Citrus Sinensis ID: 023854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHcccccccccEEEEEEEcccccEEEEEEEEcccEEEEEEEEEEEEccEEEEEEEcccccEEEEEEEcccccccEEEEEEEEccccccEEEEEEEccccEEEEEEEEccccEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEcccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEcEccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEEEEEcccccccEEEEEEEcccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEcccccccEcEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
mvkgpglysEIGKKARDLLYKdyqsdhkftvTTYTSAgvaitssgvkkGELFLADVSTQlknknittdvkvdtnsnlfttitvdepapglksifsfivpdqrsgkveLQYQHeyagistgigftanpivnfsgvvgnnsvalgtdlsfdtatgnftkcnaglsytHTDLIASltlndkgdtlnasYYHIVSPLTNTAVGAElthsfssnentltigtqhaldpltsVKARVNNYGRASAliqhewrpkslftisgEVDTRAIEKSAKIGLALALKP
Flexible Loop (DISEMBL)
mvkgpglyseIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVStqlknknittdvkvdtnsNLFTtitvdepapglKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRAsaliqhewrpkslFTISGEVDTRAIEKSAKIGLALALKP
Low Complexity Region (SEG)
MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIvnfsgvvgnnsvALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Disordered region (IsUnstruct)
**********IGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGL******
Disordered Region (DISOPRED)
***GPGL*SEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGV******LADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Disordered Region (DISEMBL)
MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Disordered Region (DISPRO)
***GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
P42056	276	Mitochondrial outer membr	N/A	no	1.0	1.0	0.869	1e-142
P42055	276	Mitochondrial outer membr	N/A	no	1.0	1.0	0.786	1e-130
P42054	276	Outer plastidial membrane	N/A	no	1.0	1.0	0.739	1e-120
Q9SRH5	276	Mitochondrial outer membr	yes	no	1.0	1.0	0.739	1e-118
Q9SMX3	274	Mitochondrial outer membr	no	no	0.992	1.0	0.688	1e-111
Q6K548	274	Mitochondrial outer membr	yes	no	0.985	0.992	0.695	1e-111
P46274	275	Mitochondrial outer membr	N/A	no	0.985	0.989	0.686	1e-106
Q7F4F8	275	Mitochondrial outer membr	no	no	0.985	0.989	0.652	1e-102
P42057	277	Outer plastidial membrane	N/A	no	0.996	0.992	0.608	3e-95
Q6L5I5	280	Mitochondrial outer membr	no	no	0.971	0.957	0.627	3e-92

>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/276 (86%), Positives = 265/276 (96%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQL
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T 
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TA+P+VNFSGV GNN+VALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           T++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASAL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.
Solanum tuberosum (taxid: 4113)

>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/276 (78%), Positives = 251/276 (90%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           M KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LFLADV+TQL
Sbjct: 1   MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T 
Sbjct: 61  KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +G TANPIVNFSGVVG N +ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
            L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQH LDPLTSVKAR+NN+G+ASAL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           +QHEWRPKSLFT+SGEVDT++++K AK GLALALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Solanum tuberosum (taxid: 4113)

>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/276 (73%), Positives = 238/276 (86%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELFL DV+TQL
Sbjct: 1   MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ 
Sbjct: 61  KNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +G  ANPIVNFS V+G N++A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
            L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQHALDPLT+VK RV N G+ASAL
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSL TIS EVDT+AIEKSAKIGL+LALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Pisum sativum (taxid: 3888)

>sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/276 (73%), Positives = 240/276 (86%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q 
Sbjct: 1   MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST 
Sbjct: 61  RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +G T NP VNFSGV+G+N +A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD
Sbjct: 121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
            LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH+LDPLTSVKARVN+ G ASAL
Sbjct: 181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEW+PKS FTISGEVDT++I+KSAK+GLALALKP
Sbjct: 241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective (By similarity). Involved in plant development at reproductive stage, is important for pollen development and may regulate hydrogen peroxide generation during disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana GN=VDAC3 PE=1 SV=3

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/276 (68%), Positives = 232/276 (84%), Gaps = 2/276 (0%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+
Sbjct: 1   MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST 
Sbjct: 61  KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +GFTA PIVNFSGVVG N ++LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
            LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQHALDPLT+VKARVNN G A+AL
Sbjct: 181 KLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANAL 238

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKS FT+SGEVD++AI+KSAK+G+ALALKP
Sbjct: 239 IQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/273 (69%), Positives = 231/273 (84%), Gaps = 1/273 (0%)

Query: 4   GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
           GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L   ++ +Q+KNK
Sbjct: 3   GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNK 62

Query: 64  NITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGF 123
           NIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG 
Sbjct: 63  NITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGL 122

Query: 124 TANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLN 183
           TA+P+VN S V G  ++A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L 
Sbjct: 123 TASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLT 182

Query: 184 ASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQH 243
           ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR NN G+ASAL+QH
Sbjct: 183 ASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQH 241

Query: 244 EWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           EWRPKS++TIS EVDT+AI+KS+K+G+A+ALKP
Sbjct: 242 EWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P46274|VDAC1_WHEAT Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/274 (68%), Positives = 228/274 (83%), Gaps = 2/274 (0%)

Query: 4   GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
           GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNK
Sbjct: 3   GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNK 62

Query: 64  NITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIG 122
           NIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG
Sbjct: 63  NITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIG 122

Query: 123 FTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTL 182
            TANP+VN SG  G +++A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L
Sbjct: 123 LTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSL 182

Query: 183 NASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQ 242
            ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR+NN G+ASALIQ
Sbjct: 183 TASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQ 241

Query: 243 HEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           HE+ PKSL TIS EVDT+AIEKS+K+G+A+ALKP
Sbjct: 242 HEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Triticum aestivum (taxid: 4565)

>sp|Q7F4F8|VDAC3_ORYSJ Mitochondrial outer membrane protein porin 3 OS=Oryza sativa subsp. japonica GN=VDAC3 PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/273 (65%), Positives = 219/273 (80%), Gaps = 1/273 (0%)

Query: 4   GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
            PGLY++IGKK RDLLY+DY + HKFT+TT T  GV IT++G +K E    ++ TQLKNK
Sbjct: 2   APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61

Query: 64  NITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIG 122
            +T DVK ++ S+L TT+TVDE   PGLKSI S +VPDQRSGK+ELQY HEYAGI+  +G
Sbjct: 62  KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121

Query: 123 FTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTL 182
             +NP+VN SGV G+  +++G D++FDTAT NFTK NA LS T++DLIASL LN+ GDTL
Sbjct: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181

Query: 183 NASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQ 242
            ASYYH+V   +NTAVGAEL+HSFS NE+TL  G+QH+LDP T+VKAR NNYG ASAL+Q
Sbjct: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241

Query: 243 HEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 275
           HEWRPKSL TISGEVDT+AIEKS K+GL+L LK
Sbjct: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P42057|VDAC_MAIZE Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1

 Score =  348 bits (892), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 168/276 (60%), Positives = 212/276 (76%), Gaps = 1/276 (0%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MV   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E    ++ TQ+
Sbjct: 1   MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQI 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGIST 119
           KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++ 
Sbjct: 61  KNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNA 120

Query: 120 GIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKG 179
            +G  +NP+VN SG  G+ ++++G D+SFDTAT +FTK NA LS T  DLIASL LN+ G
Sbjct: 121 SVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHG 180

Query: 180 DTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASA 239
           DTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+QH+LDP T++K R NNYG ASA
Sbjct: 181 DTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASA 240

Query: 240 LIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 275
           L+QHEWRPKS  TISG+VDT+AIEKS K+GL+L LK
Sbjct: 241 LVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276

Forms a channel through the cell membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Zea mays (taxid: 4577)

>sp|Q6L5I5|VDAC2_ORYSJ Mitochondrial outer membrane protein porin 2 OS=Oryza sativa subsp. japonica GN=VDAC2 PE=2 SV=1

 Score =  338 bits (867), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/271 (62%), Positives = 211/271 (77%), Gaps = 3/271 (1%)

Query: 7   LYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNIT 66
           LYS+IGKKARDLLY+DY +D KFT+TTY + G AIT +G KK E   +++ +Q+KN N++
Sbjct: 12  LYSDIGKKARDLLYRDYHTDQKFTLTTYAANGAAITVAGTKKNESIFSEIQSQVKNNNVS 71

Query: 67  TDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTA 125
            DVK  ++S L TT TV D   PGLK I S   P Q+S K E+QY H +AG++  +G  A
Sbjct: 72  VDVKATSDSKLITTFTVHDLGTPGLKGILSIPFPYQKSAKAEVQYLHPHAGLNAIVGLNA 131

Query: 126 NPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNAS 185
           NP+V+FSGV G  + A+GTD++FDTATG+FTK NAGLS+T  DL A+L LN+KGD+L AS
Sbjct: 132 NPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAAS 191

Query: 186 YYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEW 245
           YYH VS    +AVGAEL HSFSSNENTLT GTQHALD LT+VKAR NN+G ASALIQHE+
Sbjct: 192 YYHKVSK--TSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEF 249

Query: 246 RPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           RPKSL TIS EVDT+AI+KS+K+GL+L LKP
Sbjct: 250 RPKSLVTISTEVDTKAIDKSSKVGLSLVLKP 280

Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. The open state has a weak anion selectivity whereas the closed state is cation-selective.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224102711	276	porin/voltage-dependent anion-selective	1.0	1.0	0.887	1e-142
5031279	276	porin [Prunus armeniaca]	1.0	1.0	0.884	1e-142
225424908	276	PREDICTED: mitochondrial outer membrane	1.0	1.0	0.880	1e-141
449458029	276	PREDICTED: mitochondrial outer membrane	1.0	1.0	0.873	1e-140
161788874	276	voltage-dependent anion channel [Nicotia	1.0	1.0	0.873	1e-140
255558216	276	voltage-dependent anion-selective channe	1.0	1.0	0.873	1e-140
1172556	276	RecName: Full=Mitochondrial outer membra	1.0	1.0	0.869	1e-140
515358	276	36kDa porin I [Solanum tuberosum]	1.0	1.0	0.865	1e-139
224102515	276	porin/voltage-dependent anion-selective	1.0	1.0	0.880	1e-139
1256259	276	voltage-dependent anion channel protein	1.0	1.0	0.865	1e-137

>gi|224102711|ref|XP_002312786.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|118481103|gb|ABK92505.1| unknown [Populus trichocarpa] gi|222852606|gb|EEE90153.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/276 (88%), Positives = 266/276 (96%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           M KGPGLY +IGKKARDLLYKDYQSDHKFTVTTYTSAGVAITS+G+KKGELFLAD+S+QL
Sbjct: 1   MGKGPGLYFDIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSTGIKKGELFLADISSQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTDVKVDTNSNL TTIT+DEPAPGLK+IFSF VPDQRSGKVELQYQHEYAGIST 
Sbjct: 61  KNKNITTDVKVDTNSNLLTTITIDEPAPGLKTIFSFKVPDQRSGKVELQYQHEYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +G TANPIVNFSGVVG+N VALGTDLSFDTATGNFTKCNAGLSYT++DLIASLT+NDKGD
Sbjct: 121 LGLTANPIVNFSGVVGSNVVALGTDLSFDTATGNFTKCNAGLSYTNSDLIASLTVNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           TL+ASYYH VSPLT+TAVGAELTHSFSSNEN LTIGTQHALDPLT+VKAR+NNYG+ SAL
Sbjct: 181 TLSASYYHTVSPLTSTAVGAELTHSFSSNENILTIGTQHALDPLTTVKARLNNYGKVSAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQ+EWRPKSLFTISGEVDT+AIEKSAK+GLAL+LKP
Sbjct: 241 IQNEWRPKSLFTISGEVDTKAIEKSAKVGLALSLKP 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5031279|gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/276 (88%), Positives = 263/276 (95%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLY +IGKKARDLLYKDYQSDHKFTVTTYTS GVAI+S+G++KG+L+L DVSTQL
Sbjct: 1   MVKGPGLYLDIGKKARDLLYKDYQSDHKFTVTTYTSTGVAISSTGIRKGDLYLGDVSTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTDVKVDT+SNL TTIT+DEPAPGLK+IFSFIVPDQRSGKVELQYQHEYAGIST 
Sbjct: 61  KNKNITTDVKVDTDSNLRTTITIDEPAPGLKAIFSFIVPDQRSGKVELQYQHEYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TANPIVNFSGVVGNN ++LGTDLSFDTA+GNFTKCNAGL++THTDLIASL LNDK D
Sbjct: 121 IGLTANPIVNFSGVVGNNLLSLGTDLSFDTASGNFTKCNAGLNFTHTDLIASLILNDKAD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           T+ ASYYH VSPLTNTAVGAEL+HSFSSNEN+LTIGTQHALDPLT+VK RVNNYGRASAL
Sbjct: 181 TVTASYYHTVSPLTNTAVGAELSHSFSSNENSLTIGTQHALDPLTTVKGRVNNYGRASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKS FTISGEVDTRAIEKSAKIGLALALKP
Sbjct: 241 IQHEWRPKSFFTISGEVDTRAIEKSAKIGLALALKP 276

