  Sum_probs=127.6

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCC--CceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQ   70 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~--~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~   70 (277)
                      +|+++|+++|+++|++|+++|+.+  +.+|++++|+.+.+|..+++++..        ||.++++.+++++.+.+|||++
T Consensus        15 ~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~   94 (195)
T d2ab0a1          15 TEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQF   94 (195)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHHH
Confidence            489999999999999999999754  347999999999999999887532        8866677788999999999999


Q ss_pred             HhCCCEEEEEchhH-HHHHHHcCCCCCCC-----------------------CCC--eEcCCCCCCHHHHHHHHHHHhcC
Q 023800           71 ASDGRLYAAICVFL-AVALGSWGLLKGLK-----------------------DGK--VVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        71 ~~~g~~i~aiC~g~-~~~La~aGll~g~~-----------------------dg~--~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                      +++||+|++||+|+ + +|+++|||+||+                       |||  +|||+|+++++||+++++|++.|
T Consensus        95 ~~~gk~i~aiC~g~a~-lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~liTa~g~~a~~d~al~lie~l~g  173 (195)
T d2ab0a1          95 HRSGRIVAAICAAPAT-VLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVG  173 (195)
T ss_dssp             HHTTCEEEEETHHHHH-HTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGHHHHHHHHHHHHTC
T ss_pred             hhccceeeeeeccchh-hhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeEEECCCHHHHHHHHHHHHHHHcC
Confidence            99999999999995 6 899999999999                       776  79999999999999999999999


Q ss_pred             hhHHHHHhhcccccccCC
Q 023800          125 KGKADEVSGARVMRANHG  142 (277)
Q Consensus       125 ~~~a~~v~~~~~~~~~~~  142 (277)
                      ++.|+++++.|++++...
T Consensus       174 ~e~A~~va~~l~~~~~~~  191 (195)
T d2ab0a1         174 REKAHEVASQLVMAAGIY  191 (195)
T ss_dssp             HHHHHHHHTTTTCCTTSC
T ss_pred             HHHHHHHHHHhcCCcchh
Confidence            999999999999987653

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=1.1e-26  Score=184.60  Aligned_cols=119  Identities=28%  Similarity=0.391  Sum_probs=110.2

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      +|++.|+++|+++||+|+++|+++ .+|++++|+.+.+|.++++++..        || .+......++++.+||+++++
T Consensus        14 ~E~~~p~~~l~~ag~~v~~vs~~~-~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg-~~~~~~~~~~~~~~~l~~~~~   91 (166)
T d1g2ia_          14 VELIYPYHRLKEEGHEVYIASFER-GTITGKHGYSVKVDLTFDKVNPEEFDALVLPGG-RAPERVRLNEKAVSIARKMFS   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSS-EEEECTTSCEEEECEEGGGCCGGGCSEEEECCB-SHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCC-ceEeecCCcEEeccccHHHcCcccccEEEEecc-cchhhhccChHHHHHHHHHHh
Confidence            489999999999999999999997 79999999999999999987532        66 466667789999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      ++++|++||+|++ +|+++|||+||+                         |||+|||+|+.++.+|+++++++|
T Consensus        92 ~~k~i~aiC~G~~-~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_          92 EGKPVASICHGPQ-ILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             TTCCEEEETTTTH-HHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHHHHH
T ss_pred             cCCeeeeccccch-hhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHHHHHHHHhh
Confidence            9999999999999 999999999998                         999999999999999999999987

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=4.4e-26  Score=181.01  Aligned_cols=113  Identities=25%  Similarity=0.412  Sum_probs=107.4

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK  240 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~  240 (277)
                      +||+|+++|||++.|+..|+++|+++|++++++|++++ +|+++.|+.+.+|.+++++++.+||+|+||||. .......
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~-~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGR-APERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-eEeecCCcEEeccccHHHcCcccccEEEEeccc-chhhhcc
Confidence            58999999999999999999999999999999999998 999999999999999999988899999999996 4666778


Q ss_pred             CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ++++.+||+++++++++|++||+|++ +||++|||+
T Consensus        79 ~~~~~~~l~~~~~~~k~i~aiC~G~~-~La~aGlL~  113 (166)
T d1g2ia_          79 NEKAVSIARKMFSEGKPVASICHGPQ-ILISAGVLR  113 (166)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEETTTTH-HHHHHTCCT
T ss_pred             ChHHHHHHHHHHhcCCeeeeccccch-hhhhcCccc
Confidence            99999999999999999999999999 999999997

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5e-26  Score=183.97  Aligned_cols=116  Identities=40%  Similarity=0.567  Sum_probs=108.2

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhcc-CCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK-LSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~-~~~D~livpGG~~~~~~~  238 (277)
                      +|||+|+++|||++.|+..|+++|+++|++++++|++++.+|++++|+.+.+|..+++++. .+||+|+||||...++.+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            4899999999999999999999999999999999998765899999999999999988754 479999999997667778


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++.+.+|||++++++++|+++|+|++ +||++|||+
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~-~La~aglL~  117 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGF  117 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHH-HHHHTTCST
T ss_pred             cchHHHHHHHHHhhccccceeecccCcc-hhhhcCCcc
Confidence            8899999999999999999999999999 999999997

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.92  E-value=2.8e-25  Score=179.59  Aligned_cols=127  Identities=28%  Similarity=0.457  Sum_probs=112.3

Q ss_pred             CchhhHHHHHHh-CCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRR-SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~-~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      +|+..+.+.|++ .|++|.++|+++ .+|++++|+.++||..+++++..        ||. +.. ...++++++|||+++
T Consensus        15 ~E~~~~~~~l~~~~g~~v~~vs~~~-~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~-~~~-~~~~~~l~~~lr~~~   91 (188)
T d2fexa1          15 WEPALLAAAARSYLGVEIVHATPDG-MPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SWE-KGTAADLGGLVKRFR   91 (188)
T ss_dssp             TSSHHHHHHHHHHSCCEEEEEETTS-SCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HHH-HTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCcEEEEEeCCC-CcEEcCCCCEEeecCchHHCChhhccEEEecCCc-ccc-ccccHHHHHHHHHHH
Confidence            588999999987 799999999997 69999999999999999987532        775 333 356788999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      +++++|+|||+|++ +||++|||+||+                             |||+|||+| ++++||+++++++|
T Consensus        92 ~~~~~i~aiC~g~~-~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G-~aa~d~al~ii~~L  169 (188)
T d2fexa1          92 DRDRLVAGICAAAS-ALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAG-SAPVSFAVEILKSL  169 (188)
T ss_dssp             HTTCEEEEETHHHH-HHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECT-TCHHHHHHHHHHHT
T ss_pred             HhCCEEEEecchhH-HHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCC-chHHHHHHHHHHHh
Confidence            99999999999999 999999999998                             899999998 46899999999998


Q ss_pred             --cChhHHHHHh
Q 023800          123 --YGKGKADEVS  132 (277)
Q Consensus       123 --~g~~~a~~v~  132 (277)
                        .|++.++++.
T Consensus       170 ~~~~~e~~~~~~  181 (188)
T d2fexa1         170 GLFGPEAEAELQ  181 (188)
T ss_dssp             TCCSHHHHHHHG
T ss_pred             cccCHHHHHHHH
Confidence              5888888873

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.5e-25  Score=174.41  Aligned_cols=115  Identities=23%  Similarity=0.359  Sum_probs=106.8

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccC-cEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ-VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g-~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +|||+|+++|||++.|+..|+++|+++|+++.++|+++++++.++.| +++.+|.+++++.+++||+|+||||+ ++..+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l   79 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYL   79 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHH
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhh
Confidence            47999999999999999999999999999999999987658887765 89999999999988899999999996 46668


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++++.+||+++++++|+|+++|+|++ +|+++|||+
T Consensus        80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~-~La~~glL~  116 (170)
T d1oi4a1          80 RGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIR  116 (170)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEETTTHH-HHHHHTCCT
T ss_pred             ccChHHHHHHHHHhhcCCeeeecccchH-HHhhhhhcc
Confidence            8899999999999999999999999999 999999997

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.91  E-value=1.6e-24  Score=170.07  Aligned_cols=114  Identities=11%  Similarity=0.108  Sum_probs=107.8

