Citrus Sinensis ID: 023834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MALAFASSFHLATGRVKPLTSSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccccHHHHHHHHHcccccEEEEEEEEEEccccccccEEEEEEEEEccccccccccEEEEEEEEEEEccccEEEEEEEEEEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHccccccccccccccEEccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHccccEEEEEEcHHHHHHHHHHccccccEEEcEEEEEEEEEEcccccEEEEEEEEccccHHHHccccEEEEEEEEEEEcccEEEEEEEEEEEccccccHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccEEEEcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MALAFASSFhlatgrvkpltssnatRKLYSQMKvsgsatvavdrtqvsefelenKKHDLLSTIqgtqrgqntnaDQRSIIEEALVglegcnmgepidlvkldgtwrlqytsapdVLVLFEAAarlpffkvgqifqkfecrdksdggvicnvvrwsvppllekeegatlvVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQaliapailprsFLSLQILQFIRAFKaqipvtnttpgrrsvgglYYLSyldnnmllgravggggvfvftkaqplel
Flexible Loop (DISEMBL)
MALAFassfhlatgrvkpltssnatRKLYSqmkvsgsatvaVDRTQVSEFelenkkhdllstiqgtqrgqntnadqRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFEcrdksdggviCNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFkaqipvtnttpgrrsvGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Low Complexity Region (SEG)
MALAFASSFHLATGRVKPLTSSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAvggggvfvfTKAQPLEL
Disordered region (IsUnstruct)
******************************************************************************IIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK******
Disordered Region (DISOPRED)
********************************************************HDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQI***N*****RSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQP***
Disordered Region (DISEMBL)
MALAFASSFHLATGRVKPLTSSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Disordered Region (DISPRO)
*********************************************QVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALAFASSFHLATGRVKPLTSSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q8W4F1	284	Probable plastid-lipid-as	yes	no	0.934	0.908	0.712	1e-106
Q94KU6	319	Plastid lipid-associated	N/A	no	0.789	0.683	0.284	8e-08
O81439	318	Probable plastid-lipid-as	no	no	0.804	0.698	0.269	1e-07
O49629	310	Probable plastid-lipid-as	no	no	0.789	0.703	0.276	2e-07
Q94KU5	360	Plastid lipid-associated	N/A	no	0.768	0.588	0.291	6e-07
Q9ZWQ8	323	Plastid-lipid-associated	N/A	no	0.786	0.671	0.248	7e-07
Q9ZP40	358	Plastoglobulin-1, chlorop	N/A	no	0.735	0.567	0.276	1e-06
Q94FZ9	327	Plastid lipid-associated	N/A	no	0.728	0.614	0.269	2e-06
O82291	376	Probable plastid-lipid-as	no	no	0.731	0.537	0.267	5e-06
Q96398	322	Chromoplast-specific caro	N/A	no	0.75	0.642	0.266	1e-05

>sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/268 (71%), Positives = 224/268 (83%), Gaps = 10/268 (3%)

Query: 15  RVKPL---TSSNATRKLYSQMKVSG---SATVAVDRTQVSEFELENKKHDLLSTIQGTQR 68
           R+ P      +N  ++   ++ V+    SA V VD    +E +LE+KKHDLL  +Q TQR
Sbjct: 21  RISPFGLNIKTNHRKRFSCRVAVASGETSARVVVD----NELDLEHKKHDLLRAVQDTQR 76

Query: 69  GQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFF 128
           G    +DQRSIIEEALV +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF
Sbjct: 77  GLTATSDQRSIIEEALVTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFF 136

Query: 129 KVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 188
           +VGQ+FQKFECRD+SDGG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE
Sbjct: 137 QVGQVFQKFECRDRSDGGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEE 196

Query: 189 VTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLS 248
           ++V+NI I+E+LQALIAPAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLS
Sbjct: 197 ISVRNININEQLQALIAPAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLS 256

Query: 249 YLDNNMLLGRAVGGGGVFVFTKAQPLEL 276
           YLDNNMLLGR+VGGGGVFVFTK+QPLEL
Sbjct: 257 YLDNNMLLGRSVGGGGVFVFTKSQPLEL 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KU6|PAP2_BRACM Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 35/253 (13%)

Query: 36  GSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGE 94
           GSA +  +    S  E E  K  L+ ++ GT RG + +++ R+ I + +  LE  N    
Sbjct: 76  GSALLMAEEAIESVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPA 135

Query: 95  PID-LVKLDGTWRLQYTSAPDVLVLFEAAAR--LPFFKVGQIFQKFECRDKSDGGVICNV 151
           P D L  L+G W L YTS    + LF   +R  +P  KV +I Q  +    SD   + N 
Sbjct: 136 PTDALFLLNGKWILAYTS---FVGLFPLLSRGIVPLVKVDEISQTID----SDNFTVENS 188

Query: 152 VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-- 203
           V ++ P         ++  +AKF++ S + + ++FEE  +       +I I E ++ L  
Sbjct: 189 VLFAGP-----LATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQ 243

Query: 204 ---IAPAILPRSFL-SLQ--ILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLG 257
              + P    R  L S+Q       R   +Q P+  + PG  S       +YLD ++ + 
Sbjct: 244 KIDLTPI---RGLLTSVQDTATSVARTISSQPPLKFSLPGD-SAQSWLLTTYLDKDIRIS 299

Query: 258 RAVGGGGVFVFTK 270
           R   GG VFV  K
Sbjct: 300 RG-DGGSVFVLIK 311

May stabilize the accumulated carotenoid structures.

Brassica campestris (taxid: 3711)

>sp|O81439|PAP1_ARATH Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 30/252 (11%)

Query: 35  SGSATVAV-DRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMG 93
           + S+TV+V D+   S  E E  K  L  ++ GT RG + ++D R+ I E +  LE  N  
Sbjct: 73  ASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPT 132

Query: 94  EPID--LVKLDGTWRLQYTSAPDVLVLFEAAARL--PFFKVGQIFQKFECRDKSDGGVIC 149
              +  L  L+G W L YTS    + LF   +R   P  KV +I Q  +    SD   + 
Sbjct: 133 PAPNEALFLLNGKWILAYTS---FVGLFPLLSRRIEPLVKVDEISQTID----SDSFTVQ 185

Query: 150 NVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL 203
           N VR++ P         +   +AKF++ S + + ++FE+  +       +I I E ++ L
Sbjct: 186 NSVRFAGP-----FSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVL 240

Query: 204 -----IAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGR 258
                + P     + +        R    Q P+  + P   +   L   +YLD ++ + R
Sbjct: 241 GQKIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLT-TYLDKDLRISR 299

Query: 259 AVGGGGVFVFTK 270
              GG V+V  K
Sbjct: 300 G-DGGSVYVLIK 310

Arabidopsis thaliana (taxid: 3702)

