Citrus Sinensis ID: 023869

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPSPSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTPRDNHISDTSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLKGFEESTEEARRLRVPQIRGQSVKKNRHVWLKLISNVRLIC
Secondary Structure (PSIPRED)
cccccccccccccEEEEccccccccHHHHHHHHcccccccccccEEEccccccccccccccccccccEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHccccEEEccccccccccccHHHHcccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccEEccccccccccHHHHHccccEEEEEHHHHHHHHHHcccccccccHHHHHcccEEEEcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccEEcEEEccccccEEEccccccccccccHHHHHHHHHcEEEcc
Coil and Loop (DISEMBL)
mkiwcdvcdkeeasvfcsADEAALCVACDRRVHHANKlaskhprfnlvspsykesplcdiCQERRALLFCQEDRAILcrecdipihkaseytKKHNRFLLTGVKLTASASvtfnttynpspssstccdttktttttsiddqkkispsshsnsifssnstprdnhisdtSSISEYLMEtlpgwrvddfldppsyatstnVLCKICDQDLERKMVYFSLLEDLAIWvplfssqngllkgfeESTEEARRlrvpqirgqsvkKNRHVWLKLISNVRLIC
Flexible Loop (DISEMBL)
mkiwcdvcDKEEASVFCSADEAALCVACDRRVHHAnklaskhprfnlvspsyKESPLCDICQERRALLFCQEDRAILCRECDIPIhkaseytkkhnRFLLTGVKLTASASVTfnttynpspssstccdtTKTTTttsiddqkkispsshsnsifssnstprdnHISDTSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLKGFEesteearrlrvpqirgqsvkknrhvWLKLISNVRLIC
Low Complexity Region (SEG)
MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVtfnttynpspssstccdttktttttsIDDQKKispsshsnsifssnsTPRDNHISDTSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLKGFEESTEEARRLRVPQIRGQSVKKNRHVWLKLISNVRLIC
Disordered region (IsUnstruct)
**IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTY*******************************************************EYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLKGF*******************VKKNRHVWLKLISNVRLI*
Disordered Region (DISOPRED)
MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIH*******KHNRFLLTGVKL************NP*PSS*******************************************************LPGWRVDDFLDPPSYATSTNVL******************************************************************KLISNVRLIC
Disordered Region (DISEMBL)
MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTY************************************************SDTSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLK***********LRVPQIRGQSVKKNRHVWLKLISNVRLIC
Disordered Region (DISPRO)
*KIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTA**************************************************************SISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLKGFEESTEEARRLRVPQIRGQSVKKNRHVWLKLISNVRLIC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPSPSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTPRDNHISDTSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVPLFSSQNGLLKGFEESTEEARRLRVPQIRGQSVKKNRHVWLKLISNVRLIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q0IGM7	242	B-box zinc finger protein	yes	no	0.670	0.764	0.571	1e-55
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.692	0.577	0.557	2e-52
Q9SYM2	299	Probable salt tolerance-l	no	no	0.376	0.347	0.561	6e-29
Q96288	248	Salt tolerance protein OS	no	no	0.398	0.443	0.567	9e-29
Q9SID1	238	Salt tolerance-like prote	no	no	0.394	0.457	0.545	5e-26
Q9SK53	294	Zinc finger protein CONST	no	no	0.358	0.336	0.391	2e-14
O82256	332	Zinc finger protein CONST	no	no	0.311	0.259	0.438	2e-13
Q940T9	362	Zinc finger protein CONST	no	no	0.315	0.240	0.381	2e-13
O50055	355	Zinc finger protein CONST	no	no	0.362	0.281	0.354	4e-13
Q39057	373	Zinc finger protein CONST	no	no	0.394	0.292	0.330	9e-13

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 146/210 (69%), Gaps = 25/210 (11%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKIWC VCDKEEASVFC ADEAALC  CDR VH ANKLA KH RF+L SP++K++PLCDI
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           C ERRALLFCQEDRAILCRECDIPIH+A+E+TKKHNRFLLTGVK++AS S     + + S
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNS 120

Query: 121 PSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTPRD-----------NHI---- 165
            ++     T   + ++ +       PSS SN +F+S+S+              +H+    
Sbjct: 121 AAAFGRAKTRPKSVSSEV-------PSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSG 173

Query: 166 ---SDTSSISEYLMETLPGWRVDDFLDPPS 192
                T SISEYLMETLPGWRV+D L+ PS
Sbjct: 174 SGSGCTGSISEYLMETLPGWRVEDLLEHPS 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 148/210 (70%), Gaps = 19/210 (9%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKE--SPLC 58
           MKI CDVCDKEEASVFC+ADEA+LC  CD +VHHANKLASKH RF+L+ PS     SPLC
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 59  DICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYN 118
           DICQ+++ALLFCQ+DRAILC++CD  IH A+E+TKKH+RFLLTGVKL+A++SV     Y 
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSV-----YK 115

Query: 119 PSPSSSTCCDTTK--TTTTTSIDD----QKKISPSSHSNSI--FS--SNSTPRDNHISDT 168
           P+  SS+   + +  +   +SI +    +K +S    SN I  FS  +      N    T
Sbjct: 116 PTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGST 175

Query: 169 SSISEYLMETLPGWRVDDFLDP--PSYATS 196
           S+ISEYLM+TLPGW V+DFLD   P+Y  S
Sbjct: 176 STISEYLMDTLPGWHVEDFLDSSLPTYGFS 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI C+VC+  EA+V C ADEAALC ACD ++H ANKLA KH R  L S S    P CDI
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL-SASASSIPKCDI 59

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKL 105
           CQE     FC +DRA+LCR+CD+ IH  + +   H RFLLTG+K+
Sbjct: 60  CQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  127 bits (319), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%), Gaps = 1/111 (0%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC+K  A+V C ADEAALC  CD  +H ANKLASKH R +L S S K  P CDI
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTK-FPRCDI 59

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASV 111
           CQE+ A +FC EDRA+LCR+CD  IH A+  +  H RFL TG+K+  ++++
Sbjct: 60  CQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTI 110

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 74/110 (67%), Gaps = 1/110 (0%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC+K  A++ C ADEAALC  CD  VH ANKLASKH R  L S S K  P CDI
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPP-CDI 59

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASAS 110
           C E+ A +FC EDRA+LCR+CD   H  +  +  H RFL TG+++  S++
Sbjct: 60  CLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSST 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 16/115 (13%)

Query: 5   CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
           CD C    A++FC AD A LC  CD ++H ANKLAS+H R            LC++C++ 
Sbjct: 8   CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERV----------WLCEVCEQA 57