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +++||+|+++|||+..|+..|+++|+++|+++.+++++.+ ++++..|..+.++.++.+.++.+||+|+||||..  ..+
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~--~~l   78 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNI--ADI   78 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCSCT--HHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-cccccceeEEeeeeeeccCCcccCCEEEeeCCch--HHH
Confidence            4689999999999999999999999999999999999998 9999999999999999998888999999999953  458


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++++.+||+++++++|+|+++|+|++ +|+.+|+|+
T Consensus        79 ~~~~~~~~~i~e~~~~~K~I~aic~g~~-~La~agl~~  115 (156)
T d1p80a1          79 ADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIAD  115 (156)
T ss_dssp             HTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGTTTCCS
T ss_pred             hcchHHHHHHHHHHHcCCeEEEECchHH-HHHHcCCCc
Confidence            8899999999999999999999999999 999999986

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.91  E-value=8.8e-25  Score=176.17  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=110.3

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      +++||+|+++|||++.|+..|++.|+.+|++++++|++++ +++++.|..+.++.++++.++.+||++++|||......+
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~   80 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL   80 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-cccccccccccccccccccccccceEEEEeecccccccc
Confidence            4689999999999999999999999999999999999998 999999999999999999888899999999997667778


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++++.+||+++++++|+|++||+|++ +||++|+|+
T Consensus        81 ~~~~~~~~~l~~~~~~~k~i~aic~G~~-~La~aGlL~  117 (184)
T d1sy7a1          81 SKNGRALHWIREAFGHLKAIGATGEAVD-LVAKAIALP  117 (184)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHH-HHHHHHCCT
T ss_pred             ccccchhHHHHHHHhcCCceEEechHHH-HHHHcCCCC
Confidence            8999999999999999999999999999 999999997

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.8e-24  Score=172.20  Aligned_cols=121  Identities=21%  Similarity=0.270  Sum_probs=110.0

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCC-CEEecCccccccccC--------CCccchhccccChHHHHHHHHHH
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHG-VKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQA   71 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g-~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~   71 (277)
                      .|++.|+++|+++|++|+++|+.++.+++++.| +.+.+|..++++...        ||+ ++..++.++++++||++++
T Consensus        15 ~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l~~~~~~~~~i~~~~   93 (170)
T d1oi4a1          15 SEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYLRGDNRFVTFTRDFV   93 (170)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhhccChHHHHHHHHHh
Confidence            388999999999999999999987678898765 899999999987532        774 6777889999999999999


Q ss_pred             hCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           72 SDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        72 ~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                      +++++|++||+|++ +|+++|+|+||+                          |||+|||+|+.++.+|++++++.|.
T Consensus        94 ~~~k~i~aiC~g~~-~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~~~fa~~~i~~Lg  170 (170)
T d1oi4a1          94 NSGKPVFAICHGPQ-LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG  170 (170)
T ss_dssp             HTTCCEEEETTTHH-HHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             hcCCeeeecccchH-HHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhHHHHHHHHHHHhC
Confidence            99999999999999 999999999999                          7889999999999999999999874

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.91  E-value=1.9e-24  Score=174.69  Aligned_cols=113  Identities=21%  Similarity=0.369  Sum_probs=105.2

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHh-CCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      |+||+++++|||+++|+..+.+.|++ +|+++.++|++++ +|++++|+.+.||..++++++.+||+|+||||.. .. .
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~-~~-~   77 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-WE-K   77 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-HH-H
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-cEEcCCCCEEeecCchHHCChhhccEEEecCCcc-cc-c
Confidence            57999999999999999999999987 7999999999998 9999999999999999999888999999999974 33 3


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ..++++.+|||++++++++|+++|+|++ +||++|||+
T Consensus        78 ~~~~~l~~~lr~~~~~~~~i~aiC~g~~-~La~aGlL~  114 (188)
T d2fexa1          78 GTAADLGGLVKRFRDRDRLVAGICAAAS-ALGGTGVLN  114 (188)
T ss_dssp             TCCCCCHHHHHHHHHTTCEEEEETHHHH-HHHHTTTTT
T ss_pred             cccHHHHHHHHHHHHhCCEEEEecchhH-HHHHcCccC
Confidence            5678899999999999999999999999 999999997

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=8.4e-24  Score=171.77  Aligned_cols=116  Identities=47%  Similarity=0.634  Sum_probs=106.8

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC--ceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK--LEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~--~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      +++..|+++|||++.|+..|+++|+++|++++++|..++  .+|++++|+.+.+|..++++++.+||+|+||||....+.
T Consensus         1 ~~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~   80 (195)
T d2ab0a1           1 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC   80 (195)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred             CceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcccc
Confidence            368999999999999999999999999999999997543  378999999999999999998889999999999766777


Q ss_pred             hhcCHHHHHHHHHHHHcCCcEEEEchh-hHHhhhhCCCCC
Q 023800          238 FAKSKKLVNMLKKQKESNRPYGAICAS-PALVLEPHGLLK  276 (277)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G-~~~lLa~aGlL~  276 (277)
                      +..++++.+|||++++++|+|+++|+| ++ +|+++|||+
T Consensus        81 l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~-lLa~aGlL~  119 (195)
T d2ab0a1          81 FRDSTLLVETVKQFHRSGRIVAAICAAPAT-VLVPHDIFP  119 (195)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETHHHHH-HTTTTTSSS
T ss_pred             ccccHHHHHHHHHHhhccceeeeeeccchh-hhhhcCccC
Confidence            888999999999999999999999999 58 899999997

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.85  E-value=6.9e-22  Score=158.96  Aligned_cols=119  Identities=13%  Similarity=0.121  Sum_probs=107.1

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHHh
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQAS   72 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~~   72 (277)
                      .|+..|+++|+++|++++++|+++ .+++++.|..+.+|.++++.+..        ||..+...+..++.+++||+++++
T Consensus        17 ~e~~~~~~~l~~ag~~v~ivs~~~-~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~~~~~~~l~~~~~   95 (184)
T d1sy7a1          17 VAYDAAYAAISANQAIPLVIGPRR-SKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFG   95 (184)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCS-SCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEEecC-CcccccccccccccccccccccccceEEEEeeccccccccccccchhHHHHHHHh
Confidence            378999999999999999999997 68999999999999999887532        665556677899999999999999


Q ss_pred             CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHH
Q 023800           73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQ  121 (277)
Q Consensus        73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~  121 (277)
                      ++|+|++||+|++ +|+++|+|+||+                         |||++|++++.+..+|+..+.++
T Consensus        96 ~~k~i~aic~G~~-~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~~f~~~i~~h  168 (184)
T d1sy7a1          96 HLKAIGATGEAVD-LVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQH  168 (184)
T ss_dssp             TTCEEEEETTHHH-HHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHTC
T ss_pred             cCCceEEechHHH-HHHHcCCCCCceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHHHHHHHHHHh
Confidence            9999999999999 999999999998                         99999999999988998777654

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=5.6e-22  Score=163.90  Aligned_cols=124  Identities=23%  Similarity=0.285  Sum_probs=101.7

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCC------------CEEecCccccccccC--------CCccchhccccCh
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHG------------VKIVADALVSNCRDA--------CGMPGATNLKESE   61 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g------------~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~   61 (277)
                      |+++|+++|+++||+|+++|+.++.+......            ..+..+..+++++..        ||++++..+++++
T Consensus        27 E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~  106 (221)
T d1u9ca_          27 EFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNE  106 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCH
T ss_pred             HHHHHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhH
Confidence            89999999999999999999987533221111            123344455555432        8887788899999


Q ss_pred             HHHHHHHHHHhCCCEEEEEchhHHHHHHHcC------CCCCCC-------------------------------------
Q 023800           62 VLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK-------------------------------------   98 (277)
Q Consensus        62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~-------------------------------------   98 (277)
                      .+.++++++++++|+|+||||||+ +|+.++      |++||+                                     
T Consensus       107 ~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~p~~~e~~~~~~~~~p~~~~~~l~~~Ga~y~~~~  185 (221)
T d1u9ca_         107 TLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGG  185 (221)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCS
T ss_pred             HHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeeccCCHHHhhcccccchhhhHHHHHHHCCCEEeecC
Confidence            999999999999999999999999 999865      788877                                     