>sp|O49629|PAP2_ARATH Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 35/253 (13%)

Query: 36  GSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGE 94
           GSA +A +       E E  K  L+ ++ GT RG + +++ R+ I + +  LE  N    
Sbjct: 67  GSALLAAEEAIEDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPA 126

Query: 95  PID-LVKLDGTWRLQYTSAPDVLVLFEAAAR--LPFFKVGQIFQKFECRDKSDGGVICNV 151
           P + L  L+G W L YTS    + LF   +R  +P  KV +I Q  +    SD   + N 
Sbjct: 127 PTEALFLLNGKWILAYTS---FVNLFPLLSRGIVPLIKVDEISQTID----SDNFTVQNS 179

Query: 152 VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-- 203
           VR++ P         ++  +AKF++ S + + ++FE+  +       +I I E ++ L  
Sbjct: 180 VRFAGP-----LGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQ 234

Query: 204 ---IAPAILPRSFL-SLQ--ILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLG 257
              + P    R  L S+Q       R   +Q P+  + P   +   L   +YLD ++ + 
Sbjct: 235 KIDLNPI---RGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLT-TYLDKDIRIS 290

Query: 258 RAVGGGGVFVFTK 270
           R   GG VFV  K
Sbjct: 291 RG-DGGSVFVLIK 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KU5|PAP3_BRACM Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 35/247 (14%)

Query: 38  ATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGE-PI 96
           A   VD+T    +EL   K  L  T+ GT+ G    ++ R+ + E +  LE  N  + P+
Sbjct: 127 ADDGVDKT----WEL---KRCLADTVYGTELGFRAGSEVRAEVLEIVNQLEALNPTQAPV 179

Query: 97  DLVKL-DGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWS 155
           +  +L DG W L YT+  ++L L  AA   P  KV  I Q  + +  S    I N    S
Sbjct: 180 ENPELLDGNWVLLYTAFSELLPLL-AAGSTPLLKVKSISQSIDTKSLS----IDNSTTLS 234

Query: 156 VPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR---- 211
            P         +   +A F+V +   I + F+E T++   I   +    +  +  +    
Sbjct: 235 SP-----FADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINL 289

Query: 212 SFL--SLQILQFI-----RAFKAQIPVTNTTPGRRSVGGLYYL-SYLDNNMLLGRAVGGG 263
           SFL  SL  LQ +     RA   Q P+    PG R  G  + L +YLD ++ + R  G G
Sbjct: 290 SFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNR--GSSWLLTTYLDKDLRISR--GDG 345

Query: 264 GVFVFTK 270
           G+FV  +
Sbjct: 346 GLFVLAR 352

Brassica campestris (taxid: 3711)

>sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 37/254 (14%)

Query: 36  GSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGE 94
           G+  VA + +     E++N K  L+ +  GT RG N  ++ R+ I E +  LE  N    
Sbjct: 80  GALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPA 139

Query: 95  PID-LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVR 153
           P + L  L+  W L YTS   +  L  +   LP  +V +I Q  +    S+   + N ++
Sbjct: 140 PTEALTLLNAKWILVYTSFSGLFPLL-SRGTLPLARVEEISQTID----SENFTVQNSIQ 194

Query: 154 WSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS- 212
           ++ P         ++  +AKF+V S + + ++FEE  +    +++ L       +LP + 
Sbjct: 195 FAGP-----LATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSL-------VLPENV 242

Query: 213 -FLSLQ--------ILQFIRAFKAQIP--VTNTTPGRRSVGG-----LYYLSYLDNNMLL 256
            FL  +        IL  ++   + +   +++  P + S+           +YLD ++ +
Sbjct: 243 EFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRI 302

Query: 257 GRAVGGGGVFVFTK 270
            RA   G VFVF K
Sbjct: 303 SRA-DAGSVFVFIK 315

Citrus unshiu (taxid: 55188)

>sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 32/235 (13%)

Query: 52  LENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-----MGEPIDLVKLDGTWR 106
           LE  K  L+ T+ GT+ G    ++ R+ + E +  LE  N     + EP DL  L+G W 
Sbjct: 132 LEGLKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEP-DL--LNGNWV 188

Query: 107 LQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGA 166
           L YT++ ++L L  AA  LP  K+ +I Q  +    +D   + N        L       
Sbjct: 189 LLYTASSELLPLL-AAGSLPLLKLDKISQTID----TDSFTVVNSTT-----LSSPFASF 238

Query: 167 TLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL-----------QALIAPAILPRSFLS 215
           +  VSA F+V S   I + F+E ++Q   I  ++           Q  + P +     L 
Sbjct: 239 SFSVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQSLGPLE 298

Query: 216 LQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK 270
             +    R    Q P+    PG R+   L   +YLD ++ + R  G GG+FV  +
Sbjct: 299 NVVANISRVISGQSPLKIPIPGERTSSWLIT-TYLDKDLRISR--GDGGLFVLAR 350

May form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.

Pisum sativum (taxid: 3888)

>sp|Q94FZ9|PAP1_BRACM Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 29/230 (12%)

Query: 56  KHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPID--LVKLDGTWRLQYTSAP 113
           K  L  ++ GT RG + +++ R+ I E +  LE  N     +  L  L+G W L YTS  
Sbjct: 104 KRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYTS-- 161

Query: 114 DVLVLFEAAARL--PFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVS 171
             + LF   +R   P  KV +I Q  +    SD   + N VR++ P         +L  +
Sbjct: 162 -FVGLFPLLSRRISPLVKVDEISQTID----SDSFTVHNSVRFASP-----LATTSLSTN 211

Query: 172 AKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-----IAPAILPRSFLSLQILQ 220
           AKF+V S + + ++FE+  +       +I I E ++ L     + P     + +      
Sbjct: 212 AKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASS 271

Query: 221 FIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK 270
             R   +Q P+  + PG  S       +YLD ++ + R   GG VFV  +
Sbjct: 272 VARTISSQPPLKFSLPG-DSAQSWLLTTYLDKDLRISRG-DGGSVFVLIR 319

May modulate the action of carotenoids.