Query: 65  RALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLT------GVKLTASASVTF 113
            A + C+ D A LC  CD  IH A+  +++H R  +T      G   +AS+SV F
Sbjct: 58  PAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNF 112

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 12/98 (12%)

Query: 5   CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
           CD CD   A V+C AD A LC+ACD++VH AN+L +KH R          S LCD C E 
Sbjct: 13  CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR----------SLLCDSCNES 62

Query: 65  RALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTG 102
            + LFC+ +R++LC+ CD   H AS  +  H+R    G
Sbjct: 63  PSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEG 98

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 10/97 (10%)

Query: 5   CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
           CD C    A+++C  D A LC++CD +VH ANKLAS+H R            +C++C++ 
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVW----------MCEVCEQA 55

Query: 65  RALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLT 101
            A + C+ D A LC  CD  IH A+   ++H R  +T
Sbjct: 56  PAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 5   CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
           CD C     +V+C AD A LC +CD +VH AN+LAS+H R            +C  C+  
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVR----------VCQSCERA 61

Query: 65  RALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFN 114
            A  FC+ D A LC  CD  IH A+   ++H R  +  +   + +S   N
Sbjct: 62  PAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATN 111

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 12/121 (9%)

Query: 5   CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
           CD C     +V+C AD A LC++CD +VH AN++AS+H R            +C+ C+  
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVR----------VCESCERA 69

Query: 65  RALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPSPSSS 124
            A   C+ D A LC  CD  +H A+   ++H R  +  +   + +S+T  TT++ S  + 
Sbjct: 70  PAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMT--TTHHQSEKTM 127

Query: 125 T 125
           T
Sbjct: 128 T 128

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
225458101	303	PREDICTED: probable salt tolerance-like	0.956	0.871	0.466	6e-60
224077894	204	predicted protein [Populus trichocarpa]	0.670	0.906	0.616	8e-60
302398745	300	COL domain class transcription factor [M	0.934	0.86	0.45	1e-57
356553411	276	PREDICTED: probable salt tolerance-like	0.778	0.778	0.536	2e-57
224082950	283	predicted protein [Populus trichocarpa]	0.891	0.869	0.473	2e-56
225427724	302	PREDICTED: probable salt tolerance-like	0.898	0.821	0.448	3e-56
255538820	309	Salt-tolerance protein, putative [Ricinu	0.942	0.841	0.439	6e-56
297744753	255	unnamed protein product [Vitis vinifera]	0.847	0.917	0.465	9e-56
255543817	226	Salt-tolerance protein, putative [Ricinu	0.717	0.876	0.601	4e-55
224066046	310	predicted protein [Populus trichocarpa]	0.942	0.838	0.458	6e-55

>gi|225458101|ref|XP_002280716.1| PREDICTED: probable salt tolerance-like protein At1g75540 [Vitis vinifera] gi|302142591|emb|CBI19794.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 140/300 (46%), Positives = 181/300 (60%), Gaps = 36/300 (12%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC +EEA+VFC+ADEAALC ACD RVHHANKLASKH RF+L+ PS K+ PLCD+
Sbjct: 1   MKIHCDVCSREEATVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPSPKQVPLCDV 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTY--- 117
           CQE+RA LFCQ+DRAILCR+CD+PIH A+E+T+KHNRFLLTG+KL+A++++  +TT    
Sbjct: 61  CQEKRAFLFCQQDRAILCRDCDLPIHTANEHTQKHNRFLLTGIKLSATSALYSSTTSVAD 120

Query: 118 ----NPSPSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTPRDNHISDTSSISE 173
               + S SS    ++     +      K  SP++  NSI         +    TSSISE
Sbjct: 121 SVSDHKSQSSLKKPESVPPEISHPPSITKTSSPTTAINSINKGGDASLTSEGVSTSSISE 180

Query: 174 YLMETLPGWRVDDFLD----PPSYATST--NVLCKICDQDLERKMVYFSLLEDLAIWVP- 226
           YL+E LPGW V+DFLD    P  +  S   +VL  + D DL+  +  FS  E+L +WVP 
Sbjct: 181 YLIEMLPGWHVEDFLDSTSAPSGFCKSAGDDVLPYLLDADLDNNLSSFS-SENLGVWVPQ 239

Query: 227 --------LFSSQNGLLKGFEESTEEARR-----------LRVPQIRGQSV--KKNRHVW 265
                    +SS  G   G +ES E                 VPQI   SV  K++R  W
Sbjct: 240 APTPLHPSQYSSFMGGQIGLKESKEATTMKPNSKKWGDDVFTVPQISPPSVGSKRSRSFW 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077894|ref|XP_002305454.1| predicted protein [Populus trichocarpa] gi|222848418|gb|EEE85965.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 130/211 (61%), Positives = 156/211 (73%), Gaps = 26/211 (12%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVCD  EA+VFC ADEAALC  CD RVHHANKLASKH RF+LV PS+KESPLCDI
Sbjct: 1   MKIRCDVCDNVEATVFCCADEAALCDGCDHRVHHANKLASKHSRFSLVHPSFKESPLCDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQERRALLFCQEDRAILCRECD+PIHKA+E+T+KHNRFLLTGVKL+AS+S+      + +
Sbjct: 61  CQERRALLFCQEDRAILCRECDLPIHKANEHTQKHNRFLLTGVKLSASSSL------HTA 114

Query: 121 PSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTP----------RDNHISD--- 167
            S+ST    +   TT++ + Q  +    +SN I SS S             +NH+SD   
Sbjct: 115 SSTSTNNFDSNINTTSNRNHQPYL---KNSNEILSSPSVETASATTAYNFEENHVSDNGS 171

Query: 168 --TSSISEYLMETLPGWRVDDFLDPPSYATS 196
             TSSISEYL ET+PGWR+DDFLD PS+A++
Sbjct: 172 ISTSSISEYL-ETVPGWRIDDFLD-PSFASN 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398745|gb|ADL36667.1| COL domain class transcription factor [Malus x domestica]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 178/300 (59%), Gaps = 42/300 (14%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC+K++ASVFC+ADEAALC ACD RVHHANKLASKH RF+L+ PS KE P+CDI
Sbjct: 1   MKIQCDVCNKDDASVFCTADEAALCDACDHRVHHANKLASKHHRFSLIHPSSKEFPVCDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQERRA LFCQ+DRAILCRECD+ IH A+E+T KHNRFLLTG+KL+A++++  +    P 
Sbjct: 61  CQERRAFLFCQQDRAILCRECDLSIHNANEHTLKHNRFLLTGIKLSATSALYESP---PP 117

