Citrus Sinensis ID: 023831

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIYV
ccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccc
ccccccHHHHHHHHHccccccccHHccccccEEEEEEEcccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHEccHHHHHHHHHHHcHHHHHHHHHcccccc
MYGTQSKRDLALELQAqipflrpsiharrANITVKFqdlygftvegnvddvnVLNEVREKVREQGRVWWALEAskganwylqpqiaSISEGIALKSSLKLSSLANAITLKKLIrkgippvlrpkvwfslsgaakkkstvpesyyndltkavegkvtpatkqidhdlprtfpghpwldtpdghaTLRRVLVGYsfrdsdvgycQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVndcytnnlsgchvEQRVFKDLLVKQCPRYALVYEEFLDIYV
mygtqskrdLALELQAQipflrpsihaRRANITVKFQDLYGFtvegnvddvnvLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKklirkgippvlrPKVWFslsgaakkkstvpesyynDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIYV
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIAlksslklsslANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIYV
***********LELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK****VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIY*
*************************************DLYGFTVEGNVD****************************NWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKA*****TPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIYV
********DLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIYV
****QSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIY*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEFLDIYV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q28CB1 943 TBC1 domain family member yes no 0.608 0.178 0.398 2e-28
Q6ZT07 1266 TBC1 domain family member yes no 0.547 0.119 0.435 2e-28
D2H0G5 923 TBC1 domain family member no no 0.590 0.176 0.391 4e-28
Q9BYX2 928 TBC1 domain family member no no 0.590 0.175 0.391 8e-28
Q3UYK3 1264 TBC1 domain family member yes no 0.547 0.119 0.428 1e-27
Q3U0J8 965 TBC1 domain family member no no 0.605 0.173 0.419 1e-27
Q9UPU7 963 TBC1 domain family member no no 0.583 0.167 0.428 7e-27
A6QP29 925 TBC1 domain family member no no 0.590 0.176 0.391 3e-26
B1AVH7 922 TBC1 domain family member no no 0.590 0.176 0.385 4e-26
Q5SVR0 1263 TBC1 domain family member no no 0.576 0.125 0.401 9e-26
>sp|Q28CB1|TBD2B_XENTR TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b PE=2 SV=1 Back     alignment and function desciption
 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 5/173 (2%)

Query: 103 LANAITLKKLIRKGIPPVLRPKVW--FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATK 160
           +A +  LK L+R GIP   R ++W  F+     K K      Y+  L +    K  PA+K
Sbjct: 629 MACSPELKALVRNGIPHEHRSRMWKWFTNLHIKKLKDEAAPGYFQSLLQNALEKQNPASK 688

Query: 161 QIDHDLPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKT 218
           QI+ DL RT P +    +P  +G   LR VL+ YS+R+ D+GYCQG+N +AA+ LL +  
Sbjct: 689 QIELDLMRTLPNNKHYTSPTSEGIQKLRNVLLAYSWRNPDIGYCQGINRLAAIALLYL-D 747