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424908|ref|XP_002276636.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa isoform 1 [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/276 (88%), Positives = 261/276 (94%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           M KGPGLYS+IGK ARDLLY+DYQSDHKFTVTTYTS+GVAITSSG KKGELF+ADV+TQL
Sbjct: 1   MGKGPGLYSDIGKIARDLLYRDYQSDHKFTVTTYTSSGVAITSSGTKKGELFIADVNTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTDVKVDTNSNLFTTITVDEPAPGLK+IFSFI+PDQRSGKVELQY HEYAGIST 
Sbjct: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIPDQRSGKVELQYLHEYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TANPIVNFSGVVGNN+++LGTDLSFDTATGNFTKCNAGL +++ DLIA+LTLNDKGD
Sbjct: 121 IGLTANPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCNAGLGFSNADLIAALTLNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           TLNASYYH VSPLTNTAVGAEL+H FS+NENTLTIGTQHALDPLT VKAR NN G+ SAL
Sbjct: 181 TLNASYYHTVSPLTNTAVGAELSHCFSTNENTLTIGTQHALDPLTKVKARANNSGKVSAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVD RA+EKSAKIGLALALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDARAVEKSAKIGLALALKP 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458029|ref|XP_004146750.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Cucumis sativus] gi|449505663|ref|XP_004162535.1| PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Cucumis sativus]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/276 (87%), Positives = 264/276 (95%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           M KGPGLYS+IGKKARDLLYKDYQSDHKFTVTTYTS GVAI+S+G+KKGE+FLADVSTQL
Sbjct: 1   MGKGPGLYSDIGKKARDLLYKDYQSDHKFTVTTYTSGGVAISSTGIKKGEIFLADVSTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KN NITTDVKVDT+SN+ TT+T+DEPAPGLK+IFSF VPDQRSGKVELQYQHEYAGISTG
Sbjct: 61  KNNNITTDVKVDTHSNVHTTVTIDEPAPGLKTIFSFRVPDQRSGKVELQYQHEYAGISTG 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TA+PIVNF+GV+GN+ ++LGTDLSFDTA+GN TK NAGLSYTH+DLIA+LTLNDKGD
Sbjct: 121 IGLTASPIVNFAGVIGNDKLSLGTDLSFDTASGNITKLNAGLSYTHSDLIAALTLNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
            L ASYYH+VSPL+NTAVGAEL+HSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL
Sbjct: 181 ALTASYYHLVSPLSNTAVGAELSHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDTRAI+KSAKIGLAL LKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIDKSAKIGLALVLKP 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|161788874|dbj|BAF95071.1| voltage-dependent anion channel [Nicotiana tabacum]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/276 (87%), Positives = 265/276 (96%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY+S GVAITSSG+KKGELFLADV+TQL
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSSTGVAITSSGLKKGELFLADVNTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKN+TTDVKVDTNSN++TTITVDEPAPGLK+I SF++PDQRSGKVELQY HEYAGISTG
Sbjct: 61  KNKNVTTDVKVDTNSNVYTTITVDEPAPGLKTIVSFVLPDQRSGKVELQYLHEYAGISTG 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TA+P+VNFSGV GNN+VALGTDLSFDTA+GNFTKCNAGLS++ +DLIASL LNDKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTASGNFTKCNAGLSFSTSDLIASLALNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           TL+ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASAL
Sbjct: 181 TLSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558216|ref|XP_002520135.1| voltage-dependent anion-selective channel, putative [Ricinus communis] gi|223540627|gb|EEF42190.1| voltage-dependent anion-selective channel, putative [Ricinus communis]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/276 (87%), Positives = 266/276 (96%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           M KGPGLY++IGKKARDLLYKDYQ DHKFTVTTYTS GVAITS+G+KKGE++L D+++QL
Sbjct: 1   MGKGPGLYTDIGKKARDLLYKDYQGDHKFTVTTYTSTGVAITSTGIKKGEIYLGDITSQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTD+KVDT+SN+ TTITVDEPAPGLK+IFSF +PDQRSGKVELQYQHE+AGIST 
Sbjct: 61  KNKNITTDIKVDTSSNVSTTITVDEPAPGLKTIFSFKIPDQRSGKVELQYQHEHAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TANPIVNFSGV+G+++VALGTDLSFDTA+GNFTK NAGLSY++TDLIASLTLNDKGD
Sbjct: 121 IGLTANPIVNFSGVIGSSAVALGTDLSFDTASGNFTKLNAGLSYSNTDLIASLTLNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLT GTQHALDPLT+VKARVN+YG+ASAL
Sbjct: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTFGTQHALDPLTTVKARVNSYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1172556|sp|P42056.2|VDAC2_SOLTU RecName: Full=Mitochondrial outer membrane protein porin of 36 kDa; AltName: Full=POM 36; AltName: Full=Voltage-dependent anion-selective channel protein; Short=VDAC gi|515360|emb|CAA56600.1| 36kDA porin II [Solanum tuberosum]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/276 (86%), Positives = 265/276 (96%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQL
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T 
Sbjct: 61  KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TA+P+VNFSGV GNN+VALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           T++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASAL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|515358|emb|CAA56601.1| 36kDa porin I [Solanum tuberosum]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/276 (86%), Positives = 264/276 (95%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQL
Sbjct: 1   MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTDVKVD NSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T 
Sbjct: 61  KNKNITTDVKVDANSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           IG TA+P+VNFSGV GNN+VALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGD
Sbjct: 121 IGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           T++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDPLT+VKARVN+YG+ASAL
Sbjct: 181 TVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDTRAIEKSAKIGLA+ALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102515|ref|XP_002312708.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa] gi|118484777|gb|ABK94257.1| unknown [Populus trichocarpa] gi|222852528|gb|EEE90075.1| porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/276 (88%), Positives = 261/276 (94%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           M KGPGLY +IGKKARDLLYKDYQSDHKFTVTTYTS GVA+TS+G+KKGELFLADVS QL
Sbjct: 1   MGKGPGLYVDIGKKARDLLYKDYQSDHKFTVTTYTSTGVALTSTGIKKGELFLADVSGQL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
           KNKNITTD+KVDTNSNL TTIT+DEPAPGLK+IFSF VPDQRSGKVELQYQHEYAGIST 
Sbjct: 61  KNKNITTDIKVDTNSNLLTTITIDEPAPGLKTIFSFKVPDQRSGKVELQYQHEYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +G TANPIVNFSGV+G+N V+LGTDLSFDTATGNFTK NAGLSYT+ DLIASLT+NDKGD
Sbjct: 121 LGLTANPIVNFSGVIGSNVVSLGTDLSFDTATGNFTKYNAGLSYTNADLIASLTVNDKGD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
           TL ASYYH V PLT+TAVGAELT SFSSNENTLTIGTQHALDPLT+VKAR+NNYG+ASAL
Sbjct: 181 TLTASYYHTVRPLTSTAVGAELTRSFSSNENTLTIGTQHALDPLTTVKARLNNYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKSLFTISGEVDT+AIEKSAKIGLALALKP
Sbjct: 241 IQHEWRPKSLFTISGEVDTKAIEKSAKIGLALALKP 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1256259|gb|AAA96275.1| voltage-dependent anion channel protein [Spinacia oleracea]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/276 (86%), Positives = 260/276 (94%)

Query: 1   MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
           MVKGPGLYS+IGK+ARDLLY+DYQSDHKFT+TTYT+ GVAITS+G KKGELFLADVST+L
Sbjct: 1   MVKGPGLYSDIGKRARDLLYRDYQSDHKFTLTTYTANGVAITSTGTKKGELFLADVSTKL 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
            NKNITTDVKVDTNSNLFTTITVDEPAPGLK+IFSF VPDQRSGKVELQY HEYAGIST 
Sbjct: 61  TNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTS 120

Query: 121 IGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
           +G TANPIVNFSGV GN+++ALGTDLSFDTA+GNFTKCNAGLS+T+ DLIAS+ +NDK D
Sbjct: 121 LGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVNDKLD 180

Query: 181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
            LNASYYHIVSPLTNTAVGAEL+HSFSSNENTL IGTQHALDPLTSVKARVNNYG+ASAL
Sbjct: 181 ILNASYYHIVSPLTNTAVGAELSHSFSSNENTLNIGTQHALDPLTSVKARVNNYGKASAL 240

Query: 241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
           IQHEWRPKS+ TISGEVDT AIEKSAK+GLAL LKP
Sbjct: 241 IQHEWRPKSIVTISGEVDTSAIEKSAKLGLALVLKP 276

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2100252	276	VDAC1 "voltage dependent anion	1.0	1.0	0.710	3.3e-102
TAIR|locus:2147820	274	VDAC3 "voltage dependent anion	0.992	1.0	0.655	4.7e-96
TAIR|locus:2174517	274	VDAC4 "voltage dependent anion	0.992	1.0	0.420	7.1e-61
TAIR|locus:2097425	226	VDAC5 "voltage dependent anion	0.818	1.0	0.329	3.1e-28
ZFIN|ZDB-GENE-030131-845	283	vdac2 "voltage-dependent anion	0.971	0.946	0.290	1.1e-21
FB|FBgn0004363	282	porin "porin" [Drosophila mela	0.971	0.950	0.273	3e-21
UNIPROTKB|F1P0E4	284	VDAC2 "Uncharacterized protein	0.971	0.943	0.287	6.3e-21
UNIPROTKB|Q9I9D1	283	VDAC2 "Uncharacterized protein	0.971	0.946	0.287	6.3e-21
UNIPROTKB|E1C2E3	283	VDAC3 "Uncharacterized protein	0.971	0.946	0.280	4.4e-20
ZFIN|ZDB-GENE-040426-954	281	zgc:56235 "zgc:56235" [Danio r	0.967	0.950	0.277	1.9e-19

TAIR|locus:2100252 VDAC1 "voltage dependent anion channel 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 196/276 (71%), Positives = 229/276 (82%)

Query:     1 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
             MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q 
Sbjct:     1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60

Query:    61 KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
             + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST 
Sbjct:    61 RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120

Query:   121 IGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
             +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD
Sbjct:   121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180

Query:   181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
              LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH+LDPLTSVKARVN+ G ASAL
Sbjct:   181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240

Query:   241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
             IQHEW+PKS FTISGEVDT++I+KSAK+GLALALKP
Sbjct:   241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2147820 VDAC3 "voltage dependent anion channel 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 181/276 (65%), Positives = 222/276 (80%)

Query:     1 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
             MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+
Sbjct:     1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60

Query:    61 KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
             KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST 
Sbjct:    61 KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120

Query:   121 IGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
             +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+
Sbjct:   121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180

Query:   181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
              LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQHALDPLT+VKARVNN G A+AL
Sbjct:   181 KLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANAL 238

Query:   241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
             IQHEWRPKS FT+SGEVD++AI+KSAK+G+ALALKP
Sbjct:   239 IQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

TAIR|locus:2174517 VDAC4 "voltage dependent anion channel 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 116/276 (42%), Positives = 177/276 (64%)

Query:     1 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQL 60
             M   P  +++IGKKA+DLL KDY  DHKFT+T  ++ G    ++G+KK + F  D+ST  
Sbjct:     1 MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60

Query:    61 KNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
             K +N   D+K+D++S++ T +T+    P  K++ SF +PD +SGK+++QY H +A +++ 
Sbjct:    61 KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120

Query:   121 IGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGD 180
             IG    P+             LG ++SFDTA+ + TK NAG+ + +  + A+L L DKG+
Sbjct:   121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180

Query:   181 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASAL 240
             +L A+Y H V+P   T+ GAEL   FS+  N+ T+G+ H++D  T VK R +N G+A  +
Sbjct:   181 SLRATYVHTVNP--TTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMV 238

Query:   241 IQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
             +Q EWRPKS  T S E D++A+  S K+GLALALKP
Sbjct:   239 VQREWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS;IMP

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2097425 VDAC5 "voltage dependent anion channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 76/231 (32%), Positives = 121/231 (52%)

Query:    46 VKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGK 105
             + KG    AD+    K+  +T D   D   ++ T  +V   A    ++ + ++    +  
Sbjct:     1 MSKGPGLFADIGKYAKDL-LTRDYSTDQKFSISTN-SVSGVALTSTALKNGVL---HAAN 55

Query:   106 VELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYT 165
             V  QY++        I    N                 T   +DT +  FTK N G+S T
Sbjct:    56 VATQYKYRNTFFDVKIDTDFNVKSLVYPMNKFVSIDHNTLTGYDTTSRTFTKYNVGVSVT 115

Query:   166 HTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT 225
               D   S+ L DKGD++ ASY + +   T +A   E+    S+NE T+T+G  +A+D LT
Sbjct:   116 KPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLT 175

Query:   226 SVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP 276
             +VKA++N+ G+  AL+QHE  PKS+ TISGE+DT+ ++K  ++GL+L+LKP
Sbjct:   176 NVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-030131-845 vdac2 "voltage-dependent anion channel 2" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 82/282 (29%), Positives = 124/282 (43%)

Query:     5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGEL--FLADVSTQLK 61
             P  Y+++GK A+D+  K Y     K  V T +++GV   +SG    +    +  + T+ K
Sbjct:     4 PPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYK 63

Query:    62 NKN--ITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
                  +T   K +T++ L T I + D+ A GLK  F +   P+  ++SGKV+  Y+ E+ 
Sbjct:    64 RSEYGLTFTEKWNTDNTLGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFV 123

Query:   116 GISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
              +   + F  A P               G  +SFDTA    T+ N  + Y   D      
Sbjct:   124 NLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTAKSKMTQNNFAVGYKTGDFQLHTN 183

Query:   175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNY 234
             +ND G     S Y  VS    TAV   L  +  SN     I  ++ LD   S+ A+VNN 
Sbjct:   184 VND-GSEFGGSIYQKVSDKLETAVN--LAWTAGSNSTRFGIAAKYQLDKDASISAKVNNT 240

Query:   235 GRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                        RP    T+S  VD ++I     K+GL L L+
Sbjct:   241 SLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELE 282