Query: 121 PSSSTCCDTT------KTTTTTSIDDQKKISPSSHSNSIFSSNST--------PRDNHIS 166
           P+ +T    T      +  T  S+        + +   + + NST           N + 
Sbjct: 118 PTVATASSETADLKKQQPLTKESVSTASPPISNPNPPPVAAKNSTSSTAAVNKGSGNLVG 177

Query: 167 DTSSISEYLMETLPGWRVDDFLD----PPSYATSTN-VLCKICDQDLERKMVYFSLLEDL 221
            TSSISEYL+ETLPGW V+DFLD    P  ++ + N ++    D      +  FS  E++
Sbjct: 178 ATSSISEYLIETLPGWHVEDFLDFSSAPFGFSKADNDMMLPFSDAYPGSNLNSFS-SENM 236

Query: 222 AIWVP--------LFSSQNGLLKGFEESTE-----EARRL------RVPQIRGQSVKKNR 262
            +WVP         +S   G   GF+E+ E       +RL       VPQI   S+   R
Sbjct: 237 GMWVPQAPQAPPHQYSQVGGGFVGFKETKEGTNMNAGKRLWMDDGFTVPQISPPSLGSKR 296

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553411|ref|XP_003545050.1| PREDICTED: probable salt tolerance-like protein At1g75540-like [Glycine max]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 158/233 (67%), Gaps = 18/233 (7%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC+K EASVFC+ADEAALC  CD RVHHANKLASKH RF+L+ PS+K+ PLCDI
Sbjct: 1   MKIQCDVCNKHEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSHKQHPLCDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQERRA  FCQ+DRAILC+ECD+ IH A+E+T KH+RFLLTGVKL ASA +         
Sbjct: 61  CQERRAFTFCQQDRAILCKECDVSIHSANEHTLKHDRFLLTGVKLAASAMLR-------- 112

Query: 121 PSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTP---RDNHISDTSSISEYLME 177
            SS T  D+  T +  ++  Q    PSS + +  ++N+          +  SSISEYL+E
Sbjct: 113 -SSQTTSDSNSTPSLLNVSHQTTPLPSSTTTTTTNNNNNKVAVEGTGSTSASSISEYLIE 171

Query: 178 TLPGWRVDDFLD----PPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWVP 226
           TLPGW+V+DFLD    P  +  +  VL ++ D D+E  M  FS  E++ IWVP
Sbjct: 172 TLPGWQVEDFLDSYFVPFGFCKNDEVLPRL-DADVEGHMGSFS-TENMGIWVP 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082950|ref|XP_002306904.1| predicted protein [Populus trichocarpa] gi|222856353|gb|EEE93900.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/302 (47%), Positives = 178/302 (58%), Gaps = 56/302 (18%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC KEEASVFC+ADEAALC  CD RVHHANKLASKH RF+L+ PS K  P+CDI
Sbjct: 1   MKIQCDVCSKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHPSSKNFPICDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTF----NTT 116
           CQ++RA LFCQ+DRAILCR+CD PIH A+E+T+KHNRFLLTGVKL+A+++V      + T
Sbjct: 61  CQDKRAFLFCQQDRAILCRDCDGPIHTANEHTQKHNRFLLTGVKLSATSAVYMSSSSSVT 120

Query: 117 YNPSPSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTPRDNHISDTSSISEYLM 176
            N +P +     T    T  + D    ++        F S +         +S+ISEYLM
Sbjct: 121 MNSNPPAVP--STLSANTVINKDGDNLVTSEG-----FGSTT---------SSTISEYLM 164

Query: 177 ETLPGWRVDDFLDPPSYATSTNVLCKICD--------QDLERKMVYFSLLEDLAIWV--- 225
           ETLPGW V++FLD  S +T+     KI D         DLER M  FS  E L +WV   
Sbjct: 165 ETLPGWHVEEFLD--SSSTTPFGFSKIDDGLLPYMDTHDLERNMSSFS-SESLGLWVPQA 221

Query: 226 ---PLFSSQNGLL------KGFEESTEEA-----RRL-----RVPQIRGQS---VKKNRH 263
              PL +SQ           GF+E+ E       RRL      VPQI   S    K++R 
Sbjct: 222 PTPPLCTSQQYYYPQLVGQSGFKETKESTNMKANRRLTDDAFTVPQISPPSNIGSKRSRP 281

Query: 264 VW 265
           +W
Sbjct: 282 LW 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427724|ref|XP_002274649.1| PREDICTED: probable salt tolerance-like protein At1g75540-like [Vitis vinifera]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/319 (44%), Positives = 180/319 (56%), Gaps = 71/319 (22%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI C  C KEEASVFC+ADEA LC  CDR+VHHANKLA KH R++L+ PS K+ P CD+
Sbjct: 1   MKIQCSFCSKEEASVFCTADEAPLCDICDRQVHHANKLAGKHKRYSLLRPSDKDFPSCDL 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASAS---------- 110
           CQ++RA LFC+EDRAILCRECD+ IHKA+E+T+KH RFLLTGVKL+ASAS          
Sbjct: 61  CQDKRAFLFCKEDRAILCRECDVSIHKANEHTRKHYRFLLTGVKLSASASEYPISASSSS 120

Query: 111 -VTFNTTYNPSPSSSTCCDTTKTTTTTSID------DQKKISPSSHS----NSIFSSNST 159
             T ++   PS SS      TK  T+ S D         +I PS  S     S+ +  S 
Sbjct: 121 PSTIDSETKPSKSS------TKRPTSVSADIFCNTAIGAEIKPSKTSTKRPTSVSAGISN 174

Query: 160 P------------RDNHISDTSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQD 207
           P            RD+   D  SISEYLMETLPGWRVDDFLDP      ++   +  D  
Sbjct: 175 PTVKTAPAAASYKRDH---DNQSISEYLMETLPGWRVDDFLDP------SSGFSEFPDHG 225

Query: 208 LERKMVYFSLLEDLAIWV----------PLFSSQNGLLKGFEESTEEARRLR-------- 249
           +   +  F   ED A+WV          PL+  Q G   G + S EEA  ++        
Sbjct: 226 VGTHLSSFP-YEDFAVWVPQDTPQFNHLPLYIPQTGGGNGLKAS-EEANTVKVSRKRIDD 283

