Citrus Sinensis ID: 023840

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLAFFCTPRLIFL
cccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHccccccccccEEEEccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEccccccccccEEEEEccccccccccccccccHHHHHcccEEEcccccccccccccccHHHcccccccccccccc
cccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEEccccEEEEEEcccccHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHcHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHcccEEEEccccccccccEEEcccccccEEEEccccccccHHHHHccccccccEEccHHHHHHcHHHHHHHHHHcccEEEEc
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRytvqvcapdseksavshsitwrhpisarpadfdgvtayavsgtpadcaslgvsqalfpsvpdlvisginmgsncgyHVVYSGTVAGAREaffhgvpsvsisydwvggksnvndytLAAEACLPIINAILAEIrnqtypercflnidlptdipnnkgykltkqgTSIFKMGWRRVtsemqggkmlstmtmdtdsavtietdtstpleedllfrrevgpfIFLSLAffctprlifl
merrgiaivnsdhkptimvtnddgidapgLRSLVRVLVSTNRYTVqvcapdseksavsHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIdlptdipnnkgykltkqgtsifkmgwRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLaffctprliFL
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLAFFCTPRLIFL
***************TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT*****************************LEEDLLFRREVGPFIFLSLAFFCTPRLIF*
****************IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLAFFCTPRLIFL
MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA***********ITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLAFFCTPRLIFL
***********DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLAFFCTPRLIFL
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MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEEDLLFRREVGPFIFLSLAFFCTPRLIFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
Q30YV9259 5'-nucleotidase SurE OS=D yes no 0.663 0.706 0.413 6e-31
Q3ADI0264 5'-nucleotidase SurE OS=C yes no 0.804 0.840 0.376 2e-30
A6LL96255 5'-nucleotidase SurE OS=T yes no 0.663 0.717 0.414 7e-30
B7IH68255 5'-nucleotidase SurE OS=T yes no 0.652 0.705 0.426 7e-30
O67004251 5'-nucleotidase SurE OS=A yes no 0.666 0.733 0.395 2e-29
B8FC91253 5'-nucleotidase SurE OS=D yes no 0.648 0.707 0.402 2e-29
Q30QB8264 5'-nucleotidase SurE OS=S yes no 0.605 0.632 0.434 2e-29
A6H213257 5'-nucleotidase SurE OS=F yes no 0.655 0.704 0.398 4e-29
Q2RJD1260 5'-nucleotidase SurE OS=M yes no 0.659 0.7 0.398 6e-29
Q5HWH7258 5'-nucleotidase SurE OS=C yes no 0.666 0.713 0.377 1e-28
>sp|Q30YV9|SURE_DESDG 5'-nucleotidase SurE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1 Back     alignment and function desciption
 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 115/196 (58%), Gaps = 13/196 (6%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I +TNDDGI APGLR++ + L     +TVQV AP +E+SAV H++T   P+  +    +G
Sbjct: 3   IALTNDDGIQAPGLRAMYKALKEAG-HTVQVVAPVTEQSAVGHAVTIALPLRVKIFAENG 61

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
                V GTP DC  LG++ AL    PD+V+SGIN G+N G  ++YSGTV+ A EA   G
Sbjct: 62  FQGMGVYGTPTDCVKLGLN-ALLDKKPDIVVSGINAGANVGPDILYSGTVSAATEAAHMG 120

Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN 196
            PS+++SYD      N     +AA A   +   I+  +  Q+ P RC LN++LP D+P  
Sbjct: 121 YPSLAVSYD------NFKPDDIAAHARFAV--EIMESMPWQSLPPRCVLNLNLP-DVPMQ 171