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0031101 "fin regeneration" evidence=IEP

FB|FBgn0004363 porin "porin" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 77/282 (27%), Positives = 129/282 (45%)

Query:     5 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSG---VKKGELFLA-DVSTQ 59
             P  YS++GK+ARD+  K Y     K  + T TS+G+   ++G    + G++F + +   +
Sbjct:     3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYK 62

Query:    60 LKNKNITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVPDQ--RSGKVELQYQHEYA 115
             +K+  +T   K +T++ LFT + V D+   GLK S+     P    ++GK ++ Y HE  
Sbjct:    63 VKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENV 122

Query:   116 GISTGIGFTAN-PIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
                + +      P+              G   +FDT     T  N  L YT  D +    
Sbjct:   123 KADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTA 182

Query:   175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNY 234
             +ND G   + S +   S   +  VG +L+ +  ++     IG ++ LD   SV+A+VNN 
Sbjct:   183 VND-GQEFSGSIFQRTSDKLD--VGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNA 239

Query:   235 GRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
              +     Q + R     T+S  VD +       KIG+ L L+
Sbjct:   240 SQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLELE 281

GO:0005741 "mitochondrial outer membrane" evidence=ISS;NAS

GO:0008308 "voltage-gated anion channel activity" evidence=ISS;IDA

GO:0006839 "mitochondrial transport" evidence=ISS

GO:0016006 "Nebenkern" evidence=IDA

GO:0006811 "ion transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0007602 "phototransduction" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0030382 "sperm mitochondrion organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

UNIPROTKB|F1P0E4 VDAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 81/282 (28%), Positives = 124/282 (43%)

Query:     5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
             P  Y+++GK ARD+  K Y     K  V T +++GV  T+SG    +    + S + K K
Sbjct:     5 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYK 64

Query:    64 ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
                  +T   K +T++ L T I + D+ A GLK  F +   P+  ++SGK++  Y+ E  
Sbjct:    65 WAEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECL 124

Query:   116 GISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
              +   + F  A P               G  ++FD+A    T+ N  + Y   D      
Sbjct:   125 NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTN 184

Query:   175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNY 234
             +ND G     S Y  VS    TAV   L  +  SN     I  ++ LD   S+ A+VNN 
Sbjct:   185 VND-GSEFGGSIYQKVSDNLETAVN--LAWTAGSNSTRFGIAAKYKLDSTASISAKVNNS 241

Query:   235 GRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                        RP    T+S  +D ++I     K+GL L L+
Sbjct:   242 SLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLGLELE 283

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|Q9I9D1 VDAC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 81/282 (28%), Positives = 124/282 (43%)

Query:     5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
             P  Y+++GK ARD+  K Y     K  V T +++GV  T+SG    +    + S + K K
Sbjct:     4 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYK 63

Query:    64 ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
                  +T   K +T++ L T I + D+ A GLK  F +   P+  ++SGK++  Y+ E  
Sbjct:    64 WAEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECL 123

Query:   116 GISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
              +   + F  A P               G  ++FD+A    T+ N  + Y   D      
Sbjct:   124 NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTN 183

Query:   175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNY 234
             +ND G     S Y  VS    TAV   L  +  SN     I  ++ LD   S+ A+VNN 
Sbjct:   184 VND-GSEFGGSIYQKVSDNLETAVN--LAWTAGSNSTRFGIAAKYKLDSTASISAKVNNS 240

Query:   235 GRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                        RP    T+S  +D ++I     K+GL L L+
Sbjct:   241 SLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLGLELE 282

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032272 "negative regulation of protein polymerization" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|E1C2E3 VDAC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 79/282 (28%), Positives = 129/282 (45%)

Query:     5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGEL--FLADVSTQLK 61
             P  YS++GK ARD+  K Y     K  + T +S+GV  T++G    +    L ++ T+ K
Sbjct:     4 PPSYSDLGKAARDVFNKGYGFGMVKLELKTKSSSGVEFTATGSSNTDTGKALGNLETKYK 63

Query:    62 NKN--ITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVPD--QRSGKVELQYQHEYA 115
              K+  +T   K +T++ L T +++ D+ A GLK ++ +  VP+  ++SGK++  Y+ +Y 
Sbjct:    64 IKDYGLTFIQKWNTDNTLGTEVSMEDQLAEGLKVALDTIFVPNTGKKSGKLKTSYRRDYV 123

Query:   116 GISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
              +   I    + P               G  ++FDTA    ++ N  L Y   D      
Sbjct:   124 NLGCNIDIDLSGPTIYGWAVLGYEGWLAGYQMAFDTAKSKLSQNNFALGYKAGDFQLHTN 183

Query:   175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNY 234
             +ND G     S Y  V+    T+V   L  +  SN     I  ++ LD  TS+ A+VNN 
Sbjct:   184 VND-GTEFGGSIYQKVNNKVETSVN--LAWTAGSNNTRFGIAAKYQLDEKTSIGAKVNNA 240

Query:   235 GRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                        RP    T+SG +D +       K+GL   L+
Sbjct:   241 SLIGIGYTLALRPGVKLTLSGLIDGKNFSAGGHKVGLGFELE 282

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0001662 "behavioral fear response" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0007612 "learning" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

ZFIN|ZDB-GENE-040426-954 zgc:56235 "zgc:56235" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 78/281 (27%), Positives = 125/281 (44%)

Query:     5 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLA----DVSTQ 59
             P  YS++GK A+D+  K Y     K  + T +  GV   +SG    +   A    +   +
Sbjct:     4 PPAYSDLGKSAKDIFSKGYGFGIVKLDLKTKSQNGVEFNTSGSTNTDTGKAAGSLETKYK 63

Query:    60 LKNKNITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVPD--QRSGKVELQYQHEYA 115
             LK+  ++ + K +T++ L T ++V D+ A GLK ++ +  VP+  ++SGK++  Y+ E+ 
Sbjct:    64 LKDLGLSFNQKWNTDNMLTTEVSVEDQLAEGLKVALDTSFVPNTGKKSGKLKTSYKREFV 123

Query:   116 GISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTL 175
              +S  + F   P+             LG  ++FDTA     + N  L Y   D      +
Sbjct:   124 NVSCDLDFEG-PVVHSAAVLGYEGWLLGYLVAFDTAKSKLVQNNFALGYKTGDFQLHTNV 182

Query:   176 NDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYG 235
             ND G     S Y  VS    TAV   L  +  SN     +  ++ LD   S+ A+VNN  
Sbjct:   183 ND-GAEFGGSVYQKVSDQLETAV--TLAWTAGSNNTRFGVAAKYQLDKDASLSAKVNNAS 239

Query:   236 RASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                       RP    T+S  VD +       K+GL   L+
Sbjct:   240 LIGIGYTQSLRPGVKLTLSALVDGKNFNTGGHKVGLGFELE 280

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46274	VDAC1_WHEAT	No assigned EC number	0.6861	0.9855	0.9890	N/A	no
P42057	VDAC_MAIZE	No assigned EC number	0.6086	0.9963	0.9927	N/A	no
P42056	VDAC2_SOLTU	No assigned EC number	0.8695	1.0	1.0	N/A	no
P42055	VDAC1_SOLTU	No assigned EC number	0.7862	1.0	1.0	N/A	no
P42054	VDAC_PEA	No assigned EC number	0.7391	1.0	1.0	N/A	no
Q6K548	VDAC1_ORYSJ	No assigned EC number	0.6959	0.9855	0.9927	yes	no
Q9SRH5	VDAC1_ARATH	No assigned EC number	0.7391	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	1e-98
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	4e-92
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	7e-14
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	4e-13

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  289 bits (742), Expect = 1e-98
 Identities = 126/274 (45%), Positives = 165/274 (60%), Gaps = 10/274 (3%)

Query: 4   GPGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKK--GELFLADVSTQL 60
            PG Y +IGK+ARDLL KDY  D  K  VTT +  GVA T SG K   G L   D   + 
Sbjct: 1   NPGTYEDIGKEARDLLNKDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGGLSSGDFEAKY 60

Query: 61  KNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSF-IVPDQ--RSGKVELQYQHEYAG 116
           K+K +T  +K DT+++L T  TV++  APGLK   S  +VP    +S K+EL+Y+ +   
Sbjct: 61  KDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKKSAKLELEYKGDDFT 120

Query: 117 ISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLN 176
            S  +G    PIV  S + G   +ALG +  +DTA+G  TK NA L Y   D IASLTLN
Sbjct: 121 ASLKVGLLKGPIVVGSALQGVTGLALGAEAVYDTASGKLTKYNAALGYAARDYIASLTLN 180

Query: 177 DKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGR 236
           +KGD L ASYYH VS      VGAELT +FSSNE T T+G ++ LDP T+VKA+V++ G+
Sbjct: 181 NKGDVLTASYYHKVSD--KLEVGAELTWNFSSNETTTTVGYKYDLDPSTTVKAKVDSNGK 238

Query: 237 ASALIQHEWRPKSLFTISGEVDTR-AIEKSAKIG 269
              L++   RP    T+S EVD +  IE + K G
Sbjct: 239 VGLLLEKRLRPGVTLTLSAEVDHKKLIEGAHKFG 272

Length = 272

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score =  273 bits (700), Expect = 4e-92
 Identities = 109/279 (39%), Positives = 150/279 (53%), Gaps = 11/279 (3%)

Query: 5   PGLYSEIGKKARDLLYKDYQ-SDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
           P  Y +IGK A+DLL K Y     K  V T T  GV  TS+G KK +      S + K K
Sbjct: 1   PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYK 60

Query: 64  N--ITTDVKVDTNSNLFTTITVDEP-APGLKSIFSFIVP---DQRSGKVELQYQHEYAGI 117
              +T   K +T++ L T IT+++  APGLK       P    ++SGK++  Y+H+   I
Sbjct: 61  IKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPINI 120

Query: 118 STGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLND 177
           +  +     P+V  S V+G     LG ++ +DTA   FTK N  L YT+ D   SL LN+
Sbjct: 121 NADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNN 180

Query: 178 KGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRA 237
            G TL  SY+H VSP    AVGA++T    +NE T  +G Q+ALDP   VKA+VNN G+ 
Sbjct: 181 -GKTLRGSYFHKVSP--RLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQL 237

Query: 238 SALIQHEWRPKSLFTISGEVDTRA-IEKSAKIGLALALK 275
               QH+ RP    T+S   D +   +   K GL+L+LK
Sbjct: 238 GLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 64/289 (22%), Positives = 113/289 (39%), Gaps = 33/289 (11%)

Query: 5   PGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSA------GVAITSSGVKKGELFLADVST 58
           PG + E+ ++ +++   D+    +  V    S        + + SS +     F A    
Sbjct: 4   PGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVG 63

Query: 59  QLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGIS 118
               +       +D + NL   I        L+S     +  Q S     Q + +Y G  
Sbjct: 64  D--KQYPFLQGDIDNDGNLNARIIHQ-LGDRLRSKLQAQL--QDSKFNMSQLELDYRGDD 118

Query: 119 TGIGFT-ANP-IVNFSGVVG-------NNSVALGTDLSFDTATGNFTKCNAGLS----YT 165
                  ANP I+N +G+            +ALG +L +    GN     + LS    YT
Sbjct: 119 FTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGN---GISVLSYAARYT 175

Query: 166 HTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT 225
             + IAS  L  +G  L+ SYY  +S      +G EL  +  + E+T T+G Q+     +
Sbjct: 176 AGNWIASGQLGAQG-GLHLSYYRKLSD--KLQLGVELELNLRTRESTATLGYQYDF-RQS 231

Query: 226 SVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 274
             +  +++ G+ SA+++          +SGE++        K G  L +
Sbjct: 232 RFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHVK--NDYKFGFGLTI 278

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 67.3 bits (164), Expect = 4e-13
 Identities = 71/275 (25%), Positives = 114/275 (41%), Gaps = 17/275 (6%)

Query: 8   YSEIGKKARDLLYKDYQSDHKFTVTT-----YTSAGVAITSSGVKKGELFLADVST-QLK 61
           Y+E+GK ARDL  K Y    K  V T     +TS+G A T +     ++  +  +  +  
Sbjct: 2   YAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWS 61

Query: 62  NKNITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTG 120
              +T   K +T++ L   ITV D+ + GLKS F        +GK   + +  Y  I+ G
Sbjct: 62  PYGLTFTEKWNTDNTLGLEITVEDQLSRGLKSTFD-SSFSPNTGKKNAKIKTGYKRINLG 120

Query: 121 IGFT---ANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTH--TDLIASLTL 175
                  A P++  + V+G      G  + F+T +   T+ N  + Y     +  A   +
Sbjct: 121 CDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRV-TQSNFAVGYKTDYNEFQAHTNV 179

Query: 176 NDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYG 235
           ND G     S YH V+      VG  L  +  ++     I  ++ +DP     A VNN  
Sbjct: 180 ND-GTEFGGSIYHKVN--DKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSS 236

Query: 236 RASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGL 270
                     +P    T+S  +D +A      +GL
Sbjct: 237 LVGLGYTQTLKPGIKLTLSALLDHKAGGHKLGLGL 271

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	100.0
KOG3126	281	consensus Porin/voltage-dependent anion-selective	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	100.0
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	99.72
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.29
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	98.94
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	98.9
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.41
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.23
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	97.17
KOG3296	308	consensus Translocase of outer mitochondrial membr	95.02
PF10082	381	DUF2320: Uncharacterized protein conserved in bact	93.57
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	93.19
PRK10993	314	outer membrane protease; Reviewed	87.66
PRK10716	435	long-chain fatty acid outer membrane transporter;	84.91
PF11383	319	DUF3187: Protein of unknown function (DUF3187); In	84.23
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	84.03
COG2067	440	FadL Long-chain fatty acid transport protein [Lipi	81.73
cd00342	329	gram_neg_porins Porins form aqueous channels for t	80.79