Query: 250 ---VPQIRGQSVKKNRHVW 265
              VP+I    +KK+R++W
Sbjct: 284 GFTVPEISTLPLKKSRNLW 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538820|ref|XP_002510475.1| Salt-tolerance protein, putative [Ricinus communis] gi|223551176|gb|EEF52662.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/314 (43%), Positives = 176/314 (56%), Gaps = 54/314 (17%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC KEEASVFC+ADEAALC ACD  VHHANKLASKH RF L+ PS K  P+CD+
Sbjct: 1   MKIQCDVCSKEEASVFCTADEAALCDACDHSVHHANKLASKHHRFCLLHPSSKSFPICDV 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQE+RA +FCQ+DRAILCR+CD+PIHKA+E+T+KHNRFLLTGVKL+A++ +   ++ +  
Sbjct: 61  CQEKRAFVFCQQDRAILCRDCDVPIHKANEHTQKHNRFLLTGVKLSATSVIYMPSSSS-- 118

Query: 121 PSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSS-----------------------N 157
            S  + CD    + +      KK S S+  +S F +                       N
Sbjct: 119 -SVPSGCDLVPDSKSQQQQSAKKPSNSNPPSSTFKTLSPNSTLSKTSPSSNTVVNKSGDN 177

Query: 158 STPRDNHISDTSSISEYLMETLPGWRVDDFLDPPS----YATSTNVLCKICDQDLERKMV 213
           S   +  I   SSISEYLMETLPGW VDDFLD PS    +    + +  +   DL     
Sbjct: 178 SVINNEGIGSVSSISEYLMETLPGWHVDDFLDFPSIPFGFCKPDDEILPVGGGDLGDVTN 237

Query: 214 YFSLLEDLAIWVPLFS---------SQNGLLKGFEESTEEA------RR-----LRVPQI 253
            FS   ++ IWVP             Q     GF+E+ E        RR       VPQ+
Sbjct: 238 PFS--SEMGIWVPQAPIPPHPSQHYQQMVSQVGFKETKEATNTKPNNRRWSDDAFTVPQV 295

Query: 254 RGQSV--KKNRHVW 265
              S+  K++R  W
Sbjct: 296 SPPSIGSKRSRSFW 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744753|emb|CBI38015.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 133/286 (46%), Positives = 172/286 (60%), Gaps = 52/286 (18%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI C  C KEEASVFC+ADEA LC  CDR+VHHANKLA KH R++L+ PS K+ P CD+
Sbjct: 1   MKIQCSFCSKEEASVFCTADEAPLCDICDRQVHHANKLAGKHKRYSLLRPSDKDFPSCDL 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQ++RA LFC+EDRAILCRECD+ IHKA+E+T+KH RFLLTGVKL+ASA           
Sbjct: 61  CQDKRAFLFCKEDRAILCRECDVSIHKANEHTRKHYRFLLTGVKLSASA----------- 109

Query: 121 PSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSSNSTPRDNHISDTSSISEYLMETLP 180
              S    +  +++ ++ID + K S SS      +   T RD+   D  SISEYLMETLP
Sbjct: 110 ---SEYPISASSSSPSTIDSETKPSKSS------TKRPTSRDH---DNQSISEYLMETLP 157

Query: 181 GWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLEDLAIWV----------PLFSS 230
           GWRVDDFLDP      ++   +  D  +   +  F   ED A+WV          PL+  
Sbjct: 158 GWRVDDFLDP------SSGFSEFPDHGVGTHLSSFP-YEDFAVWVPQDTPQFNHLPLYIP 210

Query: 231 QNGLLKGFEESTEEARRLR-----------VPQIRGQSVKKNRHVW 265
           Q G   G + S EEA  ++           VP+I    +KK+R++W
Sbjct: 211 QTGGGNGLKAS-EEANTVKVSRKRIDDGFTVPEISTLPLKKSRNLW 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543817|ref|XP_002512971.1| Salt-tolerance protein, putative [Ricinus communis] gi|223547982|gb|EEF49474.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 150/216 (69%), Gaps = 18/216 (8%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVCDK EASVFCSADEAALC ACDR VHHANKLASKH RF+L+  S K+SPLCDI
Sbjct: 1   MKIKCDVCDKSEASVFCSADEAALCEACDRHVHHANKLASKHHRFSLLRTSSKQSPLCDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQERRA LFCQEDRAILCRECDIPIHKA+E+TKKHNRFLLTG+KL+ S+S+   ++ + S
Sbjct: 61  CQERRAFLFCQEDRAILCRECDIPIHKANEHTKKHNRFLLTGIKLSNSSSLYPTSSSSNS 120

Query: 121 PSSSTCCDTTKTTTTTSIDDQKKISPSSHSNSIFSS---------NSTPRDNHISD---- 167
              S    T+   +         I+  S SN + SS         +ST   N+  D    
Sbjct: 121 SCDSKKITTSNKKSLQQQPYVNNINTPSFSNEMLSSSSVERASSPSSTAAYNNFDDNVSI 180

Query: 168 -TSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCK 202
            TSSISEYL E LPGWRVDDFLDP   A +T+  CK
Sbjct: 181 STSSISEYL-EALPGWRVDDFLDP---AIATDGFCK 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066046|ref|XP_002302002.1| predicted protein [Populus trichocarpa] gi|222843728|gb|EEE81275.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 175/299 (58%), Gaps = 39/299 (13%)

Query: 1   MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
           MKI CDVC+KEEASVFC+ADEAALC  CD RVHHANKLASKH RF+L+ PS K  P+CDI
Sbjct: 1   MKIQCDVCNKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHPSSKNFPICDI 60

Query: 61  CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVTFNTTYNPS 120
           CQE+RA LFCQ+DRAILCRECD PIH A+E+T+KHNRFLLTGVKL+A+++V  +++   +
Sbjct: 61  CQEKRAFLFCQQDRAILCRECDGPIHTANEHTQKHNRFLLTGVKLSATSAVYISSSSVTN 120

Query: 121 PSSSTCCDTTKTTTTTSIDDQKK--ISPSSHSN-----SIFSSNS---TPRDNHISD--- 167
                  D+            KK       +SN     S  S+N+      DN +++   
Sbjct: 121 SGGDLVPDSKSQQQQQQQQSIKKPVFDAPVNSNPPTVPSTLSTNTEVNKGGDNLVTNEGF 180

Query: 168 ----TSSISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICD--------QDLERKMVYF 215
               +S+ISEYLMETLPGW V+DFLD    +T+    CKI D         DLE  M   
Sbjct: 181 GSTTSSTISEYLMETLPGWHVEDFLD---SSTTPFGFCKIDDGLLPFMDAHDLESNMSS- 236