Query: 197 --KGYKLTKQGTSIFK 210
             KG  L  Q  +++K
Sbjct: 172 QCKGLTLCPQTRAVWK 187
Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.
Desulfovibrio desulfuricans (strain G20) (taxid: 207559)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 5
>sp|Q3ADI0|SURE_CARHZ 5'-nucleotidase SurE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6LL96|SURE_THEM4 5'-nucleotidase SurE OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|B7IH68|SURE_THEAB 5'-nucleotidase SurE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|O67004|SURE_AQUAE 5'-nucleotidase SurE OS=Aquifex aeolicus (strain VF5) GN=surE PE=1 SV=1 Back     alignment and function description
>sp|B8FC91|SURE_DESAA 5'-nucleotidase SurE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q30QB8|SURE_SULDN 5'-nucleotidase SurE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|A6H213|SURE_FLAPJ 5'-nucleotidase SurE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q2RJD1|SURE_MOOTA 5'-nucleotidase SurE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1 Back     alignment and function description
>sp|Q5HWH7|SURE_CAMJR 5'-nucleotidase SurE OS=Campylobacter jejuni (strain RM1221) GN=surE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
255552207306 5'-nucleotidase surE, putative [Ricinus 0.898 0.810 0.770 1e-110
449504179307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.894 0.804 0.722 1e-105
224108041247 predicted protein [Populus trichocarpa] 0.891 0.995 0.707 1e-104
449432702307 PREDICTED: 5'-nucleotidase SurE-like [Cu 0.894 0.804 0.722 1e-104
225432652308 PREDICTED: 5'-nucleotidase surE [Vitis v 0.905 0.811 0.72 1e-103
357444243306 5'-nucleotidase surE [Medicago truncatul 0.887 0.800 0.674 3e-99
297804776316 hypothetical protein ARALYDRAFT_493398 [ 0.931 0.813 0.681 2e-96
18414342315 5'-nucleotidase [Arabidopsis thaliana] g 0.894 0.784 0.689 4e-95
356497458303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.873 0.795 0.677 1e-94
356541721303 PREDICTED: 5'-nucleotidase surE-like [Gl 0.873 0.795 0.665 8e-94
>gi|255552207|ref|XP_002517148.1| 5'-nucleotidase surE, putative [Ricinus communis] gi|223543783|gb|EEF45311.1| 5'-nucleotidase surE, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/248 (77%), Positives = 214/248 (86%)

Query: 10  NSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA 69
           +SD KPTIM+TNDDGIDAPGLRSLVRVLV+TNR+ + VCAPDSEKSAVSHSIT+RHPISA
Sbjct: 4   SSDQKPTIMITNDDGIDAPGLRSLVRVLVATNRFRILVCAPDSEKSAVSHSITYRHPISA 63

Query: 70  RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGA 129
           R  D +G  AYA+SGTPADCASLGVS ALFPSVPDLVISGINMGSNCGYH+VYSGTVAGA
Sbjct: 64  RRVDIEGTLAYAISGTPADCASLGVSTALFPSVPDLVISGINMGSNCGYHIVYSGTVAGA 123

Query: 130 REAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL 189
           REAFF GVPS+SISYDWVGGKS + D+ L AEAC PII+AIL EI+N+TY   CFLNIDL
Sbjct: 124 REAFFFGVPSISISYDWVGGKSTIQDFALGAEACEPIISAILVEIKNRTYQSGCFLNIDL 183

Query: 190 PTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTSTPLEE 249
           PT++ N+KGYKLT+QG SIFKMGWR+V S M+G KMLSTMTMDT SAV  E D S   +E
Sbjct: 184 PTNVANHKGYKLTRQGRSIFKMGWRQVHSGMEGRKMLSTMTMDTKSAVETEVDESNESQE 243