Brassica campestris (taxid: 3711)

>sp|O82291|PAP3_ARATH Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 26/228 (11%)

Query: 56  KHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGEPIDLVKL-DGTWRLQYTSAP 113
           K  L  ++ GT+ G    ++ R+ + E +  LE  N    P++  +L DG W L YT+  
Sbjct: 154 KRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFS 213

Query: 114 DVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAK 173
           +++ L  AA   P  KV  I Q  +  +     +I N    S P         +   +A 
Sbjct: 214 ELIPLL-AAGSTPLLKVKSISQSIDTNNL----IIDNSTTLSSP-----FADFSFSATAS 263

Query: 174 FDVVSVRNIYLQFEEVTVQNIYISEELQ---------ALIAPAILPRSFLSLQIL--QFI 222
           F+V S   I + F+E T++   I   +            I+ ++L +S   LQ +     
Sbjct: 264 FEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANIS 323

Query: 223 RAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK 270
           RA   Q P+    PG R    L   +YLD ++ + R  G GG+FV  +
Sbjct: 324 RALSGQPPLKLPFPGNRGSSWLLT-TYLDKDLRISR--GDGGLFVLAR 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q96398|CHRC_CUCSA Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 99/233 (42%), Gaps = 26/233 (11%)

Query: 51  ELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGEPID-LVKLDGTWRLQ 108
           E+   K  L+ +  GT RG   + D R+ I E +  LE  N    P + L  L+G W L 
Sbjct: 95  EIYKLKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILA 154

Query: 109 YTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATL 168
           YT+   +  L   +  LP  KV +I Q  +    S+   + N V++S P         ++
Sbjct: 155 YTTFAGLFPLL--SRNLPLVKVEEISQTID----SENLTVQNSVQFSGP-----LATTSI 203

Query: 169 VVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQAL-----IAPAILPRSFLSLQ 217
             +AKF+V S   ++++FEE  +       +I I + +  L       P     S L   
Sbjct: 204 TTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDT 263

Query: 218 ILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTK 270
                +   +Q P+  +    R V      +YLD ++ + R   GG VFV  K
Sbjct: 264 ASNVAKTISSQPPIKFSISNTR-VESWLLTTYLDEDLRISRG-DGGSVFVLLK 314

May be involved in carotenoid sequestration within chromoplasts.

Cucumis sativus (taxid: 3659)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
255548157	285	structural molecule, putative [Ricinus c	0.938	0.908	0.753	1e-111
297824781	283	plastid-lipid associated protein pap [Ar	0.942	0.918	0.720	1e-106
21553852	284	unknown [Arabidopsis thaliana]	0.934	0.908	0.712	1e-105
18407205	284	putative plastid-lipid-associated protei	0.934	0.908	0.712	1e-105
225453694	278	PREDICTED: probable plastid-lipid-associ	0.981	0.974	0.703	3e-98
356521622	276	PREDICTED: probable plastid-lipid-associ	0.804	0.804	0.786	9e-98
388510882	271	unknown [Lotus japonicus]	0.967	0.985	0.689	3e-97
449453338	278	PREDICTED: probable plastid-lipid-associ	0.989	0.982	0.645	4e-95
88175353	279	fibrillin 8 [Coffea canephora]	0.920	0.910	0.679	2e-94
242039135	285	hypothetical protein SORBIDRAFT_01g01745	0.920	0.891	0.622	2e-84

>gi|255548157|ref|XP_002515135.1| structural molecule, putative [Ricinus communis] gi|223545615|gb|EEF47119.1| structural molecule, putative [Ricinus communis]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/264 (75%), Positives = 228/264 (86%), Gaps = 5/264 (1%)

Query: 15  RVKPLTSSNATRKLYSQMKVSGSATVAVDR-TQVSEFELENKKHDLLSTIQGTQRGQNTN 73
           ++KP    NATR +  Q K S SATVA D+ T VSEFE+E KKHD+L+ IQ TQRG    
Sbjct: 25  KIKPF---NATRNVSFQNKFSCSATVATDKMTPVSEFEIEKKKHDVLTAIQDTQRGLVAT 81

Query: 74  ADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQI 133
           ADQRSIIE+ALV LEG N+G PIDLVKLDGTWRLQYTSAPDVL+L E++ARLPF +VGQI
Sbjct: 82  ADQRSIIEDALVSLEGYNVGAPIDLVKLDGTWRLQYTSAPDVLILLESSARLPFLQVGQI 141

Query: 134 FQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQN 193
           FQKFECRD+S GG+I NVVRWS+P + E+++GATL+VSAKFDVVS RNIYLQFEE+++QN
Sbjct: 142 FQKFECRDQSSGGIIRNVVRWSIPTVFEEQDGATLLVSAKFDVVSARNIYLQFEEISIQN 201

Query: 194 IYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNT-TPGRRSVGGLYYLSYLDN 252
           I ISEE+QALIAPAILPRSF SLQILQFIRAFKAQIPV N   PGRR+VGGLYYLSYLDN
Sbjct: 202 IKISEEVQALIAPAILPRSFFSLQILQFIRAFKAQIPVRNPGNPGRRAVGGLYYLSYLDN 261

Query: 253 NMLLGRAVGGGGVFVFTKAQPLEL 276
           NM+LGRAVGGGG+FVFTKAQPL+L
Sbjct: 262 NMILGRAVGGGGIFVFTKAQPLDL 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824781|ref|XP_002880273.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata] gi|297326112|gb|EFH56532.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/265 (72%), Positives = 223/265 (84%), Gaps = 5/265 (1%)

Query: 15  RVKPL---TSSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQN 71
           RV P     ++N  ++    + V+   T A  R   +E +LE+KKHDLL  +Q TQRG  
Sbjct: 21  RVNPFGLNINTNHRKRFSCPIAVASGETTA--RVVDNELDLEHKKHDLLRAVQDTQRGLT 78

Query: 72  TNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVG 131
             +DQRSIIEEALV +EG N GE IDLVKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VG
Sbjct: 79  ATSDQRSIIEEALVTVEGFNGGEEIDLVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVG 138

Query: 132 QIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV 191
           Q+FQKFECRD+SDGG+I NVV+WS+P LLE++EGATLVV+AKFD V  RNIYLQFEE++V
Sbjct: 139 QVFQKFECRDRSDGGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVCSRNIYLQFEEISV 198

Query: 192 QNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLD 251
           +NI I+E+LQALIAPAILPRSFLSLQ+LQFIR FKAQIPVT T+PGRRSVGGLYYLSYLD
Sbjct: 199 RNININEQLQALIAPAILPRSFLSLQLLQFIRTFKAQIPVTATSPGRRSVGGLYYLSYLD 258

Query: 252 NNMLLGRAVGGGGVFVFTKAQPLEL 276
           NNMLLGR+VGGGGVFVFTK+QPLEL
Sbjct: 259 NNMLLGRSVGGGGVFVFTKSQPLEL 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553852|gb|AAM62945.1| unknown [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/268 (71%), Positives = 224/268 (83%), Gaps = 10/268 (3%)

Query: 15  RVKPL---TSSNATRKLYSQMKVSG---SATVAVDRTQVSEFELENKKHDLLSTIQGTQR 68
           R+ P      +N  ++   ++ V+    SA V VD    +E +LE+KKHDLL  +Q TQR
Sbjct: 21  RISPFGLNIKTNHRKRFSCRVAVASGETSARVVVD----NELDLEHKKHDLLRAVQDTQR 76