Query: 216 SLLEDLAIWVPLFSSQNGLLKGFEESTEEARRLRVPQIRGQSVKKNRHVWLKLISNVRL 274
              E L +WVP   S          +   +++   PQ+ GQS  K       + +N RL
Sbjct: 237 FSSESLGLWVPQAPS----------TPYTSQQYYYPQLVGQSGFKEIKETTNMKANRRL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.695	0.793	0.556	2.6e-54
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.402	0.335	0.725	7.7e-52
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.398	0.443	0.567	2.3e-30
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.394	0.457	0.545	8.2e-28
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.369	0.629	0.495	2.6e-24
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.347	0.558	0.49	7.8e-23
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.300	0.233	0.397	7.1e-17
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.293	0.243	0.451	5e-16
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.315	0.295	0.402	3.3e-15
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.300	0.242	0.387	1.1e-14

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 113/203 (55%), Positives = 129/203 (63%)

Query:     1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
             MKIWC VCDKEEASVFC ADEAALC  CDR VH ANKLA KH RF+L SP++K++PLCDI
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    61 CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVXXXXXXXXX 120
             C ERRALLFCQEDRAILCRECDIPIH+A+E+TKKHNRFLLTGVK++AS S          
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNS 120

Query:   121 XXXXXXXXXXXXXXXXXIDDQ--KKXXXXXXXXXXXXXXXTPRDN--HISD-------TS 169
                              +      +                  +N  H+SD       T 
Sbjct:   121 AAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTG 180

Query:   170 SISEYLMETLPGWRVDDFLDPPS 192
             SISEYLMETLPGWRV+D L+ PS
Sbjct:   181 SISEYLMETLPGWRVEDLLEHPS 203

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 82/113 (72%), Positives = 99/113 (87%)

Query:     1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKE--SPLC 58
             MKI CDVCDKEEASVFC+ADEA+LC  CD +VHHANKLASKH RF+L+ PS     SPLC
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    59 DICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASV 111
             DICQ+++ALLFCQ+DRAILC++CD  IH A+E+TKKH+RFLLTGVKL+A++SV
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSV 113

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 63/111 (56%), Positives = 79/111 (71%)

Query:     1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
             MKI CDVC+K  A+V C ADEAALC  CD  +H ANKLASKH R +L S S K  P CDI
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTK-FPRCDI 59

Query:    61 CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASV 111
             CQE+ A +FC EDRA+LCR+CD  IH A+  +  H RFL TG+K+  ++++
Sbjct:    60 CQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTI 110

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 60/110 (54%), Positives = 74/110 (67%)

Query:     1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
             MKI CDVC+K  A++ C ADEAALC  CD  VH ANKLASKH R  L S S K  P CDI
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPP-CDI 59

Query:    61 CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASAS 110
             C E+ A +FC EDRA+LCR+CD   H  +  +  H RFL TG+++  S++
Sbjct:    60 CLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSST 109

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 55/111 (49%), Positives = 70/111 (63%)

Query:     1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKES----- 55
             MKI C+VC+K EA V C +DEA LC  CD +VH ANKL  +H R  L   +   +     
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    56 PLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLT 106
             PLCDICQER+   FC EDRA+LC +CD  IH  +     H RFLL+GV+++
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNS----HQRFLLSGVQVS 107

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 49/100 (49%), Positives = 64/100 (64%)

Query:     1 MKIWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDI 60
             M+I CD C+   A VFC+ADEAALC +CD +VH  NKLAS+H R  L  PS   +P CDI
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPS--NAPSCDI 58

Query:    61 CQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL 100
             C+   A  +C+ D + LC +CD+ +H   + T  H RFLL
Sbjct:    59 CENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLL 96

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
 Identities = 37/93 (39%), Positives = 49/93 (52%)

Query:     5 CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
             CD C     +V+C AD A LC +CD +VH AN+LAS+H R  +          C  C+  
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV----------CQSCERA 61

Query:    65 RALLFCQEDRAILCRECDIPIHKASEYTKKHNR 97
              A  FC+ D A LC  CD  IH A+   ++H R
Sbjct:    62 PAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 42/93 (45%), Positives = 56/93 (60%)

Query:     5 CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
             CD CD   A V+C AD A LC+ACD++VH AN+L +KH R          S LCD C E 
Sbjct:    13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR----------SLLCDSCNES 62

Query:    65 RALLFCQEDRAILCRECDIPIHKASEYTKKHNR 97
              + LFC+ +R++LC+ CD   H AS  +  H+R
Sbjct:    63 PSSLFCETERSVLCQNCDWQHHTAS--SSLHSR 93

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 39/97 (40%), Positives = 55/97 (56%)

Query:     5 CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
             CD C    A++FC AD A LC  CD ++H ANKLAS+H R  L          C++C++ 
Sbjct:     8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL----------CEVCEQA 57

Query:    65 RALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLT 101
              A + C+ D A LC  CD  IH A+  +++H R  +T
Sbjct:    58 PAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPIT 94

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 191 (72.3 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/93 (38%), Positives = 52/93 (55%)

Query:     5 CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLCDICQER 64
             CD C    + V+C AD A LC +CD RVH AN++AS+H R  +          C+ C++ 
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV----------CEACEQA 84

Query:    65 RALLFCQEDRAILCRECDIPIHKASEYTKKHNR 97
              A L C+ D A LC  CD+ +H A+   ++H R
Sbjct:    85 PAALACRADAAALCVACDVQVHSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0IGM7	BBX20_ARATH	No assigned EC number	0.5714	0.6702	0.7644	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	4e-09
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	5e-09
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	1e-06
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-06
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	4e-05

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 56  PLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL 100
            LCD   E    LFC+ DRA+LC +CD+ +H        H R  L
Sbjct: 1   RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 53  KESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL 100
           + +P CD   +  A  FC+E  A+LCR CD   H      + H   LL
Sbjct: 1   QRAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 5  CDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRF 45
          CD   +E  S+FC  D A LCV CD  VH      S H R 
Sbjct: 3  CDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRV 37

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 6/44 (13%)

Query: 4  WCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNL 47
           CD    E A  FC    A LC  CD   H        H    L
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 53 KESPLCDICQERRALLFCQEDRAILCRECDIPIHK 87
           +  LC   +E+   L+C++ + +LC EC +  HK
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHK 35

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.61
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.44
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.37
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.24
smart00336	42	BBOX B-Box-type zinc finger.	96.9
smart00336	42	BBOX B-Box-type zinc finger.	96.78
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.72