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=100.00  E-value=4.6e-61  Score=425.61  Aligned_cols=268  Identities=40%  Similarity=0.601  Sum_probs=255.7

Q ss_pred             CCcccccccccccccccCCCCc-eeEEEEEecCCCcEEEEEEEecC--ceeEEEEEEEEeecCeEEEEEEcCCCcEEEEE
Q 023854            5 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKG--ELFLADVSTQLKNKNITTDVKVDTNSNLFTTI   81 (276)
Q Consensus         5 P~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~e~~~~~~~~~~~~~~~~~~~l~~~~   81 (276)
                      ||+|.||+|.|||||+|||+|+ |+|+|++++++|++|++++...+  +++.|.+|++|+.++++++++|+++|++.+++
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v   80 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI   80 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence            8999999999999999999965 99999999999999999999876  69999999999999999999999999999999


Q ss_pred             EEcC-CCCCceEEEEEEcc---CCCCceEEEEEeecceeeeEEEecCCCCeEEEEEEEccCceEEEEEEEEEcCCCccee
Q 023854           82 TVDE-PAPGLKSIFSFIVP---DQRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTK  157 (276)
Q Consensus        82 ~~~~-~~~glk~~~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~~~~~~~~G~e~~y~~~~~~~~~  157 (276)
                      ++++ ++||+|+.+++.+|   +.++++++++|+|+++++++++++..+|.++.++++++++|++|+|+.||..++++++
T Consensus        81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~  160 (276)
T cd07306          81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTK  160 (276)
T ss_pred             EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEee
Confidence            9999 66999999999975   3689999999999999999999998789999999999999999999999999888999


Q ss_pred             eEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEEcCCceE
Q 023854          158 CNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRA  237 (276)
Q Consensus       158 ~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakvds~g~v  237 (276)
                      |+++++|+.+||++++++.+ ++.+.+|||||++++  +++|+|+.|++..++++++||+||.+++++++|||||++|.+
T Consensus       161 ~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~--l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v  237 (276)
T cd07306         161 YNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPR--LAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQL  237 (276)
T ss_pred             EEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCC--eEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceE
Confidence            99999999999999999985 789999999999999  899999999998899999999999998889999999999999


Q ss_pred             EEEEEEEecCCeEEEEEEEEeccccC-CCCeeEEEEEEc
Q 023854          238 SALIQHEWRPKSLFTISGEVDTRAIE-KSAKIGLALALK  275 (276)
Q Consensus       238 ~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~  275 (276)
                      +++|+++|+|++++++|+++|++++. +.||||++|+|+
T Consensus       238 ~~~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~  276 (276)
T cd07306         238 GLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK  276 (276)
T ss_pred             EEEEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence            99999999999999999999999884 799999999986

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-60  Score=409.02  Aligned_cols=272  Identities=39%  Similarity=0.523  Sum_probs=256.7

Q ss_pred             CCCCCcccccccccccccccCCCCc-eeEEEEEecCCCcEEEEEEEecC--ceeEEEEEEEEeec--CeEEEEEEcCCCc
Q 023854            2 VKGPGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKG--ELFLADVSTQLKNK--NITTDVKVDTNSN   76 (276)
Q Consensus         2 ~~~P~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~e~~~~~~--~~~~~~~~~~~~~   76 (276)
                      +|.||+|.||||.|||||+|||+++ |++++++++.+|++|++++....  +++.|++|++|+.+  |++++++|+|+++
T Consensus         1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~   80 (281)
T KOG3126|consen    1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNT   80 (281)
T ss_pred             CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCc
Confidence            4899999999999999999999998 89999999999999999998654  59999999999988  8999999999999


Q ss_pred             EEEEEEEcC-CCCCceEEEEEEccC---CCCceEEEEEeecceeeeEEEecCCCCeEEEEEEEccCceEEEEEEEEEcCC
Q 023854           77 LFTTITVDE-PAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTAT  152 (276)
Q Consensus        77 l~~~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~~~~~~~~G~e~~y~~~~  152 (276)
                      |.++|++++ ++||+|+.+..++|+   ++++|++++|.|+.+++.+...+.++|.+.+++|+++++|++|+|+.||...
T Consensus        81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~  160 (281)
T KOG3126|consen   81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTAS  160 (281)
T ss_pred             cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccC
Confidence            999999977 999999999999765   7899999999999999988643457999999999999999999999999999


Q ss_pred             CcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEEc
Q 023854          153 GNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVN  232 (276)
Q Consensus       153 ~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakvd  232 (276)
                      +.+++|+++++|.++++++++.++ +++.+.+|+|||+++.  +++++++.|.....+++++||.||.+|+.++|||||+
T Consensus       161 ~~~t~~n~~lgy~~~d~~l~~~~n-n~~~~~~s~yq~v~~~--~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVn  237 (281)
T KOG3126|consen  161 GKLTKYNAALGYTTEDFTLHLNLN-NGTEFLASIYQRVNEK--LETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVN  237 (281)
T ss_pred             CcEeeEEEEEEeecCCcEEEEEec-ccchhhhhhhhhhcch--heeeeeEEEeecCCccEEEEEEEeccCCCceeeeeec
Confidence            999999999999999999999997 5679999999999999  8999999999988899999999999999999999999


Q ss_pred             CCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEEcC
Q 023854          233 NYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALKP  276 (276)
Q Consensus       233 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~~  276 (276)
                      ++|+++++|+|+|+|++++++|+++|.++++..||||++|+|+|
T Consensus       238 n~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~~  281 (281)
T KOG3126|consen  238 NAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALKP  281 (281)
T ss_pred             CCceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeecC
Confidence            99999999999999999999999999999955599999999997

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=3.8e-52  Score=367.57  Aligned_cols=259  Identities=27%  Similarity=0.392  Sum_probs=231.5

Q ss_pred             cccccccccccccccCCCCceeEEEEEecCCCcEEEEEEEec------CceeEEEEEEEEeec--CeEEEEEEcCCCcEE
Q 023854            7 LYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKK------GELFLADVSTQLKNK--NITTDVKVDTNSNLF   78 (276)
Q Consensus         7 ~f~dl~K~akdll~k~y~~~~~l~~~~~~~~g~~f~~~~~~~------~~~~~g~~e~~~~~~--~~~~~~~~~~~~~l~   78 (276)
                      +|+||+|+|||||++||++++|++|++.+++  +|++++...      ...+.+.++++|.+.  +++++.+|++++++.
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~   78 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLG   78 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcce
Confidence            5899999999999999999999999999776  688888753      347888999988653  799999999999999


Q ss_pred             EEEEEcC-CCCCceEEEEEEccC---CCCceEEEEEeecceeeeEEEecCCCCeEEEEEEEccCceEEEEEEEEEcCCCc
Q 023854           79 TTITVDE-PAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGN  154 (276)
Q Consensus        79 ~~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~~~~~~~~G~e~~y~~~~~~  154 (276)
                      +++++.+ +.||+|+++++++++   .+.++++.+|+++.+.++..++. ++|.+..+++.++++|++|+|+.||+++ .
T Consensus        79 ~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-~  156 (274)
T cd07303          79 LEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-R  156 (274)
T ss_pred             EEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-c
Confidence            9999988 899999999998732   35666777777776665555543 5899999999999999999999999986 5


Q ss_pred             ceeeEeEEEEEe--CCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEEc
Q 023854          155 FTKCNAGLSYTH--TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVN  232 (276)
Q Consensus       155 ~~~~~~~~~y~~--~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakvd  232 (276)
                      .++++++++|..  +||++++++.+ ++.+.+|||||++|+  +++|+|++|+.++++++++||+||.+++++++|||||
T Consensus       157 ~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~--~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakid  233 (274)
T cd07303         157 VTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDK--LEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVN  233 (274)
T ss_pred             ccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCc--eEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEEC
Confidence            689999999999  89999999975 789999999999999  9999999999888999999999999988899999999


Q ss_pred             CCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEE
Q 023854          233 NYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL  274 (276)
Q Consensus       233 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~  274 (276)
                      ++|.|+++||++|+|+++|++|+++|++  +++||||+||+|
T Consensus       234 s~g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~  273 (274)
T cd07303         234 NSSLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF  273 (274)
T ss_pred             CCceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence            9999999999999999999999999996  789999999987

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=2.2e-47  Score=337.36  Aligned_cols=260  Identities=35%  Similarity=0.467  Sum_probs=228.2

Q ss_pred             CCCcccccccccccccccCCCCc-eeEEEEEecCCCcEEEEEEEec--Cc-eeEEEEEEEEeecCeEEEEEEcCCCcEEE
Q 023854            4 GPGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKK--GE-LFLADVSTQLKNKNITTDVKVDTNSNLFT   79 (276)
Q Consensus         4 ~P~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~--~~-~~~g~~e~~~~~~~~~~~~~~~~~~~l~~   79 (276)
                      +||.|+||+|+|||||+++|+|+ ++|+|++++++++.|++++...  .+ .+.+.++++|.  +..++..|+.++.+.+
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~   78 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK--GPKLTVKGDTDNDGNL   78 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE--CEEEEEEEETTTEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe--CceeeEEEEeCCcccE
Confidence            79999999999999999999987 9999999999999999999864  44 79999999998  6666677777777777


Q ss_pred             EEEEcC-CCCCceEEEEEEccC---CCCceEEEEEeecceeeeEEEecCCCCeEEEEEEEc-cCceEEEEEEEEEcCCCc
Q 023854           80 TITVDE-PAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVG-NNSVALGTDLSFDTATGN  154 (276)
Q Consensus        80 ~~~~~~-~~~glk~~~~~~~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~~-~~~~~~G~e~~y~~~~~~  154 (276)
                      ++++.+ +.|++++++.+++++   .+..+++++|+++.+++.++++...+|.+.++.+.+ .|+|++|+|+.||.....
T Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~  158 (273)
T PF01459_consen   79 EASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGK  158 (273)
T ss_dssp             EEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTC
T ss_pred             EEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCC
Confidence            777777 899999999998643   268899999999999999999875589999999885 569999999999999888


Q ss_pred             ceeeEeEEEEEeC----CeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEE
Q 023854          155 FTKCNAGLSYTHT----DLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKAR  230 (276)
Q Consensus       155 ~~~~~~~~~y~~~----~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kak  230 (276)
                      +.+|+++++|..+    ++++++++.++...+.+|||||++++  +++|+|+.|++..+++.++||++|.+++.++||+|
T Consensus       159 ~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~--~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~k  236 (273)
T PF01459_consen  159 SSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDK--LQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAK  236 (273)
T ss_dssp             EEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTT--EEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEE
T ss_pred             cCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccc--eeeeeeeeecccCCCceEEEEEEEEcCcccEEEEE
Confidence            9999999999888    99999999656789999999999999  99999999999999999999999999777799999


Q ss_pred             EcCCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeE
Q 023854          231 VNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIG  269 (276)
Q Consensus       231 vds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G  269 (276)
                      ||++|+|+++||++|+|++++++|+++|+++  ..||||
T Consensus       237 vds~g~v~~~~~~~l~~~~~l~ls~~~d~~~--~~~KfG  273 (273)
T PF01459_consen  237 VDSNGRVSASYEQKLNPGVTLTLSAELDHKN--NNHKFG  273 (273)
T ss_dssp             EETTSEEEEEEEEEECTTEEEEEEEEECTT---C-EEEE
T ss_pred             EcCCCEEEEEEEEecCCCcEEEEEEEEccCC--CCCCcC
Confidence            9999999999999999999999999999974  489998

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=2.1e-45  Score=325.95  Aligned_cols=262  Identities=21%  Similarity=0.315  Sum_probs=222.9

Q ss_pred             CCCCcccccccccccccccCCCCceeEEEEEecCCCcEEEEEEEe-cCc-eeEEEEEEEEeecC--eEEEEEEcCCCcEE
Q 023854            3 KGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVK-KGE-LFLADVSTQLKNKN--ITTDVKVDTNSNLF   78 (276)
Q Consensus         3 ~~P~~f~dl~K~akdll~k~y~~~~~l~~~~~~~~g~~f~~~~~~-~~~-~~~g~~e~~~~~~~--~~~~~~~~~~~~l~   78 (276)
                      ++|+.|+||+|+||||+..+|..|.|+++.....+...++.+... ... .....+.+.|..+.  +++.+++|++|+|+
T Consensus         2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~l~   81 (279)
T cd07305           2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGNLN   81 (279)
T ss_pred             cCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCcee
Confidence            689999999999999999999888999998865544444444332 222 34567777798888  99999999999999


Q ss_pred             EEEEEcCCCCCceEEEEEEccCC--CCceEEEEEeecceeeeEEEecC-CCCe-EEEEEEEc-------cCceEEEEEEE
Q 023854           79 TTITVDEPAPGLKSIFSFIVPDQ--RSGKVELQYQHEYAGISTGIGFT-ANPI-VNFSGVVG-------NNSVALGTDLS  147 (276)
Q Consensus        79 ~~~~~~~~~~glk~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~-~~p~-~~~s~v~~-------~~~~~~G~e~~  147 (276)
                      +++.++ +.+.+++++.+++++.  ...+++++|.++    ++++.++ .+|. ++.+++++       +|+|++|+|+.
T Consensus        82 ~~~~~~-~~~~~~~k~~~~~~~~~~~~~q~~~dy~g~----d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~  156 (279)
T cd07305          82 ARIIHQ-LGDRLRSKLQAQLQDSKFNMSQLELDYRGD----DFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELV  156 (279)
T ss_pred             EEEEec-cCcceEEEEEEEecCCCceeEEEEEEEcCC----ceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEE
Confidence            999999 9999999999988653  234455555555    5555555 5674 45666665       99999999999