Query: 69  GQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFF 128
           G    +DQRSIIEEALV +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF
Sbjct: 77  GLTATSDQRSIIEEALVTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFF 136

Query: 129 KVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 188
           +VGQ+FQKFECRD+SDGG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE
Sbjct: 137 QVGQVFQKFECRDRSDGGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEE 196

Query: 189 VTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLS 248
           ++V+NI I+E+LQALIAPAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLS
Sbjct: 197 ISVRNININEQLQALIAPAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLS 256

Query: 249 YLDNNMLLGRAVGGGGVFVFTKAQPLEL 276
           YLDNNMLLGR+VGGGGVFVFTK+QPLEL
Sbjct: 257 YLDNNMLLGRSVGGGGVFVFTKSQPLEL 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407205|ref|NP_566091.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana] gi|75162466|sp|Q8W4F1.1|PAP10_ARATH RecName: Full=Probable plastid-lipid-associated protein 10, chloroplastic; AltName: Full=Fibrillin-10; Flags: Precursor gi|17065042|gb|AAL32675.1| Unknown protein [Arabidopsis thaliana] gi|20197139|gb|AAC34229.2| Expressed protein [Arabidopsis thaliana] gi|20259994|gb|AAM13344.1| unknown protein [Arabidopsis thaliana] gi|330255676|gb|AEC10770.1| putative plastid-lipid-associated protein 10 [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/268 (71%), Positives = 224/268 (83%), Gaps = 10/268 (3%)

Query: 15  RVKPL---TSSNATRKLYSQMKVSG---SATVAVDRTQVSEFELENKKHDLLSTIQGTQR 68
           R+ P      +N  ++   ++ V+    SA V VD    +E +LE+KKHDLL  +Q TQR
Sbjct: 21  RISPFGLNIKTNHRKRFSCRVAVASGETSARVVVD----NELDLEHKKHDLLRAVQDTQR 76

Query: 69  GQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFF 128
           G    +DQRSIIEEALV +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF
Sbjct: 77  GLTATSDQRSIIEEALVTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFF 136

Query: 129 KVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 188
           +VGQ+FQKFECRD+SDGG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE
Sbjct: 137 QVGQVFQKFECRDRSDGGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEE 196

Query: 189 VTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLS 248
           ++V+NI I+E+LQALIAPAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLS
Sbjct: 197 ISVRNININEQLQALIAPAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLS 256

Query: 249 YLDNNMLLGRAVGGGGVFVFTKAQPLEL 276
           YLDNNMLLGR+VGGGGVFVFTK+QPLEL
Sbjct: 257 YLDNNMLLGRSVGGGGVFVFTKSQPLEL 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453694|ref|XP_002270341.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic [Vitis vinifera] gi|296089046|emb|CBI38749.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/280 (70%), Positives = 219/280 (78%), Gaps = 9/280 (3%)

Query: 1   MALAFASSFHLATG-RVKPLTSS-----NATRKLYSQMKVSGSATVAVDRTQVSEFELEN 54
           M LAFAS+ HL TG RV   T S     NA+R L +Q      A  A   TQ +EF LE 
Sbjct: 1   MNLAFASTLHLPTGQRVGYDTRSVSLAPNASRGLSTQKMFPCLAATATPTTQAAEFVLEE 60

Query: 55  KKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPD 114
           KKHDLL  IQ TQRG    ADQRS IEEALV +E  N G PIDL KLDGTWRLQYTSAPD
Sbjct: 61  KKHDLLRAIQDTQRGLVATADQRSCIEEALVNVEEYNAGVPIDLGKLDGTWRLQYTSAPD 120

Query: 115 VLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKF 174
           VLVL E+AAR  FF+VGQIFQKFEC+++S  GV+ NVVRWS+PPLLE++EGATL+VSAKF
Sbjct: 121 VLVLLESAARFSFFQVGQIFQKFECQNQSKEGVVRNVVRWSIPPLLEEQEGATLLVSAKF 180

Query: 175 DVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNT 234
            VVS RNIYLQFEE+++Q+I ISEELQALIAPAILPRSFLSLQILQFIR FKA+IPV N 
Sbjct: 181 SVVSARNIYLQFEEISIQSINISEELQALIAPAILPRSFLSLQILQFIRTFKAEIPVRNQ 240

Query: 235 TPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPL 274
             GRRSVGGLYYLSYLD NMLLGRA   GG+FVFT+AQPL
Sbjct: 241 --GRRSVGGLYYLSYLDANMLLGRA-AAGGIFVFTRAQPL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521622|ref|XP_003529453.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Glycine max]

 Score =  362 bits (929), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 177/225 (78%), Positives = 202/225 (89%), Gaps = 3/225 (1%)

Query: 51  ELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMG-EPIDLVKLDGTWRLQY 109
           ELENKKH LL+++Q TQRG  T  DQRS IEEALV LEGCN+G  PI+L  LDGTWRLQY
Sbjct: 53  ELENKKHLLLTSVQDTQRGLLTTPDQRSCIEEALVSLEGCNIGSHPINLSNLDGTWRLQY 112

Query: 110 TSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLV 169
           TSA DVL+L +AAA LPFF+VGQIFQKFECRD+S+GGVI NVVRWS+P LLE++EGATL+
Sbjct: 113 TSASDVLILLQAAATLPFFQVGQIFQKFECRDQSNGGVIRNVVRWSIPNLLEEQEGATLL 172

Query: 170 VSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQI 229
           VSAKF+VVSVRNIYLQF+E+T+Q+I ISEELQALIAPAILPRSF+SLQILQF+R FKAQI
Sbjct: 173 VSAKFNVVSVRNIYLQFQEITIQDINISEELQALIAPAILPRSFISLQILQFLRTFKAQI 232

Query: 230 PVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPL 274
           PV +  PGR+SVGGLYYLSYLD+NMLLGRAVGGGGVFVFT+AQ L
Sbjct: 233 PVRD--PGRQSVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSL 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510882|gb|AFK43507.1| unknown [Lotus japonicus]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/277 (68%), Positives = 222/277 (80%), Gaps = 10/277 (3%)

Query: 1   MALAFASSFHLATGRVKPLTSSNATRKLYSQMKVSG---SATVAVDRTQVSEFELENKKH 57
           M LAF  S  L      P + S  TRK  S   V       ++++   Q  + ELENKK 
Sbjct: 1   MDLAFRCSSPLYL----PSSPSTTTRK-PSNCHVKSFPRKMSLSMATAQAYDSELENKKL 55