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.61  E-value=4.2e-05  Score=50.11  Aligned_cols=38  Identities=47%  Similarity=0.966  Sum_probs=33.7

Q ss_pred             ccccccCcceeEeccccccccccccccCcccCCCccCCcceeee
Q 023869           57 LCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL  100 (276)
Q Consensus        57 LCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL  100 (276)
                      +|+.|+.+++.+||..|.+.+|..|+..+|      +.|.+++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H------~~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhc------CCCCEeeC
Confidence            699999999999999999999999998875      37888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.44  E-value=9.5e-05  Score=48.41  Aligned_cols=38  Identities=47%  Similarity=0.865  Sum_probs=33.6

Q ss_pred             cccccCCCCceEEeccCccccchhhhhccccCccccCCcccccc
Q 023869            4 WCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNL   47 (276)
Q Consensus         4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL   47 (276)
                      .|+.++++++.+||..|.+.+|..|+...|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6999998899999999999999999988774      7888764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=0.00011  Score=49.42  Aligned_cols=40  Identities=33%  Similarity=0.647  Sum_probs=34.2

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeee
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL  100 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL  100 (276)
                      ...|+.|+..++.+||..|...||..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4699999999999999999999999999998643      887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.24  E-value=9e-05  Score=74.12  Aligned_cols=88  Identities=22%  Similarity=0.439  Sum_probs=75.4

Q ss_pred             ccccccCCC--CceEEeccCccccchhhhhccccCccccCCcccccccC------CCCCCCCccccccCcceeEeccccc
Q 023869            3 IWCDVCDKE--EASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVS------PSYKESPLCDICQERRALLFCQEDR   74 (276)
Q Consensus         3 ~~Cd~C~~a--~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL~~------p~~k~~pLCDvCqs~pA~vfC~~D~   74 (276)
                      .+|.+|+++  .|.|+|..+..++|.-|..+.|-+-..+.||.-+|-.+      -+++....|..|+.+.-.+||.+|.
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            369999987  69999999999999999999999988888998776422      2345667899999999999999999


Q ss_pred             cccccccccCcccCCC
Q 023869           75 AILCRECDIPIHKASE   90 (276)
Q Consensus        75 A~LC~~CD~~~HsAN~   90 (276)
                      +++|..|-..+.|+|-
T Consensus       243 ~pvc~~clee~khs~h  258 (699)
T KOG4367|consen  243 MPVCYQCLEEGKHSSH  258 (699)
T ss_pred             ChHHHHHHHhhcccch
Confidence            9999999998877763

>smart00336 BBOX B-Box-type zinc finger

Probab=96.90  E-value=0.0009  Score=44.30  Aligned_cols=40  Identities=43%  Similarity=0.816  Sum_probs=33.9

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeee
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL  100 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL  100 (276)
                      ...|+.|+.+++.+||..|...+|..|....|      +.|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            36899999999999999999999999998744      57777664

>smart00336 BBOX B-Box-type zinc finger

Probab=96.78  E-value=0.0011  Score=43.92  Aligned_cols=39  Identities=36%  Similarity=0.584  Sum_probs=33.3

Q ss_pred             ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccc
Q 023869            3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNL   47 (276)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL   47 (276)
                      ..|..++..++.+||..|++.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5799999889999999999999999998866      47777653

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.72  E-value=0.0014  Score=44.03  Aligned_cols=39  Identities=26%  Similarity=0.487  Sum_probs=33.3

Q ss_pred             ccccccCCCCceEEeccCccccchhhhhccccCccccCCcccccc
Q 023869            3 IWCDVCDKEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNL   47 (276)
Q Consensus         3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~RvpL   47 (276)
                      ..|+.|.+..+.+||..++..+|..|....|..      |..++|
T Consensus         4 ~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    4 PKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             ccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            579999998899999999999999999999864      777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 51.5 bits (123), Expect = 6e-09
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 2  KIWCDVCD---KEEASVFCSADEAALCVACDRRVHHANKLASKHPRFNLVSPSYKESPLC 58
          K+ C  CD    ++A   C   E + C  C +  H   K  + H     +  S+    +C
Sbjct: 3  KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 62

Query: 59 DICQERRALLFCQEDRAILCRECDI 83
             ++ +  ++C  D  ++C  C +
Sbjct: 63 LEHEDEKVNMYCVTDDQLICALCKL 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 79/230 (34%)

Query: 6   DVCDKEEASVFCSADEAALCVAC-------DRRVHHANKLAS---KHPRFNLVSPSYKES 55
           +V + +  + F   +     ++C        ++V   + L++    H   +  S +    
Sbjct: 252 NVQNAKAWNAF---N-----LSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPD 301

Query: 56  PLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGVKLTASASVT-FN 114
                  E ++LL     + + CR  D+P  +        N   L+ +    + S+    
Sbjct: 302 -------EVKSLLL----KYLDCRPQDLP-REV----LTTNPRRLSII----AESIRDGL 341

Query: 115 TTYNPSPSSSTCCDTTKTTTTTSIDDQKKISPSSHSN-----SIFSSNSTPRDNHISDTS 169
            T++     +  CD   T   +S++  +   P+ +       S+F     P   H     
Sbjct: 342 ATWDNWKHVN--CDKLTTIIESSLNVLE---PAEYRKMFDRLSVF-----PPSAH----- 386

Query: 170 SISEYLMETLPGWRVDDFLDPPSYATSTNVLCKICDQDLERKMVYFSLLE 219
            I   L+  +  W      D                  +  K+  +SL+E
Sbjct: 387 -IPTILLSLI--WFDVIKSDV---------------MVVVNKLHKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.01
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	96.13
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	95.06
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.01
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.58
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	94.3
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.99
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	93.76
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	93.43
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	93.29
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	92.73
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.65
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	90.54
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	83.85

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.01  E-value=3.9e-10  Score=87.04  Aligned_cols=93  Identities=23%  Similarity=0.528  Sum_probs=75.3

Q ss_pred             CccccccCC---CCceEEeccCccccchhhhhccccCccccCCcccc-cccCCCCCCCCccccccCcceeEecccccccc
Q 023869            2 KIWCDVCDK---EEASVFCSADEAALCVACDRRVHHANKLASKHPRF-NLVSPSYKESPLCDICQERRALLFCQEDRAIL   77 (276)
Q Consensus         2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~Rv-pL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~L   77 (276)
                      ++.|++|..   .+|+.+|..+.+.||..|...+|..++.+.+|..+ |+.. .......|+.|+..+..+||..|...+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~-~~~~~~~C~~H~~e~l~~fC~~~~~~i   81 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPD-SHIRGLMCLEHEDEKVNMYCVTDDQLI   81 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCS-CCSSCCCCSSCSSSCCCEEETTTTEEE
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccc-cCccCCcCcCcCCCcceEECCCCCCcc
Confidence            468999984   68999999999999999999999988888899987 4332 123456899999999999999999999