Q ss_pred             EEc-CCCcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCe
Q 023854          148 FDT-ATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTS  226 (276)
Q Consensus       148 y~~-~~~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~  226 (276)
                      |++ ++.+++.+++++||+.++|++++++.+. ..+.+|||||++++  +++|+|+.|+..++++.+++|+||.+ ++++
T Consensus       157 ~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~-~~l~asY~~kvs~~--l~lG~el~~~~~~~es~~tvg~~y~~-~~~~  232 (279)
T cd07305         157 YQRVPGNGISVLSYAARYTAGNWIASGQLGAQ-GGLHLSYYRKLSDK--LQLGVELELNLRTRESTATLGYQYDF-RQSR  232 (279)
T ss_pred             EEEcCCCCceeEEEEEEEccCCEEEEEEEcCC-CeEEEEEEEEcccc--eEeeeeeeecccCCceeEEEEEEEEc-CCCE
Confidence            996 5678899999999999999999999865 59999999999999  99999999999999999999999999 5999


Q ss_pred             EEEEEcCCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEEc
Q 023854          227 VKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK  275 (276)
Q Consensus       227 ~Kakvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~  275 (276)
                      +||+||++|.|+++||++|+|++++++|+++|++  ++++|||+||+|.
T Consensus       233 ~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~  279 (279)
T cd07305         233 FRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG  279 (279)
T ss_pred             EEEEEcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence            9999999999999999999999999999999996  6899999999974

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=246.44  Aligned_cols=255  Identities=18%  Similarity=0.246  Sum_probs=208.6

Q ss_pred             CCCCcccccccccccccccCCCCceeEEEEE----------------ecCCCcEEEEEEEecCceeEEEEEEEEeecCeE
Q 023854            3 KGPGLYSEIGKKARDLLYKDYQSDHKFTVTT----------------YTSAGVAITSSGVKKGELFLADVSTQLKNKNIT   66 (276)
Q Consensus         3 ~~P~~f~dl~K~akdll~k~y~~~~~l~~~~----------------~~~~g~~f~~~~~~~~~~~~g~~e~~~~~~~~~   66 (276)
                      .||+++++|+++|+ ++.. +.++.+++++.                ..+.|+.|..++       .+..+..+..+.+.
T Consensus        28 ~Npgt~e~L~~~~~-~~p~-~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~~sg~~fg~ty-------~~~~q~~~~~~~~i   98 (308)
T KOG3296|consen   28 LNPGTVEELHSEAS-VDPT-LSEGVKLGVNKGLSNHFQVSPTFVLSHIAASGYRFGPTY-------VYTFQASPTEAFLI   98 (308)
T ss_pred             CCcHHHHHhhhhhc-cCce-eecceEeeecccccCceEeccceecccCccccceeccce-------eeeeccccCCCcce
Confidence            48999999999997 4321 12233444433                333444444333       23444445455688


Q ss_pred             EEEEEcCCCcEEEEEEEcCCCCCceEEEEEEccCCCCceEEEEEeecceeeeEEEecC-CCCeEEEEEEE-------ccC
Q 023854           67 TDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGVV-------GNN  138 (276)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~glk~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~p~~~~s~v~-------~~~  138 (276)
                      +.+.+|++|++.+++.++ +.++++.++..++.+  +..++.|+..++++.+.+..+. .+|.+..++++       ++|
T Consensus        99 l~G~vD~~Gslna~l~~~-l~~~Lr~K~~~q~~~--~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~  175 (308)
T KOG3296|consen   99 LRGDVDNDGSLNARLIHQ-LTDNLRSKVALQIQQ--SKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTP  175 (308)
T ss_pred             EEEecCCCCchhheeecc-cchhhHHHHHHHhcc--hhhhccccccceecccccccccccCcccccchHHHHHHHhhhcc
Confidence            999999999999999999 999998877776643  4489999999999999888876 68887666655       499


Q ss_pred             ceEEEEEEEEEc-CCCcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEE
Q 023854          139 SVALGTDLSFDT-ATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGT  217 (276)
Q Consensus       139 ~~~~G~e~~y~~-~~~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~  217 (276)
                      +|++|+|+.|.. .+......+.+.||...+|++++++..  ...+++||||..++  ++.|+|+.++..-+++..++++
T Consensus       176 ~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~--~~~~ve~~~~~~~~~~~~t~a~  251 (308)
T KOG3296|consen  176 RLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEK--LQMGVEFETNTRLQSTDVTAAY  251 (308)
T ss_pred             cccccceeEeccCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhh--hccceeEeeecccCCcceEEEE
Confidence            999999999998 455677889999999999999999974  37889999999999  8999999999988899999999


Q ss_pred             EEee-CCCCeEEEEEcCCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEEc
Q 023854          218 QHAL-DPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK  275 (276)
Q Consensus       218 ~y~l-d~~~~~Kakvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~  275 (276)
                      +|++ .+++.+|++||+||.|++.+|+||.+++++.+|+++||.  +.++|||+||++.
T Consensus       252 ~~~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~--k~~~~~G~gl~~~  308 (308)
T KOG3296|consen  252 GYDLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHV--KNDFKFGFGLTIG  308 (308)
T ss_pred             EeeccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeeccc--ccccccceeEEeC
Confidence            9998 678999999999999999999999779999999999995  8899999999874

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=99.72  E-value=1.3e-16  Score=127.42  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=108.4

Q ss_pred             CCCCccccccccc-ccccccCCCCc-eeEEEEEecCCCcEEEEEEEe---cCceeEEEEEEEEeecCeEEEEEEcCCCcE
Q 023854            3 KGPGLYSEIGKKA-RDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVK---KGELFLADVSTQLKNKNITTDVKVDTNSNL   77 (276)
Q Consensus         3 ~~P~~f~dl~K~a-kdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~---~~~~~~g~~e~~~~~~~~~~~~~~~~~~~l   77 (276)
                      .||++|++|+|+| ||++.+.|.|+ .|+++.....-+..|.++++-   ........+.+.|..+.+.+.+++|++|+|
T Consensus         2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l   81 (161)
T TIGR00989         2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV   81 (161)
T ss_pred             cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence            5899999999999 99999999885 899998874335678888752   222233455555776778999999999999


Q ss_pred             EEEEEEcCCCCCceEEEEEEccC--CCCceEEEEEeecceeeeEEEecC-CCCeE-E--EEEEE-------ccCceEEEE
Q 023854           78 FTTITVDEPAPGLKSIFSFIVPD--QRSGKVELQYQHEYAGISTGIGFT-ANPIV-N--FSGVV-------GNNSVALGT  144 (276)
Q Consensus        78 ~~~~~~~~~~~glk~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~-~~p~~-~--~s~v~-------~~~~~~~G~  144 (276)
                      ++++.++ |.+.++.++++++.+  ....+++.+|+.+++    ++.++ .+|.+ +  +++++       +||++++|+
T Consensus        82 ~ar~~~~-~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~G~Df----t~~lk~~Np~~~~~~~sGi~v~sylQsVTp~LaLG~  156 (161)
T TIGR00989        82 STRLNYR-WGDRTISKVQFQISGGQPDMCQFEHDHLGDDF----SASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGL  156 (161)
T ss_pred             EEEEEEe-eCcceeEEEEEEecCCCCceEEEEEEecCCeE----EEEEEEcCcccccccceEEEEEeeeehhCcceeeee
Confidence            9999999 999999999888643  245567777777755    44444 47774 3  25554       499999999


Q ss_pred             EEEEE
Q 023854          145 DLSFD  149 (276)
Q Consensus       145 e~~y~  149 (276)
                      |+.|+
T Consensus       157 E~~yq  161 (161)
T TIGR00989       157 EALWQ  161 (161)
T ss_pred             eeEeC
Confidence            99985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.29  E-value=5.3e-09  Score=92.98  Aligned_cols=167  Identities=16%  Similarity=0.137  Sum_probs=121.3

Q ss_pred             CCCCceEEEEEEccC---CCCceEEEEEeecc--eeeeEEEecCCCCeEEEEEEE-ccCceEEEEEEEEEcCCCcceeeE
Q 023854           86 PAPGLKSIFSFIVPD---QRSGKVELQYQHEY--AGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCN  159 (276)
Q Consensus        86 ~~~glk~~~~~~~~~---~~~~~~~~~y~~~~--~~~~~~~~~~~~p~~~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~  159 (276)
                      +.|.+.+.=.+.+..   ....++.+.|..+.  .-+..+++-.  -.+++.... -.+++..-..+.  ........+.
T Consensus        34 ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~--g~l~~~~~~~~~~~~~~k~~~~--~~~~~~~~~q  109 (279)
T cd07305          34 LSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDND--GNLNARIIHQLGDRLRSKLQAQ--LQDSKFNMSQ  109 (279)
T ss_pred             cCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCC--CceeEEEEeccCcceEEEEEEE--ecCCCceeEE
Confidence            666665555444322   23567888888887  5556655532  223333332 234554444444  4434567788


Q ss_pred             eEEEEEeCCeEEEEEEcCCC-----CeEEEEEEEEeCCCcceeEEEEEEEe--ecCCceEEEEEEEEeeCCCCeEEEEEc
Q 023854          160 AGLSYTHTDLIASLTLNDKG-----DTLNASYYHIVSPLTNTAVGAELTHS--FSSNENTLTIGTQHALDPLTSVKARVN  232 (276)
Q Consensus       160 ~~~~y~~~~~~~s~~~~~~~-----~~~~~Sy~~kv~~~~~~~~g~e~~~~--~~~~~~~~~vG~~y~ld~~~~~Kakvd  232 (276)
                      +...|..++|++++++.+..     ..+.++|.|+++++  +++|+|+.|.  ...+.+..++|++|.- ++.++.+.++
T Consensus       110 ~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~--l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~s~~l~  186 (279)
T cd07305         110 LELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK--LALGGELVYQRVPGNGISVLSYAARYTA-GNWIASGQLG  186 (279)
T ss_pred             EEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc--EEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEEEEEEc
Confidence            99999999999999965431     48899999999999  8999999999  5678889999999999 7888999999


Q ss_pred             CCceEEEEEEEEecCCeEEEEEEEEec
Q 023854          233 NYGRASALIQHEWRPKSLFTISGEVDT  259 (276)
Q Consensus       233 s~g~v~~~~~~~l~~~~~l~ls~~~d~  259 (276)
                      +.+.+.++|-|+++|++.+..-.+.+.
T Consensus       187 ~~~~l~asY~~kvs~~l~lG~el~~~~  213 (279)
T cd07305         187 AQGGLHLSYYRKLSDKLQLGVELELNL  213 (279)
T ss_pred             CCCeEEEEEEEEcccceEeeeeeeecc
Confidence            999999999999999755555544444

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=98.94  E-value=1.4e-06  Score=77.44  Aligned_cols=172  Identities=15%  Similarity=0.176  Sum_probs=113.2

Q ss_pred             CCcEEEEEEEec--CceeEEEEEEEEeecCeEEEEEEcCC--CcEEEEEEEcCCCCCceEEEEEEc--cCC--CCceEEE
Q 023854           37 AGVAITSSGVKK--GELFLADVSTQLKNKNITTDVKVDTN--SNLFTTITVDEPAPGLKSIFSFIV--PDQ--RSGKVEL  108 (276)
Q Consensus        37 ~g~~f~~~~~~~--~~~~~g~~e~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~glk~~~~~~~--~~~--~~~~~~~  108 (276)
                      .|++....+.-.  .+...+.++..|..+.+.+...++-.  -.+...+.+.  .+++-+-.++.+  ...  ....+.+
T Consensus        88 ~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~  165 (276)
T cd07306          88 PGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFAL  165 (276)
T ss_pred             CcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEE
Confidence            455555554322  35677888888887766555554443  3344444444  366666555553  111  2345778


Q ss_pred             EEeecceeeeEEEecCCCCeEEEEEEE-ccCceEEEEEEEEEcCCCcceeeEeEEEEEeC-CeEEEEEEcCCCCeEEEEE
Q 023854          109 QYQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT-DLIASLTLNDKGDTLNASY  186 (276)
Q Consensus       109 ~y~~~~~~~~~~~~~~~~p~~~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~-~~~~s~~~~~~~~~~~~Sy  186 (276)
                      .|.++.+.+...+.  ....+.+|..- ..+++++|+|+.|+...+. ..+++|++|.-+ ++.+.+++++++ .+.++|
T Consensus       166 ~Y~~~d~~~s~~l~--~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~-~~~~vg~~y~l~~~~~vkakv~~~g-~v~~~y  241 (276)
T cd07306         166 GYTNGDFELSLKLN--NGKTLRGSYFHKVSPRLAVGAKVTWYSGTNE-TTFAVGGQYALDPDALVKAKVNNDG-QLGLSY  241 (276)
T ss_pred             EEecCCeEEEEEEC--CCCEEEEEEEEEcCCCeEEEEEEEEecCCCC-cEEEEEEEEEcCCCCEEEEEECCCc-eEEEEE
Confidence            89888776555543  23456777554 6899999999999986544 689999999866 499999998776 999999