Q ss_pred             --------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800           99 --------DGKVVTTRGPGTPMEFVVALVEQLYGKG  126 (277)
Q Consensus        99 --------dg~~iT~~g~~~~~~~a~~li~~l~g~~  126 (277)
                              |||+||++||.++.+|++.++++|..++
T Consensus       186 ~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k~  221 (221)
T d1u9ca_         186 KWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  221 (221)
T ss_dssp             TTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcCC
Confidence                    8999999999999999999999997653

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.7e-21  Score=160.91  Aligned_cols=121  Identities=20%  Similarity=0.283  Sum_probs=100.4

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceee--cC-C------------------CCEEecCccccccccC--------CCcc
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVD--AC-H------------------GVKIVADALVSNCRDA--------CGMP   52 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~--~~-~------------------g~~v~~d~~~~~~~~~--------gG~~   52 (277)
                      |+++|+++|+++||+|+++|++|+.++.  +. .                  ...+..+..+++++..        ||++
T Consensus        29 E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ydav~ipGG~g  108 (236)
T d1qvwa_          29 EALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHG  108 (236)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGCSEEEECCSTT
T ss_pred             HHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHHHHHhcccChhhCCHhHCCEEEEeCCcc
Confidence            8999999999999999999998743321  00 0                  1124445566666532        8887


Q ss_pred             chhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc-------CCCCCCC---------------------------
Q 023800           53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK---------------------------   98 (277)
Q Consensus        53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~---------------------------   98 (277)
                      ++..+++++.+.+++++++++||+|+||||||. +|+.+       +|++||+                           
T Consensus       109 ~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~~~~~~g~~ll~Gk~vT~f~~~ee~~~~~~~~~~~~~~~~le  187 (236)
T d1qvwa_         109 TLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVE  187 (236)
T ss_dssp             HHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTCSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHH
T ss_pred             chhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHHhhcccccccccCceeccCCcHHHhhccccccccCCCcccHH
Confidence            788899999999999999999999999999998 88876       5898888                           


Q ss_pred             -----------------------CCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800           99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLY  123 (277)
Q Consensus        99 -----------------------dg~~iT~~g~~~~~~~a~~li~~l~  123 (277)
                                             |||+||+++|.++..|+..+++.|.
T Consensus       188 ~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         188 DVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             HHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             HHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence                                   9999999999999999999999874

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1e-19  Score=149.30  Aligned_cols=115  Identities=23%  Similarity=0.361  Sum_probs=93.9

Q ss_pred             CCeEEEEec-----CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc-----------ccCc-------EEEeCcchh
Q 023800          160 SPQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----------SCQV-------KLVADMLID  216 (277)
Q Consensus       160 ~~kV~ill~-----~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~-----------~~g~-------~i~~~~~~~  216 (277)
                      |+||+|++.     ||++..|+..|++.|+++|++++++|++++ .+..           +.+.       ....+..++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            589999974     899999999999999999999999999876 3221           1111       122334688


Q ss_pred             hhccCCccEEEEcCCcchHHhhh----------cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800          217 EAAKLSYDLIVLPGGLGGAQAFA----------KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  276 (277)
Q Consensus       217 ~~~~~~~D~livpGG~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~  276 (277)
                      ++++++||+|++|||++...++.          .++.+.+++++++++||+|++||+|++ +|++++.++
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~  148 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFP  148 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSC
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccC
Confidence            88889999999999987665553          358999999999999999999999999 999987654

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.79  E-value=9.3e-20  Score=150.40  Aligned_cols=114  Identities=24%  Similarity=0.332  Sum_probs=96.5

Q ss_pred             CCCeEEEEecC----------CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc-------------cCcEEEeCcch
Q 023800          159 NSPQILVPIAN----------GSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-------------CQVKLVADMLI  215 (277)
Q Consensus       159 ~~~kV~ill~~----------g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~-------------~g~~i~~~~~~  215 (277)
                      |+|||+|++.+          |++..|+..|+++|+++|++|+++|+.++ ++...             ....+..+..+
T Consensus         1 M~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg-~~~~d~~~~~~~~~~~~~~~~~l~~~~~l   79 (221)
T d1u9ca_           1 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL   79 (221)
T ss_dssp             CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCC-cceeccCccccccchhHHHHHHhhCCCCh
Confidence            46899999975          89999999999999999999999999987 43211             11223445567


Q ss_pred             hhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCC
Q 023800          216 DEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL  274 (277)
Q Consensus       216 ~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGl  274 (277)
                      +++++++||+|+||||+++...++.++.+.++++++++++|+|++||||+. +|+.+++
T Consensus        80 ~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~  137 (221)
T d1u9ca_          80 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATY  137 (221)
T ss_dssp             CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBC
T ss_pred             hHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccce-eeecccc
Confidence            778888999999999997778899999999999999999999999999999 8998763

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2e-19  Score=151.97  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=97.2

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCC----------------EEecCcccccc-----c--cC------CCc
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGV----------------KIVADALVSNC-----R--DA------CGM   51 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~----------------~v~~d~~~~~~-----~--~~------gG~   51 (277)
                      .|+++|+++|+++||+|+++|++|+.+....+.+                .++....++++     .  ++      ||+
T Consensus        72 ~E~~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~~~~~~L~dv~~~~~~~~dYdav~iPGGh  151 (279)
T d1n57a_          72 IETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGH  151 (279)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSG
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHHhCchhhhhhhhcccccccccEEEecCCc
Confidence            3899999999999999999999985332111111                01111111211     1  11      998


Q ss_pred             cchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc----CCCCCCC-----------------------------
Q 023800           52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW----GLLKGLK-----------------------------   98 (277)
Q Consensus        52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a----Gll~g~~-----------------------------   98 (277)
                      +++..+.+++++.++|++++++||+|+||||||. +|..+    ++++||+                             
T Consensus       152 G~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa-~Ll~a~~g~~l~~Gk~vT~f~~~eE~~~~~~~~~p~~~~~~le~~  230 (279)
T d1n57a_         152 GALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEE  230 (279)
T ss_dssp             GGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHcCCcceeccccch-hhhhcccCCcccCCeEEeecCCHHHhccchhccCcccccccHHHH
Confidence            7789999999999999999999999999999999 88776    5899988                             


Q ss_pred             -------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800           99 -------------------DGKVVTTRGPGTPMEFVVALVEQLYG  124 (277)
Q Consensus        99 -------------------dg~~iT~~g~~~~~~~a~~li~~l~g  124 (277)
                                         |||+||+++|.++..|+..++++|..
T Consensus       231 L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         231 LKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             HHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence                               89999999999999999999998863

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.5e-19  Score=146.82  Aligned_cols=112  Identities=18%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             CCeEEEEecC------------CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc---------------------cC
Q 023800          160 SPQILVPIAN------------GSEEMEAVIIIDILRRAKANVVVASVADKLEILAS---------------------CQ  206 (277)
Q Consensus       160 ~~kV~ill~~------------g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~---------------------~g  206 (277)
                      +|||+|++.+            |++..|+..|+++|+++|++|+++|++|+.++--.                     .+
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHH
Confidence            5799999964            88899999999999999999999999887322100                     01


Q ss_pred             cEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          207 VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       207 ~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+..+..++++++++||+|++|||++.+.+++.++.+.+++++++++||+|++||||+. +|+.+
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~  146 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGL  146 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTC
T ss_pred             HHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHH
Confidence            234455678888889999999999998788899999999999999999999999999999 88775

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.1e-16  Score=134.97  Aligned_cols=111  Identities=21%  Similarity=0.291  Sum_probs=88.3

Q ss_pred             CCeEEEEec--------------CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc-cCc----------------E
Q 023800          160 SPQILVPIA--------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-CQV----------------K  208 (277)
Q Consensus       160 ~~kV~ill~--------------~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~-~g~----------------~  208 (277)
                      .+||+|++.              .|++..|+..|++.|+++||+|+++|++|+ ++.-. ..+                .
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~-~~~~D~~s~~~~d~~~~~~~~~~~~~  122 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL  122 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCCcCccccccccHHHHHHHHhHHHH
Confidence            479999998              389999999999999999999999999998 43211 110                0