Query: 250 DLLFRREV 257
            + FRREV
Sbjct: 244 QMWFRREV 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449504179|ref|XP_004162274.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224108041|ref|XP_002314700.1| predicted protein [Populus trichocarpa] gi|222863740|gb|EEF00871.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432702|ref|XP_004134138.1| PREDICTED: 5'-nucleotidase SurE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432652|ref|XP_002282293.1| PREDICTED: 5'-nucleotidase surE [Vitis vinifera] gi|297737043|emb|CBI26244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357444243|ref|XP_003592399.1| 5'-nucleotidase surE [Medicago truncatula] gi|355481447|gb|AES62650.1| 5'-nucleotidase surE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804776|ref|XP_002870272.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] gi|297316108|gb|EFH46531.1| hypothetical protein ARALYDRAFT_493398 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18414342|ref|NP_567449.1| 5'-nucleotidase [Arabidopsis thaliana] gi|21593317|gb|AAM65266.1| unknown [Arabidopsis thaliana] gi|27311791|gb|AAO00861.1| expressed protein [Arabidopsis thaliana] gi|30984528|gb|AAP42727.1| At4g14930 [Arabidopsis thaliana] gi|332658124|gb|AEE83524.1| 5'-nucleotidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356497458|ref|XP_003517577.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information
>gi|356541721|ref|XP_003539322.1| PREDICTED: 5'-nucleotidase surE-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2129510315 AT4G14930 "AT4G14930" [Arabido 0.894 0.784 0.689 1.7e-89
TAIR|locus:2032652385 AT1G72880 "AT1G72880" [Arabido 0.768 0.550 0.483 2.3e-48
TIGR_CMR|CHY_0957264 CHY_0957 "acid phosphatase Sur 0.826 0.863 0.373 2.6e-31
TIGR_CMR|GSU_1523262 GSU_1523 "stationary-phase sur 0.634 0.667 0.392 3.1e-28
TIGR_CMR|CJE_0339258 CJE_0339 "acid phosphatase Sur 0.663 0.709 0.385 3.5e-27
UNIPROTKB|Q9KI21258 surE "5'-nucleotidase SurE" [C 0.644 0.689 0.358 2e-24
TIGR_CMR|CBU_1671258 CBU_1671 "stationary-phase sur 0.644 0.689 0.358 2e-24
UNIPROTKB|P0A840253 surE "broad specificity 5'(3') 0.623 0.679 0.391 1.4e-23
TIGR_CMR|SPO_2688260 SPO_2688 "acid phosphatase Sur 0.811 0.861 0.320 1.8e-23
TIGR_CMR|SO_3435248 SO_3435 "stationary-phase surv 0.630 0.701 0.382 2.9e-23
TAIR|locus:2129510 AT4G14930 "AT4G14930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 173/251 (68%), Positives = 204/251 (81%)

Query:    11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISAR 70
             S  +P IMVTNDDGIDAPGLRSLVRVLVSTN Y V+VCAPDSEKSAVSHSI W  P++A+
Sbjct:    10 SGERPIIMVTNDDGIDAPGLRSLVRVLVSTNLYDVRVCAPDSEKSAVSHSIIWSRPLTAK 69

Query:    71 PADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAR 130
               + DG TAY+V GTPADC  LG+S+ALFPS PDLV+SGIN+GSNCGY++VYSGTVAGAR
Sbjct:    70 RVEIDGATAYSVDGTPADCTGLGLSEALFPSRPDLVLSGINVGSNCGYNIVYSGTVAGAR 129

Query:   131 EAFFHGVPSVSISYD--WVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNID 188
             EAF + VPS SISYD  W  G+ N ND+ L+A+ACLPIIN IL  I+N+T+P +CFLNID
Sbjct:   130 EAFLYDVPSASISYDFDWKRGEMNANDFALSAQACLPIINGILGAIKNKTHPMQCFLNID 189

Query:   189 LPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAV-TIETDTSTPL 247
             LPTDI N+KGYKLT+QG S+ KMGWR+V  E QG KMLSTMTMDT+S V + E DTS   
Sbjct:   190 LPTDIANHKGYKLTRQGKSMGKMGWRQVEEEAQGPKMLSTMTMDTESGVVSSENDTSAHA 249