Query: 58  DLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLV 117
            LL++IQ TQRG  T  DQR  IEEALV +EGCN G+PI+L KLDGTWRLQYTSA DVLV
Sbjct: 56  QLLTSIQDTQRGLLTTPDQRFSIEEALVNVEGCNKGDPINLNKLDGTWRLQYTSAFDVLV 115

Query: 118 LFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVV 177
           LFEAAARLPFF+VGQIFQKFECRD+S+GGVI NVVRWSVP LLE+++GATL+VSAKF VV
Sbjct: 116 LFEAAARLPFFQVGQIFQKFECRDESNGGVIRNVVRWSVPNLLEEQDGATLLVSAKFTVV 175

Query: 178 SVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPG 237
           SVRNIY QF+E+T+Q+I I+E+LQALIAPA+LPRS+LSLQILQF+RAFKAQIPV +  PG
Sbjct: 176 SVRNIYPQFQEITLQDININEQLQALIAPALLPRSYLSLQILQFLRAFKAQIPVRD--PG 233

Query: 238 RRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPL 274
           R+SVGGLYYLSYLD+NMLLGRAVGGGGVFVFT+AQ L
Sbjct: 234 RQSVGGLYYLSYLDDNMLLGRAVGGGGVFVFTRAQSL 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453338|ref|XP_004144415.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus] gi|449500056|ref|XP_004160991.1| PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 180/279 (64%), Positives = 216/279 (77%), Gaps = 6/279 (2%)

Query: 1   MALAFASSFHLATGRVKPLTSSN----ATRKLYSQMKVSGSATVAVDRTQVSEFELENKK 56
           M L F S  +L+T + K     N      R+   +      ATVA   TQ   + LE KK
Sbjct: 1   MDLPFVSPLYLSTQK-KAFNGHNPFCRVRREDSCRRTFQCLATVASQTTQTYNYGLETKK 59

Query: 57  HDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVL 116
           +DLL  +Q TQRG   ++DQR +IEEALV +E  +MG PIDL+KLDGTWRLQYTSAPDVL
Sbjct: 60  NDLLVAVQETQRGLVASSDQRCVIEEALVNVEAYSMGLPIDLMKLDGTWRLQYTSAPDVL 119

Query: 117 VLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV 176
           +L EAA RLPFF++GQIFQKFEC+D S+ G++ NVVRWS+P LLE++EGATL+VSAKF V
Sbjct: 120 ILLEAADRLPFFQIGQIFQKFECQDSSNEGIVRNVVRWSIPSLLEEQEGATLLVSAKFSV 179

Query: 177 VSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTP 236
           VS+RNIYL+FEE++VQNI ISE+LQALIAPAILPRSFLSLQILQF+R+F+  +PV N+  
Sbjct: 180 VSLRNIYLEFEEISVQNIKISEQLQALIAPAILPRSFLSLQILQFLRSFQVGVPVRNSGS 239

Query: 237 GRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLE 275
             R VGGLYYLSYLD NMLLGRAVGGGGVFVFTKAQPL+
Sbjct: 240 S-RGVGGLYYLSYLDGNMLLGRAVGGGGVFVFTKAQPLQ 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88175353|gb|ABD39695.1| fibrillin 8 [Coffea canephora]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 209/256 (81%), Gaps = 2/256 (0%)

Query: 21  SSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSII 80
           + N++  ++    +  SATV +   + +E ELE+KK++LL  IQ TQRG  T ADQRS I
Sbjct: 26  TPNSSTNVHHPKVLRYSATVGLSPRRDAETELEDKKYELLRVIQDTQRGLVTTADQRSSI 85

Query: 81  EEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECR 140
           EEALV +E  + GE IDL +LDGTWRLQYTSAPDVL+LFE+A+RLPFF+VGQ+FQKFEC+
Sbjct: 86  EEALVSVEAFDAGEAIDLGELDGTWRLQYTSAPDVLILFESASRLPFFQVGQVFQKFECQ 145

Query: 141 DKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 200
           D+S+GGV+ N+V+WS+P LLE++EGATL+VSAKF VVS RNIY QFEE+    I ISEEL
Sbjct: 146 DESNGGVVRNIVKWSIPSLLEEQEGATLLVSAKFSVVSSRNIYFQFEEIAFNKINISEEL 205

Query: 201 QALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAV 260
           QALIAPAILPRSF+SLQILQFIRAFKA+ PV N  PGR SVGGLYYLSYLD  MLLGRAV
Sbjct: 206 QALIAPAILPRSFISLQILQFIRAFKAEFPVRN--PGRNSVGGLYYLSYLDRYMLLGRAV 263

Query: 261 GGGGVFVFTKAQPLEL 276
           GGGGVFVFT+AQ + L
Sbjct: 264 GGGGVFVFTRAQAIVL 279

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039135|ref|XP_002466962.1| hypothetical protein SORBIDRAFT_01g017450 [Sorghum bicolor] gi|241920816|gb|EER93960.1| hypothetical protein SORBIDRAFT_01g017450 [Sorghum bicolor]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/262 (62%), Positives = 197/262 (75%), Gaps = 8/262 (3%)

Query: 15  RVKPLTSSNATRKLYSQMKVSGSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNA 74
           R +PL      R+L +    + +   +   T     + E +KH+LL  +Q T+RG     
Sbjct: 29  RSRPLREPRLCRRLVAAAAAATAPLASSPTTA----DTERRKHELLRAVQETRRGFAAGP 84

Query: 75  DQRSIIEEALVGLE--GCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQ 132
           DQR+ IEEA+V +E  G   G P+DL  LDGTWRL YTSA DVLVLFEAA RLP  +VGQ
Sbjct: 85  DQRAAIEEAVVAVEERGAGKGTPLDLAALDGTWRLCYTSASDVLVLFEAAERLPPLQVGQ 144

Query: 133 IFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQ 192
           I+QKFEC+D+SDGG + NVVRWS+  LLE++EGATL+VSAKF V+S RNI+LQFEEV V+
Sbjct: 145 IYQKFECKDRSDGGTVRNVVRWSIENLLEEQEGATLMVSAKFVVLSKRNIFLQFEEVAVE 204

Query: 193 NIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDN 252
           NI ISE+LQALIAPAILPRSFLSLQILQF++ F+AQ+PV    P RRS GGLYYLSYLD 
Sbjct: 205 NIKISEQLQALIAPAILPRSFLSLQILQFLKTFRAQVPVGG--PERRSPGGLYYLSYLDR 262