Q ss_pred             EEEeCCCcceeEEEEEEEeecC---CceEEEEE
Q 023854          187 YHIVSPLTNTAVGAELTHSFSS---NENTLTIG  216 (276)
Q Consensus       187 ~~kv~~~~~~~~g~e~~~~~~~---~~~~~~vG  216 (276)
                      .|+++|+  +.+......+...   +...+.+|
T Consensus       242 ~~kl~~~--v~~tls~~~d~~~~~~~~~K~G~~  272 (276)
T cd07306         242 QHKLRPG--VTLTLSAGFDAKNLNQGGHKFGLS  272 (276)
T ss_pred             EEEcCCC--cEEEEEEEeeccCcCCCCCeEEEE
Confidence            9999999  5555554444333   44445444

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=98.90  E-value=7.5e-06  Score=72.13  Aligned_cols=162  Identities=18%  Similarity=0.208  Sum_probs=111.0

Q ss_pred             CceEEEEEeecceeeeEEEecCCCCeEEEEEEE---ccCceEEEEEEEEEcCCCcceeeEeEEEEEeCCeEEEEEEcC-C
Q 023854          103 SGKVELQYQHEYAGISTGIGFTANPIVNFSGVV---GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLND-K  178 (276)
Q Consensus       103 ~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~---~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~~~~~-~  178 (276)
                      ...++..|.....  ....++  .+.....+.+   ..+++.+=.+..+.... ....+.+.+.|..+++.+.+.+.. .
T Consensus        54 ~~~~~~~~~~~~~--~~~~~~--d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~  128 (273)
T PF01459_consen   54 SYSFGAKYKGPKL--TVKGDT--DNDGNLEASVRNKLSPGLKLKLSAQLSPGS-GKKSAQLEADYKGDDFNATFKVDNDN  128 (273)
T ss_dssp             EEEEEEEEECEEE--EEEEET--TTEEEEEEEEESSTTTTEEEEEEEEE-TTT-S-EEEEEEEEEEETTEEEEEEEEEST
T ss_pred             ceEEEEEEeCcee--eEEEEe--CCcccEEEEEecccCcceEEEEEEEEeecC-CceeeEEEEEEecCCEEEEEEEcccC
Confidence            3456666663322  222233  4444444333   36776666666654432 236788899999999999999874 1


Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceE-----EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEEecCCeEEE
Q 023854          179 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-----LTIGTQHALDPLTSVKARV-NNYGRASALIQHEWRPKSLFT  252 (276)
Q Consensus       179 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~-----~~vG~~y~ld~~~~~Kakv-ds~g~v~~~~~~~l~~~~~l~  252 (276)
                      ...+.+||.+.+.|+  +.+|+|+.|+...++..     +.++.+|.- ++.++-+++ ++.+.+.++|-|++++.+.+.
T Consensus       129 ~~~~~~s~~~~v~~~--~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g  205 (273)
T PF01459_consen  129 NPIFNASYVQSVTPN--LALGAEATYDLSSGKSSKYNAGLSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLG  205 (273)
T ss_dssp             S-EEEEEEEEEET-T--EEEEEEEEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEE
T ss_pred             CCcEEEEEEEecccc--EEEEEEEEEecccCCcCcceEEEEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeee
Confidence            358999999999999  89999999998876665     444444443 699999999 789999999999999999988


Q ss_pred             EEEEEeccccCCCCeeEEEEEE
Q 023854          253 ISGEVDTRAIEKSAKIGLALAL  274 (276)
Q Consensus       253 ls~~~d~~~~~~~~K~G~~l~~  274 (276)
                      .-.+.+..  .....+.+|...
T Consensus       206 ~e~~~~~~--~~~~~~~vG~~~  225 (273)
T PF01459_consen  206 AELTYNLS--SRESTFTVGYQY  225 (273)
T ss_dssp             EEEEEETT--CCEEEEEEEEEE
T ss_pred             eeeeeccc--CCCceEEEEEEE
Confidence            88888874  334555555544

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.41  E-value=0.0006  Score=60.47  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=96.3

Q ss_pred             cCceEEEEEEEEEcCCCcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCC--ceEEE
Q 023854          137 NNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSN--ENTLT  214 (276)
Q Consensus       137 ~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~--~~~~~  214 (276)
                      .+++..=.++.++..++ .....+-..|..+++.+.+.+...+ -+..++.+-+.++  +.+|+|+.|+..++  +..+.
T Consensus        88 ~~glk~~~~~~~~~~~~-~~~~q~~~~y~~~~~~~~l~~~~~g-p~v~~~~~~g~~~--~~~G~e~~yd~~~~~~~~~~~  163 (274)
T cd07303          88 SRGLKSTFDSSFSPNTG-KKNAKIKTGYKRINLGCDVDFDIAG-PLIRGALVLGYEG--WLAGYQMVFETVSRVTQSNFA  163 (274)
T ss_pred             CCCeEEEEEEEECCCCc-cEEEEEeccEEcCCeeEEEEeecCC-CEEEEEEEEeecc--eEEEEEEEEeccccccccceE
Confidence            68888888888865332 2445556689999999999996444 6667888999999  89999999997543  33455


Q ss_pred             EEEEEeeCCCCeEEEEEcCCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEEc
Q 023854          215 IGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK  275 (276)
Q Consensus       215 vG~~y~ld~~~~~Kakvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~~  275 (276)
                      +|+.-.. ++..+-+++++-+.+.++|-||++|.+.+.+-.+.+.+  ..+..+.+|...+
T Consensus       164 ~~y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~y~  221 (274)
T cd07303         164 VGYKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAKYQ  221 (274)
T ss_pred             EEEEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEEEe
Confidence            5543333 56677888988899999999999998877777666653  3455666655443

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.093  Score=46.43  Aligned_cols=97  Identities=16%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             ceEEEEEeecceeeeEEEecCCCCeEEEEEEE-ccCceEEEEEEEEEcCCCcceeeEeEEEEEe-CCeEEEEEEcCCCCe
Q 023854          104 GKVELQYQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTH-TDLIASLTLNDKGDT  181 (276)
Q Consensus       104 ~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~-~~~~~s~~~~~~~~~  181 (276)
                      -.+.+.|..+.+.+...++  ..-.+..|... ....+..|.++.|..... -+.+++|.+|.- ++..+.+++++.+ .
T Consensus       166 ~n~~lgy~~~d~~l~~~~n--n~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn~g-~  241 (281)
T KOG3126|consen  166 YNAALGYTTEDFTLHLNLN--NGTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNNAG-L  241 (281)
T ss_pred             EEEEEEeecCCcEEEEEec--ccchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecCCc-e
Confidence            3466777777665444442  11223333222 355589999999998755 578999999975 5778999998654 9


Q ss_pred             EEEEEEEEeCCCcceeEEEEEEE
Q 023854          182 LNASYYHIVSPLTNTAVGAELTH  204 (276)
Q Consensus       182 ~~~Sy~~kv~~~~~~~~g~e~~~  204 (276)
                      +.+.|-|++.|...+.+++++..
T Consensus       242 ~gl~yq~~lrp~i~~t~s~~~d~  264 (281)
T KOG3126|consen  242 AGLGYQQTLRPGIKVTLSAEFDG  264 (281)
T ss_pred             eeEEEEEecCCCcEEEEEEEEec
Confidence            99999999999944444444443

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=97.17  E-value=0.013  Score=47.35  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             cCceEEEEEEEEEcCCCcceeeEeEEEEEeCCeEEEEEEcCCC-------CeEEEEEEEEeCCCcceeEEEEEEEe
Q 023854          137 NNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKG-------DTLNASYYHIVSPLTNTAVGAELTHS  205 (276)
Q Consensus       137 ~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~~~~~~~-------~~~~~Sy~~kv~~~~~~~~g~e~~~~  205 (276)
                      .+++..=.++...  .++...+-+-.-|+..||++++++.+..       ..+.+||.|.|.|+  +++|.|+.|.
T Consensus        90 ~~~~~~K~~~Q~~--~~~~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~--LaLG~E~~yq  161 (161)
T TIGR00989        90 GDRTISKVQFQIS--GGQPDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPR--LGLGLEALWQ  161 (161)
T ss_pred             CcceeEEEEEEec--CCCCceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcc--eeeeeeeEeC
Confidence            4444444333332  2223455566899999999999987421       15689999999999  8999999984

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.02  E-value=0.015  Score=51.76  Aligned_cols=134  Identities=17%  Similarity=0.174  Sum_probs=89.8

Q ss_pred             cCceEEEEEEEEEcCC------------CcceeeEeEEEEEeCCeEEEEEEcC-C---CCeEEEEEEEEeCCCcceeEEE
Q 023854          137 NNSVALGTDLSFDTAT------------GNFTKCNAGLSYTHTDLIASLTLND-K---GDTLNASYYHIVSPLTNTAVGA  200 (276)
Q Consensus       137 ~~~~~~G~e~~y~~~~------------~~~~~~~~~~~y~~~~~~~s~~~~~-~---~~~~~~Sy~~kv~~~~~~~~g~  200 (276)
                      -..-.+.+.+.|+...            ++...+..-..|...++.+++...+ +   -..+.++|.|.+.++  +++|+
T Consensus       104 D~~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~--LsLG~  181 (308)
T KOG3296|consen  104 DNDGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR--LSLGG  181 (308)
T ss_pred             CCCCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc--ccccc
Confidence            4445667777665542            3344566667788888888877652 1   125567999999999  89999


Q ss_pred             EEEEee--cCCceEEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEEEE
Q 023854          201 ELTHSF--SSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL  274 (276)
Q Consensus       201 e~~~~~--~~~~~~~~vG~~y~ld~~~~~Kakvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l~~  274 (276)
                      |+.|..  ...+..++..+||.. .....-+-....|.- +.|-+|+.+++...+..+.|..--+...-+++++.+
T Consensus       182 El~~~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~-~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l  255 (308)
T KOG3296|consen  182 ELLYQRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLT-GTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL  255 (308)
T ss_pred             eeEeccCCCccccceeeeeeeee-cceeeEEecccccce-ehhhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence            999997  347888999999998 444444555555443 445577778888877777777411334555555544

>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function

Probab=93.57  E-value=5.9  Score=36.41  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=36.0

Q ss_pred             EEcCCceEEEEEEEEecCCeEEEEEEEEeccccC------CCCeeEEEEEEc
Q 023854          230 RVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE------KSAKIGLALALK  275 (276)
Q Consensus       230 kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~------~~~K~G~~l~~~  275 (276)
                      +-|.-..+++.++.++++.+.+.+.....-++-+      ..+.+++++.++
T Consensus       329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~  380 (381)
T PF10082_consen  329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ  380 (381)
T ss_pred             ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence            7788888999999999999999888887775321      236888888764

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=93.19  E-value=1.8  Score=37.91  Aligned_cols=66  Identities=21%  Similarity=0.361  Sum_probs=54.1

Q ss_pred             cCceEEEEEEEEEcCCCcceeeEeEEEEEe------CCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEe
Q 023854          137 NNSVALGTDLSFDTATGNFTKCNAGLSYTH------TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHS  205 (276)
Q Consensus       137 ~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~------~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~  205 (276)
                      ..+|.+|+|+-|-...+ -...+.|+||.+      ..+++++++++-...+..+|--|.++.  +++++++.++
T Consensus       189 ~~r~S~GaE~yys~~~k-s~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~--~a~~SrfdFN  260 (260)
T PF12519_consen  189 YGRFSAGAELYYSALNK-SPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPN--SAFCSRFDFN  260 (260)
T ss_pred             cceEeeccEEEEEeecc-CCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCC--ceEEeecccC
Confidence            34999999999977543 357889999965      458999999987668999999999999  8888877653

Proteins in this family are typically between 415 and 473 amino acids in length.