Query:   248 EEDL-LFRREV 257
              +D  LF+RE+
Sbjct:   250 GKDSRLFKREL 260
GO:0003993 "acid phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2032652 AT1G72880 "AT1G72880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0957 CHY_0957 "acid phosphatase SurE" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1523 GSU_1523 "stationary-phase survival protein SurE" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0339 CJE_0339 "acid phosphatase SurE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KI21 surE "5'-nucleotidase SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1671 CBU_1671 "stationary-phase survival protein SurE" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P0A840 surE "broad specificity 5'(3')-nucleotidase and polyphosphatase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2688 SPO_2688 "acid phosphatase SurE" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3435 SO_3435 "stationary-phase survival protein SurE" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A7FQP3SURE_CLOB13, ., 1, ., 3, ., 50.34000.81520.8928yesno
A5HYC6SURE_CLOBH3, ., 1, ., 3, ., 50.34000.81520.8928yesno
C3KZ52SURE_CLOB63, ., 1, ., 3, ., 50.34410.81520.8928yesno
B0C6V3SURE_ACAM13, ., 1, ., 3, ., 50.32830.84420.8694yesno
B2A4J5SURE_NATTJ3, ., 1, ., 3, ., 50.35050.81520.8687yesno
Q3ADI0SURE_CARHZ3, ., 1, ., 3, ., 50.37690.80430.8409yesno
B8DN39SURE_DESVM3, ., 1, ., 3, ., 50.34690.81150.8327yesno
B1IDC2SURE_CLOBK3, ., 1, ., 3, ., 50.34000.81520.8928yesno
Q72A55SURE_DESVH3, ., 1, ., 3, ., 50.35510.81150.896yesno
B1KTK1SURE_CLOBM3, ., 1, ., 3, ., 50.34000.81520.8928yesno
A7G9Y6SURE_CLOBL3, ., 1, ., 3, ., 50.34000.81520.8928yesno
C1A8T7SURE_GEMAT3, ., 1, ., 3, ., 50.37150.80430.8809yesno
C1FQW9SURE_CLOBJ3, ., 1, ., 3, ., 50.34000.81520.8928yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.30.766
3rd Layer3.1.3.50.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
pfam01975188 pfam01975, SurE, Survival protein SurE 5e-70
PRK00346250 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatas 3e-63
COG0496252 COG0496, SurE, Predicted acid phosphatase [General 8e-57
TIGR00087244 TIGR00087, surE, 5'/3'-nucleotidase SurE 6e-47
PRK13935253 PRK13935, PRK13935, stationary phase survival prot 9e-45
PRK13933253 PRK13933, PRK13933, stationary phase survival prot 1e-42
PRK13932257 PRK13932, PRK13932, stationary phase survival prot 2e-31
PRK13931261 PRK13931, PRK13931, stationary phase survival prot 2e-31
PRK13934266 PRK13934, PRK13934, stationary phase survival prot 4e-23
>gnl|CDD|216821 pfam01975, SurE, Survival protein SurE Back     alignment and domain information 
 Score =  213 bits (546), Expect = 5e-70
 Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 12/195 (6%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I++TNDDGI APG+R+L   L +     V V APD E+S V HSIT   P+  +  D   
Sbjct: 3   ILLTNDDGIHAPGIRALAEALKALGE--VTVVAPDREQSGVGHSITLHRPLRVKKVDP-- 58

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHG 136
             AYAV+GTPADC  LG++  L    PDLV+SGIN G+N G  V+YSGTV  A EA   G
Sbjct: 59  -GAYAVNGTPADCVKLGLNGLLDDKKPDLVVSGINHGANLGTDVLYSGTVGAAMEAALLG 117

Query: 137 VPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN 196
           +PS+++S          +D+  AA+    ++  ++ ++     P    LN+++P   P+ 
Sbjct: 118 IPSIAVSLAG--NSEEKDDFETAAK----LVRRLVEKLLKNGLPPGTLLNVNIPDLPPSE 171