Query: 253 NMLLGRAVGGGGVFVFTKAQPL 274
           +MLLGR+VGGGGVFVFTKAQPL
Sbjct: 263 DMLLGRSVGGGGVFVFTKAQPL 284

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2041454	284	AT2G46910 [Arabidopsis thalian	0.934	0.908	0.697	2.8e-89
TAIR|locus:2132006	310	AT4G22240 [Arabidopsis thalian	0.826	0.735	0.265	2.5e-08
TAIR|locus:2136627	318	FIB "fibrillin" [Arabidopsis t	0.568	0.493	0.282	1.1e-07
TAIR|locus:2090890	284	FIB4 "fibrillin 4" [Arabidopsi	0.539	0.524	0.329	1.6e-06
UNIPROTKB|O99019	326	O99019 "Light-induced protein,	0.528	0.447	0.298	8.5e-06
UNIPROTKB|P80471	326	P80471 "Light-induced protein,	0.528	0.447	0.298	8.5e-06
TAIR|locus:2062497	376	AT2G35490 [Arabidopsis thalian	0.695	0.510	0.268	7.2e-05
TAIR|locus:2026052	409	AT1G51110 [Arabidopsis thalian	0.532	0.359	0.303	0.00018

TAIR|locus:2041454 AT2G46910 [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 187/268 (69%), Positives = 218/268 (81%)

Query:    15 RVKPLTSSNAT--RKLYS-QMKV-SG--SATVAVDRTQVSEFELENKKHDLLSTIQGTQR 68
             R+ P   +  T  RK +S ++ V SG  SA V VD    +E +LE+KKHDLL  +Q TQR
Sbjct:    21 RISPFGLNIKTNHRKRFSCRVAVASGETSARVVVD----NELDLEHKKHDLLRAVQDTQR 76

Query:    69 GQNTNADQRSIIEEALVGLEGCNMGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFF 128
             G    +DQRSIIEEALV +EG N GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF
Sbjct:    77 GLTATSDQRSIIEEALVTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFF 136

Query:   129 KVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 188
             +VGQ+FQKFECRD+SDGG+I NVV+WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE
Sbjct:   137 QVGQVFQKFECRDRSDGGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEE 196

Query:   189 VTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLS 248
             ++V+NI I+E+LQALIAPAILPRSFLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLS
Sbjct:   197 ISVRNININEQLQALIAPAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLS 256

Query:   249 YLDNNMLLGRAXXXXXXXXXTKAQPLEL 276
             YLDNNMLLGR+         TK+QPLEL
Sbjct:   257 YLDNNMLLGRSVGGGGVFVFTKSQPLEL 284

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2132006 AT4G22240 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 67/252 (26%), Positives = 112/252 (44%)

Query:    36 GSATVAVDRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGE 94
             GSA +A +       E E  K  L+ ++ GT RG + +++ R+ I + +  LE  N    
Sbjct:    67 GSALLAAEEAIEDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPA 126

Query:    95 PID-LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVR 153
             P + L  L+G W L YTS  ++  L      +P  KV +I Q  +    SD   + N VR
Sbjct:   127 PTEALFLLNGKWILAYTSFVNLFPLLSRGI-VPLIKVDEISQTID----SDNFTVQNSVR 181

Query:   154 WSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTV------QNIYISEELQALIAPA 207
             ++ P  L     +T   +AKF++ S + + ++FE+  +       +I I E ++ L    
Sbjct:   182 FAGP--LGTNSIST---NAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKI 236

Query:   208 IL-P-RSFL-SLQ--ILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAXXX 262
              L P R  L S+Q       R   +Q P+  + P   +   L   +YLD ++ + R    
Sbjct:   237 DLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLL-TTYLDKDIRISRGDGG 295

Query:   263 XXXXXXTKAQPL 274
                    +  PL
Sbjct:   296 SVFVLIKEGSPL 307

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2136627 FIB "fibrillin" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 48/170 (28%), Positives = 82/170 (48%)

Query:    35 SGSATVAV-DRTQVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-M 92
             + S+TV+V D+   S  E E  K  L  ++ GT RG + ++D R+ I E +  LE  N  
Sbjct:    73 ASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPT 132

Query:    93 GEPID-LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNV 151
               P + L  L+G W L YTS   +  L       P  KV +I Q  +    SD   + N 
Sbjct:   133 PAPNEALFLLNGKWILAYTSFVGLFPLLSRRIE-PLVKVDEISQTID----SDSFTVQNS 187

Query:   152 VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQ 201
             VR++ P         +   +AKF++ S + + ++FE+  +    +++ ++
Sbjct:   188 VRFAGP-----FSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIE 232

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010205 "photoinhibition" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2090890 FIB4 "fibrillin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 56/170 (32%), Positives = 75/170 (44%)

Query:    56 KHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPIDLV----KLDGTWRLQYTS 111
             K  LLS + G  RG   + D     E A   LE    G P+DL     KL G WRL Y+S
Sbjct:    88 KLKLLSVVSGLNRGLVASVDDLERAEVAAKELE--TAGGPVDLTDDLDKLQGKWRLLYSS 145

Query:   112 APDVLVLFEAAARLPFFKV-----GQIFQKFECRDKSDGGVICNV---VRWSVPPLLEKE 163
             A     L  +   LP  ++     GQ+FQ+ +   K D   I  V     W  PPL   E
Sbjct:   146 AFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK-DFDNIAEVELGAPWPFPPL---E 201

Query:   164 EGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSF 213
               ATL  + KF+++    I + FE+ TV+      ++     P  LP SF
Sbjct:   202 ATATL--AHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFDIPR-LPDSF 248

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|O99019 O99019 "Light-induced protein, chloroplastic" [Solanum demissum (taxid:50514)]

 Score = 128 (50.1 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 48/161 (29%), Positives = 80/161 (49%)

Query:    31 QMKVSGSATVAVDRT-QVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEG 89
             Q++  G A V  +   + SE EL  K+  L  ++ GT RG + +++ R+ I E +  LE 
Sbjct:    79 QIRPGGVAVVEEEPPKEPSEIELLKKQ--LADSLYGTNRGLSASSETRAEIVELITQLES 136

Query:    90 CNMGE-PID-LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGV 147
              N    P + L  L+G W L YTS   +  L  +   LP  +V +I Q  +    S+   
Sbjct:   137 KNPNPAPTEALTLLNGKWILAYTSFSGLFPLL-SRGNLPLVRVEEISQTID----SESFT 191

Query:   148 ICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 188
             + N V ++  PL       ++  +AKF+V S + + ++FEE
Sbjct:   192 VQNSVVFA-GPLAT----TSISTNAKFEVRSPKRVQIKFEE 227

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

UNIPROTKB|P80471 P80471 "Light-induced protein, chloroplastic" [Solanum tuberosum (taxid:4113)]

 Score = 128 (50.1 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 48/161 (29%), Positives = 80/161 (49%)

Query:    31 QMKVSGSATVAVDRT-QVSEFELENKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEG 89
             Q++  G A V  +   + SE EL  K+  L  ++ GT RG + +++ R+ I E +  LE 
Sbjct:    79 QIRPGGVAVVEEEPPKEPSEIELLKKQ--LADSLYGTNRGLSASSETRAEIVELITQLES 136