>PRK10993 outer membrane protease; Reviewed

Probab=87.66  E-value=21  Score=32.26  Aligned_cols=180  Identities=15%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             EEEEEcCCCcEEEEEEEcCCCCCceEEEEEE--ccCCCCce-EEEE--------EeecceeeeEEEecCCCCeEEEEE-E
Q 023854           67 TDVKVDTNSNLFTTITVDEPAPGLKSIFSFI--VPDQRSGK-VELQ--------YQHEYAGISTGIGFTANPIVNFSG-V  134 (276)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~glk~~~~~~--~~~~~~~~-~~~~--------y~~~~~~~~~~~~~~~~p~~~~s~-v  134 (276)
                      +..++++..-|++++..+ +.|.|++..+..  +.+ .+++ ..=+        |.+...+-+.+++--..-.++... .
T Consensus        63 LdW~~~n~~iik~~~~~~-~~~~lsl~a~gw~~l~s-~~G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~w~  140 (314)
T PRK10993         63 LDWKIKNAAIIKGDINWD-LLPRLSLGASGWTTLAS-GGGHMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKGWL  140 (314)
T ss_pred             eeccccCceEEEeecccc-cccceEEeeeEEEEEec-CCCccccccccCCCCCCCcceecCCCCchhhhhhcceecceee
Confidence            445555666688888888 899999888764  332 1111 1111        333333323333211122333333 3


Q ss_pred             EccCceEEEEEEEEEcCCCcceeeEeEEEEEe--C---CeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCC
Q 023854          135 VGNNSVALGTDLSFDTATGNFTKCNAGLSYTH--T---DLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSN  209 (276)
Q Consensus       135 ~~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~--~---~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~  209 (276)
                      +..++..+|.-+.|+...-  .-.+.|+.|..  .   +.+.+   -+.+ ....+|-|+..--   -+|...++...  
T Consensus       141 l~~~~yklG~~aGyqy~~~--sw~A~GG~y~Y~~~~~r~~~g~---fPd~-~~~I~Y~Q~f~~p---yiGL~g~y~~~--  209 (314)
T PRK10993        141 LQNPNYRLGVMAGYQETRF--SWTAYGGSYIYSNGGFRDDIGT---FPDG-ERGIGYKQRFKMP---YIGLTGSYRYD--  209 (314)
T ss_pred             ecCCCceeeeEeeeEEEec--eeEccCceEEcCCCCCCCCccc---cCCC-ccceeeEEEecce---eeeEEEEEEec--
Confidence            4688888999888877533  33344555543  3   22222   2443 6668999998533   45555555543  


Q ss_pred             ceEEEEEEEEee-----------CCCCeEEEEEcCCceE--EEEEEEEecCCeEEEEEEEEec
Q 023854          210 ENTLTIGTQHAL-----------DPLTSVKARVNNYGRA--SALIQHEWRPKSLFTISGEVDT  259 (276)
Q Consensus       210 ~~~~~vG~~y~l-----------d~~~~~Kakvds~g~v--~~~~~~~l~~~~~l~ls~~~d~  259 (276)
                      .-.+....+|..           -++.++|-++++.-..  .+.....+.|++++-+++....
T Consensus       210 ~~ef~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~l~~~agY~vTp~~~v~v~~~y~~  272 (314)
T PRK10993        210 DFEFGGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYSASINAGYYVTPNAKLYVEGAYNR  272 (314)
T ss_pred             cEEEeeEeecceeEeecccchhhcccccchhcccCCceeEEEEEEeEEeCCCeEEEEEEEEEE
Confidence            233333333322           1456677666665444  5667778889888888877654

>PRK10716 long-chain fatty acid outer membrane transporter; Provisional

Probab=84.91  E-value=20  Score=33.96  Aligned_cols=76  Identities=14%  Similarity=0.023  Sum_probs=48.3

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCC--CeEEEEEcCCceEEEEEEEEecCCeEEEEEEE
Q 023854          179 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPL--TSVKARVNNYGRASALIQHEWRPKSLFTISGE  256 (276)
Q Consensus       179 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~--~~~Kakvds~g~v~~~~~~~l~~~~~l~ls~~  256 (276)
                      -+.+.++..|+++|+  +.+.+.+.|..=+.=..+.+-  .. ...  ...--.-++.+.+++..++++++.++|..+..
T Consensus       286 P~~~~lg~~~~~~~~--~~l~~d~~wt~WS~~~~l~i~--~~-~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~  360 (435)
T PRK10716        286 PEMWEVSGYNRVAPQ--WAIHYSLAYTSWSQFQELKAT--SS-NGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA  360 (435)
T ss_pred             CcEEEEEeEEecCCc--EEEEEEEEEeeecccceEEEE--eC-CCcceecccccceeeeEEEeeEEEECCCCeEEEEeeE
Confidence            367789999999999  888998888643321122221  00 000  01112245667788888888888888888888


Q ss_pred             Eec
Q 023854          257 VDT  259 (276)
Q Consensus       257 ~d~  259 (276)
                      .|-
T Consensus       361 yd~  363 (435)
T PRK10716        361 FDD  363 (435)
T ss_pred             ecc
Confidence            873

>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria

Probab=84.23  E-value=32  Score=31.21  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=39.3

Q ss_pred             CceEEEEEEEEeeCCCCeEEEEEcC--------------CceEEEEEEEEecCCeEEEEEEEEeccccCCCCeeEEEE
Q 023854          209 NENTLTIGTQHALDPLTSVKARVNN--------------YGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAL  272 (276)
Q Consensus       209 ~~~~~~vG~~y~ld~~~~~Kakvds--------------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~K~G~~l  272 (276)
                      ....+.+|++|++.+...++++++.              ...+.+.|..++.++..+.++..=|..+++..+-|++.+
T Consensus       236 ~~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l  313 (319)
T PF11383_consen  236 NTWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHL  313 (319)
T ss_pred             ceEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEE
Confidence            3445666777776666666666653              244667777777777777777766664454444444443

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=84.03  E-value=37  Score=32.27  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=52.8

Q ss_pred             EEEEEE-ccCceEEEEEEEEEcCCCcceeeEeEEEEEeCCeEEEEE---EcCCCCeEEEEEEEEeCCCcceeEEEEEEEe
Q 023854          130 NFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT---LNDKGDTLNASYYHIVSPLTNTAVGAELTHS  205 (276)
Q Consensus       130 ~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~~~s~~---~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~  205 (276)
                      +.+... ..++|++.+.+.|-.= +++.+..+...  ...-.....   .. ++-.+.+.--|+++|+  +++.+-+.|+
T Consensus       289 el~~~~~~~d~w~~~~s~~wT~W-S~f~~l~~~~~--~~~~~~~~~~~~yr-D~wt~a~G~~Y~~nd~--~tlragiayD  362 (440)
T COG2067         289 ELSGQHKVADQWAIHGSVKWTDW-SSFDKLDFVFT--FGKTLFAKTEDGYR-DTWTVALGTTYKFNDQ--WTLRAGIAYD  362 (440)
T ss_pred             EEeeeeccCCCeEEEEEEEEeec-cCCceEEEEEc--CCCccccccccccc-cccEEeeeceeEcCcc--ceEeeeeeec
Confidence            444333 4888888888887432 12334443222  111111111   22 2346666777888888  5566656676


Q ss_pred             ec-------------CCceEEEEEEEEeeCCCCeEEE
Q 023854          206 FS-------------SNENTLTIGTQHALDPLTSVKA  229 (276)
Q Consensus       206 ~~-------------~~~~~~~vG~~y~ld~~~~~Ka  229 (276)
                      ..             .....+++|..|+++++..|.+
T Consensus       363 ~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~  399 (440)
T COG2067         363 QSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA  399 (440)
T ss_pred             CCCCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence            33             2334578888888887776654

>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]

Probab=81.73  E-value=30  Score=32.88  Aligned_cols=76  Identities=11%  Similarity=-0.087  Sum_probs=53.9

Q ss_pred             CeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEE---cCCceEEEEEEEEecCCeEEEEEEE
Q 023854          180 DTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARV---NNYGRASALIQHEWRPKSLFTISGE  256 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv---ds~g~v~~~~~~~l~~~~~l~ls~~  256 (276)
                      +.+..+++||++|+  +.+...+.|..=++=..+.+-..   +....+....   .+.+.+++..++++++.+++..+-.
T Consensus       286 ~~~el~~~~~~~d~--w~~~~s~~wT~WS~f~~l~~~~~---~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragia  360 (440)
T COG2067         286 ASAELSGQHKVADQ--WAIHGSVKWTDWSSFDKLDFVFT---FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIA  360 (440)
T ss_pred             cEEEEeeeeccCCC--eEEEEEEEEeeccCCceEEEEEc---CCCccccccccccccccEEeeeceeEcCccceEeeeee
Confidence            57889999999999  89999999886554333443322   2334444433   3677888888888888888888888


Q ss_pred             Eecc
Q 023854          257 VDTR  260 (276)
Q Consensus       257 ~d~~  260 (276)
                      .|..
T Consensus       361 yD~s  364 (440)
T COG2067         361 YDQS  364 (440)
T ss_pred             ecCC
Confidence            7763

>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane

Probab=80.79  E-value=40  Score=29.86  Aligned_cols=21  Identities=0%  Similarity=-0.181  Sum_probs=11.3

Q ss_pred             eEEEEEEEEecCCeEEEEEEE
Q 023854          236 RASALIQHEWRPKSLFTISGE  256 (276)
Q Consensus       236 ~v~~~~~~~l~~~~~l~ls~~  256 (276)
                      .+.+.+++.+.|.+.+.+...
T Consensus       274 ~~~~G~~Y~~~~~~~l~~~y~  294 (329)
T cd00342         274 QVALGADYALSKRTDLYAEYG  294 (329)
T ss_pred             EEEEEEeEeeccchhheeeee
Confidence            355556666666555544443

Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
3emn_X	295	The Crystal Structure Of Mouse Vdac1 At 2.3 A Resol		2e-11
2k4t_A	291	Solution Structure Of Human Vdac-1 In Ldao Micelles		2e-11
2jk4_A	294	Structure Of The Human Voltage-Dependent Anion Chan		3e-11

>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution Length = 295

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 121/283 (42%), Gaps = 16/283 (5%)
Query: 5   PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
           P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E    + S + K +
Sbjct: 16  PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYR 75
Query: 64  ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
                +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+ 
Sbjct: 76  WTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHI 135
Query: 116 GISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
            +   + F  A P               G  ++F+T+    T+ N  + Y   +      
Sbjct: 136 NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTN 195
Query: 175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 233
           +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct: 196 VND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQVDPDACFSAKVNN 251
Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                       +P    T+S  +D + +     K+GL L  +
Sbjct: 252 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles Length = 291

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 16/283 (5%)
Query: 5   PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
           P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E      S + K +
Sbjct: 4   PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 63
Query: 64  ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
                +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+ 
Sbjct: 64  WTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHI 123
Query: 116 GISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
            +   + F  A P               G  ++F+TA    T+ N  + Y   +      
Sbjct: 124 NLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTN 183
Query: 175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 233
           +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct: 184 VND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 239
Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                       +P    T+S  +D + +     K+GL L  +
Sbjct: 240 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282

>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel Length = 294

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 16/283 (5%)
Query: 5   PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK 63
           P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E      S + K +
Sbjct: 7   PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 66
Query: 64  ----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYA 115
                +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+ 
Sbjct: 67  WTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHI 126
Query: 116 GISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT 174
            +   + F  A P               G  ++F+TA    T+ N  + Y   +      
Sbjct: 127 NLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTN 186
Query: 175 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 233
           +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct: 187 VND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 242
Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                       +P    T+S  +D + +     K+GL L  +
Sbjct: 243 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
3emn_X	295	Voltage-dependent anion-selective channel protein;	5e-74

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score =  227 bits (579), Expect = 5e-74
 Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 14/283 (4%)

Query: 4   GPGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKN 62
            P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E    + S + K 
Sbjct: 15  VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKY 74

Query: 63  K----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPDQ---RSGKVELQYQHEY 114
           +     +T   K +T++ L T ITV D+ A GLK  F          ++ K++  Y+ E+
Sbjct: 75  RWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 134

Query: 115 AGISTGIGFT-ANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASL 173
             +   + F  A P +  + V+G      G  ++F+T+    T+ N  + Y   +     
Sbjct: 135 INLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHT 194

Query: 174 TLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNN 233
            +ND G     S Y  V+          L  +  ++     I  ++ +DP     A+VNN
Sbjct: 195 NVND-GTEFGGSIYQKVNK--KLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNN 251

Query: 234 YGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 275
                       +P    T+S  +D + +     K+GL L  +
Sbjct: 252 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3emn_X	295	Voltage-dependent anion-selective channel protein;	100.0
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.61
3nsg_A	341	Outer membrane protein F; porin, beta barrel, beta	84.97
3bs0_A	439	TODX; beta barrel, outer membrane protein, transpo	84.9
3bry_A	441	TBUX; beta barrel, outer membrane protein, transpo	83.18

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=100.00  E-value=2.4e-68  Score=472.23  Aligned_cols=272  Identities=25%  Similarity=0.391  Sum_probs=260.2

Q ss_pred             CCCCCcccccccccccccccCCCCc-eeEEEEEecCCCcEEEEEEEecC--ceeEEEEEEEEeec--CeEEEEEEcCCCc
Q 023854            2 VKGPGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKG--ELFLADVSTQLKNK--NITTDVKVDTNSN   76 (276)
Q Consensus         2 ~~~P~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~e~~~~~~--~~~~~~~~~~~~~   76 (276)
                      |.+||.|.||+|.|||||+|||+++ |+|+|++++++|++|++++...+  +++.|++|++|+.+  +++++++|+|+|+
T Consensus        13 ~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~   92 (295)
T 3emn_X           13 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT   92 (295)
T ss_dssp             CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSC
T ss_pred             cCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCc
Confidence            4789999999999999999999999 99999999999999999998766  89999999999998  4999999999999


Q ss_pred             EEEEEEEcC-CCCCceEEEEEEc-cC--CCCceEEEEEeecceeeeEEEecC-CCCeEEEEEEEccCceEEEEEEEEEcC
Q 023854           77 LFTTITVDE-PAPGLKSIFSFIV-PD--QRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGVVGNNSVALGTDLSFDTA  151 (276)
Q Consensus        77 l~~~~~~~~-~~~glk~~~~~~~-~~--~~~~~~~~~y~~~~~~~~~~~~~~-~~p~~~~s~v~~~~~~~~G~e~~y~~~  151 (276)
                      |.+++++++ ++||||+.+++.+ |+  .++++++++|++++++++++++++ ++|.++.++++++++|++|+|+.||++
T Consensus        93 l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~  172 (295)
T 3emn_X           93 LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS  172 (295)
T ss_dssp             EEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeC
Confidence            999999999 9999999999996 76  478999999999999999999994 899999999999999999999999999


Q ss_pred             CCcceeeEeEEEEEeCCeEEEEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceEEEEEEEEeeCCCCeEEEEE
Q 023854          152 TGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARV  231 (276)
Q Consensus       152 ~~~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv  231 (276)
                      .+++++|+++++|+.+||++++++++ ++.+.+|||||++++  +++|+|+.|+.+.++++++||+||++|+++++||||
T Consensus       173 ~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~--~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakv  249 (295)
T 3emn_X          173 KSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKK--LETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKV  249 (295)
T ss_dssp             TTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSS--EEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             CCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCc--eEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEE
Confidence            88999999999999999999999984 789999999999999  999999999998899999999999999999999999