Query: 197 -KGYKLTKQGTSIFK 210
            KG K+T+ G   + 
Sbjct: 172 IKGIKVTRLGRRRYA 186

E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family, probable tubulin-tyrosine ligase PBY1. Yarrowia lipolytica PHO2 can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. Length = 188
>gnl|CDD|234732 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>gnl|CDD|223570 COG0496, SurE, Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE Back     alignment and domain information
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional Back     alignment and domain information
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
PRK13932257 stationary phase survival protein SurE; Provisiona 100.0
COG0496252 SurE Predicted acid phosphatase [General function 100.0
PRK13935253 stationary phase survival protein SurE; Provisiona 100.0
PRK13933253 stationary phase survival protein SurE; Provisiona 100.0
PRK00346250 surE 5'(3')-nucleotidase/polyphosphatase; Provisio 100.0
PRK13931261 stationary phase survival protein SurE; Provisiona 100.0
TIGR00087244 surE 5'/3'-nucleotidase SurE. E. coli SurE is Reco 100.0
PRK13934266 stationary phase survival protein SurE; Provisiona 100.0
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 100.0
PLN02846 462 digalactosyldiacylglycerol synthase 89.67
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 88.22
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 85.94
PF14336291 DUF4392: Domain of unknown function (DUF4392) 83.75
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 81.23
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 80.95
cd03814364 GT1_like_2 This family is most closely related to 80.85
>PRK13932 stationary phase survival protein SurE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7e-70  Score=498.19  Aligned_cols=221  Identities=31%  Similarity=0.494  Sum_probs=193.3

Q ss_pred             CCCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHHH
Q 023840           12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCA   90 (276)
Q Consensus        12 ~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV   90 (276)
                      +++|||||||||||+||||++|+++|++.|  +|+||||++||||+||++|+++||++++++.+ +..+|+|+|||||||
T Consensus         3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV   80 (257)
T PRK13932          3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI   80 (257)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence            467999999999999999999999999877  89999999999999999999999999998744 456899999999999


Q ss_pred             HHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHH
Q 023840           91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI  170 (276)
Q Consensus        91 ~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l  170 (276)
                      ++||++ +++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+...    ...+|+.|++++.++++++
T Consensus        81 ~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~----~~~~~~~aa~~~~~l~~~l  155 (257)
T PRK13932         81 KVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTY----ENADFTYAGKFARKLARKV  155 (257)
T ss_pred             HHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccC----CcCCHHHHHHHHHHHHHHH
Confidence            999996 56778999999999999999999999999999999999999999998632    1237999999998888876


Q ss_pred             HHHHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCC
Q 023840          171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTS  244 (276)
Q Consensus       171 ~~~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~  244 (276)
                      +    ...+|++++||||||.++ .+.+|+|+||||++.|.+.++++ .+|+|++|||.+....+.+..++||+.
T Consensus       156 ~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~-~dp~g~~yywl~~~~~~~~~~~~tD~~  225 (257)
T PRK13932        156 L----REGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIER-HDMYGNPYYWLNGTLQLLDDSLTQDEY  225 (257)
T ss_pred             H----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEe-ECcCCCeEEEECCCccCCCCCCCChHH
Confidence            6    356899999999999976 56899999999999999999887 599999999998322222334566654