Q ss_pred             EEeCcchhhh-----ccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          209 LVADMLIDEA-----AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       209 i~~~~~~~~~-----~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      +.....++++     +.++||+|++|||++....+..++.+.++|++++++||+|++||||+. +|..+
T Consensus       123 ~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa-~Ll~a  190 (279)
T d1n57a_         123 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLAL  190 (279)
T ss_dssp             HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGG
T ss_pred             HhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccch-hhhhc
Confidence            1101112222     345899999999998788899999999999999999999999999999 78765

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=8.3e-17  Score=131.67  Aligned_cols=96  Identities=24%  Similarity=0.248  Sum_probs=73.6

Q ss_pred             CchhhHHHHHHhCCCeEEEEeeCCCceeec-----------CC-------CCEEecCccccccccC--------CCccch
Q 023800            1 MEAVITIDVLRRSGADVVVASVEKQLRVDA-----------CH-------GVKIVADALVSNCRDA--------CGMPGA   54 (277)
Q Consensus         1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----------~~-------g~~v~~d~~~~~~~~~--------gG~~~~   54 (277)
                      .|+++|+++|+|+|++|+++|++++ ++..           +.       .+.+..+.++++++..        ||+++.
T Consensus        20 ~E~~~~~~~L~raG~~v~~~sp~~~-~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~   98 (217)
T d1vhqa_          20 HEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAA   98 (217)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCC-ccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccH
Confidence            3899999999999999999999863 3221           11       1122233456666432        887666


Q ss_pred             hcc----------ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 023800           55 TNL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK   98 (277)
Q Consensus        55 ~~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~   98 (277)
                      .++          +.++.+++++++|+++||+|+|||+||+ +|++++.+++++
T Consensus        99 ~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~~~~  151 (217)
T d1vhqa_          99 KNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFPLRL  151 (217)
T ss_dssp             HTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSCCEE
T ss_pred             HHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccCCCe
Confidence            555          3468999999999999999999999999 999999888875

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.59  E-value=3.9e-15  Score=115.84  Aligned_cols=114  Identities=11%  Similarity=0.099  Sum_probs=95.2

Q ss_pred             chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHHhC
Q 023800            2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQASD   73 (277)
Q Consensus         2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~~~   73 (277)
                      |+..|++.|+++|+++.+++++. .++++.+|..+.+|.++++.+..        ||.  ...++.++++++||++++++
T Consensus        18 e~~~~~~~l~~ag~~v~~v~~~~-~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~--~~~l~~~~~~~~~i~e~~~~   94 (156)
T d1p80a1          18 DLLAILKALKAKGVHAKLLYSRM-GEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN--IADIADNGDANYYLMEAYKH   94 (156)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESSS-SEEECTTSCEEECCEETTTSCGGGCSEEEECCSC--THHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEEeccc-ccccccceeEEeeeeeeccCCcccCCEEEeeCCc--hHHHhcchHHHHHHHHHHHc
Confidence            78999999999999999999997 58999999999999999887532        774  33578999999999999999


Q ss_pred             CCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHh
Q 023800           74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL  122 (277)
Q Consensus        74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l  122 (277)
                      +|+|+++|+|++ +|+.+|+++++.. .+++..+..  -.|.-.+++.+
T Consensus        95 ~K~I~aic~g~~-~La~agl~~~~~~-gv~~~~~~~--~~~~~~f~~~~  139 (156)
T d1p80a1          95 LKPIALAGDARK-FKATIKIADQGEE-GIVEADSAD--GSFMDELLTLM  139 (156)
T ss_dssp             TCCEEEEGGGGG-GGGTTTCCSSCCT-TEEEESSCC--HHHHHHHHHHH
T ss_pred             CCeEEEECchHH-HHHHcCCCcCCCC-eEEEcCCcc--HHHHHHHHHHH
Confidence            999999999999 9999999998754 477766554  34555555544

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.58  E-value=4.3e-08  Score=78.34  Aligned_cols=88  Identities=20%  Similarity=0.245  Sum_probs=65.4

Q ss_pred             CCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-
Q 023800          158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-  236 (277)
Q Consensus       158 ~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-  236 (277)
                      ..++||+|+.++| +.   .....+|++.|+++.++..                   .+++  +++|.||+|||..... 
T Consensus         4 ~~~mkIgii~~~G-n~---~s~~~al~~~G~~~~~v~~-------------------~~~l--~~~D~lIlPGG~~~~~~   58 (202)
T d1q7ra_           4 QSNMKIGVLGLQG-AV---REHVRAIEACGAEAVIVKK-------------------SEQL--EGLDGLVLPGGESTTMR   58 (202)
T ss_dssp             CCCCEEEEESCGG-GC---HHHHHHHHHTTCEEEEECS-------------------GGGG--TTCSEEEECCCCHHHHH
T ss_pred             ccCCEEEEEECCC-CH---HHHHHHHHHCCCcEEEECC-------------------HHHH--hcCCEEEECCCCcHHHH
Confidence            3568999999987 33   3345889999999888731                   1222  4689999999863221 


Q ss_pred             hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .......+.++|+++.+.++++.+||.|.. +|++
T Consensus        59 ~~l~~~~l~~~I~~~~~~gkPiLGIClG~Q-ll~~   92 (202)
T d1q7ra_          59 RLIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAK   92 (202)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEE
T ss_pred             HHhhhhHHHHHHhhhccccceeeeeehhhH-Hhhh
Confidence            122335678899999999999999999999 8875

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.51  E-value=8.7e-08  Score=76.08  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=64.7

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAF  238 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~  238 (277)
                      |+||+|+-++|.. .|   .+.+|+++|+++.++...                   +++  +++|.||+|||.... ...
T Consensus         1 m~~igv~~~~G~~-~~---~~~al~~~G~~~~~i~~~-------------------~~l--~~~D~lIlPGG~~~~~~~~   55 (195)
T d2nv0a1           1 MLTIGVLGLQGAV-RE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL   55 (195)
T ss_dssp             CCEEEEECSSSCC-HH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred             CcEEEEEecCChH-HH---HHHHHHHCCCcEEEECCH-------------------HHH--hhCCEEEECCCCccHHHHH
Confidence            5799999998733 33   367899999998887421                   122  358999999985321 222


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .....+.++|+++.++++++.+||.|.. +|++.
T Consensus        56 ~~~~~~~~~I~~~~~~g~pilGIC~G~Q-ll~~~   88 (195)
T d2nv0a1          56 IDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAKE   88 (195)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSBC
T ss_pred             hhhchhcchhhhhhhhcceeeeccccHH-HHHhh
Confidence            3344667899999999999999999999 89874

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.49  E-value=2.6e-07  Score=76.36  Aligned_cols=98  Identities=13%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800          159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA  237 (277)
Q Consensus       159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~  237 (277)
                      +.+||+||.+||.+ +.|..   .+|+.+|+++..|..+.               ..-...+..+||+|++|||+..-+.
T Consensus         5 ~kpkvaVl~~pGtNcd~e~~---~Af~~aG~~~~~v~~~d---------------l~~~~~~L~~~~~lvipGGFSygD~   66 (262)
T d1t3ta2           5 ARPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSD---------------LLGGRIGLGNFHALVACGGFSYGDV   66 (262)
T ss_dssp             CCCEEEEEECTTBCCHHHHH---HHHHHTTCEEEEEEHHH---------------HHHTSCCGGGCSEEEECCBCGGGGT
T ss_pred             CCCeEEEEeCCCCCcHHHHH---HHHHHcCCceEEEEeee---------------cccCcccccccceEEEecccccccc
Confidence            34799999999953 55544   58888999998886541               0001122457999999998754443


Q ss_pred             h----------hcCHHHHHHHHHHHH-cCCcEEEEchhhHHhhhhCCCC
Q 023800          238 F----------AKSKKLVNMLKKQKE-SNRPYGAICASPALVLEPHGLL  275 (277)
Q Consensus       238 ~----------~~~~~~~~~l~~~~~-~~~~i~aiC~G~~~lLa~aGlL  275 (277)
                      +          ..+..+...+.+++. .+++|.+||.|.+ +|.++|+|
T Consensus        67 l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQ-iL~elg~l  114 (262)
T d1t3ta2          67 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLREL  114 (262)
T ss_dssp             TSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGG
T ss_pred             ccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHH-HHHHhccc
Confidence            3          224456667777665 5899999999999 99999754