Query:    90 CNMGE-PID-LVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGV 147
              N    P + L  L+G W L YTS   +  L  +   LP  +V +I Q  +    S+   
Sbjct:   137 KNPNPAPTEALTLLNGKWILAYTSFSGLFPLL-SRGNLPLVRVEEISQTID----SESFT 191

Query:   148 ICNVVRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEE 188
             + N V ++  PL       ++  +AKF+V S + + ++FEE
Sbjct:   192 VQNSVVFA-GPLAT----TSISTNAKFEVRSPKRVQIKFEE 227

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2062497 AT2G35490 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 58/216 (26%), Positives = 96/216 (44%)

Query:    56 KHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGEPIDLVKL-DGTWRLQYTSAP 113
             K  L  ++ GT+ G    ++ R+ + E +  LE  N    P++  +L DG W L YT+  
Sbjct:   154 KRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFS 213

Query:   114 DVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAK 173
             +++ L  AA   P  KV  I Q  +  +     +I N    S  P  +    AT    A 
Sbjct:   214 ELIPLL-AAGSTPLLKVKSISQSIDTNNL----IIDNSTTLS-SPFADFSFSAT----AS 263

Query:   174 FDVVSVRNIYLQFEEVTVQ------NIYISEELQAL---IAPAILPRSFLSLQIL--QFI 222
             F+V S   I + F+E T++      ++ + E +      I+ ++L +S   LQ +     
Sbjct:   264 FEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANIS 323

Query:   223 RAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGR 258
             RA   Q P+    PG R    L   +YLD ++ + R
Sbjct:   324 RALSGQPPLKLPFPGNRGSSWLL-TTYLDKDLRISR 358

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2026052 AT1G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
 Identities = 48/158 (30%), Positives = 76/158 (48%)

Query:     1 MALAFASS-FHLATGRVKPLTSSNATRKLYSQMKVSGSATVAVDRTQVSEF-ELENKKHD 58
             ++L+  S  F+L     + L  S   R L  ++  S S+TV  D+TQ S F + E K  D
Sbjct:    24 ISLSLCSPRFNLLNTTSRRLGLSRNCRTL--RISCSSSSTVT-DQTQQSSFNDAELKLID 80

Query:    59 LLSTIQGTQRGQNTNADQRSIIEEALVGLEGCN-MGEPIDLVKLDGTWRLQYTSAPDVLV 117
              L  IQG  RG++ +  Q + +E A+  LEG   +  P D   ++G WRL +T+ P    
Sbjct:    81 ALIGIQG--RGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTTRPGTAS 138

Query:   118 LFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWS 155
               +         V  +FQ    +  +D  V  N+V++S
Sbjct:   139 PIQRT--FTGVDVFTVFQDVYLKATNDPRV-SNIVKFS 173


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      276       267   0.00095  114 3  11 22  0.46    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.88u 0.13s 21.01t   Elapsed:  00:00:01
  Total cpu time:  20.88u 0.13s 21.01t   Elapsed:  00:00:01
  Start:  Fri May 10 23:26:04 2013   End:  Fri May 10 23:26:05 2013

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W4F1	PAP10_ARATH	No assigned EC number	0.7126	0.9347	0.9084	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	9e-24

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 94.9 bits (236), Expect = 9e-24
 Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 27/216 (12%)

Query: 56  KHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGEPI---DLVKLDGTWRLQYTSA 112
           K  LL  I GT RG   ++D R+ IE A+  LE  N   P     L  L+G WRL YT++
Sbjct: 4   KRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALN-PTPAPTESLDLLNGKWRLLYTTS 62

Query: 113 PDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSA 172
            ++L L  A  RLP  KVGQI+Q  +  + +    + N V +S P         +  V A
Sbjct: 63  KELLPLL-ARGRLPLLKVGQIYQTIDVNNLT----VYNSVTFSGPLAE-----GSFSVRA 112

Query: 173 KFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVT 232
           KF++ S + + ++FE   +                    + L       IR   +Q+P+ 
Sbjct: 113 KFEIRSPKRVQIRFERGVLG----------TPQLLKGSLTPLQ-DTASNIRGISSQLPLP 161

Query: 233 NTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVF 268
               G R+ G L   +YLD ++ + R   GG +FV 
Sbjct: 162 FPLSGDRAKGWL-ETTYLDEDLRISRG-DGGSLFVL 195

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=2e-40  Score=289.08  Aligned_cols=194  Identities=32%  Similarity=0.567  Sum_probs=150.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCCHhhHHHHHHHHHHHHhcCCCC-CCCc-cCCCceEEEEEecCCchHHHHHHhccCCceeec
Q 023834           54 NKKHDLLSTIQGTQRGQNTNADQRSIIEEALVGLEGCNMGE-PIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVG  131 (276)
Q Consensus        54 ~lK~~LL~ai~~t~rG~~as~~~r~~I~~lI~~LE~lnpt~-P~~~-~lL~G~W~L~yTS~~~~~~ll~a~~~lp~~~vg  131 (276)
                      ++|++||+++++++||+.+++++|++|+++|++||++||++ |+++ ++|+|+|+|+|||+.++.++++ .+++|.+.+|
T Consensus         2 ~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~-~~~~~~~~~~   80 (198)
T PF04755_consen    2 DLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQ-RGRLPGVRVG   80 (198)
T ss_pred             hHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccc-cccccccccc
Confidence            68999999999999999999999999999999999999999 9987 9999999999999999876654 2466778999


Q ss_pred             ceeEEEeeeeCCCCceEEEEEEeCC-CccccccCccEEEEEEEEEEccCceEEEEEEEEEEeeccchHHHHHhhCCccCc
Q 023834          132 QIFQKFECRDKSDGGVICNVVRWSV-PPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILP  210 (276)
Q Consensus       132 ~i~Q~Id~~~~~~~~~~~N~v~~~~-p~l~~~~~G~~~~v~a~~~v~s~~Ri~v~F~~~~v~~~~i~~~l~~ll~~~~lp  210 (276)
                      ++||+||..    ++++.|+|+|.. |.+    +| .+.+.+++++.++.|+.++|+++.++...+.   +.++++.  .
T Consensus        81 ~v~Q~id~~----~~~~~N~v~~~~~~~~----~~-~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l---~~~l~~~--~  146 (198)
T PF04755_consen   81 RVFQTIDAD----NGRVENVVELSGFPLL----EG-SVSVRASLEVRSPRRVEVTFERASLKPPSLL---KGVLGPL--K  146 (198)
T ss_pred             ceEEEEECC----CceEEEEEEEeccCce----EE-EEEEEEEEEEccccEEEEEEEeeEEccccee---eccchhh--h
Confidence            999999964    678999999875 443    34 8999999999999999999999999654431   1111100  0