Q ss_pred             cccccc-CcccCCCccCCcceeeec
Q 023869           78 CRECDI-PIHKASEYTKKHNRFLLT  101 (276)
Q Consensus        78 C~~CD~-~~HsAN~la~rH~RvpL~  101 (276)
                      |..|.. ..|      +.|...+|.
T Consensus        82 C~~C~~~~~H------~~H~~~~l~  100 (101)
T 2jun_A           82 CALCKLVGRH------RDHQVAALS  100 (101)
T ss_dssp             CHHHHHHTTT------SSSCBCCCC
T ss_pred             chhcCCCCCc------CCCCeecCC
Confidence            999987 334      346655553

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=96.13  E-value=0.004  Score=46.28  Aligned_cols=60  Identities=15%  Similarity=0.298  Sum_probs=43.4

Q ss_pred             cCCcccccccCCCCCCCCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           39 ASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        39 a~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      +.+|..+............|+.|+..+..+||..|...+|..|...+.     .+.|..++|..+
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~~~~l~ea   61 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGR-----HRDHQVASLNDR   61 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTST-----TTTCCBCCCCSS
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCC-----CCCCCccCHHHH
Confidence            356777654321123456899998889999999999999999988432     246777777665

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=95.06  E-value=0.015  Score=39.78  Aligned_cols=43  Identities=30%  Similarity=0.588  Sum_probs=35.2

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      ...|..|+ ++..+||..|...+|..|.....     .+.|..++|..+
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~~~~l~ea   50 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHT-----HRAHTVVPLSGP   50 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSST-----TTTSCEEECCCT
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCC-----CCCCcEeeHHHH
Confidence            45899998 78999999999999999987432     257888888765

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.01  E-value=0.011  Score=41.65  Aligned_cols=44  Identities=18%  Similarity=0.388  Sum_probs=35.7

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      ...|+.|...+..+||..|...+|..|...+.|     +.|..+||..+
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H-----~~H~~~~l~~a   51 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH-----KACEVAPLQSV   51 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST-----TSSCEECTTTC
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcC-----CCCCeeCHHHH
Confidence            468999988899999999999999999875322     36777777765

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.58  E-value=0.017  Score=39.03  Aligned_cols=43  Identities=26%  Similarity=0.703  Sum_probs=35.1

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      ...|..|...+..+||..|...+|..|....|      +.|...+|..+
T Consensus         6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea   48 (50)
T 2yvr_A            6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA   48 (50)
T ss_dssp             SCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred             CCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence            36899998889999999999999999987533      47888887765

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=94.30  E-value=0.019  Score=38.60  Aligned_cols=42  Identities=17%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeec
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLT  101 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~  101 (276)
                      ..+|..|+.++..+||..|...+|..|....     ..+.|..+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~-----~H~~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFG-----IHKACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHS-----TTTTSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCC-----cCCCCcEEeCC
Confidence            4689999888899999999999999997532     12467766664

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.99  E-value=0.019  Score=43.59  Aligned_cols=44  Identities=23%  Similarity=0.466  Sum_probs=37.8

Q ss_pred             CCccccccC---cceeEeccccccccccccccCcccCCCccCCccee
Q 023869           55 SPLCDICQE---RRALLFCQEDRAILCRECDIPIHKASEYTKKHNRF   98 (276)
Q Consensus        55 ~pLCDvCqs---~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~Rv   98 (276)
                      ...|++|..   .+|..+|..|...+|..|....|..+....+|.++
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            368999984   68999999999999999999888877777788765

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=93.76  E-value=0.032  Score=36.30  Aligned_cols=28  Identities=25%  Similarity=0.625  Sum_probs=25.0

Q ss_pred             CccccccCcceeEeccccccccccccccC
Q 023869           56 PLCDICQERRALLFCQEDRAILCRECDIP   84 (276)
Q Consensus        56 pLCDvCqs~pA~vfC~~D~A~LC~~CD~~   84 (276)
                      .+|..|+ ++..+||..|...+|..|...
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~   31 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDS   31 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence            5799997 778999999999999999874

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.43  E-value=0.025  Score=39.75  Aligned_cols=38  Identities=21%  Similarity=0.430  Sum_probs=29.7

Q ss_pred             cccCCCCCCCCccccccCcceeEeccccccccccccccC
Q 023869           46 NLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIP   84 (276)
Q Consensus        46 pL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~   84 (276)
                      |...+......+|..|+ ++..+||..|...+|..|...
T Consensus         9 ~~~~~~~~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~   46 (57)
T 2egm_A            9 PGRGSRVTDQGICPKHQ-EALKLFCEVDEEAICVVCRES   46 (57)
T ss_dssp             CCCCCSCCTTSBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred             CCcCccccccCcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence            33333344556899995 789999999999999999874

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.29  E-value=0.07  Score=37.64  Aligned_cols=43  Identities=30%  Similarity=0.617  Sum_probs=34.7

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      ..+|..|+ ++..+||..|...+|..|....     ..+.|..++|..+
T Consensus        14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~-----eH~~H~~~~l~ea   56 (59)
T 2yrg_A           14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQ-----EHRGHHTFPTSGP   56 (59)
T ss_dssp             SSBCTTTC-CBCCEEETTTCSEECHHHHTST-----TTTTCCEEECCSS
T ss_pred             CccChhhC-ceeeeecCCCCcEEecccCCCC-----cCCCCcEeeHHHH
Confidence            46899997 5789999999999999998743     2357888888765

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=92.73  E-value=0.077  Score=39.65  Aligned_cols=44  Identities=27%  Similarity=0.583  Sum_probs=37.1

Q ss_pred             CccccccCC---CCceEEeccCccccchhhhhccccCccccCCcccc
Q 023869            2 KIWCDVCDK---EEASVFCSADEAALCVACDRRVHHANKLASKHPRF   45 (276)
Q Consensus         2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~VHsAN~La~rH~Rv   45 (276)
                      .+.||+|..   .+|+..|....+.||..|=+..|...+.+.+|.=+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            368999985   68999999999999999988888877777788643

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.65  E-value=0.055  Score=39.20  Aligned_cols=56  Identities=23%  Similarity=0.431  Sum_probs=39.9