Q ss_pred             cCCceEEEEEEEEecCCeEEEEEEEEeccccC-CCCeeEEEEEEcC
Q 023854          232 NNYGRASALIQHEWRPKSLFTISGEVDTRAIE-KSAKIGLALALKP  276 (276)
Q Consensus       232 ds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~K~G~~l~~~~  276 (276)
                      |++|.|+++|||+|+|++++++|++||+++++ +.||||++|+||+
T Consensus       250 n~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~  295 (295)
T 3emn_X          250 NNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA  295 (295)
T ss_dssp             ETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence            99999999999999999999999999999884 7899999999986

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.61  E-value=0.00015  Score=63.60  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=121.7

Q ss_pred             eEEEEEecCCCcEEEEEEEe-cC-ceeEEEEEEEEeecCeEEEEEEcC---CCcEEEEEEEcCCCCCceEEEEEEc--cC
Q 023854           28 KFTVTTYTSAGVAITSSGVK-KG-ELFLADVSTQLKNKNITTDVKVDT---NSNLFTTITVDEPAPGLKSIFSFIV--PD  100 (276)
Q Consensus        28 ~l~~~~~~~~g~~f~~~~~~-~~-~~~~g~~e~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~glk~~~~~~~--~~  100 (276)
                      ++++..+...|++......- ++ +.-.+.++..|+.+.+.+...++-   .-.+.....+.  .+++-+-.+..+  +.
T Consensus        96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~  173 (295)
T 3emn_X           96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK  173 (295)
T ss_dssp             EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred             EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence            45555544557666555543 22 356889999999887666444322   23444444333  466666666543  22


Q ss_pred             C--CCceEEEEEeecceeeeEEEecCCCCeEEEEEEE-ccCceEEEEEEEEEcCCCcceeeEeEEEEEe-CCeEEEEEEc
Q 023854          101 Q--RSGKVELQYQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTH-TDLIASLTLN  176 (276)
Q Consensus       101 ~--~~~~~~~~y~~~~~~~~~~~~~~~~p~~~~s~v~-~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~-~~~~~s~~~~  176 (276)
                      .  ....+.+.|..+.+.+...++  ....+.+|..- +.+++.+|+|+.|+...+ -....+|.+|.- ++.++.++++
T Consensus       174 ~~~t~~n~~~gY~~~d~~~s~~l~--~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~-~~~~tvG~ky~ld~~~~vKakvn  250 (295)
T 3emn_X          174 SRVTQSNFAVGYKTDEFQLHTNVN--DGTEFGGSIYQKVNKKLETAVNLAWTAGNS-NTRFGIAAKYQVDPDACFSAKVN  250 (295)
T ss_dssp             TEEEEEEEEEEEECSSEEEEEEEE--TTTEEEEEEEEECSSSEEEEEEEEEETTEE-EEEEEEEEEECCSSSEEEEEEEE
T ss_pred             CCeeeEEEEEEEcCCCEEEEEEEC--CCCeEEEEEEEECCCceEEEEEEEEeccCC-CcEEEEEEEEEcCCCCEEEEEEC
Confidence            1  234578889999887666654  23567766554 689999999999998643 467888888986 5899999999


Q ss_pred             CCCCeEEEEEEEEeCCCcceeEEEEEEEe-ecCCceEEEEEE
Q 023854          177 DKGDTLNASYYHIVSPLTNTAVGAELTHS-FSSNENTLTIGT  217 (276)
Q Consensus       177 ~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~-~~~~~~~~~vG~  217 (276)
                      +++ .+.+.|-|++.|...+.+++|+... +..+...+.+|.
T Consensus       251 ~~g-~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l  291 (295)
T 3emn_X          251 NSS-LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGL  291 (295)
T ss_dssp             TTS-EEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEE
T ss_pred             CCC-EEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEE
Confidence            876 9999999999999545666666543 223455555554

>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}

Probab=84.97  E-value=19  Score=31.45  Aligned_cols=117  Identities=5%  Similarity=0.000  Sum_probs=72.1

Q ss_pred             eeeEeEEEEEeCCeEEEEEEcC---------------CCCeEEEEEEEEeCCCcceeEEEEEEEeec-------------
Q 023854          156 TKCNAGLSYTHTDLIASLTLND---------------KGDTLNASYYHIVSPLTNTAVGAELTHSFS-------------  207 (276)
Q Consensus       156 ~~~~~~~~y~~~~~~~s~~~~~---------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-------------  207 (276)
                      ..|.+++.|....+.+.+-...               ..+.+.+.--+.+.+   +.+++...+...             
T Consensus       171 ~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~~l~a~Y~~~~~~~~~~~~~~~~~~  247 (341)
T 3nsg_A          171 DGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN---VYLAAVYAETRNMSIVENTVTDTVE  247 (341)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT---EEEEEEEEEESSCCCEECTTTCCEE
T ss_pred             ceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC---EEEEEEEEEEEeccccCcccccccc
Confidence            4577777787777766654321               012233333334432   355554443321             


Q ss_pred             --CCceEEEEEEEEeeCCCCeEEEEE-----cC----------CceEEEEEEEEecCCeEEEEEEEEeccc--------c
Q 023854          208 --SNENTLTIGTQHALDPLTSVKARV-----NN----------YGRASALIQHEWRPKSLFTISGEVDTRA--------I  262 (276)
Q Consensus       208 --~~~~~~~vG~~y~ld~~~~~Kakv-----ds----------~g~v~~~~~~~l~~~~~l~ls~~~d~~~--------~  262 (276)
                        .+...+++|++|++.+..++++-.     +.          .-.+.+.++..|++...+-+...+|..+        .
T Consensus       248 ~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~  327 (341)
T 3nsg_A          248 MANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYV  327 (341)
T ss_dssp             CCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSSEEEEEEEEEECCCCCSSCTTTT
T ss_pred             cceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCCEEEEEEEEEecccCcccccccc
Confidence              134568999999998876666532     11          2247888999999999999988887642        1


Q ss_pred             CCCCeeEEEEEEc
Q 023854          263 EKSAKIGLALALK  275 (276)
Q Consensus       263 ~~~~K~G~~l~~~  275 (276)
                      ..+-.+++||...
T Consensus       328 ~~dd~~~vGlry~  340 (341)
T 3nsg_A          328 GTDDQAAVGITYQ  340 (341)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             CcCCEEEEEEEEE
Confidence            2356899998753

>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*

Probab=84.90  E-value=22  Score=32.08  Aligned_cols=51  Identities=16%  Similarity=0.190  Sum_probs=36.7

Q ss_pred             CCeEEEEEEEEeCCCcceeEEEEEEEeecC--------------------------CceEEEEEEEEeeCCCCeEEEEE
Q 023854          179 GDTLNASYYHIVSPLTNTAVGAELTHSFSS--------------------------NENTLTIGTQHALDPLTSVKARV  231 (276)
Q Consensus       179 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~--------------------------~~~~~~vG~~y~ld~~~~~Kakv  231 (276)
                      -..+.++..|+++++  +.+.+++.|..-+                          ....+++|++|++++..++|+=+
T Consensus       278 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~  354 (439)
T 3bs0_A          278 PASLTLGLAHQFNER--WVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGY  354 (439)
T ss_dssp             CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEE
T ss_pred             CcEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEee
Confidence            357899999999999  8999988876321                          12246777777777676676654

>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}

Probab=83.18  E-value=26  Score=31.54  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             CeEEEEEEEEeCCCcceeEEEEEEEee
Q 023854          180 DTLNASYYHIVSPLTNTAVGAELTHSF  206 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~  206 (276)
                      ..+.++..|+++++  +.+.+++.|..
T Consensus       279 ~~~~~g~~~~~~~~--~~l~~d~~~~~  303 (441)
T 3bry_A          279 AQLTVGISHQFNDQ--LSVSADYQRVF  303 (441)
T ss_dssp             CEEEEEEEEESSSS--EEEEEEEEEEC
T ss_pred             cEEEEeEEEEeCCC--EEEEEEEEEEE
Confidence            57889999999998  88898888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1t16a_	427	Long-chain fatty acid transport protein FadL {Esch	82.02
d1i78a_	297	Outer membrane protease OMPT {Escherichia coli [Ta	81.22

>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=12  Score=30.61  Aligned_cols=76  Identities=14%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             CeEEEEEEEEeCCCcceeEEEEEEEeec-----------------------CCceEEEEEEEEeeCCCCeEEEEEcC---
Q 023854          180 DTLNASYYHIVSPLTNTAVGAELTHSFS-----------------------SNENTLTIGTQHALDPLTSVKARVNN---  233 (276)
Q Consensus       180 ~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-----------------------~~~~~~~vG~~y~ld~~~~~Kakvds---  233 (276)
                      ..+.+++-+++.++  +.+.+++.|..-                       .....+.+|.+|++.+...+|+-+.-   
T Consensus       273 ~~~~~G~~~~~~~~--~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~lR~Gy~y~~~  350 (427)
T d1t16a_         273 EMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDS  350 (427)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEEEEEEEEECC
T ss_pred             cEEEEEEEEEeccc--eeEEEeeeecccccccccccccCCCcccccccccccceEEEEEEEEEEecccEEEEEEEEEccC
Confidence            46777777888888  778887776421                       23567888889888777788887652   


Q ss_pred             ---------------CceEEEEEEEEecCCeEEEEEEEE
Q 023854          234 ---------------YGRASALIQHEWRPKSLFTISGEV  257 (276)
Q Consensus       234 ---------------~g~v~~~~~~~l~~~~~l~ls~~~  257 (276)
                                     .-.+++.+..++++.+.+.++.+.
T Consensus       351 ~~~~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y  389 (427)
T d1t16a_         351 PVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSY  389 (427)
T ss_dssp             SSCTTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred             CCCcccccccccCCCCEEEEEEEEEEcCCCeEEEEEEEE
Confidence                           234677777788888777776653

>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: OMPT-like
family: Outer membrane protease OMPT
domain: Outer membrane protease OMPT
species: Escherichia coli [TaxId: 562]

Probab=81.22  E-value=12  Score=30.23  Aligned_cols=185  Identities=11%  Similarity=0.095  Sum_probs=97.7

Q ss_pred             EEEEEcCCCcEEEEEEEcCCCCCceEEEEEE--ccCCCCceEEEEEeecc---------eeeeEEEecCCCCeEEEEE-E
Q 023854           67 TDVKVDTNSNLFTTITVDEPAPGLKSIFSFI--VPDQRSGKVELQYQHEY---------AGISTGIGFTANPIVNFSG-V  134 (276)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~glk~~~~~~--~~~~~~~~~~~~y~~~~---------~~~~~~~~~~~~p~~~~s~-v  134 (276)
                      +..++++..-|+++++.+ +.|++.++++.+  ++...+....-+|..+.         .|-++.++--..-.++... .
T Consensus        42 LdW~~~n~~~i~~~~~~~-~~~~l~l~~~g~~~~~~~~G~M~DyDW~~~~~~~~wt~~S~h~~t~l~~a~~~dLn~~~~l  120 (297)
T d1i78a_          42 LDWKFNNAAIIKGAINWD-LMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGWL  120 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEC-CSSSEEEEEEEEEESSCEEEEEEEEECCCTTSTTSCSEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             eeeecCCceEEEEEEEee-ccCCeEEEEEEEEEccCCCCceeccccCCCccCCCCcccccCCCCCcchhheeeeccceEE
Confidence            444555666788888888 899988877775  33222223333333211         1223333211111233333 3


Q ss_pred             EccCceEEEEEEEEEcCCCcceeeEeEEEEEeCCe-EE-EEEEcCCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceE
Q 023854          135 VGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDL-IA-SLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT  212 (276)
Q Consensus       135 ~~~~~~~~G~e~~y~~~~~~~~~~~~~~~y~~~~~-~~-s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~  212 (276)
                      +..++..+|+-+.|+....+.+.|-...-|..... -- ...+ +++ ....+|-|+..-   .-+|....+....  ..
T Consensus       121 l~~~~y~lg~~~Gyqy~~~~wtAyGGsy~y~~~~~~r~~~g~~-p~~-~~~ItY~q~~~~---~yiGL~g~y~~~~--~~  193 (297)
T d1i78a_         121 LNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSF-PNG-ERAIGYKQRFKM---PYIGLTGSYRYED--FE  193 (297)
T ss_dssp             EECSSEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCBC-CTT-CSEEEEEEEEEE---EEEEEEEEEEETT--EE
T ss_pred             EecCCeEEEEEeeeEEeecceEecCccEEcCCCCCcccccccc-CCC-cceEEEEeEEeE---EEEeEEEEEEecc--eE
Confidence            35777888888887765433332222222222110 00 1111 122 335688888753   3566666666643  33


Q ss_pred             EEEEEEE------------ee-CCCCeEEEEEcCCce--EEEEEEEEecCCeEEEEEEEEec
Q 023854          213 LTIGTQH------------AL-DPLTSVKARVNNYGR--ASALIQHEWRPKSLFTISGEVDT  259 (276)
Q Consensus       213 ~~vG~~y------------~l-d~~~~~Kakvds~g~--v~~~~~~~l~~~~~l~ls~~~d~  259 (276)
                      +....+|            -+ +...+++=+.++..-  |++....++.|++++.+++..+.
T Consensus       194 f~~~l~ys~wv~a~d~D~H~lR~~~~~f~~~~~~~~~~~v~~~a~Y~vt~~~s~~ve~~y~~  255 (297)
T d1i78a_         194 LGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR  255 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeeceeeecCCCccceeccCCcccccccCCccEEEEEEEEEEEECCCEEEEEEEEEEE
Confidence            4444444            22 223567777765322  56666889999999999999774