Query: 219 EEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271
           +EDAFW L  ++E  +  D YT  L G  V+QRVFKDL+ ++ PR    +E++
Sbjct: 748 QEDAFWCLVTIVEAFMPRDYYTKTLLGSQVDQRVFKDLMNEKLPRLCAHFEQY 800
May act as a GTPase-activating protein.
Xenopus tropicalis (taxid: 8364)
>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2 Back     alignment and function description
>sp|D2H0G5|TBD2A_AILME TBC1 domain family member 2A OS=Ailuropoda melanoleuca GN=TBC1D2 PE=3 SV=1 Back     alignment and function description
>sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3 Back     alignment and function description
>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2 Back     alignment and function description
>sp|Q3U0J8|TBD2B_MOUSE TBC1 domain family member 2B OS=Mus musculus GN=Tbc1d2b PE=1 SV=2 Back     alignment and function description
>sp|Q9UPU7|TBD2B_HUMAN TBC1 domain family member 2B OS=Homo sapiens GN=TBC1D2B PE=1 SV=2 Back     alignment and function description
>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1 Back     alignment and function description
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|Q5SVR0|TBC9B_MOUSE TBC1 domain family member 9B OS=Mus musculus GN=Tbc1d9b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
255583042 398 conserved hypothetical protein [Ricinus 0.981 0.680 0.892 1e-144
449441672 395 PREDICTED: TBC1 domain family member 2A- 0.985 0.688 0.905 1e-144
225446987 398 PREDICTED: TBC1 domain family member 2A 0.960 0.665 0.901 1e-142
224131770 399 predicted protein [Populus trichocarpa] 0.981 0.679 0.878 1e-141
297833578 400 RabGAP/TBC domain-containing protein [Ar 0.981 0.677 0.867 1e-140
18398086 400 RabGAP/TBC domain-containing protein [Ar 0.981 0.677 0.870 1e-140
224068867 399 predicted protein [Populus trichocarpa] 0.981 0.679 0.863 1e-139
224113351 399 predicted protein [Populus trichocarpa] 0.981 0.679 0.859 1e-138
356499495 395 PREDICTED: TBC1 domain family member 2A- 0.949 0.663 0.875 1e-137
356554560 395 PREDICTED: TBC1 domain family member 2A- 0.949 0.663 0.875 1e-136
>gi|255583042|ref|XP_002532289.1| conserved hypothetical protein [Ricinus communis] gi|223528023|gb|EEF30104.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/271 (89%), Positives = 258/271 (95%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MY T +KR+++L+ Q QIP LRPSIH+RRAN+TVKFQDLYGFTVEGNVDDVN+LNEVREK
Sbjct: 1   MYKTHTKREVSLDFQPQIPILRPSIHSRRANLTVKFQDLYGFTVEGNVDDVNILNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQPQ+ SI+EGIALKSSLKLS+LANAITLK+LIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQPQVTSIAEGIALKSSLKLSTLANAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK+T ATKQIDHDLPRTFPGHPWLDTP+
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKITAATKQIDHDLPRTFPGHPWLDTPE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRYALVYEEF 271
           NNLSGCHVEQRVFKDLL KQCPR A+  EE 
Sbjct: 241 NNLSGCHVEQRVFKDLLPKQCPRIAVHLEEL 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449441672|ref|XP_004138606.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] gi|449490052|ref|XP_004158494.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225446987|ref|XP_002266264.1| PREDICTED: TBC1 domain family member 2A [Vitis vinifera] gi|297739137|emb|CBI28788.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131770|ref|XP_002321174.1| predicted protein [Populus trichocarpa] gi|222861947|gb|EEE99489.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297833578|ref|XP_002884671.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330511|gb|EFH60930.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398086|ref|NP_566323.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|145332002|ref|NP_001078123.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|98960973|gb|ABF58970.1| At3g07890 [Arabidopsis thaliana] gi|110737642|dbj|BAF00761.1| putative GTPase activator protein [Arabidopsis thaliana] gi|332641094|gb|AEE74615.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332641095|gb|AEE74616.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224068867|ref|XP_002302845.1| predicted protein [Populus trichocarpa] gi|222844571|gb|EEE82118.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113351|ref|XP_002332603.1| predicted protein [Populus trichocarpa] gi|222834457|gb|EEE72934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499495|ref|XP_003518575.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max] Back     alignment and taxonomy information
>gi|356554560|ref|XP_003545613.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2077472 400 AT3G07890 [Arabidopsis thalian 0.978 0.675 0.844 7.2e-123
ZFIN|ZDB-GENE-100922-148 946 tbc1d2b "TBC1 domain family, m 0.586 0.171 0.431 7.2e-29
UNIPROTKB|F1NUZ2 964 Gga.54340 "Uncharacterized pro 0.583 0.167 0.440 4.2e-28
UNIPROTKB|D4A091 1029 Tbc1d9 "Protein Tbc1d9" [Rattu 0.547 0.146 0.435 3.4e-27
UNIPROTKB|F1PHW7 1199 TBC1D9 "Uncharacterized protei 0.547 0.125 0.435 3.4e-27
UNIPROTKB|J9NY91 1264 TBC1D9 "Uncharacterized protei 0.547 0.119 0.435 3.7e-27
UNIPROTKB|J9P174 1266 TBC1D9 "Uncharacterized protei 0.547 0.119 0.435 3.7e-27
UNIPROTKB|Q6ZT07 1266 TBC1D9 "TBC1 domain family mem 0.547 0.119 0.435 3.7e-27
UNIPROTKB|F1MS95 1226 TBC1D9 "Uncharacterized protei 0.547 0.123 0.428 4.5e-27
RGD|1308221 1262 Tbc1d9 "TBC1 domain family, me 0.547 0.119 0.435 4.7e-27
TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
 Identities = 228/270 (84%), Positives = 241/270 (89%)