Q ss_pred             cCCcccccccCCCCCCCCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           39 ASKHPRFNLVSPSYKESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        39 a~rH~RvpL~~p~~k~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      +.+|+-+.-.  .......|+.|+ ++..+||..|...+|..|....|      +.|..++|..+
T Consensus         4 ~~~H~L~~p~--~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea   59 (72)
T 2csv_A            4 GSSGQLLEPI--RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA   59 (72)
T ss_dssp             SCCCCCCCCS--SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred             ccCCcccCCc--cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHH
Confidence            3456654321  123456899995 88999999999999999987333      47888887665

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=90.54  E-value=0.091  Score=39.23  Aligned_cols=45  Identities=24%  Similarity=0.482  Sum_probs=37.1

Q ss_pred             CCCccccccC---cceeEeccccccccccccccCcccCCCccCCccee
Q 023869           54 ESPLCDICQE---RRALLFCQEDRAILCRECDIPIHKASEYTKKHNRF   98 (276)
Q Consensus        54 ~~pLCDvCqs---~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~Rv   98 (276)
                      ....|++|..   .+|...|..|.+.+|..|-...|...+..++|..+
T Consensus        29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            3579999986   67999999999999999988767777777788643

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=83.85  E-value=2.1  Score=32.44  Aligned_cols=47  Identities=19%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             CccccccCccee---Eecccccc----ccccccccCcccCCCccCCcceeeecC
Q 023869           56 PLCDICQERRAL---LFCQEDRA----ILCRECDIPIHKASEYTKKHNRFLLTG  102 (276)
Q Consensus        56 pLCDvCqs~pA~---vfC~~D~A----~LC~~CD~~~HsAN~la~rH~RvpL~g  102 (276)
                      ..||.|+..+..   +.|..|.-    -||..|-..+.....+...|.-..+..
T Consensus        22 ~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~   75 (82)
T 2fc7_A           22 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR   75 (82)
T ss_dssp             CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred             CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeC
Confidence            489999987654   78999975    699999988765555556776555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.26
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.78
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.32
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.6
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	94.08
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	92.71
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	89.42

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.00068  Score=45.64  Aligned_cols=43  Identities=19%  Similarity=0.399  Sum_probs=35.5

Q ss_pred             CccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           56 PLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        56 pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      |+|+.|...+..+||..|...+|..|...+.|     +.|.-.+|..+
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H-----k~H~v~~l~~a   44 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH-----KACEVAPLQSV   44 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST-----TSSCEECTTTC
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc-----CcCcCcCHHHH
Confidence            58999999999999999999999999876433     35777777665

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0023  Score=44.93  Aligned_cols=43  Identities=16%  Similarity=0.413  Sum_probs=35.5

Q ss_pred             CccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           56 PLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        56 pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      ..|+.|...+..+||..|...+|..|...++|     ..|...+|..+
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~~a   54 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLNDR   54 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCCSS
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHHHH
Confidence            57999999999999999999999999876433     35877777655

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0039  Score=41.18  Aligned_cols=42  Identities=17%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             CCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeec
Q 023869           55 SPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLT  101 (276)
Q Consensus        55 ~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~  101 (276)
                      ..+|..|..++..+||..|..++|..|.+.+.|     +.|.-.+|.
T Consensus         5 ~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H-----~~H~~~~l~   46 (47)
T d2dq5a1           5 GLMCLEHEDEKVNMYCVTDDQLICALCKLVGRH-----RDHQVAALS   46 (47)
T ss_dssp             CCBCSSCTTSBEEEEETTTTEEEEHHHHHTSST-----TSSCCCCSC
T ss_pred             CccchhhCCCcceEEcCCCCccCCccCcCcCCc-----CCCeEeeCC
Confidence            468999999999999999999999999876432     346655543

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0082  Score=38.49  Aligned_cols=39  Identities=31%  Similarity=0.593  Sum_probs=30.9

Q ss_pred             CccccccCcceeEeccccccccccccccCcccCCCccCCcceeee
Q 023869           56 PLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL  100 (276)
Q Consensus        56 pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL  100 (276)
                      .+|..|+ ++-.+||..|...+|..|...+.     .+.|.-+||
T Consensus         2 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~v~pi   40 (40)
T d2dida1           2 SLCPQHH-EALSLFCYEDQEAVCLICAISHT-----HRAHTVVPL   40 (40)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSST-----TTTSCEEEC
T ss_pred             CcchhhC-ccceEEcccCCcEeeccCcCCCC-----cCCCcEecC
Confidence            4799995 78999999999999999976542     246776664

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.08  E-value=0.012  Score=37.62  Aligned_cols=38  Identities=24%  Similarity=0.570  Sum_probs=29.1

Q ss_pred             ccccccCcceeEeccccccccccccccCcccCCCccCCcceeee
Q 023869           57 LCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLL  100 (276)
Q Consensus        57 LCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL  100 (276)
                      .|..|+ ++..+||..|...+|..|...+.     .+.|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~-----H~~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLK-----HASHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSS-----CTTCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCC-----cCCCcEeeC
Confidence            588885 68999999999999999977542     345665553

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.021  Score=38.97  Aligned_cols=43  Identities=28%  Similarity=0.589  Sum_probs=34.2

Q ss_pred             CCCccccccCcceeEeccccccccccccccCcccCCCccCCcceeeecCc
Q 023869           54 ESPLCDICQERRALLFCQEDRAILCRECDIPIHKASEYTKKHNRFLLTGV  103 (276)
Q Consensus        54 ~~pLCDvCqs~pA~vfC~~D~A~LC~~CD~~~HsAN~la~rH~RvpL~g~  103 (276)
                      ...+|..|+ .+..+||..|...+|..|....|      ..|..++|..+
T Consensus        10 ~~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~~a   52 (59)
T d2csva1          10 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA   52 (59)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred             hhCchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHHHH
Confidence            346899995 68999999999999999965443      46888877654

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.23  Score=34.86  Aligned_cols=46  Identities=20%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             CccccccCcc---eeEecccc----ccccccccccCcccCCCccCCcceeeec
Q 023869           56 PLCDICQERR---ALLFCQED----RAILCRECDIPIHKASEYTKKHNRFLLT  101 (276)
Q Consensus        56 pLCDvCqs~p---A~vfC~~D----~A~LC~~CD~~~HsAN~la~rH~RvpL~  101 (276)
                      ..||.|+..+   ..+.|..|    .--||..|-...+....+...|.-.+|-
T Consensus        15 ~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1          15 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY   67 (69)
T ss_dssp             CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred             eEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEee
Confidence            3899999886   45788888    5789999988777666666788776663