>COG0496 SurE Predicted acid phosphatase [General function prediction only] Back     alignment and domain information
>PRK13935 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK13933 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional Back     alignment and domain information
>PRK13931 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>TIGR00087 surE 5'/3'-nucleotidase SurE Back     alignment and domain information
>PRK13934 stationary phase survival protein SurE; Provisional Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF14336 DUF4392: Domain of unknown function (DUF4392) Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
2wqk_A251 Crystal Structure Of Sure Protein From Aquifex Aeol 1e-30
2e69_A244 Crystal Structure Of The Stationary Phase Survival 4e-22
3ty2_A261 Structure Of A 5'-Nucleotidase (Sure) From Coxiella 5e-22
1j9j_A247 Crystal Structure Analysis Of Sure Protein From T.M 1e-21
2e6h_A244 Crystal Structure Of E37a Mutant Of The Stationary 2e-21
2v4n_A254 Crystal Structure Of Salmonella Typhimurium Sure At 6e-21
2v4o_A267 Crystal Structure Of Salmonella Typhimurium Sure At 6e-21
1ilv_A247 Crystal Structure Analysis Of The Tm107 Length = 24 1e-20
1l5x_A280 The 2.0-Angstrom Resolution Crystal Structure Of A 2e-16
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus Length = 251 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 108/197 (54%), Gaps = 13/197 (6%)
Query: 15  PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF 74
           PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D 
Sbjct: 2   PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 75  DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFF 134
           D  T   + GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E   
Sbjct: 60  DFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRI 117
Query: 135 HGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DI 193
            G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P    
Sbjct: 118 LGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRY 169
Query: 194 PNNKGYKLTKQGTSIFK 210
              KG K+T+QG   +K
Sbjct: 170 EEIKGIKVTRQGKRAYK 186
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 In Complex With Sulfate Length = 244 Back     alignment and structure
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella Burnetii Length = 261 Back     alignment and structure
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima Length = 247 Back     alignment and structure
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase Survival Protein Sure From Thermus Thermophilus Hb8 Cocrystallized With Manganese And Amp Length = 244 Back     alignment and structure
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7 Angstrom Resolution In Orthorhombic Form Length = 254 Back     alignment and structure
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75 Angstrom Resolution In Monoclinic Form Length = 267 Back     alignment and structure
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107 Length = 247 Back     alignment and structure
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A Survival Protein E (Sure) Homolog From Pyrobaculum Aerophilum Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 3e-65
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 1e-64
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 2e-64
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 8e-64
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 1e-63
1l5x_A280 SurviVal protein E; structural genomics, putative 3e-62
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Back     alignment and structure
 Score =  203 bits (518), Expect = 3e-65
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-D 75
           I+VTNDDGI + G+  L  +L  +  + V V APD E+SA  HSIT   P+  +     +
Sbjct: 3   ILVTNDDGIQSKGIIVLAELL--SEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60

Query: 76  GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFH 135
            V AY+ +GTPADC  L  +  +     DL++SG+N G N G  +++SGTV+GA E    
Sbjct: 61  RVVAYSTTGTPADCVKLAYN-VVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
            +PS++IS        +  D+  AA   +  +                 LNI    ++P 
Sbjct: 120 NIPSIAISSA---NYESP-DFEGAARFLIDFLKEFDF----SLLDPFTMLNI----NVPA 167

Query: 196 N--KGYKLTKQGTSIFK 210
              KG++ T+Q    + 
Sbjct: 168 GEIKGWRFTRQSRRRWN 184
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} Length = 261 Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
3ty2_A261 5'-nucleotidase SURE; surviVal protein, phosphatas 100.0
2phj_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
1j9j_A247 Stationary phase surviVal protein; SURE protein, u 100.0
2wqk_A251 5'-nucleotidase SURE; SURE protein, putative acid 100.0
2v4n_A254 Multifunctional protein SUR E; hydrolase, surviVal 100.0
2e6c_A244 5'-nucleotidase SURE; SURE protein, cowith mangane 100.0
1l5x_A280 SurviVal protein E; structural genomics, putative 100.0
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 94.81
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 93.99
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 92.94
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 92.94
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 92.74
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 92.07
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 91.53
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 91.06
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 90.36
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 84.19
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0 Back     alignment and structure
Probab=100.00  E-value=9.2e-72  Score=509.90  Aligned_cols=220  Identities=31%  Similarity=0.469  Sum_probs=194.7

Q ss_pred             CCCCCeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCCCCeeEEecCChHHHH
Q 023840           11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCA   90 (276)
Q Consensus        11 ~~~~~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV   90 (276)
                      ..++|||||||||||+||||++|+++|++ + |+|+||||++||||+||++|+++||++++++   ...|+|+|||+|||
T Consensus         8 ~~~~m~ILlTNDDGi~apGi~aL~~~l~~-~-~~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~---~~~~~v~GTPaDCV   82 (261)
T 3ty2_A            8 ATPKLRLLLSNDDGVYAKGLAILAKTLAD-L-GEVDVVAPDRNRSGASNSLTLNAPLHIKNLE---NGMISVEGTPTDCV   82 (261)
T ss_dssp             ---CCEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCEEEEECT---TSCEEESSCHHHHH
T ss_pred             cCCCCeEEEEcCCCCCCHHHHHHHHHHHh-c-CCEEEEecCCCCcCcccceecCCCeEEEEec---CCeEEECCCHHHHH
Confidence            45679999999999999999999999998 3 6999999999999999999999999999875   23599999999999