Query:     1 MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
             M+G QS+RDL +ELQ+QIP LRPSIHARRANI VKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct:     1 MFGIQSRRDLTMELQSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query:    61 VREQGRVWWALEASKGANWYLQPQIASISEGIAXXXXXXXXXXANAITLKKLIRKGIPPV 120
             VR QGRVWWALEASKGANWYLQP+I  I +GIA           NAITLK+LIRKGIPPV
Sbjct:    61 VRNQGRVWWALEASKGANWYLQPEILLIGDGIALKTSLKLSTLTNAITLKRLIRKGIPPV 120

Query:   121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
             LRPKVWFSLSGAAKKKSTVPESYY+DLTKAVEG VTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct:   121 LRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGHPWLDTPE 180

Query:   181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
             GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV DCYT
Sbjct:   181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYT 240

Query:   241 NNLSGCHVEQRVFKDLLVKQCPRYALVYEE 270
              NLSGCHVEQRVFKDLL ++C R A   E+
Sbjct:   241 TNLSGCHVEQRVFKDLLAQKCSRIATHLED 270
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
ZFIN|ZDB-GENE-100922-148 tbc1d2b "TBC1 domain family, member 2B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUZ2 Gga.54340 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D4A091 Tbc1d9 "Protein Tbc1d9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHW7 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NY91 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P174 TBC1D9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZT07 TBC1D9 "TBC1 domain family member 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MS95 TBC1D9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308221 Tbc1d9 "TBC1 domain family, member 9 (with GRAM domain)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
COG5210 496 COG5210, COG5210, GTPase-activating protein [Gener 5e-38
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 1e-35
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-35
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information 
 Score =  139 bits (351), Expect = 5e-38
 Identities = 69/189 (36%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 80  YLQPQIASISEGIALKSSLKL----SSLANAIT---LKKLIRKGIPPVLRPKVWFSLSGA 132
             +PQ     E  A K  +            +    L++LIRKGIP  LR  VW  L G 
Sbjct: 169 KEEPQKLRYYELAADKLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGI 228

Query: 133 AKKKSTVPESYYNDLTKAVEGKVTPAT--KQIDHDLPRTFPGHPWLDTPDGH--ATLRRV 188
                  P  Y   L    E K+       QI+ DL RTFP +    T        LRRV
Sbjct: 229 GFDLDKNPGLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRV 288

Query: 189 LVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHV 248
           L  YS  + +VGY QG+N++AA LLLV+++EE AFW L  LL+N  +   +  NLSG H 
Sbjct: 289 LKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHR 348

Query: 249 EQRVFKDLL 257
           + +V  DL+
Sbjct: 349 DLKVLDDLV 357

Length = 496
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
KOG2058 436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG2223 586 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.98
COG5210 496 GTPase-activating protein [General function predic 99.97
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.97
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.94
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.9
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 99.9
KOG4567370 consensus GTPase-activating protein [General funct 99.89
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.89
KOG2224 781 consensus Uncharacterized conserved protein, conta 99.81
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.77
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 99.74
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.62
KOG2595 395 consensus Predicted GTPase activator protein [Sign 99.41
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.31
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.36
KOG1648813 consensus Uncharacterized conserved protein, conta 96.91
KOG3636 669 consensus Uncharacterized conserved protein, conta 95.96
KOG2224 781 consensus Uncharacterized conserved protein, conta 85.24
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-44  Score=328.65  Aligned_cols=218  Identities=40%  Similarity=0.623  Sum_probs=175.2

Q ss_pred             cccccccCCcccCCcch----HhHHHHHHHHHHHHhHHHHHHHHhhcCCccccccchhhhhhhhhhhcccccCCCCHHHH
Q 023831           34 VKFQDLYGFTVEGNVDD----VNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITL  109 (276)
Q Consensus        34 ~~~~D~yGF~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (276)
                      ...+|.|||........    ...+....+...++..+|..+...+ -+|..                 +-.....+.+|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-----------------~~~~~~~s~el  149 (436)
T KOG2058|consen   88 NNGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-----------------PNDFPPRSDEL  149 (436)
T ss_pred             cCcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-----------------cccccCCcHHH
Confidence            34679999875433222    1222222333344555777776555 55532                 11123468999