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=2.1e-06  Score=69.63  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=67.5

Q ss_pred             CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      ..+||+|+-...++  +.....++|+..|++++++-...+             +...++  .++||.|||+||..+....
T Consensus         2 ~~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~-------------~~~p~~--l~~~d~iii~Ggp~~~~d~   64 (230)
T d1o1ya_           2 HHVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKG-------------EKLERP--LEEYSLVVLLGGYMGAYEE   64 (230)
T ss_dssp             CCCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSC--GGGCSEEEECCCSCCTTCT
T ss_pred             CceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCC-------------CcCCcc--hhhCCEEEEcCCCcccccc
Confidence            35789888655444  344678899999999998865432             111122  2469999999985332211


Q ss_pred             ---hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 ---AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ---~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                         .-.....++|++..+.+++|.+||-|.. +||++
T Consensus        65 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lla~a  100 (230)
T d1o1ya_          65 EKYPFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  100 (230)
T ss_dssp             TTCTHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHhcceEEEeecCHH-HHHHH
Confidence               1235678899999999999999999999 88874

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=5.8e-05  Score=59.25  Aligned_cols=50  Identities=26%  Similarity=0.511  Sum_probs=38.1

Q ss_pred             CCccEEEEcC-Ccc--hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          221 LSYDLIVLPG-GLG--GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       221 ~~~D~livpG-G~~--~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..+|.||+|| |..  ....+ ....+.+.|+++.++++||.+||-|.. +|++.
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~Q-lL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHH-TTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEeccee-EEeee
Confidence            3589999999 631  12223 233678899999999999999999999 89853

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00022  Score=57.22  Aligned_cols=124  Identities=17%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             cChhHHHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEE
Q 023800          123 YGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEIL  202 (277)
Q Consensus       123 ~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~  202 (277)
                      .|-+++++|+-.=.|.|.....-...+.......-....||+++=+ |..-.    .+..+++.|..+.++..+-     
T Consensus         2 ~~~~l~~~Vstk~~y~w~~~~~~~~~~~~~~~~~~~~~~~i~~~D~-G~k~~----ilr~l~~~~~~~~v~p~~~-----   71 (228)
T d1a9xb2           2 NGMDLAKEVTTAEAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDF-GAKRN----ILRMLVDRGCRLTIVPAQT-----   71 (228)
T ss_dssp             TTCBCHHHHSCSSCEEECCCCCBTTTBSCCCCCGGGCCEEEEEEES-SCCHH----HHHHHHHTTEEEEEEETTC-----
T ss_pred             CCCcccccccCCCCEEcCCCccccccCccccccCCCCcceEEEEeC-CCcHH----hHhHHHhcCceEEEcCCCC-----
Confidence            3556778887776666655432111111111000112235555532 33322    4488999999998887653     


Q ss_pred             cccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          203 ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       203 ~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                                 +.+++...++|.|++.+|.+.+.   +.....+.++++.+.+.||.+||-|-. +|+.
T Consensus        72 -----------~~~~i~~~~pdgivlS~GPg~P~---~~~~~~~~~~~~~~~~iPILGIClG~Q-lia~  125 (228)
T d1a9xb2          72 -----------SAEDVLKMNPDGIFLSNGPGDPA---PCDYAITAIQKFLETDIPVFGICLGHQ-LLAL  125 (228)
T ss_dssp             -----------CHHHHHTTCCSEEEECCCSBCST---TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHH
T ss_pred             -----------CHHHHHhcCCCEEEEeCCCCccc---cchhHHHHHHHHHhCCCCEEEEEcChH-HHHH
Confidence                       34555445789999999965332   455677889999999999999999999 8886

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.51  E-value=0.00018  Score=57.04  Aligned_cols=88  Identities=18%  Similarity=0.148  Sum_probs=54.0

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCe-EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--  237 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~-v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--  237 (277)
                      +||+|+.++|-. .|   ...+|+++|++ +++.-                 ....+++  +++|.||||||......  
T Consensus         3 ikIGvl~l~G~~-~~---~~~al~~lg~~~~~v~~-----------------~~~~~~l--~~~D~lIlPGgg~~~~~~~   59 (218)
T d2abwa1           3 ITIGVLSLQGDF-EP---HINHFIKLQIPSLNIIQ-----------------VRNVHDL--GLCDGLVIPGGESTTVRRC   59 (218)
T ss_dssp             EEEEEECTTSCC-HH---HHHHHHTTCCTTEEEEE-----------------ECSHHHH--HTCSEEEECCSCHHHHHHH
T ss_pred             CEEEEEeCCCcH-HH---HHHHHHHcCCCceEEEE-----------------eCCHHHH--hhCCEEEEcCCCccHHHHH
Confidence            589999987644 22   24678888752 22211                 1123444  46899999996322211  


Q ss_pred             -hhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhhhC
Q 023800          238 -FAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       238 -~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa~a  272 (277)
                       +.....+.+.|.++. ..+++|.+||.|.. +|++.
T Consensus        60 ~~~~~~~~~~~i~~~~~~~gkPilGIC~G~Q-lL~~~   95 (218)
T d2abwa1          60 CAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   95 (218)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             HHHHhccchHHHHHHHHHcCCeEEEecHHHH-HHHHh
Confidence             122233444455544 57999999999999 89764

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.27  E-value=0.00038  Score=54.30  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             CCeEEEEec-CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800          160 SPQILVPIA-NGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF  238 (277)
Q Consensus       160 ~~kV~ill~-~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~  238 (277)
                      |+||+|+=+ +++.    ......|++.|.++.++..+                ....+.  .+||.||++||.....  
T Consensus         1 m~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d----------------~~~~~~--~~~dgiIl~Gg~~~~~--   56 (196)
T d2a9va1           1 MLKIYVVDNGGQWT----HREWRVLRELGVDTKIVPND----------------IDSSEL--DGLDGLVLSGGAPNID--   56 (196)
T ss_dssp             CCBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETT----------------SCGGGG--TTCSEEEEEEECSCGG--
T ss_pred             CCEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCC----------------CCHHHH--hcCCcEEEeccccccc--
Confidence            467877643 2232    24457788888887776432                223333  5799999999854322  


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .....+..+++...++++|+.+||.|.. +|+.+
T Consensus        57 ~~~~~~~~l~~~~~~~~~PilGIC~G~Q-ll~~~   89 (196)
T d2a9va1          57 EELDKLGSVGKYIDDHNYPILGICVGAQ-FIALH   89 (196)
T ss_dssp             GTGGGHHHHHHHHHHCCSCEEEETHHHH-HHHHH
T ss_pred             cccchhhhHHHHHhhcCceEEEeehhhh-hhhhc
Confidence            1233445555566678999999999999 89875

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=97.12  E-value=0.00066  Score=55.98  Aligned_cols=111  Identities=11%  Similarity=0.075  Sum_probs=64.7

Q ss_pred             CCCeEEEEe-cCCCchhhHHHHHHHHHhCC--CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          159 NSPQILVPI-ANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       159 ~~~kV~ill-~~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      +++||+||= .|.-..+|. -+...|....  +++.++....-....+.....-.--.+++++...+||++||.|+....
T Consensus        18 rpL~I~iLNlMP~k~~TE~-qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~   96 (281)
T d2ghra1          18 RALKIAILNLMPTKQETEA-QLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVET   96 (281)
T ss_dssp             CCEEEEEECCCSSHHHHHH-HHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTT
T ss_pred             ceeEEEEEecCCcchhhHH-HHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCc
Confidence            457899983 233334443 1333343332  466666665431111211111112245777777889999999985322


Q ss_pred             H---hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          236 Q---AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       236 ~---~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .   ...--+++.++++...++.+.+.+||-|+. +++.
T Consensus        97 ~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQ-a~~~  134 (281)
T d2ghra1          97 LSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQ-AGLY  134 (281)
T ss_dssp             SCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHH-HHHH
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCeEEEcHHHH-HHHH
Confidence            1   122237899999999999999999999999 6764

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.97  E-value=0.00058  Score=53.08  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcE
Q 023800          179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPY  258 (277)
Q Consensus       179 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i  258 (277)
                      ..+.|++.|.++.++..+..               .++++..-.+|.|++.||...+... .......++.+..+.++|+
T Consensus        17 i~~~l~~lG~~~~vi~~d~~---------------~~~~i~~~~~~gvilsgGp~~~~~~-~~~~~~~~i~~~~~~~~Pi   80 (195)
T d1qdlb_          17 IAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTPI   80 (195)
T ss_dssp             HHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSH-HHHTTHHHHHHHHTTTSCE
T ss_pred             HHHHHHhCCCeEEEEeCCCC---------------CHHHHHhhCCCccccCCCCCccccc-cccccchhhhhhhcCCCCE
Confidence            35789999999988865421               2333333357999999986433321 1223445677788899999


Q ss_pred             EEEchhhHHhhhhC
Q 023800          259 GAICASPALVLEPH  272 (277)
Q Consensus       259 ~aiC~G~~~lLa~a  272 (277)
                      .+||-|-. +|+.+
T Consensus        81 LGIClG~Q-ll~~~   93 (195)
T d1qdlb_          81 LGVCLGHQ-AIGYA   93 (195)
T ss_dssp             EEETHHHH-HHHHH
T ss_pred             EEeehhhh-hhhhc
Confidence            99999999 88763

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.88  E-value=0.00082  Score=51.78  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP  257 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~  257 (277)
                      .....|++.|+++.++..+.                .+++++.-.+|.|+++||..    .........++++..+.++|
T Consensus        15 ~i~~~L~~~G~~~~v~~~~~----------------~~~~~~~~~~~gvilsgg~~----~~~~~~~~~~i~~~~~~~~P   74 (188)
T d1wl8a1          15 RIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGPS----LENTGNCEKVLEHYDEFNVP   74 (188)
T ss_dssp             HHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCSC----TTCCTTHHHHHHTGGGTCSC
T ss_pred             HHHHHHHHCCCeEEEEeCCC----------------CHHHHhhhccceeeeccCcc----cccccccccccccccccccc
Confidence            35688999999998885432                24444445689999998853    22345667788888899999


Q ss_pred             EEEEchhhHHhhhh
Q 023800          258 YGAICASPALVLEP  271 (277)
Q Consensus       258 i~aiC~G~~~lLa~  271 (277)
                      +.+||-|-. +|+.
T Consensus        75 iLGIClG~Q-~l~~   87 (188)
T d1wl8a1          75 ILGICLGHQ-LIAK   87 (188)
T ss_dssp             EEEETHHHH-HHHH
T ss_pred             eeehhhhhh-hhhh
Confidence            999999999 8876

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=96.75  E-value=0.0009  Score=51.94  Aligned_cols=90  Identities=16%  Similarity=0.261  Sum_probs=58.4

Q ss_pred             EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800          165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL  244 (277)
Q Consensus       165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~  244 (277)
                      |++.|.++.... -..+.|++.|+++.++..+..            .+...+++...++|+|++.+|...+.    +...
T Consensus         3 iliiD~~DSFt~-ni~~~l~~lG~~~~v~~~~~~------------~~~~~~~l~~~~~~~iils~Gpg~~~----~~~~   65 (192)
T d1i7qb_           3 ILLLDNVDSFTY-NLVDQLRASGHQVVIYRNQIG------------AEVIIERLQHMEQPVLMLSPGPGTPS----EAGC   65 (192)
T ss_dssp             EEEEECSCSSHH-HHHHHHHHTTCEEEEEETTSC------------HHHHHHHHHHCSSEEEEECCCSSCGG----GSTT
T ss_pred             EEEEECCCcHHH-HHHHHHHHCCCeEEEEeCCCc------------ccccHHHHHhcCCCeEEecCcccccc----cccc
Confidence            344565543222 357789999999998876542            11222333334689999877754333    2223


Q ss_pred             HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          245 VNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      ..++++..++++||.+||-|-. +||.+
T Consensus        66 ~~~i~~~l~~~iPiLGIClG~Q-~la~~   92 (192)
T d1i7qb_          66 MPELLQRLRGQLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             HHHHHHHHBTTBCEEEETHHHH-HHHHH
T ss_pred             chhhHHhhhcCccEEeeeHHHH-HHHHH
Confidence            4567788889999999999999 88863

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.0088  Score=45.57  Aligned_cols=87  Identities=23%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--h
Q 023800          161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--F  238 (277)
Q Consensus       161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--~  238 (277)
                      |||+|+=+---+.   .....+|++.|+++.+++..                   +++  ..+|.+++||+......  .
T Consensus         1 Mki~IiD~G~gN~---~si~~~l~~lg~~~~i~~~~-------------------~~i--~~~d~lIlpG~g~~~~~~~~   56 (195)
T d1ka9h_           1 MKALLIDYGSGNL---RSAAKALEAAGFSVAVAQDP-------------------KAH--EEADLLVLPGQGHFGQVMRA   56 (195)
T ss_dssp             CEEEEECSSCSCH---HHHHHHHHHTTCEEEEESST-------------------TSC--SSCSEEEECCCSCHHHHHHT
T ss_pred             CEEEEEeCCCcHH---HHHHHHHHHCCCeEEEECCH-------------------HHH--HHHhhhhcCCCccccchhhh
Confidence            4677653322222   34677788899998876321                   122  35799999996432221  2


Q ss_pred             hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                      .....+...+......++++.++|.|.. +|++.
T Consensus        57 ~~~~~~~~~~~~~~~~g~pilGiClG~q-ll~~~   89 (195)
T d1ka9h_          57 FQESGFVERVRRHLERGLPFLGICVGMQ-VLYEG   89 (195)
T ss_dssp             TSSSCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred             ccccCCcccccccccccchhhhhhhhhh-eeeec
Confidence            2233566778888899999999999999 88853

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0021  Score=50.12  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=57.4

Q ss_pred             CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800          160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA  239 (277)
Q Consensus       160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~  239 (277)
                      .+||+|+=+ |..-  .......++..|+++++++.+..                .++.....+|.+++.||...+..  
T Consensus         5 ~~kI~IiD~-G~~~--~~~I~r~lr~lg~~~~I~~~d~~----------------~~~~~~~~~~giils~gp~~~~~--   63 (205)
T d1gpma2           5 KHRILILDF-GSQY--TQLVARRVRELGVYCELWAWDVT----------------EAQIRDFNPSGIILSGGPESTTE--   63 (205)
T ss_dssp             SSEEEEEEC-SCTT--HHHHHHHHHHTTCEEEEEESCCC----------------HHHHHHHCCSEEEECCCSSCTTS--
T ss_pred             cCeEEEEEC-CchH--HHHHHHHHHHCCCEEEEECCCCC----------------HHHHhhcCCCeEEecCCCCccch--
Confidence            468888743 2111  12345788999999988865432                22222246799999988543322  


Q ss_pred             cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800          240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH  272 (277)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a  272 (277)
                        .....+++...+.++|+.+||-|-. +||++
T Consensus        64 --~~~~~~~~~~~~~~~PiLGIClG~Q-lla~~   93 (205)
T d1gpma2          64 --ENSPRAPQYVFEAGVPVFGVCYGMQ-TMAMQ   93 (205)
T ss_dssp             --TTCCCCCGGGGTSSSCEEEETHHHH-HHHHH
T ss_pred             --hhhhhHHHHHHhCCCCEEEeccchh-hhhhh
Confidence              1222345566778999999999999 89863

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.031  Score=44.14  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=47.6

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc---cccChHHHHHHHHHHhCCCEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYAA   79 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~a   79 (277)
                      ..+.|++.|+++.++-...+..+.          ..+++++..   ||..+...   .+-...+.+++++..+++++|.+
T Consensus        20 ~~~~l~~~g~~~~~~~~~~~~~~p----------~~l~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilG   89 (230)
T d1o1ya_          20 MEDIFREKNWSFDYLDTPKGEKLE----------RPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLG   89 (230)
T ss_dssp             HHHHHHHTTCEEEEECGGGTCCCS----------SCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHCCCEEEEEECCCCCcCC----------cchhhCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEE
Confidence            456788889888887654311111          112222222   65322221   11235678899999999999999


Q ss_pred             EchhHHHHHHHc
Q 023800           80 ICVFLAVALGSW   91 (277)
Q Consensus        80 iC~g~~~~La~a   91 (277)
                      ||.|.. +|+.+
T Consensus        90 IC~G~Q-lla~a  100 (230)
T d1o1ya_          90 ICLGSQ-MLAKV  100 (230)
T ss_dssp             ETHHHH-HHHHH
T ss_pred             eecCHH-HHHHH
Confidence            999999 89886

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.025  Score=45.28  Aligned_cols=75  Identities=20%  Similarity=0.414  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHH
Q 023800          176 AVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ  251 (277)
Q Consensus       176 ~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~  251 (277)
                      +....+.|..|+    ..+.+...+.. .+.         +...+.  ..++|.|+||||++    .+--+.-+..++.+
T Consensus        19 Y~Sv~eaL~ha~~~~~~~v~i~wi~s~-~~e---------~~~~~~--L~~~dGIlvPGGFG----~RG~eGki~ai~yA   82 (258)
T d1s1ma1          19 YKSVIEALKHGGLKNRVSVNIKLIDSQ-DVE---------TRGVEI--LKGLDAILVPGGFG----YRGVEGMITTARFA   82 (258)
T ss_dssp             GHHHHHHHHHHHHHHTEEEEEEEEEHH-HHH---------HHCTTT--TTTCSEEEECCCCS----STTHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhHHhcCCeEEEEEEccc-ccc---------cccccc--ccccccEEeecccC----cCCHHHHHHHHHHH
Confidence            466778888764    34555443322 111         011122  35799999999975    23456778889999


Q ss_pred             HHcCCcEEEEchhhH
Q 023800          252 KESNRPYGAICASPA  266 (277)
Q Consensus       252 ~~~~~~i~aiC~G~~  266 (277)
                      .+++.|..+||-|-.
T Consensus        83 Ren~iPfLGIClGmQ   97 (258)
T d1s1ma1          83 RENNIPYLGICLGMQ   97 (258)
T ss_dssp             HHTTCCEEEETHHHH
T ss_pred             HHcCccHHHHHHHHH
Confidence            999999999999998

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.32  E-value=0.0097  Score=46.10  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccch-hccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ....|++.|+++.++....  .              +++++..   ||.... ........+.++|+++.++|+++.+||
T Consensus        21 ~~~al~~~G~~~~~v~~~~--~--------------l~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIC   84 (202)
T d1q7ra_          21 HVRAIEACGAEAVIVKKSE--Q--------------LEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTC   84 (202)
T ss_dssp             HHHHHHHTTCEEEEECSGG--G--------------GTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred             HHHHHHHCCCcEEEECCHH--H--------------HhcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeee
Confidence            3567888898888875221  1              2222221   653211 112234567789999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      .|.. +|++.
T Consensus        85 lG~Q-ll~~~   93 (202)
T d1q7ra_          85 AGLI-LLAKR   93 (202)
T ss_dssp             THHH-HHEEE
T ss_pred             hhhH-Hhhhh
Confidence            9999 88764

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.08  E-value=0.052  Score=43.67  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             HHHHHHhCCCeEEEEeeCC---Cc-eeecCCCCEEecCccccccccCCCccchhccccChHHHHHHHHHHh-CCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEK---QL-RVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQAS-DGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~---~~-~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~-~g~~i~ai   80 (277)
                      ....|+.+|+++..+..+.   ++ ....-.++.+.=-.+..|... +|.........+..+...+.+|.. .|++|.+|
T Consensus        23 ~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~-ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGI  101 (262)
T d1t3ta2          23 MAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLG-AGEGWAKSILFNHRVRDEFETFFHRPQTLALGV  101 (262)
T ss_dssp             HHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTS-TTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEE
T ss_pred             HHHHHHHcCCceEEEEeeecccCcccccccceEEEecccccccccc-chhHHHhhhhhhhHHHHHHHHHhhcCCceEEee
Confidence            4567889999999987752   01 111112222221111111111 121111122345666667777765 69999999


Q ss_pred             chhHHHHHHHcC-CCCCCC
Q 023800           81 CVFLAVALGSWG-LLKGLK   98 (277)
Q Consensus        81 C~g~~~~La~aG-ll~g~~   98 (277)
                      |.|-. +|.+.| |+.|..
T Consensus       102 CNGfQ-iL~elg~l~pg~~  119 (262)
T d1t3ta2         102 CNGCQ-MMSNLRELIPGSE  119 (262)
T ss_dssp             THHHH-HHHTTGGGSTTCT
T ss_pred             chHHH-HHHHhcccCCCcc
Confidence            99999 999986 666544

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=93.90  E-value=0.014  Score=44.85  Aligned_cols=69  Identities=16%  Similarity=0.204  Sum_probs=45.3

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      .+..|++.|+++.++....  .              +++++..   ||... .........+.++|+++.++|+++.+||
T Consensus        16 ~~~al~~~G~~~~~i~~~~--~--------------l~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC   79 (195)
T d2nv0a1          16 HIHAIEACGAAGLVVKRPE--Q--------------LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTC   79 (195)
T ss_dssp             HHHHHHHTTCEEEEECSGG--G--------------GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred             HHHHHHHCCCcEEEECCHH--H--------------HhhCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeecc
Confidence            3567888999888885321  1              2222221   55311 1122234456788999999999999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      -|.. +|++.
T Consensus        80 ~G~Q-ll~~~   88 (195)
T d2nv0a1          80 AGLI-ILAKE   88 (195)
T ss_dssp             HHHH-HHSBC
T ss_pred             ccHH-HHHhh
Confidence            9999 88765

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.082  Score=42.96  Aligned_cols=79  Identities=19%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh---hhcCHHHHHHHHHHHH-
Q 023800          178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNMLKKQKE-  253 (277)
Q Consensus       178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~---~~~~~~~~~~l~~~~~-  253 (277)
                      ..++++..+|.++..+-.+..             +..+++. .+..|.|++|||......   ....+.+.++...... 
T Consensus        29 sYvk~ie~aGa~vvpi~~~~~-------------~~~~~~~-l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~   94 (288)
T d1l9xa_          29 SYVKYLESAGARVVPVRLDLT-------------EKDYEIL-FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDD   94 (288)
T ss_dssp             HHHHHHHHTTCEEEEECSSCC-------------HHHHHHH-HHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEECCCCC-------------HHHHHHH-HhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHh
Confidence            345667777777665544322             1112221 134699999998532111   1112334444443333 


Q ss_pred             -cCCcEEEEchhhHHhhhh
Q 023800          254 -SNRPYGAICASPALVLEP  271 (277)
Q Consensus       254 -~~~~i~aiC~G~~~lLa~  271 (277)
                       ++.||.+||-|-. +|+.
T Consensus        95 ~~~~PilGIC~G~Q-ll~~  112 (288)
T d1l9xa_          95 GDYFPVWGTCLGFE-ELSL  112 (288)
T ss_dssp             TCCCCEEEETHHHH-HHHH
T ss_pred             hCCCCeEEEcHHHH-HHHH
Confidence             4469999999999 7864

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.48  E-value=0.067  Score=42.51  Aligned_cols=76  Identities=26%  Similarity=0.343  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHH
Q 023800          176 AVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ  251 (277)
Q Consensus       176 ~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~  251 (277)
                      +....++|..|+    .++.+.-.+.. .+.        .+...+.  ..++|.|+||||++    .+--+.-+..++.+
T Consensus        19 Y~Si~eAL~hA~~~~~~~v~i~wi~s~-~l~--------~~~~~~~--L~~~dGIlvPGGFG----~rG~eGki~ai~yA   83 (250)
T d1vcoa1          19 YLSLLEALRHAGIKNRARVEVKWVDAE-SLE--------AADLEEA--FRDVSGILVPGGFG----VRGIEGKVRAAQYA   83 (250)
T ss_dssp             THHHHHHHHHHHHHTTEEEEEEEEEGG-GC----------CCHHHH--TTTCSCEEECCCCS----STTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHhcCCeEEEEEEcch-hcc--------hhhHHHH--HhcCCeEEecCCCC----ccchHHHHHHHHHH
Confidence            456778887764    34544443332 111        1111222  35789999999975    23345667778888


Q ss_pred             HHcCCcEEEEchhhH
Q 023800          252 KESNRPYGAICASPA  266 (277)
Q Consensus       252 ~~~~~~i~aiC~G~~  266 (277)
                      .+++.|..+||-|-.
T Consensus        84 Ren~iPfLGIClGmQ   98 (250)
T d1vcoa1          84 RERKIPYLGICLGLQ   98 (250)
T ss_dssp             HHTTCCEEEETHHHH
T ss_pred             HHcchhHHHHHHHHH
Confidence            899999999999998

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.44  E-value=0.15  Score=38.68  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=41.4

Q ss_pred             HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800            7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAIC   81 (277)
Q Consensus         7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC   81 (277)
                      ++.|++.|.++.++..+. ....           .++....+     ||...+.. ..+.....++.+..+.++++.+||
T Consensus        18 ~~~l~~lG~~~~vi~~d~-~~~~-----------~i~~~~~~gvilsgGp~~~~~-~~~~~~~~~i~~~~~~~~PiLGIC   84 (195)
T d1qdlb_          18 AQIVGELGSYPIVIRNDE-ISIK-----------GIERIDPDRLIISPGPGTPEK-REDIGVSLDVIKYLGKRTPILGVC   84 (195)
T ss_dssp             HHHHHHTTCEEEEEETTT-SCHH-----------HHHHHCCSEEEECCCSSCTTS-HHHHTTHHHHHHHHTTTSCEEEET
T ss_pred             HHHHHhCCCeEEEEeCCC-CCHH-----------HHHhhCCCccccCCCCCcccc-ccccccchhhhhhhcCCCCEEEee
Confidence            566888999988886442 1110           01111111     45222221 112233445667788899999999


Q ss_pred             hhHHHHHHHc
Q 023800           82 VFLAVALGSW   91 (277)
Q Consensus        82 ~g~~~~La~a   91 (277)
                      -|-. +|+.+
T Consensus        85 lG~Q-ll~~~   93 (195)
T d1qdlb_          85 LGHQ-AIGYA   93 (195)
T ss_dssp             HHHH-HHHHH
T ss_pred             hhhh-hhhhc
Confidence            9999 88865

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.30  E-value=0.34  Score=36.16  Aligned_cols=68  Identities=12%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      ..+.|++.|+++.++..+.  .+.           .+.....+     || ++.   ..+.....++++..+.++++.+|
T Consensus        16 i~~~L~~~G~~~~v~~~~~--~~~-----------~~~~~~~~gvilsgg-~~~---~~~~~~~~~i~~~~~~~~PiLGI   78 (188)
T d1wl8a1          16 IWRTLRYLGVETKIIPNTT--PLE-----------EIKAMNPKGIIFSGG-PSL---ENTGNCEKVLEHYDEFNVPILGI   78 (188)
T ss_dssp             HHHHHHHTTCEEEEEETTC--CHH-----------HHHHTCCSEEEECCC-SCT---TCCTTHHHHHHTGGGTCSCEEEE
T ss_pred             HHHHHHHCCCeEEEEeCCC--CHH-----------HHhhhccceeeeccC-ccc---ccccccccccccccccccceeeh
Confidence            3567888899988875432  111           00111111     33 222   34556778889999999999999


Q ss_pred             chhHHHHHHHc
Q 023800           81 CVFLAVALGSW   91 (277)
Q Consensus        81 C~g~~~~La~a   91 (277)
                      |-|-. +|+.+
T Consensus        79 ClG~Q-~l~~~   88 (188)
T d1wl8a1          79 CLGHQ-LIAKF   88 (188)
T ss_dssp             THHHH-HHHHH
T ss_pred             hhhhh-hhhhh
Confidence            99999 88875

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.26  E-value=0.44  Score=37.07  Aligned_cols=94  Identities=13%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             CCCeEEEEecC-CCchh-h-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800          159 NSPQILVPIAN-GSEEM-E-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA  235 (277)
Q Consensus       159 ~~~kV~ill~~-g~~~~-e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~  235 (277)
                      ..+||+++-+= +.... + .....+.|+..+.+++.+.....               ..+.+  .+.|+|++.||.. .
T Consensus        30 ~~~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~---------------~~~~l--~~ad~I~v~GGn~-~   91 (229)
T d1fyea_          30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVAD---------------PLAAI--EKAEIIIVGGGNT-F   91 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSC---------------HHHHH--HHCSEEEECCSCH-H
T ss_pred             CCCeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEeccccc---------------HHHHH--hhCCEEEEcCCCH-H
Confidence            34678887331 11222 2 23445667777888776643221               12222  3579999999963 2


Q ss_pred             Hh--hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800          236 QA--FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP  271 (277)
Q Consensus       236 ~~--~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~  271 (277)
                      .-  ......+.+.|++.+++|+++++...|+. ++..
T Consensus        92 ~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~-v~~~  128 (229)
T d1fyea_          92 QLLKESRERGLLAPMADRVKRGALYIGWSAGAN-LACP  128 (229)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-HTSS
T ss_pred             HHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHh-hcCc
Confidence            21  12234678899999999999999999998 7764

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.57  E-value=0.5  Score=35.59  Aligned_cols=30  Identities=20%  Similarity=0.128  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           61 EVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      ..+..+++...++++++.+||-|-. +|+.+
T Consensus        60 ~~~~~l~~~~~~~~~PilGIC~G~Q-ll~~~   89 (196)
T d2a9va1          60 DKLGSVGKYIDDHNYPILGICVGAQ-FIALH   89 (196)
T ss_dssp             GGHHHHHHHHHHCCSCEEEETHHHH-HHHHH
T ss_pred             chhhhHHHHHhhcCceEEEeehhhh-hhhhc
Confidence            4456666666788999999999999 89886

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=83.01  E-value=0.19  Score=38.10  Aligned_cols=72  Identities=19%  Similarity=0.167  Sum_probs=42.4

Q ss_pred             HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800            6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI   80 (277)
Q Consensus         6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai   80 (277)
                      .++.|++.|+++.++..+........         .+...+.+     || ++..   .+.....++++..++++++.+|
T Consensus        16 i~~~l~~lG~~~~v~~~~~~~~~~~~---------~l~~~~~~~iils~G-pg~~---~~~~~~~~i~~~l~~~iPiLGI   82 (192)
T d1i7qb_          16 LVDQLRASGHQVVIYRNQIGAEVIIE---------RLQHMEQPVLMLSPG-PGTP---SEAGCMPELLQRLRGQLPIIGI   82 (192)
T ss_dssp             HHHHHHHTTCEEEEEETTSCHHHHHH---------HHHHCSSEEEEECCC-SSCG---GGSTTHHHHHHHHBTTBCEEEE
T ss_pred             HHHHHHHCCCeEEEEeCCCcccccHH---------HHHhcCCCeEEecCc-cccc---cccccchhhHHhhhcCccEEee
Confidence            35678889999988875431100000         01111111     44 2322   1222344567788899999999


Q ss_pred             chhHHHHHHHc
Q 023800           81 CVFLAVALGSW   91 (277)
Q Consensus        81 C~g~~~~La~a   91 (277)
                      |-|-. +|+.+
T Consensus        83 ClG~Q-~la~~   92 (192)
T d1i7qb_          83 CLGHQ-AIVEA   92 (192)
T ss_dssp             THHHH-HHHHH
T ss_pred             eHHHH-HHHHH
Confidence            99999 89875

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.12  E-value=0.85  Score=35.36  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=27.7

Q ss_pred             cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800           59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSW   91 (277)
Q Consensus        59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a   91 (277)
                      +.....+.++++.+.+.||.+||-|-. +|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~iPILGIClG~Q-lia~~  126 (228)
T d1a9xb2          95 PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  126 (228)
T ss_dssp             TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             cchhHHHHHHHHHhCCCCEEEEEcChH-HHHHH
Confidence            345678889999999999999999999 88886