Q ss_pred             HHhhhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHH
Q 023840           91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI  170 (276)
Q Consensus        91 ~~al~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l  170 (276)
                      ++||++ +++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+...    ...+|+.|++++.++++++
T Consensus        83 ~lal~~-l~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~~~----~~~~~~~aa~~~~~lv~~l  157 (261)
T 3ty2_A           83 HLAITG-VLPEMPDMVVAGINAGPNLGDDVWYSGTVAAAMEGRFLGLPALAVSLGGE----LFRYYETAAKVVYQLIQRI  157 (261)
T ss_dssp             HHHTTT-TSSSCCSEEEEEEEESCCCGGGGGTCHHHHHC-CCSTTSCCEEEEEECSS----SCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hcCCCCCEEEECCcCCCCCCCCcCCchHHHHHHHHHHcCCCeEEEEcCCC----CccCHHHHHHHHHHHHHHH
Confidence            999997 56778999999999999999999999999999999999999999999742    3458999999999998887


Q ss_pred             HHHHHhCCCCCCcEEEecCCCCC-CCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCCCC
Q 023840          171 LAEIRNQTYPERCFLNIDLPTDI-PNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDTST  245 (276)
Q Consensus       171 ~~~~~~~~~p~~~~LNVN~P~~~-~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~~~  245 (276)
                      +    +..+|++++||||||..+ .+.+|+|+||||++.|.+.++++ .+|+|++|||.+..+.+.+..++||++-
T Consensus       158 ~----~~~lp~~~~lNVN~P~~~~~~~kGi~vtr~g~r~~~~~~~~~-~dprG~~yyW~~g~~~~~~~~~gTD~~a  228 (261)
T 3ty2_A          158 E----KDPLPPSTILNINVPDLPYEELKGFEVTRLGTRHRAEPTIRQ-IDPRGHPIYWVGAAGPEQDSGPGTDFFA  228 (261)
T ss_dssp             H----HSCCCTTCEEEEEECSSCGGGCCEEEECBCCCBCSCCCCEEE-ECTTSCEEEECCCCCCBSSCSTTBHHHH
T ss_pred             H----hcCCCCCeEEEecCCCCCcccCCceEEEECcccccccceEEE-ECCCCCeEEEEcCCcccccCCCCChHHH
Confidence            6    346899999999999976 56899999999999999999887 6999999999987766667777887643
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Back     alignment and structure
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} Back     alignment and structure
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Back     alignment and structure
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Back     alignment and structure
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1l5xa_276 c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) { 7e-47
d1j9ja_247 c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga mar 3e-42
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog PAE2908 (SurE-alpha)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  156 bits (394), Expect = 7e-47
 Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 12/243 (4%)

Query: 17  IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG 76
           I+VTNDDG+ +PGLR L +  +S     V V AP+S KSA    IT   P+     D  G
Sbjct: 3   ILVTNDDGVHSPGLRLLYQFALS--LGDVDVVAPESPKSATGLGITLHKPLRMYEVDLCG 60

Query: 77  VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVY-SGTVAGAREAFFH 135
             A A SGTP+D   L           D+V+SGIN+G N    V+  SGT+  A +A   
Sbjct: 61  FRAIATSGTPSDTVYLATFGLGRK--YDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 136 GVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPN 195
           G+P+++ S         +N+          + +     ++N        ++++ P  +  
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178

Query: 196 NKGYKLTKQGTSIFKMGWRRVTSEMQ------GGKMLSTMTMDTDSAVTIETDTS-TPLE 248
               KL K     +                   G+ L+         V  E   + TPL 
Sbjct: 179 GVRAKLVKAAKLRYAQQVVERVDPRGVRYYWLYGRDLAPEPETDVYVVLKEGGIAITPLT 238