Q ss_pred             HHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcCCCCchhhhhhhcCCCCCCCC-CCCCCch--hHHHHH
Q 023831          110 KKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATLR  186 (276)
Q Consensus       110 k~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dv~RT~p~~-~~F~~~~--~~~~L~  186 (276)
                      |+++|+|||+++|+.||..++|...... . .++|++++.....+.++..++|+.|+.||||++ +.|..++  +++.|+
T Consensus       150 k~liRkGiP~~~R~~VW~~~~g~~~~~~-~-~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~Lr  227 (436)
T KOG2058|consen  150 KRLIRKGIPPELRGEVWWVLSGARRQLN-Y-PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLR  227 (436)
T ss_pred             HHHHHcCCChhhhhHHHHHHhcchhhcc-C-chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHH
Confidence            9999999999999999999999433322 2 368999988766666689999999999999999 7888754  489999


Q ss_pred             HHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCcCCCchhHHHHHHHHHHHHHHhCHHHHH
Q 023831          187 RVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRYAL  266 (276)
Q Consensus       187 rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~  266 (276)
                      |||.||+.+||+||||||||++||+||++|++||+|||||+.|++++++. ||++++.|.++++.||+.||++.+|+|+.
T Consensus       228 RvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~  306 (436)
T KOG2058|consen  228 RVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLSL  306 (436)
T ss_pred             HHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHHH
Confidence            99999999999999999999999999999977999999999999999854 99999999999999999999999999999


Q ss_pred             HHHHhh
Q 023831          267 VYEEFL  272 (276)
Q Consensus       267 hl~~~~  272 (276)
                      ||+.+.
T Consensus       307 ~l~~~~  312 (436)
T KOG2058|consen  307 HLEGNG  312 (436)
T ss_pred             hhhhcC
Confidence            998874

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
3hzj_A 310 Crystal Structure Of The Rabgap Domain Of The Rabga 2e-16
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 3e-14
3qye_A 331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 2e-13
3dzx_A 346 Crystal Structure Of The Rabgap Domain Of Human Tbc 4e-06
2qq8_A 334 Crystal Structure Of The Putative Rabgap Domain Of 9e-06
1fkm_A 396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 9e-06
2g77_A 410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 1e-05
2qfz_A 345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-04
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
           L  L++ G+P  LR +VW  L+G    ++ +      D  + +  K +     I  D+ R
Sbjct: 26  LSTLVKSGVPEALRAEVWQLLAGCHDNQAXL------DRYRILITKDSAQESVITRDIHR 79
Query: 169 TFPGHPWL-DTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWML 226
           TFP H +  DT  DG  +L ++   YS  D D+GYCQG +++AA+LLL    EE AF +L
Sbjct: 80  TFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLL-HXPEEQAFCVL 138
Query: 227 AVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCP 262
             +  +  + D Y NN    H +    + L  +Q P
Sbjct: 139 VKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLP 174
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
3qye_A 331 TBC1 domain family member 1; rabgap, RAB, myocytes 8e-60
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-58
2qq8_A 334 TBC1 domain family member 14; structural genomics 3e-53
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 6e-37
2qfz_A 345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-34
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
 Score =  191 bits (488), Expect = 8e-60
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 94  LKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP------ESYYNDL 147
           L +  +     +   +   + +G+P   R ++W  L+     K   P      +  Y +L
Sbjct: 37  LSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKEL 96

Query: 148 TKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGL 205
            K    ++T     I  DL RTFP HP+     G    +L  +L  YS  D +VGYCQGL
Sbjct: 97  LK----QLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGL 152

Query: 206 NYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPR 263
           ++VA +LLL M +EE+AF ML  L+ ++ +   Y  ++    ++      LL      
Sbjct: 153 SFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRD 209
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
2qq8_A 334 TBC1 domain family member 14; structural genomics 100.0
3qye_A 331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A 310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
2qfz_A 345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A 396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.85
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-39  Score=296.04  Aligned_cols=168  Identities=22%  Similarity=0.358  Sum_probs=144.4

Q ss_pred             ccCCCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCchHHHHHHHHHhcC----------------------CCCc
Q 023831          100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG----------------------KVTP  157 (276)
Q Consensus       100 ~~~~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~----------------------~~~~  157 (276)
                      |+...++++||+++++|||+++|+.||+.++|+..   ....+.|+.+++....                      ...+
T Consensus        32 w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~---~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (334)
T 2qq8_A           32 WETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNEL---NITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREA  108 (334)
T ss_dssp             CC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTT---CCCHHHHHHHHHHHHHHC----------------------CC
T ss_pred             HHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCcc---ccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchh
Confidence            33345789999999999999999999999999852   1224567776543210                      0135


Q ss_pred             hhhhhhhcCCCCCCCCCCCCCc-hhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 023831          158 ATKQIDHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVN  236 (276)
Q Consensus       158 ~~~qI~~Dv~RT~p~~~~F~~~-~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~~Ee~aF~~l~~l~~~~~~~  236 (276)
                      ..+||++||.||||++++|... .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||++||+++.+.
T Consensus       109 ~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~  187 (334)
T 2qq8_A          109 SLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQM  187 (334)
T ss_dssp             HHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHH
Confidence            6789999999999999999875 4799999999999999999999999999999999999 7999999999999987667


Q ss_pred             cCcCCCchhHHHHHHHHHHHHHHhCHHHHHHHHHh
Q 023831          237 DCYTNNLSGCHVEQRVFKDLLVKQCPRYALVYEEF  271 (276)
Q Consensus       237 ~~f~~~~~~l~~~~~~~~~Ll~~~~P~L~~hl~~~  271 (276)
                      ++|..++++++..+.+|+.||+.++|+||+||+++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~  222 (334)
T 2qq8_A          188 AFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKN  222 (334)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHc
Confidence            89999999999999999999999999999999987
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-31
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 2e-31
 Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 39/181 (21%)

Query: 95  KSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK 154
            + LK  ++ N   L+++   GIP + RP VW  L G     +   E +     K     
Sbjct: 11  DNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDS 70

Query: 155 V-----------TPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQ 203
           +            P   QI+ D+PRT P  P         +L+R+L  ++ R    GY Q
Sbjct: 71  LKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQ 130

Query: 204 GLNYVAALLLLVMKT----------------------------EEDAFWMLAVLLENVLV 235
           G+N +         T                            E D FW L  LLE +  
Sbjct: 131 GINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD 190

Query: 236 N 236
           N
Sbjct: 191 N 191

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-34  Score=237.96  Aligned_cols=135  Identities=31%  Similarity=0.515  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHhCCCCchHHHHHHHHHcchhhhccCc-------hHHHHHHHHHhcCC----CCchhhhhhhcCCCCCC
Q 023831          103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVEGK----VTPATKQIDHDLPRTFP  171 (276)
Q Consensus       103 ~~~~~~lk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~~~----~~~~~~qI~~Dv~RT~p  171 (276)
                      +.+.++||+++++|||+++|+.||+.++|+.....+..       ...|..+.......    ..+..++|++||.||+|
T Consensus        19 ~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~   98 (194)
T d1fkma1          19 IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNP   98 (194)
T ss_dssp             BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSST
T ss_pred             CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCC
Confidence            46889999999999999999999999999853322111       12344444332221    12456899999999999


Q ss_pred             CCCCCCCchhHHHHHHHHhhhhhcCCCCCcccchhHHHHHHHHhcC----------------------------CHHHHH
Q 023831          172 GHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK----------------------------TEEDAF  223 (276)
Q Consensus       172 ~~~~F~~~~~~~~L~rVL~ays~~~p~iGY~QGm~~Iaa~LLl~~~----------------------------~Ee~aF  223 (276)
                      ++++|..+.+++.|+|||.|||.+||++|||||||+|||+||+++.                            .|++||
T Consensus        99 ~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F  178 (194)
T d1fkma1          99 HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  178 (194)
T ss_dssp             TSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999998752                            288999


Q ss_pred             HHHHHHHhhcCCccCc
Q 023831          224 WMLAVLLENVLVNDCY  239 (276)
Q Consensus       224 ~~l~~l~~~~~~~~~f  239 (276)
                      |||++||+.+  +++|
T Consensus       179 ~~f~~lm~~i--~d~y  192 (194)
T d1fkma1         179 WCLTKLLEQI--TDNY  192 (194)
T ss_dssp             HHHHHHHGGG--GGGS
T ss_pred             HHHHHHHHhh--hccC
Confidence            9999999985  4665