Q ss_pred             chhhhHHHHHHHhHhhhcCCCCCCCCCCCCcceEEEEEEecCCeEEEeecCCCcEEEEE
Q 023834          211 RSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFT  269 (276)
Q Consensus       211 ~~~~~~q~l~~~~~~~~~~Pl~~~~pg~~~~~g~l~~TYLDedlRI~Rg~~~G~vFVl~  269 (276)
                      ..+.     .+-......+|++...++. .++|||+||||||||||+||+ +|++|||.
T Consensus       147 ~~~~-----~v~~~~~~~~~~~~~~~~~-~~~g~l~~tYLDedlRI~Rg~-~G~~fVl~  198 (198)
T PF04755_consen  147 DALN-----NVPRGISDELPVPLPLPGG-SPKGWLDTTYLDEDLRISRGN-KGSLFVLK  198 (198)
T ss_pred             hhhh-----hcccccccccccccccCCC-CCceEEEEEEECCCeEEEEcC-CCCEEEeC
Confidence            0000     0001111223443333332 268999999999999999996 99999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 44/295 (14%), Positives = 92/295 (31%), Gaps = 91/295 (30%)

Query: 23  NATRKLYSQMKVSGSATVA-----VDRTQ----VSEFELENKKHDLLSTIQGTQRGQNTN 73
           + T +L+  +       V      V R      +S  + E ++  +++ +   QR +  N
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 74  ADQ----RSI--------IEEALVGLEGCNMGEPIDLVKLDG------TWRLQYTSAPDV 115
            +Q     ++        + +AL+ L       P   V +DG      TW +    A DV
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTW-V----ALDV 170

Query: 116 LVLFEAAARLPF--F--KVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVS 171
            + ++   ++ F  F   +           ++   ++  ++    P    + + ++    
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSDHSS---- 221

Query: 172 AKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSL---QILQFIRAF--K 226
                    NI L+          I  EL+ L+         L L   Q  +   AF   
Sbjct: 222 ---------NIKLRIHS-------IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 227 AQIPVTNTTPGR-----RSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKAQPLEL 276
            +I +T T   R       +          ++  +            T  +   L
Sbjct: 266 CKILLT-T---RFKQVTDFLSAATTTHISLDHHSMT----------LTPDEVKSL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
4i95_A	142	Putative uncharacterized protein; lipocalin-like d	82.82
4gzv_A	142	Hypothetical protein; AN eight-stranded beta barre	80.76

>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A

Probab=82.82  E-value=14  Score=29.66  Aligned_cols=72  Identities=21%  Similarity=0.305  Sum_probs=49.6

Q ss_pred             ccCCCceEEEEEecCCchHHHHHHhccCCc-eeecceeEEEeeeeCCCCceEEEEEEeCCCccccccCccEEEEEEEEEE
Q 023834           98 LVKLDGTWRLQYTSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDV  176 (276)
Q Consensus        98 ~~lL~G~W~L~yTS~~~~~~ll~a~~~lp~-~~vg~i~Q~Id~~~~~~~~~~~N~v~~~~p~l~~~~~G~~~~v~a~~~v  176 (276)
                      ...|.|-|+|+.-.+...        ..|. +.-++.+-++.     +.+++.|++-.  |.     .++.+...++|+.
T Consensus         9 ~~~L~GvWQ~C~y~s~~p--------d~~g~L~psn~lKIlS-----dDgtF~Ni~m~--~~-----~~aiIt~~GtY~~   68 (142)
T 4i95_A            9 PAHLQGIWQLCHYVSENP--------DIPGVLKPSNTFKVLS-----DDGRIVNFTIR--PG-----TDAIITGYGTYRQ   68 (142)
T ss_dssp             CCSCCEEEEEEEEECSST--------TSCCEEEEEEEEEEEC-----TTSEEEEEECC--TT-----SCCEEEEEEEEEE
T ss_pred             cccceeEeEEEEEecCCC--------CCceEeccCccEEEEc-----CCCcEEEEEEe--cC-----CCcEEEEeEEEEe
Confidence            357999999987665431        1232 34456676665     57899999876  22     3468899999999


Q ss_pred             ccCceEEEEEEEE
Q 023834          177 VSVRNIYLQFEEV  189 (276)
Q Consensus       177 ~s~~Ri~v~F~~~  189 (276)
                      .++.......++.
T Consensus        69 ~SD~~Y~E~IeKn   81 (142)
T 4i95_A           69 ISAAAYKESIEKN   81 (142)
T ss_dssp             EETTEEEEEEEEE
T ss_pred             cCCcceeeeeccc
Confidence            9997766655554

>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}

Probab=80.76  E-value=18  Score=29.25  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=45.4

Q ss_pred             ccCCCceEEEEE-ecCCchHHHHHHhccCCc-eeecceeEEEeeeeCCCCceEEEEEEeCCCccccccCccEEEEEEEEE
Q 023834           98 LVKLDGTWRLQY-TSAPDVLVLFEAAARLPF-FKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFD  175 (276)
Q Consensus        98 ~~lL~G~W~L~y-TS~~~~~~ll~a~~~lp~-~~vg~i~Q~Id~~~~~~~~~~~N~v~~~~p~l~~~~~G~~~~v~a~~~  175 (276)
                      ..-|.|-|++++ .+...         ..|. +..+..+-+|.     +.|++.|.+-..  .     .++.+...++|+
T Consensus         9 ~~~L~GvWQ~c~y~~~~~---------~~~~~l~~s~~~KIlS-----~DgtF~N~~m~~--~-----~~aiIt~yGtY~   67 (142)
T 4gzv_A            9 AADLKGIWQLCHYVSESP---------DVPGALKPSNTFKVLS-----DDGRIVNFTIIP--G-----ADAIITGYGTYK   67 (142)
T ss_dssp             SCCCCEEEEEEEEEESST---------TSCCEEEEEEEEEEEC-----TTSEEEEEECCT--T-----SCCEEEEEEEEE
T ss_pred             cccceEEeEEeeEeecCC---------CCCceEeecCceEEEC-----CCCcEEEEEEeC--C-----CCcEEEEeEEEE
Confidence            468999999884 44322         1121 33455666665     478999998532  2     246788899999


Q ss_pred             EccCceEEEEEEE
Q 023834          176 VVSVRNIYLQFEE  188 (276)
Q Consensus       176 v~s~~Ri~v~F~~  188 (276)
                      ..++.......++
T Consensus        68 l~SD~~Y~E~i~k   80 (142)
T 4gzv_A           68 QLTDDSYKESIEK   80 (142)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             ecCCCeeeeeecc
Confidence            9999765544443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00