Query: 249 EDL 251
            +L
Sbjct: 239 LNL 241
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1j9ja_247 SurE homolog TM1662 {Thermotoga maritima [TaxId: 2 100.0
d1l5xa_276 SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyroba 100.0
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 87.55
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 86.6
d1wd5a_208 Putative phosphoribosyltransferase TT1426 (TTHA146 81.8
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SurE-like
superfamily: SurE-like
family: SurE-like
domain: SurE homolog TM1662
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-68  Score=481.98  Aligned_cols=215  Identities=32%  Similarity=0.444  Sum_probs=189.3

Q ss_pred             CeEEEecCCCCCCcCHHHHHHHHHhcCCccEEEEeeCCCCCcCcccccCCCCeeeeeccCC-CCeeEEecCChHHHHHHh
Q 023840           15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLG   93 (276)
Q Consensus        15 ~~ILlTNDDGi~spGi~aL~~aL~~~g~~~V~VVAP~~~qSg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV~~a   93 (276)
                      |||||||||||+||||++|+++|++ + |+|+||||++||||+|||+|+++|++++++..+ +..+|+|+|||||||++|
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~-~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~a   78 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-E-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLA   78 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-T-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCChHHHHHHHHHhc-C-CeEEEEecCCCCcCCcccccCCCCcceEEeecCCCceEEEeCCchHHHHHHh
Confidence            7999999999999999999999976 4 799999999999999999999999999998753 456899999999999999


Q ss_pred             hhcccCCCCCcEEEecCCCCCCCccccccchhHHHHHHHHHcCCCEEEEeeecCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 023840           94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE  173 (276)
Q Consensus        94 l~~~l~~~~PDLVVSGIN~G~N~G~~v~ySGTVgAA~Ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~  173 (276)
                      |++ +++.+|||||||||+|.|+|.+++||||||||+||+++||||||+|+.+.    +..+|+.+++++.+++++++  
T Consensus        79 l~~-l~~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~----~~~~~~~a~~~~~~li~~l~--  151 (247)
T d1j9ja_          79 YNV-VMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY----ESPDFEGAARFLIDFLKEFD--  151 (247)
T ss_dssp             HHT-TSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS----SSCCHHHHHHHHHHHHHHCC--
T ss_pred             hhh-cccCcccEEEecccCCCccchhhhhHHHHHHHHHHHhcCCCcceehhhhh----cccchhHHHHHHHHHHHHHH--
Confidence            986 67789999999999999999999999999999999999999999999743    34589999999888877654  


Q ss_pred             HHhCCCCCCcEEEecCCCCCCCCCCEEEEecccccccceEEEeeecCCCceeeeeccCCCCCcccccCCC
Q 023840          174 IRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDT  243 (276)
Q Consensus       174 ~~~~~~p~~~~LNVN~P~~~~~~~g~~~tr~g~~~~~~~~~~~~~~~~G~~~yw~~t~~~~~~~~~~~~~  243 (276)
                        +..+|++++||||||..  +.+|+++|++|++.|...+.++ .+++|++|||.+....+.+..+++|+
T Consensus       152 --~~~~p~~~~lNVN~P~~--~~kG~k~t~~g~~~~~~~~~~~-~~~~g~~~y~~~~~~~~~~~~~~tD~  216 (247)
T d1j9ja_         152 --FSLLDPFTMLNINVPAG--EIKGWRFTRQSRRRWNDYFEER-VSPFGEKYYWMMGEVIEDDDRDDVDY  216 (247)
T ss_dssp             --GGGSCTTCEEEEEECSS--CCCEEEECBCCCCEEEEEEEEE-ECTTSCEEEEEEEEEECCCCCSSBHH
T ss_pred             --hcCCcccccccCCCChh--hccCceeeeeccccccccceee-eCCCCCeeEEeccCccCCCCCCChHH
Confidence              45689999999999963  5899999999999999888876 58999999999654444444455553
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure